Query 022851
Match_columns 291
No_of_seqs 176 out of 2380
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 7.9E-44 1.7E-48 300.8 34.0 283 2-288 3-285 (286)
2 TIGR02295 HpaD 3,4-dihydroxyph 100.0 1.9E-31 4E-36 227.0 29.1 237 20-282 1-257 (294)
3 TIGR03211 catechol_2_3 catecho 100.0 1.9E-31 4.2E-36 227.8 28.3 238 21-280 2-264 (303)
4 KOG2943 Predicted glyoxalase [ 100.0 2.3E-31 5E-36 205.2 21.1 259 13-290 7-279 (299)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 2.4E-30 5.2E-35 219.1 27.2 237 21-281 1-263 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 6.6E-23 1.4E-27 178.0 22.3 224 22-255 1-267 (353)
7 PLN02875 4-hydroxyphenylpyruva 99.9 8.9E-21 1.9E-25 163.2 21.7 224 24-255 1-295 (398)
8 TIGR00068 glyox_I lactoylgluta 99.9 2.6E-20 5.5E-25 142.6 15.0 137 149-289 13-149 (150)
9 PLN02367 lactoylglutathione ly 99.9 1.9E-20 4.1E-25 149.2 14.3 132 151-288 73-229 (233)
10 TIGR00068 glyox_I lactoylgluta 99.8 2.3E-19 5E-24 137.4 18.4 137 13-149 7-143 (150)
11 COG2514 Predicted ring-cleavag 99.8 7.7E-19 1.7E-23 140.1 21.5 194 20-232 7-242 (265)
12 PRK10291 glyoxalase I; Provisi 99.8 5.5E-19 1.2E-23 131.8 16.1 125 28-152 1-125 (129)
13 PLN02367 lactoylglutathione ly 99.8 1.5E-18 3.3E-23 138.3 18.5 129 19-149 71-224 (233)
14 PRK10291 glyoxalase I; Provisi 99.8 2.8E-19 6.1E-24 133.4 13.4 122 158-283 1-122 (129)
15 KOG0638 4-hydroxyphenylpyruvat 99.8 1.1E-19 2.3E-24 146.5 10.0 231 20-256 14-292 (381)
16 PLN03042 Lactoylglutathione ly 99.8 5.5E-18 1.2E-22 132.6 19.0 146 1-148 1-175 (185)
17 PLN03042 Lactoylglutathione ly 99.8 9.1E-19 2E-23 137.0 14.1 129 150-284 24-177 (185)
18 cd08342 HPPD_N_like N-terminal 99.8 1.8E-18 3.8E-23 130.2 13.2 122 154-286 1-128 (136)
19 PRK11478 putative lyase; Provi 99.8 6.7E-18 1.5E-22 125.8 16.1 123 19-146 2-128 (129)
20 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 7.9E-18 1.7E-22 127.7 16.5 123 21-147 1-141 (142)
21 cd07233 Glyoxalase_I Glyoxalas 99.8 5.6E-18 1.2E-22 124.7 14.4 120 154-279 1-121 (121)
22 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 3.6E-18 7.9E-23 129.5 13.7 122 152-281 2-141 (142)
23 PLN02300 lactoylglutathione ly 99.8 3.9E-18 8.5E-23 144.2 14.5 133 150-286 21-153 (286)
24 cd07233 Glyoxalase_I Glyoxalas 99.8 1.8E-17 3.8E-22 122.0 16.0 120 24-145 1-121 (121)
25 cd08358 Glo_EDI_BRP_like_21 Th 99.8 2.5E-17 5.3E-22 120.9 16.0 115 22-146 1-126 (127)
26 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.9E-17 6.3E-22 121.4 15.5 124 21-146 1-125 (125)
27 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 3.9E-17 8.5E-22 120.8 15.0 119 23-145 1-125 (125)
28 cd08342 HPPD_N_like N-terminal 99.8 3.3E-17 7.1E-22 123.3 14.2 120 24-150 1-126 (136)
29 cd07257 THT_oxygenase_C The C- 99.8 7.5E-18 1.6E-22 129.2 10.8 123 153-283 1-127 (153)
