Query 022849
Match_columns 291
No_of_seqs 118 out of 224
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 6.7E-83 1.4E-87 648.1 18.7 244 13-266 474-717 (719)
2 PF07059 DUF1336: Protein of u 100.0 3.3E-81 7.1E-86 569.6 19.4 207 40-254 1-227 (227)
3 PF06348 DUF1059: Protein of u 25.8 13 0.00028 27.1 -1.3 27 223-249 8-34 (57)
4 PF04308 DUF458: Protein of un 24.9 41 0.00089 29.3 1.4 28 196-223 94-121 (144)
5 COG1521 Pantothenate kinase ty 21.4 2.1E+02 0.0045 27.1 5.4 102 124-230 19-131 (251)
6 COG5639 Uncharacterized conser 15.9 43 0.00092 26.3 -0.4 22 141-162 52-73 (77)
7 COG3522 Predicted component of 15.6 2.5E+02 0.0054 28.9 4.8 69 126-203 344-413 (446)
8 PF03622 IBV_3B: IBV 3B protei 14.8 1.6E+02 0.0034 22.3 2.4 19 184-202 34-52 (64)
9 TIGR02196 GlrX_YruB Glutaredox 13.3 2.7E+02 0.0059 18.9 3.3 45 194-240 24-69 (74)
10 KOG1909 Ran GTPase-activating 12.9 1.4E+02 0.0031 29.9 2.2 64 195-258 30-102 (382)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=6.7e-83 Score=648.14 Aligned_cols=244 Identities=45% Similarity=0.763 Sum_probs=231.3
Q ss_pred CCCccceeeecccCcccccCCCCCCCCccCCCCCceeecCCCcccCCccccCCCCcceeeeeeeeecCCCccccccCCCc
Q 022849 13 TGLPEWITESIHGGSLLHVDLETGTNGWASPPGDLFFLRSRNYFTKKQKSPAGDYLLLPIGMDWLRSTTKLDNVLARPDN 92 (291)
Q Consensus 13 ~~~~~~~~~~~~g~sl~~~~~~~~~~~Ws~p~~~~F~VRG~~Yl~dk~Kvps~~~l~~lvgvDlf~s~~ri~hIa~~~~~ 92 (291)
+..++-++...++|+|++.+.+++.+|||+|+++.|+|||+|||+||+|+||+++||+|+|||||++++|++|||+||.+
T Consensus 474 ~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~ 553 (719)
T PLN00188 474 EEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGC 553 (719)
T ss_pred cCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCceEEEEEEEecCCCCceEEEEEeeCCCCCchhhHHHhhcCCccccccceeEEeeeccchhHHH
Q 022849 93 RIAQALKKAQSQGKSLKSFIFAVNLQVPGKDQHSAVFYFATEDPIPLGSLLYRFVNGDDAFRNQRFKIVNRIVKGPWIVK 172 (291)
Q Consensus 93 ~~~~~l~~~~~~~~~~~pf~fiVNlqlP~~~~~s~V~Yf~~~~~~~~~~Ll~rFl~gDd~fRn~RfKLIp~Vv~gpwiVr 172 (291)
+++.+. ...||+|||||||||+++||+|+||+++ +++.++||+||++|||+|||+||||||+|++||||||
T Consensus 554 ~vq~a~--------~k~~F~fiVNlQvPg~~~ys~V~Yf~~~-~l~~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk 624 (719)
T PLN00188 554 AAQVAA--------EKGLFSFVVNLQVPGSTHYSMVFYFVTK-ELVPGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVR 624 (719)
T ss_pred hhhhhc--------ccCCcEEEEEEEccCCCceEEEEEEecc-CCCCchHHHHhccCchhHhhCceEEeccccCCceEEE
Confidence 876642 1248999999999999999999999985 5888999999999999999999999999999999999
Q ss_pred HhhcCCCcccccceeeeeEeeCCCEEEEEEEcCchHHHHHHHHHhhcccceEEEeeeeeeecCCccccccceeceEEecc
Q 022849 173 KAVGNYSACLLGKALTCNYHRGPNYLEIDVDIASSTIASAILHLALGYVTSVTIDMGFLVESQAEDELPERLLGAVRVCQ 252 (291)
Q Consensus 173 ~aVG~~~~~llGk~l~~~y~~g~nYlEiDvDI~sS~vA~~i~~l~~g~~k~lvvD~gf~IEg~~eeELPE~lLG~vRl~~ 252 (291)
++||++ ||||||+|+|+||+|+||||||||||||++|++|++|++||+++|||||||+|||+++|||||+|||||||++
T Consensus 625 ~aVG~~-p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~ 703 (719)
T PLN00188 625 QSVGST-PCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTYEELPERLIGAVRVSH 703 (719)
T ss_pred eccCCc-ceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhheEEEEEEEEecCChhhCchhheeeEEecc
