BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022849
         (291 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8F9E4|PCKA_LEPIN Phosphoenolpyruvate carboxykinase [ATP] OS=Leptospira interrogans
           serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
           GN=pckA PE=3 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 77  LRSTTKLDNVLARPDNRIAQALKKAQSQGKSLKSFIFAVN-LQVPGKDQHSAVFYFATED 135
           +R    L+NV+  P  +I      A+++   +   IF +N +QVP K  H     F T D
Sbjct: 290 IRKDALLENVVYDPQTKIVDYSSAAKTENTRVSYPIFHINNIQVPSKGGHPKTIIFLTYD 349

Query: 136 PI----PLGSL-----LYRFVNGDDAFRNQRFKIVNRIVKGPWIVKKAVGNYSACLLGKA 186
                 P+  L     +Y F++G  A          ++      +K+    +SAC     
Sbjct: 350 AFGVLPPVSKLSIEQAMYHFLSGYTA----------KVAGTERGIKEPTATFSACFGAAF 399

Query: 187 LT 188
           +T
Sbjct: 400 MT 401


>sp|Q72VT0|PCKA_LEPIC Phosphoenolpyruvate carboxykinase [ATP] OS=Leptospira interrogans
           serogroup Icterohaemorrhagiae serovar copenhageni
           (strain Fiocruz L1-130) GN=pckA PE=3 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 77  LRSTTKLDNVLARPDNRIAQALKKAQSQGKSLKSFIFAVN-LQVPGKDQHSAVFYFATED 135
           +R    L+NV+  P  +I      A+++   +   IF +N +QVP K  H     F T D
Sbjct: 290 IRKDALLENVVYDPQTKIVDYSSAAKTENTRVSYPIFHINNIQVPSKGGHPKTIIFLTYD 349

Query: 136 PI----PLGSL-----LYRFVNGDDAFRNQRFKIVNRIVKGPWIVKKAVGNYSACLLGKA 186
                 P+  L     +Y F++G  A          ++      +K+    +SAC     
Sbjct: 350 AFGVLPPVSKLSIEQAMYHFLSGYTA----------KVAGTERGIKEPTATFSACFGAAF 399

Query: 187 LT 188
           +T
Sbjct: 400 MT 401


>sp|Q9JKF1|IQGA1_MOUSE Ras GTPase-activating-like protein IQGAP1 OS=Mus musculus GN=Iqgap1
           PE=1 SV=2
          Length = 1657

 Score = 31.6 bits (70), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 1   MCPKQHKHRASSTGLPEWITESIHGGSLLHVDLETGTNGWASPP 44
           +   + K  A+     +W+   + GG   + +LET   GWA PP
Sbjct: 668 LAEAKKKRLAAGDNNSKWVKHWVKGGYHYYHNLETQAGGWAEPP 711


>sp|A5WGY0|RECA_PSYWF Protein RecA OS=Psychrobacter sp. (strain PRwf-1) GN=recA PE=3 SV=1
          Length = 349

 Score = 31.2 bits (69), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 192 HRGPNYLEIDVDIASSTIASAILHLALGYVTSVTIDMGFLVESQAEDELPERLLGAVRVC 251
           H G N   +DVD+ S+      + L +G +    I   +  ES  +  L    L A+  C
Sbjct: 27  HLGDNSATLDVDVVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLT---LQAIAEC 83

Query: 252 QMEMSSAFVVDAPHAI--VNSRGLGPAKVNHDD 282
           Q +  +   +DA HA+  + +R LG   VN DD
Sbjct: 84  QKQGGTCAFIDAEHALDPIYARKLG---VNTDD 113


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,000,274
Number of Sequences: 539616
Number of extensions: 4532738
Number of successful extensions: 9347
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9344
Number of HSP's gapped (non-prelim): 5
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)