Query 022850
Match_columns 291
No_of_seqs 138 out of 620
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2928 Uncharacterized conser 100.0 6.9E-52 1.5E-56 373.8 21.0 193 56-277 4-206 (222)
2 PF04367 DUF502: Protein of un 100.0 1.4E-28 3E-33 200.7 12.3 105 106-239 1-108 (108)
3 PRK15350 type III secretion sy 89.3 5.9 0.00013 31.9 9.9 78 57-141 9-86 (88)
4 TIGR01402 fliQ flagellar biosy 88.6 6.4 0.00014 31.7 9.6 79 57-142 9-87 (88)
5 PRK05700 fliQ flagellar biosyn 88.4 6.9 0.00015 31.6 9.7 79 56-141 8-86 (89)
6 PRK06010 fliQ flagellar biosyn 87.4 12 0.00027 30.1 10.6 78 57-141 9-86 (88)
7 TIGR02120 GspF general secreti 86.8 9.2 0.0002 37.2 11.5 23 127-149 242-264 (399)
8 TIGR01403 fliQ_rel_III type II 86.8 12 0.00026 29.7 10.0 77 57-140 5-81 (81)
9 PRK12781 fliQ flagellar biosyn 86.3 16 0.00034 29.5 10.6 79 56-141 8-86 (88)
10 cd01277 HINT_subgroup HINT (hi 86.2 1.4 3.1E-05 34.2 4.6 41 223-263 19-60 (103)
11 COG1987 FliQ Flagellar biosynt 82.6 17 0.00037 29.5 9.3 75 60-141 12-86 (89)
12 cd01275 FHIT FHIT (fragile his 82.3 2.4 5.3E-05 34.7 4.6 44 223-266 19-63 (126)
13 COG1459 PulF Type II secretory 82.0 8.5 0.00018 38.5 9.1 23 126-148 238-260 (397)
14 PRK15333 type III secretion sy 81.5 25 0.00054 28.3 9.8 78 57-141 7-84 (86)
15 cd00468 HIT_like HIT family: H 81.4 2.4 5.3E-05 31.6 3.9 42 223-264 3-45 (86)
16 COG4794 EscS Type III secretor 78.9 30 0.00065 28.1 9.5 80 57-143 9-88 (89)
17 PF01230 HIT: HIT domain; Int 76.9 2.8 6E-05 32.7 3.1 41 223-263 11-52 (98)
18 PRK10573 type IV pilin biogene 76.3 17 0.00036 35.5 9.0 30 129-158 243-278 (399)
19 COG1684 FliR Flagellar biosynt 75.2 37 0.00079 32.4 10.6 45 46-90 163-207 (258)
20 cd01276 PKCI_related Protein K 74.1 3.7 8.1E-05 32.1 3.2 34 223-256 19-53 (104)
21 PRK12772 bifunctional flagella 71.9 40 0.00086 35.7 11.0 40 51-90 165-204 (609)
22 PRK09824 PTS system beta-gluco 71.0 37 0.0008 36.1 10.5 81 69-152 219-301 (627)
23 cd01278 aprataxin_related apra 67.8 9.8 0.00021 29.8 4.4 36 223-258 21-57 (104)
24 PRK09796 PTS system cellobiose 66.4 52 0.0011 33.8 10.2 85 68-155 220-306 (472)
25 PRK09765 PTS system 2-O-a-mann 66.1 27 0.00058 36.9 8.3 70 69-140 381-456 (631)
26 PRK11007 PTS system trehalose( 65.1 46 0.00099 34.2 9.5 86 68-156 231-319 (473)
27 PF01311 Bac_export_1: Bacteri 64.7 1.1E+02 0.0024 28.3 11.3 43 48-90 163-205 (249)
28 TIGR01996 PTS-II-BC-sucr PTS s 64.4 65 0.0014 32.7 10.5 85 69-156 230-316 (461)
29 TIGR01992 PTS-IIBC-Tre PTS sys 63.4 63 0.0014 32.9 10.1 85 69-156 233-319 (462)
30 PRK09586 murP PTS system N-ace 61.2 67 0.0015 33.0 10.0 83 68-154 230-313 (476)
31 PF01313 Bac_export_3: Bacteri 59.9 83 0.0018 24.7 9.1 71 56-133 5-75 (76)
32 TIGR02002 PTS-II-BC-glcB PTS s 59.2 63 0.0014 33.3 9.4 87 69-156 135-225 (502)
33 PRK10687 purine nucleoside pho 57.1 14 0.0003 30.7 3.6 36 223-258 22-58 (119)
34 PRK15349 type III secretion sy 56.8 1.5E+02 0.0032 27.8 10.8 40 51-90 170-209 (259)
35 PRK11404 putative PTS system 56.0 49 0.0011 34.0 8.0 68 68-138 228-301 (482)
36 PF02674 Colicin_V: Colicin V 54.4 87 0.0019 25.7 8.0 79 61-139 20-103 (146)
37 TIGR02004 PTS-IIBC-malX PTS sy 53.4 1.6E+02 0.0035 30.5 11.3 99 69-185 139-241 (517)
38 COG3768 Predicted membrane pro 52.0 73 0.0016 31.6 8.0 63 53-125 58-122 (350)
39 TIGR01427 PTS_IIC_fructo PTS s 51.2 1.6E+02 0.0034 29.1 10.3 19 58-76 15-33 (346)
40 PRK15083 PTS system mannitol-s 50.8 40 0.00088 35.6 6.6 82 68-152 101-189 (639)
41 PF05552 TM_helix: Conserved T 50.8 39 0.00085 24.0 4.6 26 108-133 19-44 (53)
42 TIGR01427 PTS_IIC_fructo PTS s 50.7 84 0.0018 30.9 8.3 72 68-140 112-185 (346)
43 TIGR01995 PTS-II-ABC-beta PTS 48.5 1.5E+02 0.0033 31.3 10.4 82 69-153 211-294 (610)
44 TIGR02872 spore_ytvI sporulati 45.6 2.5E+02 0.0055 26.0 11.3 19 123-141 72-90 (341)
45 TIGR00851 mtlA PTS system, man 45.5 1.9E+02 0.0041 28.3 9.9 83 68-153 93-182 (338)
46 PRK15071 lipopolysaccharide AB 44.5 1.1E+02 0.0024 29.1 8.0 39 51-89 2-40 (356)
47 PF08566 Pam17: Mitochondrial 43.9 2.5E+02 0.0054 25.5 9.7 37 97-134 72-108 (173)
48 COG2177 FtsX Cell division pro 42.4 2.5E+02 0.0054 27.2 10.0 59 67-125 228-287 (297)
49 COG4597 BatB ABC-type amino ac 42.0 1.3E+02 0.0028 30.0 7.9 48 109-156 109-156 (397)
50 COG0537 Hit Diadenosine tetrap 41.1 47 0.001 28.2 4.4 42 223-264 20-62 (138)
51 COG3125 CyoD Heme/copper-type 40.9 2.2E+02 0.0048 24.0 8.5 23 54-76 17-39 (111)
52 TIGR00852 pts-Glc PTS system, 40.9 2.2E+02 0.0048 26.8 9.3 87 68-156 66-154 (289)
53 PF11947 DUF3464: Protein of u 39.1 2.8E+02 0.006 24.6 8.9 64 46-123 53-116 (153)
54 PF01594 UPF0118: Domain of un 38.8 3.2E+02 0.007 25.3 10.1 87 66-156 1-100 (327)
55 COG2981 CysZ Uncharacterized p 38.4 2E+02 0.0043 27.5 8.3 56 67-122 27-90 (250)
56 PF10329 DUF2417: Region of un 36.6 2.6E+02 0.0056 26.4 8.8 15 78-92 50-64 (232)
57 TIGR01400 fliR flagellar biosy 35.5 3.7E+02 0.0079 25.0 11.7 40 51-90 159-198 (245)
58 PF14584 DUF4446: Protein of u 35.3 3.1E+02 0.0066 24.0 9.4 44 188-231 76-127 (151)
59 TIGR01183 ntrB nitrate ABC tra 34.5 3.4E+02 0.0073 24.3 10.7 55 62-117 26-80 (202)
60 TIGR00822 EII-Sor PTS system, 34.2 3.4E+02 0.0073 26.0 9.4 28 101-128 188-223 (265)
61 PF07670 Gate: Nucleoside reco 33.8 1.2E+02 0.0027 23.6 5.5 33 67-99 2-40 (109)
62 PF11872 DUF3392: Protein of u 33.7 2.8E+02 0.0061 23.1 7.8 61 62-122 44-105 (106)
63 PRK10110 bifunctional PTS syst 33.5 4.1E+02 0.009 27.7 10.6 97 69-185 148-250 (530)
64 PF06596 PsbX: Photosystem II 33.0 96 0.0021 21.6 4.0 25 54-78 5-29 (39)
65 PF14257 DUF4349: Domain of un 32.5 76 0.0017 29.2 4.7 11 47-57 219-229 (262)
66 COG4956 Integral membrane prot 32.4 2.5E+02 0.0054 28.1 8.2 28 129-156 66-93 (356)
67 PRK10478 putative PTS system f 31.7 2.6E+02 0.0055 28.0 8.4 42 103-145 100-144 (359)
68 TIGR02003 PTS-II-BC-unk1 PTS s 31.5 4.3E+02 0.0093 27.9 10.4 100 69-185 142-249 (548)
69 PF00873 ACR_tran: AcrB/AcrD/A 31.3 1.4E+02 0.003 33.1 7.1 82 65-151 865-961 (1021)
70 PF09527 ATPase_gene1: Putativ 31.2 1.1E+02 0.0024 21.6 4.4 18 65-82 7-24 (55)
71 PF06716 DUF1201: Protein of u 30.9 1.5E+02 0.0032 21.7 4.9 31 53-85 4-34 (54)
72 PRK10845 colicin V production 30.7 3.4E+02 0.0074 23.6 8.2 34 112-151 76-109 (162)
73 PRK15065 PTS system mannose-sp 30.5 4.3E+02 0.0093 25.2 9.4 27 101-127 189-223 (262)
74 COG3763 Uncharacterized protei 30.0 1.2E+02 0.0026 23.8 4.6 47 104-156 5-51 (71)
75 PRK12780 fliR flagellar biosyn 29.7 4.7E+02 0.01 24.4 12.2 40 51-90 169-208 (251)
76 TIGR01401 fliR_like_III type I 29.2 4.8E+02 0.01 24.4 11.0 41 50-90 165-205 (253)
77 TIGR00439 ftsX putative protei 28.5 4.9E+02 0.011 25.0 9.6 27 107-133 281-307 (309)
78 COG3366 Uncharacterized protei 28.2 5.9E+02 0.013 25.1 10.2 66 37-105 156-223 (311)
79 PF11241 DUF3043: Protein of u 28.0 1.7E+02 0.0036 26.4 5.9 29 52-82 65-94 (170)
80 PRK10494 hypothetical protein; 27.7 4.3E+02 0.0094 24.7 8.9 64 59-134 5-68 (259)
81 COG4171 SapC ABC-type antimicr 27.6 5.7E+02 0.012 24.7 9.5 100 43-152 81-184 (296)
82 PF11023 DUF2614: Protein of u 27.4 1.4E+02 0.003 25.4 4.9 21 103-123 47-67 (114)
83 PRK01844 hypothetical protein; 26.5 1.4E+02 0.0029 23.5 4.4 41 110-155 10-50 (72)
84 COG3162 Predicted membrane pro 26.5 2.6E+02 0.0057 23.3 6.3 26 69-94 26-51 (102)
85 KOG2568 Predicted membrane pro 26.1 3.5E+02 0.0076 28.5 8.5 27 67-93 342-369 (518)
86 PRK14762 membrane protein; Pro 26.0 1.1E+02 0.0023 19.6 3.0 15 109-123 7-21 (27)
87 PRK05701 fliR flagellar biosyn 25.6 5.4E+02 0.012 23.8 11.2 39 52-90 162-200 (242)
88 COG1286 CvpA Uncharacterized m 25.0 5E+02 0.011 23.2 9.6 23 62-84 24-46 (182)
89 PRK09757 PTS system N-acetylga 24.8 6.1E+02 0.013 24.2 9.8 25 101-125 189-221 (267)
90 PF03609 EII-Sor: PTS system s 24.0 5.4E+02 0.012 23.9 8.7 66 62-127 145-223 (238)
91 PF12841 YvrJ: YvrJ protein fa 23.7 1.3E+02 0.0029 20.6 3.4 24 70-93 8-31 (38)
92 PF12729 4HB_MCP_1: Four helix 23.7 3.5E+02 0.0076 21.5 6.7 41 104-145 10-51 (181)
93 PRK11720 galactose-1-phosphate 22.7 1.2E+02 0.0026 29.8 4.3 66 197-262 161-255 (346)
94 PF14018 DUF4234: Domain of un 22.3 3.3E+02 0.0072 20.2 8.9 21 69-89 9-29 (75)
95 PRK00665 petG cytochrome b6-f 22.3 1.2E+02 0.0026 20.9 2.9 21 104-124 7-27 (37)
96 PF03739 YjgP_YjgQ: Predicted 22.2 3.8E+02 0.0083 25.1 7.5 30 60-89 5-34 (354)
97 PF14402 7TM_transglut: 7 tran 22.2 1.6E+02 0.0035 29.0 5.0 60 67-126 123-185 (313)
98 PRK05886 yajC preprotein trans 22.2 85 0.0018 26.2 2.7 11 148-158 31-41 (109)
99 PRK05415 hypothetical protein; 21.6 6.4E+02 0.014 25.1 9.1 24 59-83 67-90 (341)
100 PRK00523 hypothetical protein; 21.2 2.2E+02 0.0047 22.4 4.6 27 112-141 13-40 (72)
101 PF07290 DUF1449: Protein of u 21.2 4.3E+02 0.0092 24.3 7.3 21 111-131 102-122 (202)
102 PF11118 DUF2627: Protein of u 21.1 4.1E+02 0.009 21.1 6.2 30 61-90 3-32 (77)
103 TIGR00209 galT_1 galactose-1-p 21.0 1.5E+02 0.0031 29.2 4.5 66 197-262 161-255 (347)
104 PF03672 UPF0154: Uncharacteri 21.0 1.3E+02 0.0029 23.0 3.4 29 110-141 3-31 (64)
105 CHL00008 petG cytochrome b6/f 20.9 1.3E+02 0.0029 20.7 2.9 21 104-124 7-27 (37)
106 PF02419 PsbL: PsbL protein; 20.9 1.6E+02 0.0034 20.4 3.3 20 105-124 16-35 (37)
107 TIGR00915 2A0602 The (Largely 20.9 3.2E+02 0.0069 30.7 7.6 44 104-149 922-966 (1044)
108 PF03596 Cad: Cadmium resistan 20.8 2.3E+02 0.0051 25.7 5.5 42 104-153 34-75 (191)
109 PF02355 SecD_SecF: Protein ex 20.5 6.2E+02 0.013 22.6 9.3 70 44-133 118-187 (189)
110 PRK10160 taurine transporter s 20.4 7E+02 0.015 23.2 8.8 35 82-117 107-141 (275)
No 1
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-52 Score=373.82 Aligned_cols=193 Identities=30% Similarity=0.655 Sum_probs=174.5
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhh-------hhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 022850 56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIY-------AQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASV 128 (291)
Q Consensus 56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~-------~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l 128 (291)
..++|+|+|||++++|+++|+|+++|+++++|+++.|.+ .+++.+++|+|+++.+++++++|+++++.+|+++
T Consensus 4 ~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~l 83 (222)
T COG2928 4 KRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRSL 83 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 345688999999999999999999999999999999854 2346779999999999999999999999999999
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeeecccccccceEEEEEcCCCCeeEE
Q 022850 129 LSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVITDQNTQAFKEVAIIRHPRIGEYAF 208 (291)
Q Consensus 129 ~~~~E~~l~rIPlVk~IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~~~~~~~fk~VVlV~~P~~g~~~i 208 (291)
++++|++|.|||++|+||+++||+++++.+ +++.+||+||+|||||+|+|++
T Consensus 84 ~~~~d~~L~RiPlv~~IY~s~kqi~etll~----------------------------~~~~sfk~vvlVefP~~G~~~i 135 (222)
T COG2928 84 LSLGDSLLRRIPLVKSIYKSAKQVVETLLS----------------------------DQSGSFKQVVLVEFPRRGIWAI 135 (222)
T ss_pred HHHHHHHHccCccHHHHHHHHHHHHHHHHh----------------------------cCCccceeeEEEECCCCCcEEE
Confidence 999999999999999999999999999975 3455999999999999999999
Q ss_pred EEeccccc--ccccCCCcceEEEEecCCCC-CceeEEEEeCCCeecCCCCHHHHHHHHhhccccCCCccccc
Q 022850 209 GFITSSVV--LQNYSGEEELCCVYVPTNHL-YIGDIFLINTKDVIRPNLSVREGIEIVVSGGMSMPQILSTL 277 (291)
Q Consensus 209 GFvT~~~~--~~~~~~~e~~v~VfVPtsp~-~sG~l~lV~~~dV~~lDmSveeAmk~viSgGv~~p~~~~~~ 277 (291)
||+|++.. .+. ..++++++||+||+|| |+||+.+||+||++++|||+|||+|+++|||+..|+.....
