Query 022849
Match_columns 291
No_of_seqs 118 out of 224
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 41.7 7.7 0.00026 25.4 0.7 18 223-240 15-32 (37)
2 3bqa_A Sensor protein PHOQ; hi 11.4 46 0.0016 28.0 -0.3 23 188-210 68-90 (148)
3 2zou_A Spondin-1; beta-sandwic 8.8 1.3E+02 0.0044 24.5 1.6 24 228-251 54-80 (149)
4 2dgb_A Hypothetical protein PU 8.5 1.6E+02 0.0055 21.7 1.8 44 193-241 39-84 (84)
5 2yy8_A ATRM56, UPF0106 protein 8.4 1.3E+02 0.0045 26.4 1.5 22 142-163 141-165 (201)
6 3coo_A Spondin-1; reelin-N dom 7.5 1.2E+02 0.0042 25.8 0.9 24 228-251 69-95 (180)
7 3dwl_E Actin-related protein 2 7.4 92 0.0031 26.9 0.0 37 112-148 99-135 (174)
8 2o3a_A UPF0106 protein AF_0751 6.3 2.2E+02 0.0074 24.6 1.8 21 142-163 138-161 (178)
9 2jxx_A Nfatc2-interacting prot 6.1 4.3E+02 0.015 20.0 3.3 33 115-148 26-58 (97)
10 1wm3_A Ubiquitin-like protein 5.5 7.7E+02 0.026 16.8 4.4 32 115-148 2-33 (72)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=41.72 E-value=7.7 Score=25.44 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.0
Q ss_pred eEEEeeeeeeecCCcccc
Q 022849 223 SVTIDMGFLVESQAEDEL 240 (291)
Q Consensus 223 ~lvvD~gf~IEg~~eeEL 240 (291)
++..|+||.++...+|.+
T Consensus 15 SVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 15 SVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEeccccccCCcchhhh
Confidence 689999999998776655
No 2
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=11.39 E-value=46 Score=27.96 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=17.2
Q ss_pred eeeEeeCCCEEEEEEEcCchHHH
Q 022849 188 TCNYHRGPNYLEIDVDIASSTIA 210 (291)
Q Consensus 188 ~~~y~~g~nYlEiDvDI~sS~vA 210 (291)
+-.|-..++|+|||.|++.|...
T Consensus 68 ~~eWLkk~gf~Eidtd~~~s~~~ 90 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVNDTSLL 90 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHHHHHH
T ss_pred CHHHhcCCCcEEEecCcchHHHH
Confidence 44556667999999999986443
No 3
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=8.85 E-value=1.3e+02 Score=24.52 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=19.1
Q ss_pred eeeeeecCCcccc---ccceeceEEec
Q 022849 228 MGFLVESQAEDEL---PERLLGAVRVC 251 (291)
Q Consensus 228 ~gf~IEg~~eeEL---PE~lLG~vRl~ 251 (291)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 6999999887654 56789999874
No 4
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=8.48 E-value=1.6e+02 Score=21.69 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=22.6
Q ss_pred eCCCEEEEEEEcCchHH-HHHHHHHhhcccce-EEEeeeeeeecCCccccc
Q 022849 193 RGPNYLEIDVDIASSTI-ASAILHLALGYVTS-VTIDMGFLVESQAEDELP 241 (291)
Q Consensus 193 ~g~nYlEiDvDI~sS~v-A~~i~~l~~g~~k~-lvvD~gf~IEg~~eeELP 241 (291)
+--.|||++++..+..- ...+-.+| -.+-+ ++=|.-+-++ +|||
T Consensus 39 R~gK~~~l~~~~~~~~~a~~~v~~~~-~LLaNpVie~y~~~~~----~~~~ 84 (84)
T 2dgb_A 39 RVGKVLEIVFPAENLLEAEEKAKAMG-ALLANPVMEVYALEAL----KELP 84 (84)
T ss_dssp EEEEEEEEEEECSSHHHHHHHHHHHH-HHHSCTTTEEEEEEEE----EEEC
T ss_pred EEEEEEEEEecCCCHHHHHHHHHHHH-HHhCCccceEEEEEEe----cCCC
Confidence 33568899999665333 23344555 43333 3333333333 6666
No 5
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=8.39 E-value=1.3e+02 Score=26.42 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=18.6
Q ss_pred hHHHhhcC---CccccccceeEEee
Q 022849 142 LLYRFVNG---DDAFRNQRFKIVNR 163 (291)
Q Consensus 142 Ll~rFl~g---Dd~fRn~RfKLIp~ 163 (291)
+|.|+++| +-+|-|.++|+||.
