Query 022850
Match_columns 291
No_of_seqs 138 out of 620
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0t_A Uncharacterized protein 73.3 3.4 0.00012 33.1 4.1 41 223-263 24-65 (138)
2 3ksv_A Uncharacterized protein 70.9 3.9 0.00013 33.7 4.1 41 223-263 30-71 (149)
3 3o0m_A HIT family protein; ssg 69.4 5.8 0.0002 32.3 4.8 40 223-262 24-64 (149)
4 1fit_A FragIle histidine prote 68.6 4.8 0.00016 32.5 4.1 41 223-263 18-59 (147)
5 3imi_A HIT family protein; str 67.4 5.6 0.00019 32.3 4.3 40 223-262 28-68 (147)
6 3lb5_A HIT-like protein involv 67.1 6.5 0.00022 32.8 4.7 40 223-262 47-87 (161)
7 2eo4_A 150AA long hypothetical 65.5 6 0.0002 32.0 4.1 41 223-263 18-59 (149)
8 3l7x_A SMU.412C, putative HIT- 65.1 6.1 0.00021 33.5 4.2 41 223-263 55-96 (173)
9 2oik_A Histidine triad (HIT) p 64.3 6.9 0.00023 31.9 4.2 40 223-262 25-65 (154)
10 1y23_A HIT, histidine triad pr 62.2 5.1 0.00017 32.1 3.0 40 223-262 24-64 (145)
11 3r6f_A HIT family protein; str 58.9 3.4 0.00012 33.2 1.4 37 223-259 23-60 (135)
12 3oj7_A Putative histidine tria 58.8 6.3 0.00022 30.6 2.9 36 223-258 26-62 (117)
13 3n1s_A HIT-like protein HINT; 58.8 8.8 0.0003 30.1 3.8 36 223-258 22-58 (119)
14 4egu_A Histidine triad (HIT) p 58.1 5.4 0.00018 31.0 2.4 36 223-258 23-59 (119)
15 3o1c_A Histidine triad nucleot 48.6 13 0.00044 29.3 3.2 36 223-258 34-70 (126)
16 3tx3_A Uncharacterized protein 45.9 1.5E+02 0.005 26.5 10.1 46 43-90 10-59 (249)
17 3ano_A AP-4-A phosphorylase; d 45.0 19 0.00064 31.8 4.0 40 223-262 89-129 (218)
18 1xqu_A HIT family hydrolase; p 44.7 10 0.00035 31.2 2.2 36 223-258 54-90 (147)
19 1ems_A Nitfhit, NIT-fragIle hi 34.6 32 0.0011 32.3 4.1 41 223-263 314-355 (440)
20 3ohe_A Histidine triad (HIT) p 32.3 46 0.0016 26.8 4.2 40 223-262 18-58 (137)
21 3i24_A HIT family hydrolase; s 32.2 41 0.0014 27.7 3.9 40 223-262 18-58 (149)
22 2rdd_B UPF0092 membrane protei 31.9 27 0.00092 22.5 2.2 18 65-82 2-19 (37)
23 1gup_A Galactose-1-phosphate u 30.0 42 0.0014 31.1 4.0 39 223-261 215-254 (348)
24 1pp9_G Ubiquinol-cytochrome C 28.9 1.6E+02 0.0055 22.2 6.4 47 39-85 19-65 (81)
25 2onk_C Molybdate/tungstate ABC 24.6 3E+02 0.01 23.7 8.5 40 104-143 83-124 (284)
26 1q90_G Cytochrome B6F complex 21.5 95 0.0033 20.5 3.3 21 104-124 7-27 (37)
27 2gww_B IPAA; protein complex, 21.3 44 0.0015 20.7 1.5 16 143-158 9-24 (30)
28 3i4s_A Histidine triad protein 20.5 1E+02 0.0036 25.2 4.3 38 225-263 25-64 (149)
No 1
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=73.35 E-value=3.4 Score=33.10 Aligned_cols=41 Identities=5% Similarity=0.173 Sum_probs=34.5
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+++.+.+|++-.|.+-|.++++|++.+..+ |++.++...+.
T Consensus 24 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~ 65 (138)
T 3p0t_A 24 EDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVM 65 (138)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHH
T ss_pred eCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHH
Confidence 467889999999988999999999998874 89988876543
No 2
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=70.94 E-value=3.9 Score=33.65 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=34.8
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+++.+.+|+|-.|..-|-++++|++.+..+ |++-+|...+.
T Consensus 30 ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~ 71 (149)
T 3ksv_A 30 ETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHH
Confidence 467889999999988999999999998874 99988866554
No 3
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=69.37 E-value=5.8 Score=32.29 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=33.9
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++-++...+
T Consensus 24 e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l 64 (149)
T 3o0m_A 24 EDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGM 64 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHH
Confidence 467889999999988999999999998874 8998876544
No 4
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=68.60 E-value=4.8 Score=32.54 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=34.6
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+++.+.+|++-.|..-|.++++|++.+..+ |++.+|...+.