T Consensus 136 ~fvtg~~~~e~~~-~~~~~~v~VfvPTTPNPTsGfl~~Vpkedi~~ldmtvEda~k~iIS~G~v~p~~~~~~ 206 (222)
T COG2928 136 AFVTGEKAGELKE-KEGRPMVAVFVPTTPNPTSGFLLLVPKEDIVPLDMTVEDALKYIISGGVVAPDSLPAK 206 (222)
T ss_pred EEeccCCCcchhc-ccCCceEEEEcCCCCCCCcceEEEEEHHHceeccccHHHHhheeeeccccCCCccccc
Confidence 99999953 333 3357999999999996 79999999999999999999999999999999999855443
No 2
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=99.96 E-value=1.4e-28 Score=200.66 Aligned_cols=105 Identities=32% Similarity=0.614 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeee
Q 022850 106 FITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVIT 185 (291)
Q Consensus 106 ~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~ 185 (291)
+++++++||++|+++++++|+++++++|+++.|||++|+||+++||+++++++
T Consensus 1 ~l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~--------------------------- 53 (108)
T PF04367_consen 1 FLILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSG--------------------------- 53 (108)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhh---------------------------
Confidence 36778899999999999999999999999999999999999999999999986
Q ss_pred cccccccceEEEEEcCCCCeeEEEEecccccc--cccCCCcceEEEEecCCCC-Cce
Q 022850 186 DQNTQAFKEVAIIRHPRIGEYAFGFITSSVVL--QNYSGEEELCCVYVPTNHL-YIG 239 (291)
Q Consensus 186 ~~~~~~fk~VVlV~~P~~g~~~iGFvT~~~~~--~~~~~~e~~v~VfVPtsp~-~sG 239 (291)
+++++|++||+||||++|.|++||+|++... +... ++++++||+||||| ++|
T Consensus 54 -~~~~~f~~vVlV~~p~~g~~~igFvT~~~~~~~~~~~-~~~~v~VfvPtsPnPtsG 108 (108)
T PF04367_consen 54 -DKKKSFKKVVLVEFPRPGMYVIGFVTGEDPGELPGKT-GEEMVAVFVPTSPNPTSG 108 (108)
T ss_pred -cccccCCeEEEEEecCCCcEEEEEEeccCcchhhccC-CCCEEEEEeCCCCCCCCC
Confidence 3344499999999999999999999999742 2222 45999999999997 676
No 3
>PRK15350 type III secretion system protein SsaS; Provisional
Probab=89.29 E-value=5.9 Score=31.91 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=55.9
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850 57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI 136 (291)
Q Consensus 57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l 136 (291)
..++.+...+.+.+|+.+.-.++.-++.++...- .++-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus 9 l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~T-------QIQEqTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~if 81 (88)
T PRK15350 9 FVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALT-------QIQDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIM 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688899999999988888766665443321 123334556555566666677788899999999999999
Q ss_pred ccccc
Q 022850 137 KRMPF 141 (291)
Q Consensus 137 ~rIPl 141 (291)
.+||-
T Consensus 82 ~~i~~ 86 (88)
T PRK15350 82 LRIGE 86 (88)
T ss_pred Hhhhh
Confidence 99983
No 4
>TIGR01402 fliQ flagellar biosynthetic protein FliQ. This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.
Probab=88.60 E-value=6.4 Score=31.69 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=56.9
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850 57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI 136 (291)
Q Consensus 57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l 136 (291)
..++.+...+.+..|+.+.-.++.-+++.+...- .++-.-+.|+-=++.++++-++...|.++.+.++.++++
T Consensus 9 l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~f 81 (88)
T TIGR01402 9 LGREAIWLTLLLSAPVLLVALVVGLVISIFQAAT-------QIQEQTLSFIPKIIAILLALALLGPWMLTKLLDFTREIF 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688899999999988877766665443321 123334566655566667777788999999999999999
Q ss_pred ccccch
Q 022850 137 KRMPFV 142 (291)
Q Consensus 137 ~rIPlV 142 (291)
.+||-+
T Consensus 82 ~~i~~~ 87 (88)
T TIGR01402 82 QRIPQG 87 (88)
T ss_pred HHhhhh
Confidence 999863
No 5
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated
Probab=88.36 E-value=6.9 Score=31.56 Aligned_cols=79 Identities=11% Similarity=0.237 Sum_probs=56.8
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 022850 56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWF 135 (291)
Q Consensus 56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~ 135 (291)
...++.+...+.+..|+.++-.++.-+++++...- .++-.-++|+-=++.++++=++...|.++.+.++.+++
T Consensus 8 ~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i 80 (89)
T PRK05700 8 DLFREAMKVALMLAAPLLLVALVVGLVVSIFQAAT-------QINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999988887766665443321 12333456655555666666778899999999999999
Q ss_pred hccccc
Q 022850 136 IKRMPF 141 (291)
Q Consensus 136 l~rIPl 141 (291)
+.+||-
T Consensus 81 f~~i~~ 86 (89)
T PRK05700 81 FSNIPT 86 (89)
T ss_pred HHHHHh
Confidence 999985
No 6
>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=87.40 E-value=12 Score=30.08 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850 57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI 136 (291)
Q Consensus 57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l 136 (291)
..++.+...+.+.+|+.+.-.++.-++..+...- .++-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus 9 l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~if 81 (88)
T PRK06010 9 IVRDAIWTVLVASGPAVLAAMVVGVAIALFQALT-------QIQEMTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLIY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688899999999988887766665443321 123334555554555666666777889999999999999
Q ss_pred ccccc
Q 022850 137 KRMPF 141 (291)
Q Consensus 137 ~rIPl 141 (291)
.+||-
T Consensus 82 ~~i~~ 86 (88)
T PRK06010 82 SRIAG 86 (88)
T ss_pred Hhhcc
Confidence 99983
No 7
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=86.78 E-value=9.2 Score=37.21 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=18.6
Q ss_pred HHHHHHHHhhccccchhHHHHHH
Q 022850 127 SVLSLGEWFIKRMPFVRHIYNAS 149 (291)
Q Consensus 127 ~l~~~~E~~l~rIPlVk~IYsai 149 (291)
..-.+.|+++.|+|+++.+|...
T Consensus 242 ~~r~~~~~~l~kiP~~g~~~~~~ 264 (399)
T TIGR02120 242 AFRLRFDRRLLRLPVIGRLVRGL 264 (399)
T ss_pred HHHHHHHHHHhcccchHHHHHHH
Confidence 44567899999999999888753
No 8
>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.
Probab=86.75 E-value=12 Score=29.71 Aligned_cols=77 Identities=14% Similarity=0.344 Sum_probs=53.7
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850 57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI 136 (291)
Q Consensus 57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l 136 (291)
..++.+...+.+.+|+.+.-.++.-+++++...- .++-.-+.|+-=++.++++=++...|..+.+.++.++++
T Consensus 5 ~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~T-------QIqEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 77 (81)
T TIGR01403 5 LTNQALLLVLILSLPPVLVAAIVGLLVSLLQALT-------QLQDQTLPFAIKLIAVFITLMLTAGWLGAEILNFANQIF 77 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999988888766665443321 123334555554455555556777888899999999999
Q ss_pred cccc
Q 022850 137 KRMP 140 (291)
Q Consensus 137 ~rIP 140 (291)
.+||
T Consensus 78 ~~i~ 81 (81)
T TIGR01403 78 TMIP 81 (81)
T ss_pred hhCC
Confidence 9887
No 9
>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed
Probab=86.30 E-value=16 Score=29.52 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=55.9
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 022850 56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWF 135 (291)
Q Consensus 56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~ 135 (291)
...++.+...+.+-+|+.+.-.++.-++..+... . .++-.-+.|+-=++.++++=++...|.++.+.++.+++
T Consensus 8 ~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~----T---QIQEqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~i 80 (88)
T PRK12781 8 ELVRAAIWTIIVASGPAVGAAMLVGIAIALLQAL----T---QIQEVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEMV 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999998887766666544332 1 12333455555555666666778889999999999999
Q ss_pred hccccc
Q 022850 136 IKRMPF 141 (291)
Q Consensus 136 l~rIPl 141 (291)
+.+||-
T Consensus 81 f~~i~~ 86 (88)
T PRK12781 81 YGRIES 86 (88)
T ss_pred HHhhcc
Confidence 999883
No 10
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=86.18 E-value=1.4 Score=34.18 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+.+.+.+|+|-.|..-|.++++|++.+..+ |++.||...+.
T Consensus 19 e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~ 60 (103)
T cd01277 19 EDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELI 60 (103)
T ss_pred eCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHH
Confidence 467889999999999999999999999874 99998866554
No 11
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.62 E-value=17 Score=29.54 Aligned_cols=75 Identities=15% Similarity=0.294 Sum_probs=53.1
Q ss_pred HHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 022850 60 KKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRM 139 (291)
Q Consensus 60 ~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rI 139 (291)
..+-.+|.+..|+.+.-.++.-++.+.... . .++---+.|+==++.++++-.++..|.++.+.++...+++||
T Consensus 12 ~ai~~~L~l~~P~ll~alvvGLvIsifQA~-----T--QIqEqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~if~~i 84 (89)
T COG1987 12 EAIWLVLMLSAPVLLVALVVGLVISIFQAA-----T--QIQEQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVTIFSNI 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 446678899999988777665555433222 1 123234555555667777888888999999999999999999
Q ss_pred cc
Q 022850 140 PF 141 (291)
Q Consensus 140 Pl 141 (291)
|.
T Consensus 85 ~~ 86 (89)
T COG1987 85 PQ 86 (89)
T ss_pred Hh
Confidence 96
No 12
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=82.34 E-value=2.4 Score=34.67 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=36.0
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHHhhc
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVVSG 266 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~viSg 266 (291)
+++.+.+|+|..|.+.|.++++|++.+..+ |++-||..++.-..
T Consensus 19 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~ 63 (126)
T cd01275 19 RTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLV 63 (126)
T ss_pred eCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHH
Confidence 467889999999988999999999999874 89988877554433
No 13
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.02 E-value=8.5 Score=38.51 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhccccchhHHHHH
Q 022850 126 ASVLSLGEWFIKRMPFVRHIYNA 148 (291)
Q Consensus 126 ~~l~~~~E~~l~rIPlVk~IYsa 148 (291)
.+.-.+.|+++-|+|+++.+...