30 cd08360 MhqB_like_C C-terminal 99.8 2.9E-17 6.2E-22 123.3 13.6 124 151-285 1-124 (134)
31 cd07243 2_3_CTD_C C-terminal d 99.8 3.1E-17 6.8E-22 124.3 13.8 121 151-281 4-125 (143)
32 cd08358 Glo_EDI_BRP_like_21 Th 99.7 5.2E-17 1.1E-21 119.2 13.8 114 153-280 2-126 (127)
33 TIGR03645 glyox_marine lactoyl 99.7 3.7E-17 8E-22 126.5 13.6 125 152-283 3-153 (162)
34 PRK04101 fosfomycin resistance 99.7 1.2E-16 2.6E-21 120.7 16.1 118 20-148 1-120 (139)
35 PRK11478 putative lyase; Provi 99.7 5.1E-17 1.1E-21 121.1 13.4 120 152-280 5-128 (129)
36 TIGR03645 glyox_marine lactoyl 99.7 1.5E-16 3.3E-21 123.1 16.3 126 21-149 2-153 (162)
37 cd07257 THT_oxygenase_C The C- 99.7 7.3E-17 1.6E-21 123.7 14.0 119 23-148 1-126 (153)
38 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 6.3E-17 1.4E-21 119.7 13.0 119 153-279 1-125 (125)
39 cd07243 2_3_CTD_C C-terminal d 99.7 2.6E-16 5.6E-21 119.3 16.5 119 20-147 3-125 (143)
40 cd07256 HPCD_C_class_II C-term 99.7 1.2E-16 2.5E-21 123.7 14.3 122 151-282 1-124 (161)
41 cd07258 PpCmtC_C C-terminal do 99.7 1.1E-16 2.4E-21 120.7 13.2 116 155-283 1-116 (141)
42 cd07265 2_3_CTD_N N-terminal d 99.7 3.3E-16 7.1E-21 115.5 15.3 116 21-148 2-120 (122)
43 cd08360 MhqB_like_C C-terminal 99.7 4.3E-16 9.2E-21 116.9 15.9 117 22-148 2-121 (134)
44 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 1.7E-16 3.6E-21 117.3 13.4 121 152-280 2-125 (125)
45 TIGR03081 metmalonyl_epim meth 99.7 8E-17 1.7E-21 119.7 11.2 119 23-146 1-128 (128)
46 cd07237 BphC1-RGP6_C_like C-te 99.7 1.9E-16 4.1E-21 121.6 13.2 125 150-283 6-133 (154)
47 cd07247 SgaA_N_like N-terminal 99.7 3.4E-16 7.3E-21 114.0 13.6 114 154-280 1-114 (114)
48 TIGR03081 metmalonyl_epim meth 99.7 1.8E-16 4E-21 117.8 12.3 119 153-280 1-128 (128)
49 cd07265 2_3_CTD_N N-terminal d 99.7 2.8E-16 6.1E-21 115.9 12.7 116 151-282 2-120 (122)
50 PF00903 Glyoxalase: Glyoxalas 99.7 1.7E-16 3.7E-21 117.6 11.3 120 23-144 1-128 (128)
51 cd09014 BphC-JF8_C_like C-term 99.7 1.4E-15 3E-20 118.2 16.4 124 19-148 2-128 (166)
52 cd07237 BphC1-RGP6_C_like C-te 99.7 1.8E-15 3.9E-20 116.1 15.7 123 19-149 5-133 (154)
53 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1.4E-15 2.9E-20 112.4 14.0 118 21-146 1-124 (125)
54 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1.4E-15 3E-20 111.8 13.7 116 22-147 1-119 (120)
55 cd08364 FosX FosX, a fosfomyci 99.7 3.2E-15 7E-20 111.6 15.6 120 20-148 1-123 (131)
56 cd08363 FosB FosB, a fosfomyci 99.7 1E-15 2.2E-20 114.3 12.7 117 154-285 1-119 (131)
57 cd07247 SgaA_N_like N-terminal 99.7 2.9E-15 6.3E-20 109.0 14.8 114 24-146 1-114 (114)
58 cd09013 BphC-JF8_N_like N-term 99.7 2.6E-15 5.7E-20 110.5 14.6 115 19-148 2-119 (121)