Confidence 999996 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCcc
Q 022849 253 MEMSSAFVVDAPHA 266 (291)
Q Consensus 253 lD~~~A~~ld~~~~ 266 (291)
||+++|+.++...+
T Consensus 704 i~~~~A~~~~~~~~ 717 (719)
T PLN00188 704 VELSSAIVPKLDPD 717 (719)
T ss_pred cchhhccccCCCCC
Confidence 99999998876643
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=3.3e-81 Score=569.57 Aligned_cols=207 Identities=51% Similarity=0.901 Sum_probs=197.5
Q ss_pred ccCCCCCceeecCCCcccCCccccCCCCcceeeeeeeeecCCCccccccCCCcHHHHHHHHhhhcCCCCCceEEEEEEEe
Q 022849 40 WASPPGDLFFLRSRNYFTKKQKSPAGDYLLLPIGMDWLRSTTKLDNVLARPDNRIAQALKKAQSQGKSLKSFIFAVNLQV 119 (291)
Q Consensus 40 Ws~p~~~~F~VRG~~Yl~dk~Kvps~~~l~~lvgvDlf~s~~ri~hIa~~~~~~~~~~l~~~~~~~~~~~pf~fiVNlql 119 (291)
||+|++++|+|||+||++||+|+||+++||+++|||||++++|++|||+|+.++++..... ..||+|||||||
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-------~~P~~fIVNlqv 73 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-------GVPFTFIVNLQV 73 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-------CCCcEEEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999887655432 468999999999
Q ss_pred cC----------CCCceEEEEEeeCCCCCc------hhhHHHhhcCC---ccccccceeEEeeeccchhHHHHhh-cCCC
Q 022849 120 PG----------KDQHSAVFYFATEDPIPL------GSLLYRFVNGD---DAFRNQRFKIVNRIVKGPWIVKKAV-GNYS 179 (291)
Q Consensus 120 P~----------~~~~s~V~Yf~~~~~~~~------~~Ll~rFl~gD---d~fRn~RfKLIp~Vv~gpwiVr~aV-G~~~ 179 (291)
|+ +|+||+|+||++++++.. .+||+||++|| |+|||+||||||+|+|||||||++| |++
T Consensus 74 P~~p~~~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~k- 152 (227)
T PF07059_consen 74 PGYPPSMFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGK- 152 (227)
T ss_pred cCCccccccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCC-
Confidence 99 999999999999987765 89999999999 9999999999999999999999999 665
Q ss_pred cccccceeeeeEeeCCCEEEEEEEcCchHHHHHHHHHhhcccceEEEeeeeeeecCCccccccceeceEEecccC
Q 022849 180 ACLLGKALTCNYHRGPNYLEIDVDIASSTIASAILHLALGYVTSVTIDMGFLVESQAEDELPERLLGAVRVCQME 254 (291)
Q Consensus 180 ~~llGk~l~~~y~~g~nYlEiDvDI~sS~vA~~i~~l~~g~~k~lvvD~gf~IEg~~eeELPE~lLG~vRl~~lD 254 (291)
|+|||++++|+||+|+||||||||||||++|++++++++||+++|+|||||+|||+++|||||+||||+||+|||
T Consensus 153 P~lig~~~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 153 PVLIGKKLQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred ceeecCccceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=25.75 E-value=13 Score=27.12 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=21.5
Q ss_pred eEEEeeeeeeecCCccccccceeceEE
Q 022849 223 SVTIDMGFLVESQAEDELPERLLGAVR 249 (291)
Q Consensus 223 ~lvvD~gf~IEg~~eeELPE~lLG~vR 249 (291)
.+..|.+|.+.|.+++||-+++---.|
T Consensus 8 d~g~~C~~~~~a~tedEll~~~~~Ha~ 34 (57)
T PF06348_consen 8 DVGPDCGFVIRAETEDELLEAVVEHAR 34 (57)
T ss_pred ccCCCCCeEEeeCCHHHHHHHHHHHHH
Confidence 456789999999999999888754433
No 4
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=24.88 E-value=41 Score=29.33 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=22.2
Q ss_pred CEEEEEEEcCchHHHHHHHHHhhcccce
Q 022849 196 NYLEIDVDIASSTIASAILHLALGYVTS 223 (291)
Q Consensus 196 nYlEiDvDI~sS~vA~~i~~l~~g~~k~ 223 (291)
-=+||.+||+...-.+..++-+.||+..