T Consensus 238 ~~~r~~~~~~llrlP~~g~l~~~ 260 (397)
T COG1459 238 PAGRRRLDRLLLRLPLFGKLVRK 260 (397)
T ss_pred hHHHHHHHhHHhcCCcHHHHHHH
Confidence 35667889999999999988764
No 14
>PRK15333 type III secretion system protein SpaQ; Provisional
Probab=81.53 E-value=25 Score=28.30 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850 57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI 136 (291)
Q Consensus 57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l 136 (291)
..++.+...+.+..|+.+.-.++.-+++.+...- .++-.-+.|+-=++.++++=++...|.++.+.++.++++
T Consensus 7 ~~~~al~~~l~ls~P~L~valvVGlvIsi~QA~T-------QIQEqTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if 79 (86)
T PRK15333 7 AGNKALYLVLILSGWPTIVATIIGLLVGLFQTVT-------QLQEQTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVI 79 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688889999999888777666665443321 123334555555555666666778899999999999999
Q ss_pred ccccc
Q 022850 137 KRMPF 141 (291)
Q Consensus 137 ~rIPl 141 (291)
..+|-
T Consensus 80 ~~~~~ 84 (86)
T PRK15333 80 FLALA 84 (86)
T ss_pred Hhhhc
Confidence 88874
No 15
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=81.37 E-value=2.4 Score=31.60 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=33.9
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeec-CCCCHHHHHHHHh
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIR-PNLSVREGIEIVV 264 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~-lDmSveeAmk~vi 264 (291)
+++.+.+|+|-.|...|-++++|++.+.. .|++.|+..++..
T Consensus 3 e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~ 45 (86)
T cd00468 3 DDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVI 45 (86)
T ss_pred ecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHH
Confidence 46788999999998899999999998876 4898876554443
No 16
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=78.88 E-value=30 Score=28.11 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 022850 57 WASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI 136 (291)
Q Consensus 57 ~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l 136 (291)
+..+.+.-=++.-+|-++.--++.-++ ++++.+. ++ .-.-++|.+=++.++..=++...|+|..++++.|.++
T Consensus 9 ~~~qaL~liLilSlPpvivAsvvGllV----slvQA~T-Qi--QdQTl~f~iKLl~V~~tl~lt~~Wlg~~ll~fa~~i~ 81 (89)
T COG4794 9 LTSQALWLILILSLPPVIVASVVGLLV----SLVQALT-QI--QDQTLPFGIKLLAVSATLFLTAGWLGATLLNFAEQIF 81 (89)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH----HHHHHHH-HH--HHhHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 334444445566677766555544444 4444332 22 1223455554444555556788999999999999999
Q ss_pred ccccchh
Q 022850 137 KRMPFVR 143 (291)
Q Consensus 137 ~rIPlVk 143 (291)
.++|..|
T Consensus 82 ~~~~~~~ 88 (89)
T COG4794 82 LNIPKAR 88 (89)
T ss_pred HHhhhcc
Confidence 9999765
No 17
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=76.89 E-value=2.8 Score=32.69 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=33.8
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+.+.+.+|++..|..-|.++++|++.+..+ |++-++..++.
T Consensus 11 e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~ 52 (98)
T PF01230_consen 11 EDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELM 52 (98)
T ss_dssp E-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHH
Confidence 467788999999988999999999999985 89877766554
No 18
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=76.29 E-value=17 Score=35.49 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHHHhhccccchhHHHH------HHHHHHHHhcC
Q 022850 129 LSLGEWFIKRMPFVRHIYN------ASKQISAAISP 158 (291)
Q Consensus 129 ~~~~E~~l~rIPlVk~IYs------aiKqi~~~~~~ 158 (291)
-.+.++++.|+|+++.+|. -.+++...+..
T Consensus 243 ~~~~~~~l~~iP~~g~~~~~~~~~~f~~~Ls~ll~s 278 (399)
T PRK10573 243 QIREQRLLLRLPLVGSLIRGQKLSQIFTILALTQSA 278 (399)
T ss_pred HHHHHHHHhcCCeecccccccHHHHHHHHHHHHHHc
Confidence 3467899999999987766 44555444443
No 19
>COG1684 FliR Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.22 E-value=37 Score=32.36 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 46 GRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 46 ~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
-.+++...+-.+++..|..|+.+-+|++....+++-.++.+++..
T Consensus 163 ~~~~~~~~l~~~l~~~F~~~l~iAlPii~~lLlvnlalGlv~R~~ 207 (258)
T COG1684 163 LNDNAFLLLAKALSAIFLIGLRLALPIIALLLLVNLALGLLNRLA 207 (258)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788888888999999999999999999999888887777764
No 20
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=74.06 E-value=3.7 Score=32.09 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=28.5
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSV 256 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSv 256 (291)
+++.+.+|+|..|.+.|-++++|++.+..+ |++.
T Consensus 19 e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~ 53 (104)
T cd01276 19 EDDEVLAFHDINPQAPVHILVIPKKHIASLSDATE 53 (104)
T ss_pred ECCCEEEEECCCCCCCCEEEEEecceeCChHHccc
Confidence 467889999999989999999999998764 6654
No 21
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=71.90 E-value=40 Score=35.65 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 51 SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 51 ~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
...+-.+....|..|+.+.+|++++.+++.-.++++....
T Consensus 165 ~~~~~~~~~~~F~~al~lAaP~i~~lll~~~~lGllsR~a 204 (609)
T PRK12772 165 IMHVINVFIQYFYIGIKIAIPIVLIILITDLTLGLISRTV 204 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455667788999999999999999999888888777765
No 22
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=71.04 E-value=37 Score=36.14 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhccccch-hHHH
Q 022850 69 LFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS-VTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFV-RHIY 146 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~-i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlV-k~IY 146 (291)
++|+.++.|+..|+-+|++......++.+ -.|-+.++++ .+.++++|=+ -++++..+-..+.|+.+.-|.+ .-|+
T Consensus 219 ViPiil~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~~pl~l~viGPi-g~~i~~~l~~~i~~l~~~~~~i~g~i~ 295 (627)
T PRK09824 219 VIPIIFSAWLCSILERRLNAWLPSAIKNF--FTPLLCLMVIVPLTFLLIGPL-ATWLSELLAAGYQWLYQAVPAFAGAVM 295 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 78999999999999999988875554432 2445554443 3444444432 2345555555555666555532 2245
Q ss_pred HHHHHH
Q 022850 147 NASKQI 152 (291)
Q Consensus 147 saiKqi 152 (291)
.+.-|+
T Consensus 296 g~~~~~ 301 (627)
T PRK09824 296 GAFWQV 301 (627)
T ss_pred HHHHHH
Confidence 554443
No 23
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=67.78 E-value=9.8 Score=29.81 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=30.3
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
.++.+.+|+|..|..-|-+.++|++.+..+ |++.+|
T Consensus 21 ~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~ 57 (104)
T cd01278 21 EDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKED 57 (104)
T ss_pred eCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhH
Confidence 467889999999988999999999998764 787654
No 24
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=66.41 E-value=52 Score=33.82 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHH
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS-VTFIFLIGVFMSSWLGASVLSLGEWFIKRMP-FVRHI 145 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~-i~lIfliG~l~~~~lg~~l~~~~E~~l~rIP-lVk~I 145 (291)
-++|+.++.|+..|+-++++......++.+ -.|-+-+++. .+.++++|=+ -+++|..+-..+.|+.+..| +..-|
T Consensus 220 sViPiil~v~~~s~vek~~~K~~P~~l~~i--~~P~ltlli~~pl~l~viGPi-g~~i~~~i~~~i~~l~~~~~~i~g~i 296 (472)
T PRK09796 220 TVIPALVMTWCLSYIERWVDRITPAVTKNF--LKPMLIVLIAAPLAILLIGPI-GIWIGSAISALVYTIHGYLGWLSVAI 296 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCHHHHHHH--HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 368999999999999888888764443331 1344444332 2333334322 23344444445555555544 45566
Q ss_pred HHHHHHHHHH
Q 022850 146 YNASKQISAA 155 (291)
Q Consensus 146 YsaiKqi~~~ 155 (291)
+.+.-|+.=.
T Consensus 297 ~g~~~~~lV~ 306 (472)
T PRK09796 297 MGALWPLLVM 306 (472)
T ss_pred HHHHHHHHHH
Confidence 7776665443
No 25
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=66.08 E-value=27 Score=36.93 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhh----c-cchhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcccc
Q 022850 69 LFPIAVTFYITWWFIHFVDGFFSPIYAQL----G-IDIFGLGFITS-VTFIFLIGVFMSSWLGASVLSLGEWFIKRMP 140 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~~~pi~~~l----g-~~ipGlG~l~~-i~lIfliG~l~~~~lg~~l~~~~E~~l~rIP 140 (291)
++|.++..|+..|+.+|++..+ |.-+.+ . .-+|-++++++ ++.++++|-.. +|++..+-+++.++...-+
T Consensus 381 flg~Ii~~~l~gyv~~~l~k~i-p~~~~~~~~~~~~~~Pllt~li~~~l~~~viGp~~-~~i~~~l~~~l~~l~~~~~ 456 (631)
T PRK09765 381 FLGAVVGGLIAGYLMRWVKNHL-RLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPV-AWINNSLTAWLNGLSGSNA 456 (631)
T ss_pred cHHHHHHHHHHHHHHHHHHHHC-CCchhhhhhcCEEeehHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhH
Confidence 5788888888888888888876 432111 1 22566776554 45566888666 7788888888887766443
No 26
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=65.08 E-value=46 Score=34.19 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhc-cc-cchhH
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSV-TFIFLIGVFMSSWLGASVLSLGEWFIK-RM-PFVRH 144 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i-~lIfliG~l~~~~lg~~l~~~~E~~l~-rI-PlVk~ 144 (291)
-++|+.++.|+..|+-+|++......++. .-.|-+.++++. +.++++| =.-++++..+-..++++.. .. ++-.-
T Consensus 231 sViP~Il~v~~~s~iek~l~K~~P~~l~~--i~~Plltlli~~~l~l~viG-Pig~~i~~~i~~~i~~L~~~~~~~ig~~ 307 (473)
T PRK11007 231 QVIPALLAGLALGFIETRLKRIVPDYLYL--VVVPVCSLILAVFLAHALIG-PFGRMIGDGVAFAVKALMTGSFAPIGAA 307 (473)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 57899999999999999998886444442 224556655543 3334666 3344566666677777763 43 45566
Q ss_pred HHHHHHHHHHHh
Q 022850 145 IYNASKQISAAI 156 (291)
Q Consensus 145 IYsaiKqi~~~~ 156 (291)
|+.+.-|+.=.+
T Consensus 308 i~g~~~~~lV~~ 319 (473)
T PRK11007 308 LFGFLYAPLVIT 319 (473)
T ss_pred HHHHHHHHHHHh
Confidence 777777755443
No 27
>PF01311 Bac_export_1: Bacterial export proteins, family 1; InterPro: IPR002010 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "R" here for nomenclature purposes, includes the Salmonella and Shigella SpaR, the Yersinia YscT, Rhizobium Y4YN, and the Erwinia HrcT genes []. The flagellar protein FliR also shares similarity, probably due to evolution of the type III secretion system from the flagellar biosynthetic pathway. ; GO: 0006605 protein targeting, 0016020 membrane
Probab=64.68 E-value=1.1e+02 Score=28.32 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 48 ETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 48 ~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
+.+...+-++..+.|..|+.+.+|++++..++.-.+.++.+..