T Consensus 18 e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~ 59 (147)
T 1fit_A 18 KTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLF 59 (147)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHH
Confidence 467899999999988999999999988875 89988865544
No 5
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=67.44 E-value=5.6 Score=32.34 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.9
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++.+|...+
T Consensus 28 e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l 68 (147)
T 3imi_A 28 EDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHI 68 (147)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHH
Confidence 467889999999988999999999998874 8998886544
No 6
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=67.14 E-value=6.5 Score=32.77 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=34.0
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+++.+.+|+|-.|..-|-++++|++.+..+ |++-||...+
T Consensus 47 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l 87 (161)
T 3lb5_A 47 EDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPV 87 (161)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHH
T ss_pred ECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHH
Confidence 467889999999988999999999998875 8998886644
No 7
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=65.52 E-value=6 Score=32.03 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=34.4
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+++.+.+|+|-.|..-|.++++|++.+..+ |++.+|...+.
T Consensus 18 e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~ 59 (149)
T 2eo4_A 18 EDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELA 59 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHH
Confidence 467889999999988899999999988875 89988876553
No 8
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=65.08 E-value=6.1 Score=33.49 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=34.4
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++-+|...+.
T Consensus 55 e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~ 96 (173)
T 3l7x_A 55 EDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLF 96 (173)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHH
Confidence 467889999999988999999999998764 89988765443
No 9
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=64.29 E-value=6.9 Score=31.91 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=33.9
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+++.+.+|+|-.|..-|.++++|++.+..+ |++-+|...+
T Consensus 25 e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l 65 (154)
T 2oik_A 25 QDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHL 65 (154)
T ss_dssp ECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHH
T ss_pred ECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHH
Confidence 467889999999988999999999999875 8998886543
No 10
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=62.18 E-value=5.1 Score=32.11 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=33.4
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+++.+.+|+|-.|..-|.++++|++.+..+ |++-+|...+
T Consensus 24 e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l 64 (145)
T 1y23_A 24 EDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQY 64 (145)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTT
T ss_pred ECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHH
Confidence 467889999999988899999999998775 8998886543
No 11
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=58.86 E-value=3.4 Score=33.19 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=31.8
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREG 259 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeA 259 (291)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++.+|.
T Consensus 23 e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~ 60 (135)
T 3r6f_A 23 ETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEEL 60 (135)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHH
Confidence 467889999999988999999999998764 8887764
No 12
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=58.84 E-value=6.3 Score=30.57 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=30.0
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
+++.+.+|+|-.|..-|-++++|++.+..+ |++-||
T Consensus 26 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 62 (117)
T 3oj7_A 26 EDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEEN 62 (117)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTT
T ss_pred ECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHH
Confidence 467789999999988999999999998874 777553
No 13
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=58.83 E-value=8.8 Score=30.05 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.9
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
+++.+.+|.+-.|..-|.++++|++.+..+ |++-||
T Consensus 22 ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e 58 (119)
T 3n1s_A 22 QDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEH 58 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHH
Confidence 467789999999988999999999998875 888773
No 14
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=58.07 E-value=5.4 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=30.4
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
+++.+.+|+|-.|..-|-++++|++.+..+ |++.||
T Consensus 23 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 59 (119)
T 4egu_A 23 EDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKE 59 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhH
Confidence 467789999999988999999999998874 888653
No 15
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=48.56 E-value=13 Score=29.33 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=30.6
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
+++.+.+|.+-.|..-|-++++|++.+..+ |++-+|
T Consensus 34 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 70 (126)
T 3o1c_A 34 EDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDAD 70 (126)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEechHhchHhhCchhH
Confidence 467889999999988999999999998874 787655
No 16
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=45.95 E-value=1.5e+02 Score=26.49 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCCchHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH----HHHHHHHHHHh
Q 022850 43 HHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYIT----WWFIHFVDGFF 90 (291)
Q Consensus 43 ~~~~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il----~wl~~~vd~~~ 90 (291)
...|-.+|.+-+|...+..+ .+ .+++|+.+++.+. |++++.+++.+
T Consensus 10 ~~~G~~~~~~g~~~i~~p~l-r~-~vl~Pllinl~L~~~~~~~~~~~~~~~i 59 (249)
T 3tx3_A 10 SNSGLAYIGRGLELIRTKGL-RR-YVVVPILTNLILFSLAFTWLYGEVDYWL 59 (249)
T ss_dssp CSCSTTHHHHHHHHHTSTTT-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHcCchH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778887776432222 22 5778888887664 34434444443
No 17
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=45.03 E-value=19 Score=31.77 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=33.7
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+++.+.+|++-.|..-|-++++|++-+..+ |++-+|...+
T Consensus 89 edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L 129 (218)
T 3ano_A 89 RGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAEL 129 (218)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHH
T ss_pred ECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHH
Confidence 467899999999988999999999998875 8998876543
No 18
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=44.72 E-value=10 Score=31.16 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=30.1
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 258 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSvee 258 (291)
+++.+.+|+|-.|..-|-++++|++.+..+ |++-+|
T Consensus 54 e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e 90 (147)
T 1xqu_A 54 EDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESN 90 (147)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTT
T ss_pred ECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHH
Confidence 467899999999988999999999988874 776544
No 19
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=34.62 E-value=32 Score=32.33 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 263 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~v 263 (291)
+++.+.+|+|-.|..-|.++++|++.+..+ |++-+|..++.