T Consensus 94 ~~~EiHiDIg~~g~T~~~i~E~vG~v~~ 121 (144)
T PF04308_consen 94 VDLEIHIDIGTNGKTRELIKEVVGYVEG 121 (144)
T ss_pred ccEEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 3489999999977777777777777766
No 5
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=21.38 E-value=2.1e+02 Score=27.11 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=59.2
Q ss_pred CceEEEEEeeCCCCC-----chhhHHHhhcCCccccccceeEEeeeccch-----hHHHHhhcCCCcccccceeeeeEe-
Q 022849 124 QHSAVFYFATEDPIP-----LGSLLYRFVNGDDAFRNQRFKIVNRIVKGP-----WIVKKAVGNYSACLLGKALTCNYH- 192 (291)
Q Consensus 124 ~~s~V~Yf~~~~~~~-----~~~Ll~rFl~gDd~fRn~RfKLIp~Vv~gp-----wiVr~aVG~~~~~llGk~l~~~y~- 192 (291)
+-.++.+|++...-. ....+..++.++ .++.=+..+|+.|+..- -++++...-.+..+.+++....++
T Consensus 19 ~~~~~~~~r~~t~~~~~~del~~~~~~l~~~~-~~~~~~~~~issvvp~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~ 97 (251)
T COG1521 19 GGKVVQTWRLATEDLLTEDELGLQLHNLFDGN-SVRDIDGIVISSVVPPLGIFLEAVLKEYFKVKPLVVISPKQLLGIRV 97 (251)
T ss_pred CCeEEEEEeecccccccHHHHHHHHHHHhccc-cccccccceeeccCccHHHHHHHHHHHHhccCceeeechhhccCCcc
Confidence 347888899864321 134555566666 66766789999999321 235555544433555666444433
Q ss_pred eCCCEEEEEEEcCchHHHHHHHHHhhcccceEEEeeee
Q 022849 193 RGPNYLEIDVDIASSTIASAILHLALGYVTSVTIDMGF 230 (291)
Q Consensus 193 ~g~nYlEiDvDI~sS~vA~~i~~l~~g~~k~lvvD~gf 230 (291)
.-++|-|+.+|---..+|.+ ..-|.. -+|||+|=
T Consensus 98 ~~~~p~elG~DR~~n~vaA~---~~~~~~-~vVVD~GT 131 (251)
T COG1521 98 LYDNPEELGADRIANAVAAY---HKYGKA-VVVVDFGT 131 (251)
T ss_pred cCCChhhhcHHHHHHHHHHH---HHcCCc-EEEEEcCC
Confidence 34899998887643333321 112222 68888873
No 6
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=15.92 E-value=43 Score=26.25 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.1
Q ss_pred hhHHHhhcCCccccccceeEEe
Q 022849 141 SLLYRFVNGDDAFRNQRFKIVN 162 (291)
Q Consensus 141 ~Ll~rFl~gDd~fRn~RfKLIp 162 (291)
-.|++|+.||-.|+..|=|..|
T Consensus 52 ~MLe~Fla~DR~F~kark~~~p 73 (77)
T COG5639 52 HMLEAFLAGDRGFAKARKKAAP 73 (77)
T ss_pred HHHHHHHhccHHHHHHHHhcCC
Confidence 5799999999999988866544
No 7
>COG3522 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=15.59 E-value=2.5e+02 Score=28.91 Aligned_cols=69 Identities=25% Similarity=0.272 Sum_probs=43.4
Q ss_pred eEEEEEeeCCCCCchhhHHHhhcCCccccccceeEEeeeccchhHHHHhhcCCCc-ccccceeeeeEeeCCCEEEEEEE
Q 022849 126 SAVFYFATEDPIPLGSLLYRFVNGDDAFRNQRFKIVNRIVKGPWIVKKAVGNYSA-CLLGKALTCNYHRGPNYLEIDVD 203 (291)