59 cd08361 PpCmtC_N N-terminal do 99.7 1.6E-15 3.5E-20 112.1 13.5 113 20-148 3-120 (124)
60 cd09011 Glo_EDI_BRP_like_23 Th 99.7 9E-16 1.9E-20 112.9 12.0 113 153-281 2-119 (120)
61 cd07256 HPCD_C_class_II C-term 99.7 4.5E-15 9.7E-20 114.8 16.3 118 22-148 2-124 (161)
62 cd07263 Glo_EDI_BRP_like_16 Th 99.7 1.2E-15 2.6E-20 111.6 12.3 117 156-280 1-119 (119)
63 cd08355 Glo_EDI_BRP_like_14 Th 99.7 2.7E-15 5.8E-20 110.6 14.1 115 157-280 3-121 (122)
64 PRK06724 hypothetical protein; 99.7 4.2E-15 9.2E-20 110.2 15.1 114 19-148 3-124 (128)
65 cd08343 ED_TypeI_classII_C C-t 99.7 2E-15 4.2E-20 112.9 13.4 118 155-285 1-121 (131)
66 PRK04101 fosfomycin resistance 99.7 2.3E-15 4.9E-20 113.7 13.7 117 152-283 3-121 (139)
67 cd07263 Glo_EDI_BRP_like_16 Th 99.7 3.4E-15 7.4E-20 109.2 14.3 117 26-146 1-119 (119)
68 cd07266 HPCD_N_class_II N-term 99.7 2.6E-15 5.6E-20 110.5 13.7 116 20-148 1-119 (121)
69 cd08343 ED_TypeI_classII_C C-t 99.7 5.7E-15 1.2E-19 110.3 15.6 116 25-149 1-119 (131)
70 cd08363 FosB FosB, a fosfomyci 99.7 2.5E-15 5.3E-20 112.3 13.6 114 24-148 1-116 (131)
71 cd09014 BphC-JF8_C_like C-term 99.7 2.9E-15 6.3E-20 116.4 14.4 120 152-281 5-127 (166)
72 cd08355 Glo_EDI_BRP_like_14 Th 99.7 7.3E-15 1.6E-19 108.3 15.9 118 26-146 2-121 (122)
73 cd07249 MMCE Methylmalonyl-CoA 99.7 2.4E-15 5.1E-20 111.7 13.2 118 154-280 1-128 (128)
74 cd08347 PcpA_C_like C-terminal 99.7 1.8E-15 3.9E-20 116.3 12.8 118 153-283 1-122 (157)
75 cd07239 BphC5-RK37_C_like C-te 99.7 2.4E-15 5.3E-20 114.0 13.2 117 152-283 3-119 (144)
76 PF00903 Glyoxalase: Glyoxalas 99.7 5.3E-16 1.2E-20 115.0 9.3 120 153-278 1-128 (128)
77 cd09013 BphC-JF8_N_like N-term 99.7 3.2E-15 6.9E-20 110.1 13.2 116 151-282 4-119 (121)
78 COG3185 4-hydroxyphenylpyruvat 99.7 1E-14 2.2E-19 120.4 17.3 224 19-256 18-275 (363)
79 cd07239 BphC5-RK37_C_like C-te 99.7 7.6E-15 1.6E-19 111.3 15.2 114 22-149 3-119 (144)
80 cd07264 Glo_EDI_BRP_like_15 Th 99.7 4E-15 8.6E-20 110.1 13.3 115 154-281 1-125 (125)
81 cd08346 PcpA_N_like N-terminal 99.7 5.8E-15 1.3E-19 109.2 14.1 120 23-145 1-126 (126)
82 cd08347 PcpA_C_like C-terminal 99.7 8.5E-15 1.8E-19 112.6 15.4 117 23-148 1-121 (157)
83 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 4.3E-15 9.3E-20 109.7 13.3 117 152-280 2-124 (125)
84 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.1E-14 2.4E-19 107.2 15.3 116 27-147 5-122 (122)
85 cd07255 Glo_EDI_BRP_like_12 Th 99.6 1.5E-14 3.2E-19 107.0 15.9 117 22-149 1-121 (125)
86 cd07264 Glo_EDI_BRP_like_15 Th 99.6 1E-14 2.3E-19 107.8 15.1 117 24-147 1-125 (125)
87 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 3.2E-15 6.9E-20 108.3 12.0 113 24-144 1-114 (114)
88 cd08364 FosX FosX, a fosfomyci 99.6 7.1E-15 1.5E-19 109.8 14.1 119 152-284 3-125 (131)