T Consensus 163 ~~~~~~~~~~~~~~f~~al~lAaP~i~~lll~~l~lG~l~R~~ 205 (249)
T PF01311_consen 163 EEALQFIIKLFGQMFSLALQLAAPVIAALLLVDLALGLLSRAA 205 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5666677777889999999999999999999888887777764
No 28
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=64.41 E-value=65 Score=32.67 Aligned_cols=85 Identities=13% Similarity=0.235 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHH
Q 022850 69 LFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITS-VTFIFLIGVFMSSWLGASVLSLGEWFIKRMP-FVRHIY 146 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~-i~lIfliG~l~~~~lg~~l~~~~E~~l~rIP-lVk~IY 146 (291)
++|..++.|+..|+=++++..+...+..+ -.|-+.++++ ++.++++|. .-.+++..+..+++++.+.-+ +..-||
T Consensus 230 Vip~Il~g~i~~~iek~~~k~~P~~l~~~--~vP~l~~lv~~~l~~~vigp-~~~~i~~~i~~~~~~l~~~~~~i~~~i~ 306 (461)
T TIGR01996 230 VLPVLVAVWILAKIEKFLRKVVPNALDLL--LTPFLTLLITGFLTLLVIGP-IGRWVGDVLTDGLQWLYDLPGGLGGLLF 306 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhhhh--hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 78999999999998778887765554433 2455555444 344445664 345677777788888876543 456688
Q ss_pred HHHHHHHHHh
Q 022850 147 NASKQISAAI 156 (291)
Q Consensus 147 saiKqi~~~~ 156 (291)
....++...+
T Consensus 307 G~l~~~Lv~~ 316 (461)
T TIGR01996 307 GGLYSLIVIT 316 (461)
T ss_pred HHHHHHHHHh
Confidence 8888875554
No 29
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=63.42 E-value=63 Score=32.89 Aligned_cols=85 Identities=9% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHhhccccch-hHHH
Q 022850 69 LFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTF-IFLIGVFMSSWLGASVLSLGEWFIKRMPFV-RHIY 146 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~l-IfliG~l~~~~lg~~l~~~~E~~l~rIPlV-k~IY 146 (291)
++|..++.|+..|+-+|++..+...+..+ -.|-+.+++.+.+ ++++|- .-.+++..+...+.++....|.+ .-||
T Consensus 233 Vip~Il~g~i~~yiek~~~k~lP~~l~~~--~vP~lt~lv~~~l~~~vigP-i~~~i~~~i~~~~~~l~~~~~~i~g~i~ 309 (462)
T TIGR01992 233 VLPALLAGYVLAVIEKWLRKRVPDAIQLL--VVPPVSLLVTGFLAHAIIGP-IGRLIGNGITSGVTALFTSAAWLGGAIF 309 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 48888888888888888877654433332 2455554443333 234452 33445555555566666666644 4588
Q ss_pred HHHHHHHHHh
Q 022850 147 NASKQISAAI 156 (291)
Q Consensus 147 saiKqi~~~~ 156 (291)
.+.-|..=.+
T Consensus 310 G~l~~~lV~~ 319 (462)
T TIGR01992 310 GLLYAPLVIT 319 (462)
T ss_pred HHHHHHHHHh
Confidence 8888876554
No 30
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=61.25 E-value=67 Score=33.01 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHH
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFIT-SVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIY 146 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~-~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IY 146 (291)
-++|+.++.|+..++-++++.+....++.+ -.|-+-+++ ..+.++++|=+ -+|+|..+-..+.|+... ++-.-|+
T Consensus 230 sViPiil~v~~~s~iek~~~K~iP~~l~~i--~~P~ltlli~~p~~l~viGP~-g~~i~~~i~~~~~~l~~~-~~~~~i~ 305 (476)
T PRK09586 230 NIIGVLIAAIAGARIERMVRRFMPDDLDMI--LTSLITLLITGALAFLIIMPL-GGWLFEGMSWLFMHLNSN-PFGCAVL 305 (476)
T ss_pred chHHHHHHHHHHHHHHHHHHhhCHHHHHHH--HHHHHHHHHHHHHHHHhHHhH-HHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 467888888888888888887764443331 133344333 22333344422 234444444444444433 5556667
Q ss_pred HHHHHHHH
Q 022850 147 NASKQISA 154 (291)
Q Consensus 147 saiKqi~~ 154 (291)
.+.-|+.=
T Consensus 306 g~~~~~lV 313 (476)
T PRK09586 306 AGLFLIAV 313 (476)
T ss_pred HHHHHHHh
Confidence 77666543
No 31
>PF01313 Bac_export_3: Bacterial export proteins, family 3; InterPro: IPR002191 The fliL operon of Escherichia coli contains seven genes (including fliO, fliP, fliQ and fliR) involved in the biosynthesis and functioning of the flagellar organelle []. The fliO, fliP, fliQ and fliR genes encode highly hydrophobic polypeptides. The fliQ gene product, a small integral membrane protein that contains two putative transmembrane (TM) regions, is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Proteins sharing an evolutionary relationship with FliQ have been found in a range of bacteria: these include Yop translocation protein S from Yersinia pestis []; surface antigen-presentation protein SpaQ from Salmonella typhimurium and Shigella flexneri []; and probable translocation protein Y4YM from Rhizobium sp. (strain NGR234) []. All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways [].; GO: 0009306 protein secretion, 0016020 membrane
Probab=59.89 E-value=83 Score=24.65 Aligned_cols=71 Identities=11% Similarity=0.242 Sum_probs=47.1
Q ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 022850 56 SWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGE 133 (291)
Q Consensus 56 ~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E 133 (291)
.+.++.+...+.+.+|+.+...++.-+++.+.... .++-.-+.++-=++.++++-++...|.++.+.++.+
T Consensus 5 ~l~r~al~~~l~~~~P~L~~alvvGlvIsi~QA~T-------qIqEqTL~fvpKl~av~~~l~~~g~wm~~~l~~ft~ 75 (76)
T PF01313_consen 5 DLLRQALWLVLMLSAPVLLVALVVGLVISIFQAAT-------QIQEQTLSFVPKLLAVFLVLLLFGPWMLQQLVDFTR 75 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556788899999999988887766665443321 234445666665556666666777777777776654
No 32
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=59.16 E-value=63 Score=33.33 Aligned_cols=87 Identities=7% Similarity=0.038 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhHhhhhhhcc--chhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccc-chhH
Q 022850 69 LFPIAVTFYITWWFI-HFVDGFFSPIYAQLGI--DIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMP-FVRH 144 (291)
Q Consensus 69 LlPIaiTi~Il~wl~-~~vd~~~~pi~~~lg~--~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIP-lVk~ 144 (291)
++|.++..++..|+. ++.+..+...+..++- -+|-+.+++.+.+-+++|. .-.+++..+-+..+++.+.-| +-.-
T Consensus 135 V~~~Il~g~i~a~l~nk~~~k~lP~~l~~f~G~rfvPiit~lv~~~l~~i~~~-iwp~i~~~i~~~~~~l~~~~~~~g~~ 213 (502)
T TIGR02002 135 VFGGIIIGAIAAYCYNRFYNIKLPEYLGFFAGKRFVPIITGLAAIVTGIVLSF-IWPPVQDALNTFSHWAAYQNPVVAFF 213 (502)
T ss_pred cHHHHHHHHHHHHHHHHHhcccCcHHHHhcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 589999999999999 7777766555555421 2566666655555555553 344677777777777776665 6667
Q ss_pred HHHHHHHHHHHh
Q 022850 145 IYNASKQISAAI 156 (291)
Q Consensus 145 IYsaiKqi~~~~ 156 (291)
+|....++.=.+
T Consensus 214 i~G~l~r~Lv~~ 225 (502)
T TIGR02002 214 IFGFIERSLIPF 225 (502)
T ss_pred HHHHHHHHHHHh
Confidence 899999876554
No 33
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=57.07 E-value=14 Score=30.67 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=31.3
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
++|.+.+|....|..-|-++++|++-+..+ |++.|+
T Consensus 22 edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~ 58 (119)
T PRK10687 22 QDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEH 58 (119)
T ss_pred ECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHH
Confidence 467889999888988999999999998885 898886
No 34
>PRK15349 type III secretion system protein SsaT; Provisional
Probab=56.79 E-value=1.5e+02 Score=27.81 Aligned_cols=40 Identities=5% Similarity=0.009 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 51 SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 51 ~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
...+-++..+.|..|+.+-+|++++..++.-.++.+.+..
T Consensus 170 ~~~~~~~~~~~f~~al~lAaP~i~~lll~~~~lGll~R~~ 209 (259)
T PRK15349 170 LKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSA 209 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556778899999999999999999888887777764
No 35
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=55.98 E-value=49 Score=34.03 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-----HhhhhhhccchhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFF-----SPIYAQLGIDIFGLGFITS-VTFIFLIGVFMSSWLGASVLSLGEWFIKR 138 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~-----~pi~~~lg~~ipGlG~l~~-i~lIfliG~l~~~~lg~~l~~~~E~~l~r 138 (291)
-++|..++.|+..|+.+++..+. ..+.+. .-+|-++++++ .+.++++|=... |++..+.+++.++...
T Consensus 228 gflg~Il~g~~~gyv~k~lkki~~p~~~p~~~~~--~~~Pllt~li~~~l~~~viGP~~~-~i~~~l~~~l~~l~~~ 301 (482)
T PRK11404 228 GFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGS--MLIPFVTLLVFGVLTYYVIGPVMS-DLMGGLLHFLNTIPPS 301 (482)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCcchhhhcce--eeHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcc
Confidence 46899999999999999888865 222222 22566666554 444556775554 5666666666666543
No 36
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=54.43 E-value=87 Score=25.70 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=37.3
Q ss_pred HhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-ccchhhhHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHh
Q 022850 61 KFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQL-GIDIFGLGFITSVTFIFLI----GVFMSSWLGASVLSLGEWF 135 (291)
Q Consensus 61 ~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~l-g~~ipGlG~l~~i~lIfli----G~l~~~~lg~~l~~~~E~~ 135 (291)
=|+.-++-++=+++.+++.+|....+...+....... ..-...++++++.++++++ |...+....+...++.|++
T Consensus 20 G~~~~~~~l~~~i~a~~~a~~~~~~~~~~l~~~~~~~~~~~~~~iaf~~~f~~~~~i~~~i~~~l~~~~~~~~~~~~dr~ 99 (146)
T PF02674_consen 20 GFIRELFSLIGLIVALFVAFLFYPPLAPFLSNYFSSLSPPFANIIAFIILFVLVYIIVRIIGKLLRRIVKKPFLGWLDRL 99 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455556666666666777776666655554322000 0112234444443334443 3334443344445555655
Q ss_pred hccc
Q 022850 136 IKRM 139 (291)
Q Consensus 136 l~rI 139 (291)
+.-+
T Consensus 100 lG~~ 103 (146)
T PF02674_consen 100 LGAL 103 (146)
T ss_pred HHHH
Confidence 5443
No 37
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=53.43 E-value=1.6e+02 Score=30.53 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHhhhhhhcc--chhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchh-H
Q 022850 69 LFPIAVTFYITWWFIHFVDGF-FSPIYAQLGI--DIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVR-H 144 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~-~~pi~~~lg~--~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk-~ 144 (291)
++|.+++.++..|+.+...+. +...+..++- -+|-+.+++.+.+-+++ -.-+.++......+.+++...+.+. -
T Consensus 139 V~ggIi~g~i~a~i~n~~~k~~lP~~L~ff~G~rfVPiit~li~~~l~~~~--p~~wp~~~~~i~~~~~~i~~~g~~g~f 216 (517)
T TIGR02004 139 VLGAVIVGLIVYKLHNRFYTVQMPDALAFFGGARFVPIISALVLAVVGLVI--PLVWPLFALMIMAIGQLIQRSGIFGPF 216 (517)
T ss_pred hHHHHHHHHHHHHHHHHHccccCchHHHHccCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 689999999999999998885 3333333321 24544444433222222 3334455556666666676666544 4
Q ss_pred HHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeee
Q 022850 145 IYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVIT 185 (291)
Q Consensus 145 IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~ 185 (291)
+|..+.++.=.+ |..|-++.|++-|
T Consensus 217 iyG~l~rlLIp~----------------GLHh~l~~~f~~t 241 (517)
T TIGR02004 217 LFGSGERLLLPI----------------GLHHILVAMIRFT 241 (517)
T ss_pred HHHHHHHHHHHh----------------cccceEEeeEEEe
Confidence 899998876554 6777788888876
No 38
>COG3768 Predicted membrane protein [Function unknown]
Probab=52.03 E-value=73 Score=31.62 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHH--HHHHHHHHHHHHHHhhH
Q 022850 53 VVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFIT--SVTFIFLIGVFMSSWLG 125 (291)
Q Consensus 53 ~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~--~i~lIfliG~l~~~~lg 125 (291)
+=|+.+.|+++++..+|+-+++..|...|+-+.... .++-|+|... .++++..+|.+.+-|.+
T Consensus 58 rpr~s~~k~~~~a~~vLf~~Av~~q~~qwi~d~~qr----------~dWl~~~a~~v~~l~vlagv~~v~rEw~r 122 (350)
T COG3768 58 RPRSSFWKIMLGAGGVLFSLAVGLQSVQWIRDLFQR----------ADWLGLGAAAVGALIVLAGVGSVVREWRR 122 (350)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566899999999999999888887777653322 1223333333 34444556666666643
No 39
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=51.16 E-value=1.6e+02 Score=29.05 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHhhhhhHhHHHHHHHH
Q 022850 58 ASKKFMTGCVILFPIAVTF 76 (291)
Q Consensus 58 l~~~FltGLlvLlPIaiTi 76 (291)
++|.+++|.--++|+++.-
T Consensus 15 ~~~~lm~gis~miP~ivag 33 (346)
T TIGR01427 15 IYKHLLTGVSYMLPFVVAG 33 (346)
T ss_pred HHHHHHhchHHHHHHHHHH
Confidence 4578999999999998765
No 40
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=50.84 E-value=40 Score=35.57 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc--ccc
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLG----FITSVTFIFLIGVFMSSWLGASVLSLGEWFIKR--MPF 141 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG----~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~r--IPl 141 (291)
.++|+.++.|+..|+-++++..+...+..+= .|-+. +++..+.++++|-+. +|+|..+-.++.++... .|+
T Consensus 101 svip~il~~~~~~~vek~l~k~ip~~l~~~~--~P~~tlli~~i~~~l~~~viGP~g-~~i~~~l~~~i~~l~~~~~~~~ 177 (639)
T PRK15083 101 AMIAGPLGGWAIKHFDRWVDGKIKSGFEMLV--NNFSAGIIGMILAILAFLGIGPAV-EVLSKMLAAGVNFMVVHDLLPL 177 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccchhhHhh--hhHHHHHHHHHHHHHHheeeHHHH-HHHHHHHHHHHHHHHhCcchhH
Confidence 6899999999999999988887655544321 22222 223345556666443 45677777777777755 554
Q ss_pred hh-HHHHHHHHH
Q 022850 142 VR-HIYNASKQI 152 (291)
Q Consensus 142 Vk-~IYsaiKqi 152 (291)
+. -+..+.-++
T Consensus 178 ~a~~i~~~~~~~ 189 (639)
T PRK15083 178 TSIFVEPAKILF 189 (639)
T ss_pred HHHHHHHHHHHH
Confidence 43 334444443
No 41
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=50.80 E-value=39 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 022850 108 TSVTFIFLIGVFMSSWLGASVLSLGE 133 (291)
Q Consensus 108 ~~i~lIfliG~l~~~~lg~~l~~~~E 133 (291)
+..++++++|++..+++.+.+-+.++
T Consensus 19 v~AilIl~vG~~va~~v~~~~~~~l~ 44 (53)
T PF05552_consen 19 VGAILILIVGWWVAKFVRKLVRRLLE 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999888887766655554
No 42
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=50.67 E-value=84 Score=30.93 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--ccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcccc
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQL--GIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMP 140 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~l--g~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIP 140 (291)
-++|..++.|+..|+-++++..+.-.++.+ -.-+|-+.++++.+..+++|=.. ++++..+-+++.++.+.-|
T Consensus 112 gII~gilag~~~~~lek~ikK~lP~~l~g~~~i~iiP~lt~li~~~~~~vigppi-~~i~~~l~~~l~~l~~~~~ 185 (346)
T TIGR01427 112 GIIAGFLAGYVVKGLQKYIKKKLPQSLRGLKPILIIPLLGTLIVGALIYGINIPV-AYLNYGLSNWLNIMGSPNA 185 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHhCCceeehhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhH
Confidence 355666666666666666655442222210 02256666666556666777666 6888888888877765443
No 43
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=48.55 E-value=1.5e+02 Score=31.30 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHH
Q 022850 69 LFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSV-TFIFLIGVFMSSWLGASVLSLGEWFIKRMP-FVRHIY 146 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i-~lIfliG~l~~~~lg~~l~~~~E~~l~rIP-lVk~IY 146 (291)
++|..++.|+..++.+|++..+.+.+..+ -.|.+.+++++ +.++++|-+ -.+++..+..++.++...-| +..-||
T Consensus 211 vip~Il~~~l~~~iek~~~k~vP~~l~~~--f~Pli~~li~~~l~l~vigPi-g~~i~~~i~~~l~~l~~~~~~i~~~ii 287 (610)
T TIGR01995 211 VIPVILAVWLMSYVEKFLKKVIPGALKNF--LTPLLVMLITVPLTLLIIGPL-GNYAGEGISSGILFLYEVSPWLAGALL 287 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 36777777777777777777654443321 23444443332 223344533 34556666666666665554 334566
Q ss_pred HHHHHHH
Q 022850 147 NASKQIS 153 (291)
Q Consensus 147 saiKqi~ 153 (291)
.++-++.