T Consensus 141 FLDrl~~G~eL~~ef~~Ak~~ViP~ 165 (201)
T 2yy8_A 141 LLDRLLEGKGLKKEFKGAKIKIVPQ 165 (201)
T ss_dssp HHHHHTTTGGGGCCCSSCSEEECCC
T ss_pred HHHHhcCCcchhhccCCCcEEEeec
Confidence 67788887 46999999999996
No 6
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=7.49 E-value=1.2e+02 Score=25.78 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=19.2
Q ss_pred eeeeeecCCcccc---ccceeceEEec
Q 022849 228 MGFLVESQAEDEL---PERLLGAVRVC 251 (291)
Q Consensus 228 ~gf~IEg~~eeEL---PE~lLG~vRl~ 251 (291)
.||+||++.++.. +...+|.+.+.
T Consensus 69 ~GFlLqAr~~~~~~~~~~~~vGtF~~~ 95 (180)
T 3coo_A 69 RGFTLIALRENREGDKEEDHAGTFQII 95 (180)
T ss_dssp SCCEEEEEETTCCSSSGGGBCSEEECS
T ss_pred eEEEEEEEcCCCCccCCCCceeEEEec
Confidence 5999999887664 56789999864
No 7
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=7.35 E-value=92 Score=26.85 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=0.0
Q ss_pred EEEEEEEecCCCCceEEEEEeeCCCCCchhhHHHhhc
Q 022849 112 IFAVNLQVPGKDQHSAVFYFATEDPIPLGSLLYRFVN 148 (291)
Q Consensus 112 ~fiVNlqlP~~~~~s~V~Yf~~~~~~~~~~Ll~rFl~ 148 (291)
+=+=||-+||.+|+-+--+|..+..-.+..+|+.|+.
T Consensus 99 lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~ 135 (174)
T 3dwl_E 99 LALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLT 135 (174)
T ss_dssp -------------------------------------
T ss_pred HHHhcCCCCCCCCCCccccccCCCChhHHHHHHHHHH
Confidence 4455789999999999999987754444455555553
No 8
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=6.34 E-value=2.2e+02 Score=24.59 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=17.7
Q ss_pred hHHHhhcC---CccccccceeEEee
Q 022849 142 LLYRFVNG---DDAFRNQRFKIVNR 163 (291)
Q Consensus 142 Ll~rFl~g---Dd~fRn~RfKLIp~ 163 (291)
.|.|++ | +-+|-|.++|+||.
T Consensus 138 FLDrl~-G~el~~~f~~ak~~ViP~ 161 (178)
T 2o3a_A 138 FLDRVL-GKVFDISFDDAKIKVIPS 161 (178)
T ss_dssp HHHHHT-CCTTTCCCTTCSSEEECC
T ss_pred HHHHhh-chHHHhccCCCcEEEeec
Confidence 677888 7 46999999999995
No 9
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=6.11 E-value=4.3e+02 Score=20.04 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEecCCCCceEEEEEeeCCCCCchhhHHHhhc
Q 022849 115 VNLQVPGKDQHSAVFYFATEDPIPLGSLLYRFVN 148 (291)
Q Consensus 115 VNlqlP~~~~~s~V~Yf~~~~~~~~~~Ll~rFl~ 148 (291)
|||.|-+..+. -.++|++...++...|+..|++
T Consensus 26 I~LkV~~~dg~-~~v~fkIk~~t~l~kLm~aY~~ 58 (97)
T 2jxx_A 26 LQLRVQGKEKH-QTLEVSLSRDSPLKTLMSHYEE 58 (97)
T ss_dssp EEEEEEESSSS-CEEEEEEETTSCHHHHHHHHHH
T ss_pred EEEEEEcCCCC-EEEEEEECCCChHHHHHHHHHH
Confidence 46666544332 3778999888999999999986
No 10
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=5.46 E-value=7.7e+02 Score=16.80 Aligned_cols=32 Identities=31% Similarity=0.593 Sum_probs=24.4
Q ss_pred EEEEecCCCCceEEEEEeeCCCCCchhhHHHhhc
Q 022849 115 VNLQVPGKDQHSAVFYFATEDPIPLGSLLYRFVN 148 (291)
Q Consensus 115 VNlqlP~~~~~s~V~Yf~~~~~~~~~~Ll~rFl~ 148 (291)
+||.|.+..|- .++|.+....+...|+..|.+
T Consensus 2 i~lkV~~~~g~--~v~~~v~~~t~l~kl~~~y~~ 33 (72)
T 1wm3_A 2 INLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCE 33 (72)
T ss_dssp EEEEEECTTSC--EEEEEECTTSCTHHHHHHHHH
T ss_pred EEEEEECCCCC--EEEEEECCCChHHHHHHHHHH
Confidence 56667664443 568999888888999999986
Done!