BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022849
         (291 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M3O|A Chain A, Crystal Structure Of Agrocybe Aegerita Lectin Aal Mutant
           R85a Complexed With P-Nitrophenyl Tf Disaccharide
          Length = 158

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 152 AFRNQRFKIV--NRIVKGPWIVKKA---VGNYSACLLGKALTCNYHRGPNY 197
           AFR Q   I+  +R   GPW+V++A   V N  A + GKA+   +  G  Y
Sbjct: 61  AFRLQENVIIFNSRQPDGPWLVEQAVSDVANQFAGIDGKAMVTVFDHGDKY 111


>pdb|1A4E|A Chain A, Catalase A From Saccharomyces Cerevisiae
 pdb|1A4E|B Chain B, Catalase A From Saccharomyces Cerevisiae
 pdb|1A4E|C Chain C, Catalase A From Saccharomyces Cerevisiae
 pdb|1A4E|D Chain D, Catalase A From Saccharomyces Cerevisiae
          Length = 488

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 40  WASPPGDLFFLRSRNYFTKKQKSPAGDY-LLLPIGMDWLRSTTKLD----NVLARPDNRI 94
           WA+ PGD+ F+++RN +    K P     L   IG+    +  ++     ++ AR D  +
Sbjct: 420 WATSPGDVDFVQARNLYRVLGKQPGQQKNLAYNIGIHVEGACPQIQQRVYDMFARVDKGL 479

Query: 95  AQALKK 100
           ++A+KK
Sbjct: 480 SEAIKK 485


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,865,284
Number of Sequences: 62578
Number of extensions: 360731
Number of successful extensions: 636
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 5
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)