T Consensus 288 g~l~~~L 294 (610)
T TIGR01995 288 AALWPVL 294 (610)
T ss_pred HHHHHHH
Confidence 6665543
No 44
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=45.58 E-value=2.5e+02 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHhhccccc
Q 022850 123 WLGASVLSLGEWFIKRMPF 141 (291)
Q Consensus 123 ~lg~~l~~~~E~~l~rIPl 141 (291)
+++..+.+..+++.+++|-
T Consensus 72 ~l~~~l~~q~~~l~~~lp~ 90 (341)
T TIGR02872 72 ILVTELVTETIALAKNLPQ 90 (341)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 4455566666667777774
No 45
>TIGR00851 mtlA PTS system, mannitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIC domain of the mannitol PTS transporters.
Probab=45.50 E-value=1.9e+02 Score=28.32 Aligned_cols=83 Identities=12% Similarity=-0.038 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc--ccc
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGF----ITSVTFIFLIGVFMSSWLGASVLSLGEWFIKR--MPF 141 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~----l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~r--IPl 141 (291)
-++|+.++.|+..|+=+++++.....++.+ -.|-+.+ ++..+.++++|=+ -+|+|..+-..++|+.+. .|.
T Consensus 93 sViP~il~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~li~~pl~l~viGPi-g~~ig~~i~~~i~~l~~~~~~~~ 169 (338)
T TIGR00851 93 AMIMGPLGGWLIKKTDEFVQGKVKQGFEML--VNNFSAGIIGFILTILAFEGIGPI-VKAISKILAAGVEAIVHAHLLPL 169 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCcHHHHHh--HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcchhH
Confidence 789999999999999999888764444432 1233332 2223444555533 345566666666666652 333
Q ss_pred -hhHHHHHHHHHH
Q 022850 142 -VRHIYNASKQIS 153 (291)
Q Consensus 142 -Vk~IYsaiKqi~ 153 (291)
-.-+..+.-++.
T Consensus 170 ~~g~i~g~~~~~l 182 (338)
T TIGR00851 170 ASIFVEPAKILFL 182 (338)
T ss_pred HHHHHHHHHHHHH
Confidence 334444444443
No 46
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=44.53 E-value=1.1e+02 Score=29.13 Aligned_cols=39 Identities=5% Similarity=0.114 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 022850 51 SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGF 89 (291)
Q Consensus 51 ~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~ 89 (291)
|+.+..++-|.++..+++.+-..+.++++.++++-++.+
T Consensus 2 M~il~rYi~r~~l~~~~~~l~~l~~l~~~~~~~~~l~~~ 40 (356)
T PRK15071 2 FGILDRYIGRTILSTIMLTLFMLVGLSGIIKFVDQLRKV 40 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577888888999999988888888888888888866654
No 47
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=43.95 E-value=2.5e+02 Score=25.46 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=26.5
Q ss_pred hccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 022850 97 LGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEW 134 (291)
Q Consensus 97 lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~ 134 (291)
+|++ |-+-+.+..+.|-.+|+++--.+|..++.+..+
T Consensus 72 ~GlD-P~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r 108 (173)
T PF08566_consen 72 MGLD-PFMVYGLATLACGALGWLVGPSLGNQVFRLLNR 108 (173)
T ss_pred cCcC-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhH
Confidence 4544 233344455678889999999999999988864
No 48
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=42.37 E-value=2.5e+02 Score=27.16 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhh-HHHHHHHHHHHHHHHHHHhhH
Q 022850 67 VILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGL-GFITSVTFIFLIGVFMSSWLG 125 (291)
Q Consensus 67 lvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGl-G~l~~i~lIfliG~l~~~~lg 125 (291)
-.++|.++.-+++++....++.+.......++...++. ..+.+..++.++|++...+-.
T Consensus 228 Ga~~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~l~~~~~~iG~~~~~l~s 287 (297)
T COG2177 228 GALIALALAALLLAGYRSSVNNVAPQFGQAFGLLGLGLDEVLLLLGILLLIGVLIAWLAS 287 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 46778777666555554455555433333344333333 344455667788877765543
No 49
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=42.02 E-value=1.3e+02 Score=30.04 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHh
Q 022850 109 SVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAI 156 (291)
Q Consensus 109 ~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKqi~~~~ 156 (291)
.+.++.-+|-+..||+-+++-...-.++.+||..-.|+==-.-+...+
T Consensus 109 IiGfliGIaRLS~NWLi~kl~~vYvEiFRNiPpLL~IfFWYf~Vl~~L 156 (397)
T COG4597 109 IIGFLIGIARLSDNWLIRKLSTVYVEIFRNIPPLLQIFFWYFGVLSVL 156 (397)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhC
Confidence 456666678889999999988888889999998887766555555555
No 50
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=41.07 E-value=47 Score=28.16 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=34.6
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHHh
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVV 264 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~vi 264 (291)
+++++.+|+=-.|..-|.++++|++.+..+ |++.++.-++..
T Consensus 20 e~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~ 62 (138)
T COG0537 20 EDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFL 62 (138)
T ss_pred eCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHH
Confidence 467788999888888999999999999885 999887665543
No 51
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=40.93 E-value=2.2e+02 Score=24.03 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHH
Q 022850 54 VRSWASKKFMTGCVILFPIAVTF 76 (291)
Q Consensus 54 lr~~l~~~FltGLlvLlPIaiTi 76 (291)
+++++-...+.=++.++|.++..
T Consensus 17 ~k~y~iGFvLsIiLT~ipF~~vm 39 (111)
T COG3125 17 LKSYLIGFVLSIILTLIPFWVVM 39 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665555566666777776644
No 52
>TIGR00852 pts-Glc PTS system, maltose and glucose-specific subfamily, IIC component. permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli. Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters.
Probab=40.90 E-value=2.2e+02 Score=26.85 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhccc-cchhHH
Q 022850 68 ILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGA-SVLSLGEWFIKRM-PFVRHI 145 (291)
Q Consensus 68 vLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~-~l~~~~E~~l~rI-PlVk~I 145 (291)
.++|+.+.+++.+++=++++..+-..++.+ -.|-+.+++...++++++.-+..+.+. .+-...+++.+.- ++---|
T Consensus 66 ~~~~ii~~~~~~~~~~k~~~~~lP~~l~~~--~~p~~~~li~~~~~~~v~~p~~~~~~~~~i~~~~~~i~~~~~~~g~~i 143 (289)
T TIGR00852 66 VVGPILVGAIALALHERFLDKKLPDVLGFF--LGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHWLYSAGGALGGAI 143 (289)
T ss_pred eeHHHHHHHHHHHHHHHHhhhhCchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcchHHHHHH
Confidence 478999998888888877777653333322 123344444444444444444444444 4444555555544 344458
Q ss_pred HHHHHHHHHHh
Q 022850 146 YNASKQISAAI 156 (291)
Q Consensus 146 YsaiKqi~~~~ 156 (291)
|...-|+.=.+
T Consensus 144 ~g~l~~lLv~~ 154 (289)
T TIGR00852 144 FGFLYRLLVPT 154 (289)
T ss_pred HHHHHHHHHHH
Confidence 88888866554
No 53
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=39.09 E-value=2.8e+02 Score=24.59 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHh
Q 022850 46 GRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSW 123 (291)
Q Consensus 46 ~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~ 123 (291)
=.+...+|+..-+ ++..-+|.++-+.++..++-.++.- .+++|-...+++-+++|.+|++.-+|
T Consensus 53 IP~~Vs~RM~rRm------~~~~GiP~~lG~~~f~~~y~l~~~~--------~~dvP~~~~~~~S~~~Fg~gllGisY 116 (153)
T PF11947_consen 53 IPEVVSNRMLRRM------AVFVGIPTALGVAVFVVFYYLKSRQ--------IVDVPPWAVLLVSLVFFGLGLLGISY 116 (153)
T ss_pred cCHHHHHHHHHHH------HHHhchHHHHHHHHHHHHHHHHhcc--------ccccCchHHHHHHHHHHHHHHHhhhh
Confidence 3456666666554 4455567766655554444333321 23444444444445677777766554
No 54
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=38.75 E-value=3.2e+02 Score=25.25 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHH-HHHHHh---------Hhhhhhhccc---hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 022850 66 CVILFPIAVTFYITWWFIH-FVDGFF---------SPIYAQLGID---IFGLGFITSVTFIFLIGVFMSSWLGASVLSLG 132 (291)
Q Consensus 66 LlvLlPIaiTi~Il~wl~~-~vd~~~---------~pi~~~lg~~---ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~ 132 (291)
++.++=+++..++++|++. ++.-++ .|+++++ .. -.+++.++++++++++=.+.-..+...+.+..
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~p~~~a~~la~~~~p~~~~l-~~~~~~r~la~~l~~~~~~~il~l~~~~~~~~i~~~~ 79 (327)
T PF01594_consen 1 ILIILILLLLLFLFLWFISPFLLPFVLALVLAYLLNPLVRFL-RRFGIPRSLAALLVLLLLLLILVLLFYLIIPQIIQQI 79 (327)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccccchhHHHHHHHHHHHHh
Q 022850 133 EWFIKRMPFVRHIYNASKQISAAI 156 (291)
Q Consensus 133 E~~l~rIPlVk~IYsaiKqi~~~~ 156 (291)
..+.+.+| .+.+.+++..+.+
T Consensus 80 ~~l~~~l~---~~~~~i~~~~~~~ 100 (327)
T PF01594_consen 80 QSLIENLP---QYLDKIKSWLNDL 100 (327)
T ss_pred HHHHHhhh---HHHHHhhhhhhcc
No 55
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=38.43 E-value=2e+02 Score=27.54 Aligned_cols=56 Identities=9% Similarity=0.276 Sum_probs=27.2
Q ss_pred HhHHHHHH----HHHHHHHHHHHHHHHhHhhhhhh----ccchhhhHHHHHHHHHHHHHHHHHH
Q 022850 67 VILFPIAV----TFYITWWFIHFVDGFFSPIYAQL----GIDIFGLGFITSVTFIFLIGVFMSS 122 (291)
Q Consensus 67 lvLlPIai----Ti~Il~wl~~~vd~~~~pi~~~l----g~~ipGlG~l~~i~lIfliG~l~~~ 122 (291)
.+++|+.+ -+-+.||+++..+..+.-+.+++ ++--.-++.+..+.+.++.|++.++
T Consensus 27 fvilpLl~ni~L~~gl~~~~~~~~~~wid~Lm~~iPdWl~wLs~v~~~la~L~lll~~~~lfs~ 90 (250)
T COG2981 27 FVILPLLLNILLWGGLFWLLFSQALPWIDTLMPGIPDWLGWLSYLLWILAVLLLLLVFAFLFST 90 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 44455666665555544333332 2211123444455555666666554
No 56
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=36.60 E-value=2.6e+02 Score=26.36 Aligned_cols=15 Identities=47% Similarity=1.322 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhHh
Q 022850 78 ITWWFIHFVDGFFSP 92 (291)
Q Consensus 78 Il~wl~~~vd~~~~p 92 (291)
++||++-.+..|++|
T Consensus 50 ~iw~v~llvS~F~s~ 64 (232)
T PF10329_consen 50 FIWWVLLLVSDFFSP 64 (232)
T ss_pred HHHHHHHHHHHHhCC
Confidence 478888888888754
No 57
>TIGR01400 fliR flagellar biosynthetic protein FliR. This model recognizes the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.
Probab=35.51 E-value=3.7e+02 Score=24.97 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 51 SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 51 ~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
...+-++....|..|+.+.+|+++...++.-.+.++.+..
T Consensus 159 ~~~~~~~~~~~f~~a~~lAaPvi~~~ll~~~~lGll~R~~ 198 (245)
T TIGR01400 159 FELILKALSDMFLLGLLLALPIIAALLLVNLVLGLVNRAA 198 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3455566678899999999999999999888888777765
No 58
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=35.27 E-value=3.1e+02 Score=24.00 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=26.9
Q ss_pred cccccceEEEEEc---CC---CCeeEEEEeccccc--ccccCCCcceEEEEe
Q 022850 188 NTQAFKEVAIIRH---PR---IGEYAFGFITSSVV--LQNYSGEEELCCVYV 231 (291)
Q Consensus 188 ~~~~fk~VVlV~~---P~---~g~~~iGFvT~~~~--~~~~~~~e~~v~VfV 231 (291)
....+++|.+|+| +. +=+++++++-++.. .-+...+.+-+.+|.