T Consensus 314 e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~ 355 (440)
T 1ems_A 314 STPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLF 355 (440)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHH
T ss_pred ECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHH
Confidence 467899999999988999999999998875 89988865544
No 20
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=32.33 E-value=46 Score=26.76 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=30.4
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+.+.+.||+=-.|.+-|.++++|++.+..+ |++.||..++
T Consensus 18 ~~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l 58 (137)
T 3ohe_A 18 ESRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRL 58 (137)
T ss_dssp ECSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHH
T ss_pred ECCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHH
Confidence 356677888777777798888777888875 9999987544
No 21
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=32.17 E-value=41 Score=27.70 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=29.9
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 262 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk~ 262 (291)
+.+.+.||+=-.|.+-|.++++|++.+..+ |++.||+.++
T Consensus 18 ~~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l 58 (149)
T 3i24_A 18 NLPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQF 58 (149)
T ss_dssp ECSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHH
Confidence 356777888777777798877777788774 9999987544
No 22
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=31.88 E-value=27 Score=22.49 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=12.4
Q ss_pred hhHhHHHHHHHHHHHHHH
Q 022850 65 GCVILFPIAVTFYITWWF 82 (291)
Q Consensus 65 GLlvLlPIaiTi~Il~wl 82 (291)
|+..++|+++.+.++||+
T Consensus 2 ~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 2 PMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 456677887777666665
No 23
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=30.00 E-value=42 Score=31.12 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.2
Q ss_pred CcceEEEEecCCCCCceeEEEEeCCCeecC-CCCHHHHHH
Q 022850 223 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIE 261 (291)
Q Consensus 223 ~e~~v~VfVPtsp~~sG~l~lV~~~dV~~l-DmSveeAmk 261 (291)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++-+|.-.
T Consensus 215 E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~ 254 (348)
T 1gup_A 215 ETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSD 254 (348)
T ss_dssp ECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHH
T ss_pred eCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHH
Confidence 478899999999988899999999998875 898877643
No 24
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=28.91 E-value=1.6e+02 Score=22.19 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=31.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHH
Q 022850 39 SSSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHF 85 (291)
Q Consensus 39 ~~~~~~~~~~~~~~~lr~~l~~~FltGLlvLlPIaiTi~Il~wl~~~ 85 (291)
|+..|++-...|.+-+-...++.-=+-+.++.|++++.++..|.-+-
T Consensus 19 SP~~Qr~~~g~~~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 19 SPFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQE 65 (81)
T ss_dssp CTTTBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccccchHhhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHH
Confidence 44556666666666666665555555567788888888887777553
No 25
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=24.59 E-value=3e+02 Score=23.70 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHhhccccchh
Q 022850 104 LGFITSVTFIFLIGVFMSSW--LGASVLSLGEWFIKRMPFVR 143 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~--lg~~l~~~~E~~l~rIPlVk 143 (291)
.+.++.+++-+.+|++.... -+++++..+=.+..-+|.+-
T Consensus 83 ~~~~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v 124 (284)
T 2onk_C 83 ISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTV 124 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666542 34555555555556677644
No 26
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=21.48 E-value=95 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 022850 104 LGFITSVTFIFLIGVFMSSWL 124 (291)
Q Consensus 104 lG~l~~i~lIfliG~l~~~~l 124 (291)
.|+++.++-+.++|+++..|+
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHH
Confidence 577888888999999998775
No 27
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=21.29 E-value=44 Score=20.68 Aligned_cols=16 Identities=31% Similarity=0.675 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHhcC
Q 022850 143 RHIYNASKQISAAISP 158 (291)
Q Consensus 143 k~IYsaiKqi~~~~~~ 158 (291)
+.||.+.||+..+++.
T Consensus 9 nniykaakdvttslsk 24 (30)
T 2gww_B 9 NNIYKAAKDVTTSLSK 24 (30)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 4689999999999863
No 28
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=20.49 E-value=1e+02 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=26.1
Q ss_pred ceEEEEecCCCCCceeEEEEeCC-CeecC-CCCHHHHHHHH
Q 022850 225 ELCCVYVPTNHLYIGDIFLINTK-DVIRP-NLSVREGIEIV 263 (291)
Q Consensus 225 ~~v~VfVPtsp~~sG~l~lV~~~-dV~~l-DmSveeAmk~v 263 (291)
..+.||+ ..|++-|.+++||++ .+..+ |++.||..++.
T Consensus 25 p~~~v~l-~~~~~~~H~LVIPk~~H~~~l~dL~~e~~~~l~ 64 (149)
T 3i4s_A 25 PLSKVLV-IKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLM 64 (149)
T ss_dssp SSEEEEE-ESCTTSCEEEEEECCTTCCSGGGSCHHHHHHHH
T ss_pred CceEEEE-CCCCCCCEEEEEecccccCChhHCCHHHHHHHH
Confidence 4456666 345555668889999 58874 99998875543
Done!