Q Consensus 126 s~V~Yf~~~~~~~~~~Ll~rFl~gDd~fRn~RfKLIp~Vv~gpwiVr~aVG~~~~-~llGk~l~~~y~~g~nYlEiDvD 203 (291)
+..||++++...+...|-++|.. ++|+ ..+.+-+-+|+.....-|- ++---+-++-|+-|..|||+|-+
T Consensus 344 ~a~fvLaV~A~~p~e~Lr~~f~~--------q~Kv-ga~e~i~~Lv~~~LPGipl~plp~~PrqiPy~~g~~Yf~ld~~ 413 (446)
T COG3522 344 SASFVLAVRADMPAEQLRRQFPQ--------QTKV-GAPEKIRELVNVQLPGIPLRPLPVAPRQIPYHSGYTYFELDKS 413 (446)
T ss_pred cceEEEEEeCCCCHHHHHHHHHH--------hhcc-CChHHHHHHHHhcCCCCccccCCCCCccccccCCcEEEEEeCC
Confidence 78899999999999999888884 3332 1222222344444433110 23333347889999999999854
No 8
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=14.80 E-value=1.6e+02 Score=22.31 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.9
Q ss_pred cceeeeeEeeCCCEEEEEE
Q 022849 184 GKALTCNYHRGPNYLEIDV 202 (291)
Q Consensus 184 Gk~l~~~y~~g~nYlEiDv 202 (291)
=.|..+-||+|-+|.|++=
T Consensus 34 FDPFE~cyyrgGsfwEieS 52 (64)
T PF03622_consen 34 FDPFEVCYYRGGSFWEIES 52 (64)
T ss_pred cCCeeEEEEecCcEEEeec
Confidence 4567899999999999973
No 9
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=13.25 E-value=2.7e+02 Score=18.91 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=24.8
Q ss_pred CCCEEEEEEEcCchHHHHHHHH-HhhcccceEEEeeeeeeecCCcccc
Q 022849 194 GPNYLEIDVDIASSTIASAILH-LALGYVTSVTIDMGFLVESQAEDEL 240 (291)
Q Consensus 194 g~nYlEiDvDI~sS~vA~~i~~-l~~g~~k~lvvD~gf~IEg~~eeEL 240 (291)
+-.|.++|+|-... .+..+.. .-...+..++++ |-.+.|-++++|
T Consensus 24 ~i~~~~vdi~~~~~-~~~~~~~~~~~~~vP~~~~~-~~~~~g~~~~~i 69 (74)
T TIGR02196 24 GIAFEEIDVEKDSA-AREEVLKVLGQRGVPVIVIG-HKIIVGFDPEKL 69 (74)
T ss_pred CCeEEEEeccCCHH-HHHHHHHHhCCCcccEEEEC-CEEEeeCCHHHH
Confidence 34677877764332 2222222 223466777776 777777655544
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=12.91 E-value=1.4e+02 Score=29.94 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=50.3
Q ss_pred CCEEEEEEEcCc-hHHHHHHHHHhhcccceE-EEeeeeeeecCCccccccc-------eeceEEecccCCCcc
Q 022849 195 PNYLEIDVDIAS-STIASAILHLALGYVTSV-TIDMGFLVESQAEDELPER-------LLGAVRVCQMEMSSA 258 (291)
Q Consensus 195 ~nYlEiDvDI~s-S~vA~~i~~l~~g~~k~l-vvD~gf~IEg~~eeELPE~-------lLG~vRl~~lD~~~A 258 (291)
+.|-+||++=.+ +.=|...+..++...+.| .+++.=..-|+-.+|+||. |+||-+|..+|+++-
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 578888888776 556666666666666665 6888888999999999986 578889999998764
Done!