T Consensus 76 ~~~~~~kvgvvRYnAF~dmGg~LSFslAlLD~~~nGvVltsI~~Re~s~~Ya 127 (151)
T PF14584_consen 76 LRNCVQKVGVVRYNAFEDMGGDLSFSLALLDDNNNGVVLTSIHSREESRTYA 127 (151)
T ss_pred HHhccceEEEEEccCcccccccceeeeEEEeCCCCEEEEEeeecCCCcEEEE
Confidence 4568899999999 22 33788888887641 112223444455554
No 59
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=34.52 E-value=3.4e+02 Score=24.27 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=36.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHH
Q 022850 62 FMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIG 117 (291)
Q Consensus 62 FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG 117 (291)
.+.|+.+-+-+.+.+-++-+...+++..+.|+...+ ..+|-++++-.+++.|-.|
T Consensus 26 ~~~g~~ia~~ig~~lG~~~~~~~~~~~~~~p~~~~l-~~iP~~~~~pl~~~~fG~g 80 (202)
T TIGR01183 26 VAVGFSIAAIIGIAVGILIGLSKFLNAALDPIFQVL-RTIPPLAWLPIALAAFQDA 80 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcC
Confidence 455666655566655556666788999999987765 4567777666655555444
No 60
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=34.18 E-value=3.4e+02 Score=25.97 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=19.4
Q ss_pred hhhhHHHHH--------HHHHHHHHHHHHHhhHHHH
Q 022850 101 IFGLGFITS--------VTFIFLIGVFMSSWLGASV 128 (291)
Q Consensus 101 ipGlG~l~~--------i~lIfliG~l~~~~lg~~l 128 (291)
.|.+||.++ ...-|++|++...+++-..
T Consensus 188 LPAvGfAmLl~~m~~k~~~~ff~lGF~laayl~l~~ 223 (265)
T TIGR00822 188 IVVVGYAMVLRMMFKAYLMPFFYLGFLFAAYTDFSL 223 (265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhCCcH
Confidence 577777664 3556789999988875433
No 61
>PF07670 Gate: Nucleoside recognition; InterPro: IPR011642 This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins (e.g. O00337 from SWISSPROT) []. In the FeoB proteins (e.g. O25396 from SWISSPROT), which are believed to be Fe2+ transporters, it includes the membrane pore region, so the function of this region is likely to be more general than just nucleoside specificity []. This family may represent the pore and gate, with a wide potential range of specificity. Hence its name - Gate.; GO: 0001882 nucleoside binding; PDB: 3TIJ_A.
Probab=33.79 E-value=1.2e+02 Score=23.57 Aligned_cols=33 Identities=24% Similarity=0.710 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHHHHHHHH------HHHHHhHhhhhhhcc
Q 022850 67 VILFPIAVTFYITWWFIH------FVDGFFSPIYAQLGI 99 (291)
Q Consensus 67 lvLlPIaiTi~Il~wl~~------~vd~~~~pi~~~lg~ 99 (291)
.-++|+++.+.++.|+.. .+..++.|+.+.+|.
T Consensus 2 ~~~~p~i~~~~~l~~iL~~~g~l~~i~~~l~P~~~~lgL 40 (109)
T PF07670_consen 2 LRALPIIIPFSILIWILEESGLLERISRLLEPLFRPLGL 40 (109)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--
T ss_pred eeeHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 346777777777777765 556678888877764
No 62
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=33.74 E-value=2.8e+02 Score=23.15 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=31.1
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHH-HHHHHHHHHHHHHHHH
Q 022850 62 FMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGF-ITSVTFIFLIGVFMSS 122 (291)
Q Consensus 62 FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~-l~~i~lIfliG~l~~~ 122 (291)
.++|.=+++=..+.+.+--+-++++.-...|.+...=.++|..-+ .+++...+++|++++.
T Consensus 44 ~l~~~~Fi~Rt~~FIlicAFGYGll~v~~tP~l~~~L~~~~~~~l~~~vl~~F~~iG~lAqR 105 (106)
T PF11872_consen 44 LLSGYHFILRTLAFILICAFGYGLLIVWLTPLLARQLAQLPNYWLAPVVLLSFILIGVLAQR 105 (106)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555666666666667766431111222112 2223344568887763
No 63
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=33.49 E-value=4.1e+02 Score=27.71 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHhhhhhhc-c-chhhhHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHhhccccchh
Q 022850 69 LFPIAVTFYITWWFIHFVDGF-FSPIYAQLG-I-DIFGLGFITSVTFIFLIGVFM--SSWLGASVLSLGEWFIKRMPFVR 143 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~-~~pi~~~lg-~-~ipGlG~l~~i~lIfliG~l~--~~~lg~~l~~~~E~~l~rIPlVk 143 (291)
++|.+++.++..|+.+...+. +...+..++ . -+|-+.+++.+ .+++++ -.-++..+.+.+.+++...+.+.
T Consensus 148 V~ggIi~g~i~a~l~~k~~k~~lP~~l~~f~G~rfvPiit~lv~~----~l~~i~~~iwP~~~~~~~~~~~~~~~~g~ig 223 (530)
T PRK10110 148 ILGAVIAGIIVWMLHERFHNIRLPDALAFFGGTRFVPIISSLVMG----LVGLVIPLVWPIFAMGISGLGHMINSAGDFG 223 (530)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCcHHHHhcCCCccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 588889999999999987774 333333331 1 24444443332 222222 22334444455666676666544
Q ss_pred H-HHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeee
Q 022850 144 H-IYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVIT 185 (291)
Q Consensus 144 ~-IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~ 185 (291)
. +|..+.++.=.+ |..|-++.|++-|
T Consensus 224 ~~i~G~l~r~LVp~----------------GLHh~l~~~f~~t 250 (530)
T PRK10110 224 PMLFGTGERLLLPF----------------GLHHILVALIRFT 250 (530)
T ss_pred HHHHHHHHHHHHHh----------------ccchhhccceEEe
Confidence 4 899998875544 5556666666665
No 64
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=32.99 E-value=96 Score=21.63 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHH
Q 022850 54 VRSWASKKFMTGCVILFPIAVTFYI 78 (291)
Q Consensus 54 lr~~l~~~FltGLlvLlPIaiTi~I 78 (291)
|.+|+..-+..|+++++|+++.+..
T Consensus 5 L~nfl~Sl~aG~~iVv~~i~~ali~ 29 (39)
T PF06596_consen 5 LSNFLLSLVAGAVIVVIPIAGALIF 29 (39)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhheEE
Confidence 4556655567777999999876543
No 65
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.52 E-value=76 Score=29.25 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 022850 47 RETFSKVVRSW 57 (291)
Q Consensus 47 ~~~~~~~lr~~ 57 (291)
+++|..-+..+
T Consensus 219 ~~al~~~~~~~ 229 (262)
T PF14257_consen 219 RDALKNGWNAL 229 (262)
T ss_pred HHHHHHHHHHH
Confidence 44554444433
No 66
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=32.38 E-value=2.5e+02 Score=28.06 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=22.5
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHh
Q 022850 129 LSLGEWFIKRMPFVRHIYNASKQISAAI 156 (291)
Q Consensus 129 ~~~~E~~l~rIPlVk~IYsaiKqi~~~~ 156 (291)
.+++|..+.|+|.-.-+|+++-=++..+
T Consensus 66 ~~~le~~i~k~~~~~ilf~tiGLiiGLl 93 (356)
T COG4956 66 LKRLEEQIRKLPVTTILFGTIGLIIGLL 93 (356)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 5677888999999888888887766655
No 67
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=31.67 E-value=2.6e+02 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHhhc--cccchhHH
Q 022850 103 GLGFITSVTFIFLIGVFMSSWLGA-SVLSLGEWFIK--RMPFVRHI 145 (291)
Q Consensus 103 GlG~l~~i~lIfliG~l~~~~lg~-~l~~~~E~~l~--rIPlVk~I 145 (291)
|.||+-.++.=|++||++. |+.+ ++-++.+.+.. =+|++.++
T Consensus 100 ~~GFlGaii~G~laGy~v~-~lkki~lpk~l~~~~piliiP~l~~l 144 (359)
T PRK10478 100 GAGFFGALIAGIIGGIVVH-YLKKIPVHKVLRSVMPIFIIPIVGTL 144 (359)
T ss_pred CcchHHHHHHHHHHHHHHH-HHHhcCCchhhHhhcceeeeHHHHHH
Confidence 4577888888899999998 6655 45555655543 36666654
No 68
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=31.53 E-value=4.3e+02 Score=27.89 Aligned_cols=100 Identities=10% Similarity=0.215 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hHhhhhhhc-c-chhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh---cccc-
Q 022850 69 LFPIAVTFYITWWFIHFVDGF--FSPIYAQLG-I-DIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEWFI---KRMP- 140 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~--~~pi~~~lg-~-~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l---~rIP- 140 (291)
++|.+++.++..|+.+...+. +...+..++ . -+|-+.+++.+.+-++.+++-= +++..+-+..+++. ..-|
T Consensus 142 VfggIi~g~i~a~l~n~~~~~k~lP~~L~ff~G~RfVPilt~lv~i~l~~i~~~iwP-~i~~gI~~~~~~i~~~g~~~~~ 220 (548)
T TIGR02003 142 VFVGIIAGFLGATAYNKYYNYDKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWP-FIQSGINEFGMWIAASKDSAPI 220 (548)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCcHHHHHccCCcchHhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCccch
Confidence 589999999999999988443 333334332 1 2455555544433333333322 67777777778877 3445
Q ss_pred chhHHHHHHHHHHHHhcCCcccccccccccccccceeeeeeeeee
Q 022850 141 FVRHIYNASKQISAAISPGMYSVFNLPYYISVGRQFIFCITFVIT 185 (291)
Q Consensus 141 lVk~IYsaiKqi~~~~~~~~~~~~~~~~~~~~g~~~kf~~~~~v~ 185 (291)
+-.-+|..+.++.=.+ |.-|-++.|++-|
T Consensus 221 ~g~fiyG~l~rlLIp~----------------GLHh~l~~p~~~t 249 (548)
T TIGR02003 221 LAPFLYGTLERLLLPF----------------GLHHMLTIPMNYT 249 (548)
T ss_pred HHHHHHHHHHHHHHHh----------------ccchhhhcceeee
Confidence 6667899998876554 5556666676665
No 69
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=31.31 E-value=1.4e+02 Score=33.06 Aligned_cols=82 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhHhhh-----------hhhccchhh--hHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022850 65 GCVILFPIAVTFYITWWFIHFVDGFFSPIY-----------AQLGIDIFG--LGFITSVTFIFLIGVFMSSWLGASVLSL 131 (291)
Q Consensus 65 GLlvLlPIaiTi~Il~wl~~~vd~~~~pi~-----------~~lg~~ipG--lG~l~~i~lIfliG~l~~~~lg~~l~~~ 131 (291)
+..+++=+++.+.++.|.|+ ++..|++ ..++..+.| +++...+.++.++|..++|.+ -+++.
T Consensus 865 ~~~~~~al~liyliL~~~F~---S~~~PliIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNaI--llvd~ 939 (1021)
T PF00873_consen 865 GFALILALLLIYLILAAQFE---SFRQPLIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNAI--LLVDF 939 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---SSSTHHHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhc---ceeeeEEEEeccchhhHHHHHHHhhccccccccceehHHHHHHHHHhhhH--HHHHH
Q ss_pred HHHhhc--cccchhHHHHHHHH
Q 022850 132 GEWFIK--RMPFVRHIYNASKQ 151 (291)
Q Consensus 132 ~E~~l~--rIPlVk~IYsaiKq 151 (291)
+++..+ .+|....|..+.++
T Consensus 940 ~~~~~~~~g~~~~eAi~~a~~~ 961 (1021)
T PF00873_consen 940 INELRKREGMPLEEAIIEAARS 961 (1021)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhhhccccHHHHHHHHHHH
No 70
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=31.18 E-value=1.1e+02 Score=21.64 Aligned_cols=18 Identities=33% Similarity=0.955 Sum_probs=8.6
Q ss_pred hhHhHHHHHHHHHHHHHH
Q 022850 65 GCVILFPIAVTFYITWWF 82 (291)
Q Consensus 65 GLlvLlPIaiTi~Il~wl 82 (291)
|+-+++|+++-.++=+|+
T Consensus 7 g~~~~~~i~~g~~~G~~l 24 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWL 24 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555444443333
No 71
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=30.89 E-value=1.5e+02 Score=21.67 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHH
Q 022850 53 VVRSWASKKFMTGCVILFPIAVTFYITWWFIHF 85 (291)
Q Consensus 53 ~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~ 85 (291)
+||+++ -|-=|+++.+=|+...|.+|++++-
T Consensus 4 vLRs~L--~~~F~~lIC~Fl~~~~~F~~F~~Kq 34 (54)
T PF06716_consen 4 VLRSYL--LLAFGFLICLFLFCLVVFIWFVYKQ 34 (54)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577775 3444788888888888888877763
No 72
>PRK10845 colicin V production protein; Provisional
Probab=30.71 E-value=3.4e+02 Score=23.58 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHH
Q 022850 112 FIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQ 151 (291)
Q Consensus 112 lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKq 151 (291)
++-+++.+.+..+....+++.|+++. -+.+.+|-
T Consensus 76 ~~~i~~~~l~~l~~~~~Lg~~dr~lG------~ifG~~rg 109 (162)
T PRK10845 76 VGAIVNYVIGQLVEKTGLSGTDRVLG------VCFGALRG 109 (162)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHH------HHHHHHHH
Confidence 33444555555555555566666553 34455554
No 73
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=30.52 E-value=4.3e+02 Score=25.24 Aligned_cols=27 Identities=15% Similarity=0.424 Sum_probs=19.2
Q ss_pred hhhhHHHHH--------HHHHHHHHHHHHHhhHHH
Q 022850 101 IFGLGFITS--------VTFIFLIGVFMSSWLGAS 127 (291)
Q Consensus 101 ipGlG~l~~--------i~lIfliG~l~~~~lg~~ 127 (291)
.|.+||.++ ....|++|++...|++-.
T Consensus 189 LPAvGfAmLl~~i~~k~~~~ff~lGFvl~ayl~l~ 223 (262)
T PRK15065 189 IVVVGYAMVINMMATRELMPFFYLGFVLAAFTNLN 223 (262)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCCc
Confidence 577777664 356788999999887533
No 74
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.97 E-value=1.2e+02 Score=23.75 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHh
Q 022850 104 LGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAAI 156 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKqi~~~~ 156 (291)
+++ +.+++++++|++.-.|+.++ .+++.+++=|=++ =.++|-+....
T Consensus 5 lai-l~ivl~ll~G~~~G~fiark---~~~k~lk~NPpin--e~~iR~M~~qm 51 (71)
T COG3763 5 LAI-LLIVLALLAGLIGGFFIARK---QMKKQLKDNPPIN--EEMIRMMMAQM 51 (71)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHhhCCCCC--HHHHHHHHHHh
Confidence 444 55667788888877777665 4566676666544 24444444443
No 75
>PRK12780 fliR flagellar biosynthesis protein FliR; Reviewed
Probab=29.66 E-value=4.7e+02 Score=24.42 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 51 SKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 51 ~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
.+.+-++....|..|+.+-+|++++..+..-.++.+.+..
T Consensus 169 ~~~~~~~~~~~f~~al~lAaP~i~~lll~~l~lGll~R~~ 208 (251)
T PRK12780 169 LVQLVDQLSEAFTLALRIASPFIIYSVIVNLAVGLVNKLT 208 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556667788999999999999999999888888777765
No 76
>TIGR01401 fliR_like_III type III secretion protein SpaR/YscT/HrcT. This model represents members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (TIGRFAMs:TIGR01400).
Probab=29.16 E-value=4.8e+02 Score=24.38 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 50 FSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 50 ~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
....+-++..+.|..|+.+-+|+++...++.-.++++.+..
T Consensus 165 ~~~~~~~~~~~~f~~al~lAaPvi~~~ll~~l~lGllsR~~ 205 (253)
T TIGR01401 165 GLSFVLSQLDQMMALALLLAAPVIIVLFLIELALGLLSRFA 205 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667788999999999999999999888887776664
No 77
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=28.54 E-value=4.9e+02 Score=24.99 Aligned_cols=27 Identities=15% Similarity=-0.023 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 022850 107 ITSVTFIFLIGVFMSSWLGASVLSLGE 133 (291)
Q Consensus 107 l~~i~lIfliG~l~~~~lg~~l~~~~E 133 (291)
++++++-.++|++.+.+.-++.++.+|
T Consensus 281 ~~l~~~g~~lg~lgs~~s~~r~Lr~~~ 307 (309)
T TIGR00439 281 GLLLGFCIALGVVGAWLATTQHLLCFK 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455577888888877777666553
No 78
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.24 E-value=5.9e+02 Score=25.12 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=37.9
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHhhhhhHhHHHHHHHH--HHHHHHHHHHHHHhHhhhhhhccchhhhH
Q 022850 37 SSSSSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTF--YITWWFIHFVDGFFSPIYAQLGIDIFGLG 105 (291)
Q Consensus 37 ~~~~~~~~~~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi--~Il~wl~~~vd~~~~pi~~~lg~~ipGlG 105 (291)
+.+.....+.+|+..+- +++ |.|.+=.-.++|..+.+ ..=.-+++++..+++|+.+.++.+-..+-
T Consensus 156 ~~~~~~~~~~k~a~~~~-kt~--k~~~rv~~~~~~~~~li~~L~~~G~~d~~~~~~~pl~~~L~lp~eav~ 223 (311)
T COG3366 156 SNSELSIPANKEAVKEA-KTF--KVFKRVIPVVVPATVLIFFLIELGLFDYVEEFLHPLTNYLPLPPEAVT 223 (311)
T ss_pred ccCCCCcchHHHHHhhh-hhH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHhhhcCCCcchHH
Confidence 34444456667776665 211 23433344444544333 33356788999999999988876544433
No 79
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=28.03 E-value=1.7e+02 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=17.1
Q ss_pred HHHHHHHHHH-hhhhhHhHHHHHHHHHHHHHH
Q 022850 52 KVVRSWASKK-FMTGCVILFPIAVTFYITWWF 82 (291)
Q Consensus 52 ~~lr~~l~~~-FltGLlvLlPIaiTi~Il~wl 82 (291)
+..|.|+-.. .+.+ +++|+++.+.++.++
T Consensus 65 r~vRD~VDsR~~i~e--~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 65 RYVRDYVDSRRNIGE--FFMPVALVLLVLSFV 94 (170)
T ss_pred hhhhhhhhcccchHH--HHHHHHHHHHHHHHH
Confidence 3455554332 3333 357888888887766
No 80
>PRK10494 hypothetical protein; Provisional
Probab=27.67 E-value=4.3e+02 Score=24.69 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=32.8
Q ss_pred HHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 022850 59 SKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSWLGASVLSLGEW 134 (291)
Q Consensus 59 ~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~lg~~l~~~~E~ 134 (291)
-+++++.++.=+|+.+.+.++.|++-+... ....|..+.++.+.++-++...+++.+++..+|.
T Consensus 5 l~K~i~~ll~P~~~~llll~l~~ll~~~~r------------~~r~~~~l~~~~~~~l~l~s~~~~~~~Ll~~LE~ 68 (259)
T PRK10494 5 LKKVIGGLLLPLPLLLLIIGAGLALLWFSR------------FQKTGKIFISIGWLALLLLSLQPVADRLLRPIES 68 (259)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 456777766666666666555543321100 0111222222223334445567778888888885
No 81
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=27.60 E-value=5.7e+02 Score=24.70 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=45.6
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-c--cchhhhHHHHHHHHHHHHHHH
Q 022850 43 HHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQL-G--IDIFGLGFITSVTFIFLIGVF 119 (291)
Q Consensus 43 ~~~~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~l-g--~~ipGlG~l~~i~lIfliG~l 119 (291)
..-||+-+++.+..-. -+.-+.+++.+-.++.--++.-+.+...|+-+.+++++ + ..+| .+++.+++..+.|--
T Consensus 81 DDlGRDvlSRli~Gt~-~t~G~allvt~~a~l~g~~lGi~AG~t~gl~s~~lnHilDt~lSiP--sLLlAiivvaf~gps 157 (296)
T COG4171 81 DDLGRDVLSRLISGTA-PTVGGALLVTLAATICGGVLGIFAGATHGLRSAVLNHILDTLLSIP--SLLLAIIVVAFAGPS 157 (296)
T ss_pred ccchHHHHHHHHccCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHcCch
Confidence 3567887777776431 11112233333333333344444445555555555442 1 1233 223333333444433
Q ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHH
Q 022850 120 MSSWLGASVLSLGEWFIKRMP-FVRHIYNASKQI 152 (291)
Q Consensus 120 ~~~~lg~~l~~~~E~~l~rIP-lVk~IYsaiKqi 152 (291)
..|..-+..+ .-+| ++++||+++++=
T Consensus 158 l~namfA~~L-------AllPrfirsiY~avh~E 184 (296)
T COG4171 158 LSNAMFAVWL-------ALLPRFIRSIYSAVHDE 184 (296)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3333322222 3334 478999999763
No 82
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.40 E-value=1.4e+02 Score=25.42 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 022850 103 GLGFITSVTFIFLIGVFMSSW 123 (291)
Q Consensus 103 GlG~l~~i~lIfliG~l~~~~ 123 (291)
.+.++.+.++-|.+|++..+.
T Consensus 47 ~L~~l~S~~VYfwIGmlStka 67 (114)
T PF11023_consen 47 LLAILASTAVYFWIGMLSTKA 67 (114)
T ss_pred HHHHHHHHHHHHHhhhhcccc
Confidence 455566667777888876543
No 83
>PRK01844 hypothetical protein; Provisional
Probab=26.55 E-value=1.4e+02 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Q 022850 110 VTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQISAA 155 (291)
Q Consensus 110 i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKqi~~~ 155 (291)
+++.+++|++.--++.++ ++|+.|++=|=+. =..+|.+...
T Consensus 10 ~I~~li~G~~~Gff~ark---~~~k~lk~NPpin--e~mir~Mm~Q 50 (72)
T PRK01844 10 GVVALVAGVALGFFIARK---YMMNYLQKNPPIN--EQMLKMMMMQ 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCC--HHHHHHHHHH
Confidence 345677777776666665 6788888886654 2344444333
No 84
>COG3162 Predicted membrane protein [Function unknown]
Probab=26.46 E-value=2.6e+02 Score=23.29 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhh
Q 022850 69 LFPIAVTFYITWWFIHFVDGFFSPIY 94 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~~~pi~ 94 (291)
..|+.++++++|+.+-.+.++..+..
T Consensus 26 a~~ltl~flv~Y~~filLiaf~~~~l 51 (102)
T COG3162 26 AVPLTLIFLVVYFGFILLIAFAPGWL 51 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 46888999999999888888776543
No 85
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=26.09 E-value=3.5e+02 Score=28.47 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=21.4
Q ss_pred HhHHHHHHHH-HHHHHHHHHHHHHhHhh
Q 022850 67 VILFPIAVTF-YITWWFIHFVDGFFSPI 93 (291)
Q Consensus 67 lvLlPIaiTi-~Il~wl~~~vd~~~~pi 93 (291)
+..+|++++- +++||+|..+.+.+.-+
T Consensus 342 f~~ip~ai~d~~f~~wIF~SL~~Tlk~L 369 (518)
T KOG2568|consen 342 FAALPLAILDAAFIYWIFISLAKTLKKL 369 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999875 56789999998887544
No 86
>PRK14762 membrane protein; Provisional
Probab=26.05 E-value=1.1e+02 Score=19.64 Aligned_cols=15 Identities=40% Similarity=0.704 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHh
Q 022850 109 SVTFIFLIGVFMSSW 123 (291)
Q Consensus 109 ~i~lIfliG~l~~~~ 123 (291)
.+.+||++|++.-+-
T Consensus 7 ~i~iifligllvvtg 21 (27)
T PRK14762 7 AVLIIFLIGLLVVTG 21 (27)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455678888877654
No 87
>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed
Probab=25.65 E-value=5.4e+02 Score=23.80 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 52 KVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 52 ~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
+.+-++....|..|+.+.+|+.+...++.-.+.++.+..
T Consensus 162 ~~~~~~~~~~f~~a~~lAaP~i~~~ll~~~~lGll~R~~ 200 (242)
T PRK05701 162 LLLAKALSAMFLIGLQLALPIIVLLLLVNLALGLINRTA 200 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445566778899999999999999999888888777765
No 88
>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only]
Probab=25.01 E-value=5e+02 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.350 Sum_probs=10.5
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHH
Q 022850 62 FMTGCVILFPIAVTFYITWWFIH 84 (291)
Q Consensus 62 FltGLlvLlPIaiTi~Il~wl~~ 84 (291)
|+..++-++=.++.+|+-+.++.
T Consensus 24 fi~e~~sl~s~i~a~~vA~~fy~ 46 (182)
T COG1286 24 FIREVLSLLSWILAAFVASLFYK 46 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444444444444444444
No 89
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=24.82 E-value=6.1e+02 Score=24.17 Aligned_cols=25 Identities=12% Similarity=0.269 Sum_probs=18.5
Q ss_pred hhhhHHHHH--------HHHHHHHHHHHHHhhH
Q 022850 101 IFGLGFITS--------VTFIFLIGVFMSSWLG 125 (291)
Q Consensus 101 ipGlG~l~~--------i~lIfliG~l~~~~lg 125 (291)
.|.+||.++ ...-|++|+++..+++
T Consensus 189 LPAvGfAmLl~~m~~k~~~~ff~lGF~l~ayl~ 221 (267)
T PRK09757 189 LPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQ 221 (267)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhC
Confidence 566777654 3566789999998876
No 90
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=23.97 E-value=5.4e+02 Score=23.90 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=36.2
Q ss_pred hhhhhHhHHH-HHHHHHHHHHHHHHHHHHhHhhh-hh---hccchhhhHHHHH--------HHHHHHHHHHHHHhhHHH
Q 022850 62 FMTGCVILFP-IAVTFYITWWFIHFVDGFFSPIY-AQ---LGIDIFGLGFITS--------VTFIFLIGVFMSSWLGAS 127 (291)
Q Consensus 62 FltGLlvLlP-IaiTi~Il~wl~~~vd~~~~pi~-~~---lg~~ipGlG~l~~--------i~lIfliG~l~~~~lg~~ 127 (291)
++..+...+| ..+.+|.-...+..+-+.+.+.. +- .+--.|.+|+..+ ..-.|++|+++..+++=.
T Consensus 145 ~~~~~~~~v~~~fl~~~~G~~~v~~~~~~iP~~v~~gl~vagg~LPAvGfAmll~~~~~k~~~~ff~~GF~l~~yl~l~ 223 (238)
T PF03609_consen 145 ILFFLIYFVPPVFLAVYFGSDAVQALLNAIPEWVLNGLNVAGGMLPAVGFAMLLKMMWKKKYIPFFFLGFVLAAYLGLS 223 (238)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHCCc
Confidence 5566666666 55555555555544434332221 11 1222566666553 355678899988887543
No 91
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=23.65 E-value=1.3e+02 Score=20.63 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhh
Q 022850 70 FPIAVTFYITWWFIHFVDGFFSPI 93 (291)
Q Consensus 70 lPIaiTi~Il~wl~~~vd~~~~pi 93 (291)
+|+++|+|++.-+=+-+|.+...+
T Consensus 8 FPi~va~yLL~R~E~kld~L~~~i 31 (38)
T PF12841_consen 8 FPIAVAIYLLVRIEKKLDELTESI 31 (38)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999988877777775443
No 92
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=23.65 E-value=3.5e+02 Score=21.55 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc-cccchhHH
Q 022850 104 LGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIK-RMPFVRHI 145 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~-rIPlVk~I 145 (291)
++|++++++++++|.++-. --+.+-+..+.+.. .+|-+..+
T Consensus 10 ~~f~~~~~l~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~ 51 (181)
T PF12729_consen 10 LGFGLIILLLLIVGIVGLY-SLSQINQNVEEIYENNLPSIELL 51 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455555555555544333 23444455555543 35554443
No 93
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=22.68 E-value=1.2e+02 Score=29.76 Aligned_cols=66 Identities=20% Similarity=0.204 Sum_probs=49.3
Q ss_pred EEEcCCCCeeEEEEeccccc---------------------ccc-------cCCCcceEEEEecCCCCCceeEEEEeCCC
Q 022850 197 IIRHPRIGEYAFGFITSSVV---------------------LQN-------YSGEEELCCVYVPTNHLYIGDIFLINTKD 248 (291)
Q Consensus 197 lV~~P~~g~~~iGFvT~~~~---------------------~~~-------~~~~e~~v~VfVPtsp~~sG~l~lV~~~d 248 (291)
-..||+.-.|++.|+..+.. ++. ...+++.+.+|+|-+|.+-|-+.++|+..
T Consensus 161 Sl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH 240 (346)
T PRK11720 161 SNPHPHGQIWANSFLPNEAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAH 240 (346)
T ss_pred CCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccC
Confidence 34589888999999987631 000 12236788999999998889999999999
Q ss_pred eecC-CCCHHHHHHH
Q 022850 249 VIRP-NLSVREGIEI 262 (291)
Q Consensus 249 V~~l-DmSveeAmk~ 262 (291)
+..+ |++-++...+
T Consensus 241 ~~~~~dl~dee~~~L 255 (346)
T PRK11720 241 VLRLTDLTDAQRDDL 255 (346)
T ss_pred CCChhhCCHHHHHHH
Confidence 9775 8988865543
No 94
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=22.35 E-value=3.3e+02 Score=20.20 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022850 69 LFPIAVTFYITWWFIHFVDGF 89 (291)
Q Consensus 69 LlPIaiTi~Il~wl~~~vd~~ 89 (291)
|--+..-+|.++|++..-+.+
T Consensus 9 LsiiT~GIY~l~W~y~~~~~~ 29 (75)
T PF14018_consen 9 LSIITCGIYGLYWLYKIWKEL 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456789999999877774
No 95
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=22.29 E-value=1.2e+02 Score=20.91 Aligned_cols=21 Identities=24% Similarity=0.638 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 022850 104 LGFITSVTFIFLIGVFMSSWL 124 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~l 124 (291)
.|+++.++-|.+.|+++..|+
T Consensus 7 ~GiVLGlipiTl~GlfvaAyl 27 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWN 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 477888888999999998875
No 96
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=22.20 E-value=3.8e+02 Score=25.06 Aligned_cols=30 Identities=13% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 022850 60 KKFMTGCVILFPIAVTFYITWWFIHFVDGF 89 (291)
Q Consensus 60 ~~FltGLlvLlPIaiTi~Il~wl~~~vd~~ 89 (291)
+.|+.=.++.+-....++++..+++.++.+
T Consensus 5 ~~~l~~f~~~l~~~~~i~~~~~l~~~l~~~ 34 (354)
T PF03739_consen 5 KEFLKTFLLVLLSFTGIFLIIDLFELLDDF 34 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666555
No 97
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=22.18 E-value=1.6e+02 Score=28.99 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHH--HHHHHhHhhhhhhccchhhhHH-HHHHHHHHHHHHHHHHhhHH
Q 022850 67 VILFPIAVTFYITWWFIH--FVDGFFSPIYAQLGIDIFGLGF-ITSVTFIFLIGVFMSSWLGA 126 (291)
Q Consensus 67 lvLlPIaiTi~Il~wl~~--~vd~~~~pi~~~lg~~ipGlG~-l~~i~lIfliG~l~~~~lg~ 126 (291)
+.++|+...+.++-=.+- -..|.|.|++-.+-+.-.++.. ++..+++..+|++.+.|+-+
T Consensus 123 llliPiGaLvVV~lRniiGi~T~GTFmPVLIAlAF~eT~L~~Gli~FllIV~~GL~iR~yLs~ 185 (313)
T PF14402_consen 123 LLLIPIGALVVVFLRNIIGIKTSGTFMPVLIALAFRETQLLWGLILFLLIVAIGLLIRSYLSH 185 (313)
T ss_pred HHHHhhhhHhhHHhhHeeCcccccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899887766533222 2345778886433222222211 12334567789999988754
No 98
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.16 E-value=85 Score=26.25 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=6.4
Q ss_pred HHHHHHHHhcC
Q 022850 148 ASKQISAAISP 158 (291)
Q Consensus 148 aiKqi~~~~~~ 158 (291)
.-+++.+.+.+
T Consensus 31 ~~~~m~~~Lk~ 41 (109)
T PRK05886 31 ATIDLHESLQP 41 (109)
T ss_pred HHHHHHHhcCC
Confidence 34566666654
No 99
>PRK05415 hypothetical protein; Provisional
Probab=21.61 E-value=6.4e+02 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=14.3
Q ss_pred HHHhhhhhHhHHHHHHHHHHHHHHH
Q 022850 59 SKKFMTGCVILFPIAVTFYITWWFI 83 (291)
Q Consensus 59 ~~~FltGLlvLlPIaiTi~Il~wl~ 83 (291)
++-|.+++..++=+++..+ ..|+.
T Consensus 67 ~~~~~~~l~~l~~~~~~~~-~~~i~ 90 (341)
T PRK05415 67 RKLLWGGLGLLGSLVVGQA-VQWLR 90 (341)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5557777777766655554 44443
No 100
>PRK00523 hypothetical protein; Provisional
Probab=21.22 E-value=2.2e+02 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhcc-ccc
Q 022850 112 FIFLIGVFMSSWLGASVLSLGEWFIKR-MPF 141 (291)
Q Consensus 112 lIfliG~l~~~~lg~~l~~~~E~~l~r-IPl 141 (291)
+++++|++.--++.++ ++|+.|++ -|+
T Consensus 13 ~~li~G~~~Gffiark---~~~k~l~~NPpi 40 (72)
T PRK00523 13 PLLIVGGIIGYFVSKK---MFKKQIRENPPI 40 (72)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHCcCC
Confidence 3467777777666665 66777764 444
No 101
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=21.22 E-value=4.3e+02 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 022850 111 TFIFLIGVFMSSWLGASVLSL 131 (291)
Q Consensus 111 ~lIfliG~l~~~~lg~~l~~~ 131 (291)
.+.+++++++.++.++.+-.+
T Consensus 102 ~~al~~sl~~~~~~~~~la~i 122 (202)
T PF07290_consen 102 PVALFLSLFFTRYLGRPLARI 122 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHh
Confidence 345666777777666654443
No 102
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=21.09 E-value=4.1e+02 Score=21.11 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=24.0
Q ss_pred HhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 022850 61 KFMTGCVILFPIAVTFYITWWFIHFVDGFF 90 (291)
Q Consensus 61 ~FltGLlvLlPIaiTi~Il~wl~~~vd~~~ 90 (291)
.|++=++.++|.++..|=+.+.=+.+-+.+
T Consensus 3 R~iAlliLvIPg~~a~yGiklMRD~~F~~~ 32 (77)
T PF11118_consen 3 RFIALLILVIPGILAAYGIKLMRDTVFGIL 32 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778899999999999888877766655
No 103
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=21.02 E-value=1.5e+02 Score=29.23 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=49.4
Q ss_pred EEEcCCCCeeEEEEeccccc---------------------ccc-------cCCCcceEEEEecCCCCCceeEEEEeCCC
Q 022850 197 IIRHPRIGEYAFGFITSSVV---------------------LQN-------YSGEEELCCVYVPTNHLYIGDIFLINTKD 248 (291)
Q Consensus 197 lV~~P~~g~~~iGFvT~~~~---------------------~~~-------~~~~e~~v~VfVPtsp~~sG~l~lV~~~d 248 (291)
-..||+.-.|++.||..+.. ++. ..-+++.+.+|+|-+|.+-|-+.++|++.
T Consensus 161 Sl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH 240 (347)
T TIGR00209 161 SNPHPHGQIWANSFLPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAH 240 (347)
T ss_pred CCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccC
Confidence 34689999999999987641 000 12236789999999998899999999999
Q ss_pred eecC-CCCHHHHHHH
Q 022850 249 VIRP-NLSVREGIEI 262 (291)
Q Consensus 249 V~~l-DmSveeAmk~ 262 (291)
+... |++-++...+
T Consensus 241 ~~~~~dl~d~e~~~L 255 (347)
T TIGR00209 241 VLRITDLTDAQRSDL 255 (347)
T ss_pred CCChhhCCHHHHHHH
Confidence 9774 8887765443
No 104
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.00 E-value=1.3e+02 Score=22.95 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhccccc
Q 022850 110 VTFIFLIGVFMSSWLGASVLSLGEWFIKRMPF 141 (291)
Q Consensus 110 i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPl 141 (291)
+++++++|+++-.+++++ .+++-|++=|=
T Consensus 3 iilali~G~~~Gff~ar~---~~~k~l~~NPp 31 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK---YMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHCCC
Confidence 345566666666665554 56777766654
No 105
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=20.92 E-value=1.3e+02 Score=20.72 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 022850 104 LGFITSVTFIFLIGVFMSSWL 124 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~l 124 (291)
.|+++.++-+.++|+++..|+
T Consensus 7 ~GiVLGlipvTl~GlfvaAyl 27 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYL 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 477788888999999998875
No 106
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=20.91 E-value=1.6e+02 Score=20.37 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 022850 105 GFITSVTFIFLIGVFMSSWL 124 (291)
Q Consensus 105 G~l~~i~lIfliG~l~~~~l 124 (291)
++-..+++||++|++.++++
T Consensus 16 SLY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 16 SLYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhh
Confidence 34445677899999998875
No 107
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.87 E-value=3.2e+02 Score=30.67 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc-ccchhHHHHHH
Q 022850 104 LGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKR-MPFVRHIYNAS 149 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~r-IPlVk~IYsai 149 (291)
+++...+.++.++|+.++|.+ -+++.+++..++ ++.-..+-.+.
T Consensus 922 l~~~sl~G~i~l~GivVnnaI--vlvd~~~~~~~~G~~~~~Ai~~a~ 966 (1044)
T TIGR00915 922 NDVYFQVGLLTTIGLSAKNAI--LIVEFAKELMAQGKSIVEAALEAA 966 (1044)
T ss_pred ccHHHHHHHHHHHHHHHcceE--eeHHHHHHHHHcCCCHHHHHHHHH
Confidence 456667889999999999865 344555554443 55533333333
No 108
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=20.76 E-value=2.3e+02 Score=25.72 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHH
Q 022850 104 LGFITSVTFIFLIGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQIS 153 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~lg~~l~~~~E~~l~rIPlVk~IYsaiKqi~ 153 (291)
+|+.+++++-++.++......-.|++. +|.=+|+ |=.+|...
T Consensus 34 lG~~~Lv~~Sl~~~~~l~~ip~~wiLG----lLGliPI----~lGi~~l~ 75 (191)
T PF03596_consen 34 LGFTILVLASLLGAFGLLFIPPEWILG----LLGLIPI----YLGIKALF 75 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHH----HHHHHHHH
Confidence 555555444444444444333334333 3577888 77888653
No 109
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=20.50 E-value=6.2e+02 Score=22.59 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=43.7
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHHHHHHHh
Q 022850 44 HAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIGVFMSSW 123 (291)
Q Consensus 44 ~~~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG~l~~~~ 123 (291)
.+-+++..+-+++.+++.+.+.+..+++.+..++.- +-.+ -+|.+.+++=.++|.+.+.+
T Consensus 118 ~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g------------------~~~l--~~Fa~~l~iGvi~~~~ss~~ 177 (189)
T PF02355_consen 118 KSLREAINISIKQTLSRTIDTSLTTLLAALILFFFG------------------GGSL--KGFALTLIIGVIIGTYSSLF 177 (189)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------cchH--HHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888877666654322110 0111 24444445556788888888
Q ss_pred hHHHHHHHHH
Q 022850 124 LGASVLSLGE 133 (291)
Q Consensus 124 lg~~l~~~~E 133 (291)
+.+.++.+++
T Consensus 178 ia~~l~~~l~ 187 (189)
T PF02355_consen 178 IARPLLYWLV 187 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 110
>PRK10160 taurine transporter subunit; Provisional
Probab=20.36 E-value=7e+02 Score=23.16 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=19.8
Q ss_pred HHHHHHHHhHhhhhhhccchhhhHHHHHHHHHHHHH
Q 022850 82 FIHFVDGFFSPIYAQLGIDIFGLGFITSVTFIFLIG 117 (291)
Q Consensus 82 l~~~vd~~~~pi~~~lg~~ipGlG~l~~i~lIfliG 117 (291)
....+++++.|++..+ ..+|.+.++..+++.|-.|
T Consensus 107 ~~~~~~~~l~~~~~~l-~~iP~i~~~pl~~~~fG~g 141 (275)
T PRK10160 107 LSPTVRGILDPLIELY-RPVPPLAYLPLMVIWFGIG 141 (275)
T ss_pred HhHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHcCC
Confidence 3556777777776543 4466666654444444333
Done!