89 cd08351 ChaP_like ChaP, an enz 99.6 1.1E-14 2.4E-19 107.5 14.9 112 21-148 2-122 (123)
90 cd07258 PpCmtC_C C-terminal do 99.6 9.3E-15 2E-19 110.3 14.5 114 25-150 1-117 (141)
91 cd07240 ED_TypeI_classII_N N-t 99.6 1.1E-14 2.5E-19 106.3 14.6 112 22-148 1-115 (117)
92 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 8.8E-15 1.9E-19 108.8 14.2 117 153-281 1-128 (128)
93 cd07267 THT_Oxygenase_N N-term 99.6 1.6E-14 3.4E-19 105.1 15.1 111 21-148 1-111 (113)
94 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 2.9E-15 6.3E-20 108.5 11.2 113 154-278 1-114 (114)
95 cd08359 Glo_EDI_BRP_like_22 Th 99.6 1.1E-14 2.4E-19 106.8 14.3 112 25-146 3-119 (119)
96 cd07249 MMCE Methylmalonyl-CoA 99.6 3.8E-15 8.3E-20 110.6 12.0 119 24-146 1-128 (128)
97 cd07252 BphC1-RGP6_N_like N-te 99.6 9.6E-15 2.1E-19 107.4 13.9 113 22-148 1-118 (120)
98 cd08346 PcpA_N_like N-terminal 99.6 5.1E-15 1.1E-19 109.5 12.5 119 153-279 1-126 (126)
99 cd07266 HPCD_N_class_II N-term 99.6 4.4E-15 9.6E-20 109.3 12.1 114 152-282 3-119 (121)
100 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1E-14 2.2E-19 107.4 14.0 115 157-280 5-121 (122)
101 COG3324 Predicted enzyme relat 99.6 6.3E-15 1.4E-19 106.2 12.3 120 151-282 7-126 (127)
102 PRK06724 hypothetical protein; 99.6 5.2E-15 1.1E-19 109.7 12.2 110 152-281 6-123 (128)
103 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 2.5E-14 5.3E-19 106.3 16.0 116 23-146 1-127 (128)
104 cd08351 ChaP_like ChaP, an enz 99.6 7.2E-15 1.6E-19 108.5 12.7 111 152-281 3-121 (123)
105 cd08361 PpCmtC_N N-terminal do 99.6 5.7E-15 1.2E-19 109.2 12.1 111 152-282 5-120 (124)
106 cd07252 BphC1-RGP6_N_like N-te 99.6 6.7E-15 1.5E-19 108.2 12.4 111 153-281 2-117 (120)
107 cd08362 BphC5-RrK37_N_like N-t 99.6 1.9E-14 4E-19 105.7 14.6 113 21-148 1-118 (120)
108 cd07255 Glo_EDI_BRP_like_12 Th 99.6 1.2E-14 2.5E-19 107.6 13.6 118 152-284 1-122 (125)
109 cd08348 BphC2-C3-RGP6_C_like T 99.6 1.3E-14 2.8E-19 108.8 14.0 123 153-284 1-123 (134)
110 cd08359 Glo_EDI_BRP_like_22 Th 99.6 1.6E-14 3.5E-19 105.9 13.0 112 156-280 4-119 (119)
111 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.7E-14 3.8E-19 104.6 12.8 109 156-281 3-111 (112)
112 cd07240 ED_TypeI_classII_N N-t 99.6 2.1E-14 4.5E-19 104.9 13.3 112 152-282 1-115 (117)
113 TIGR03211 catechol_2_3 catecho 99.6 4.1E-14 9E-19 120.9 16.4 121 18-147 140-265 (303)
114 cd08348 BphC2-C3-RGP6_C_like T 99.6 9.3E-14 2E-18 104.1 16.3 119 23-149 1-122 (134)
115 cd08362 BphC5-RrK37_N_like N-t 99.6 2.3E-14 5.1E-19 105.2 12.5 112 152-282 2-118 (120)
116 PF12681 Glyoxalase_2: Glyoxal 99.6 1.7E-14 3.6E-19 103.9 11.4 108 159-279 1-108 (108)
117 PF12681 Glyoxalase_2: Glyoxal 99.6 3.5E-14 7.7E-19 102.2 13.0 108 29-145 1-108 (108)
118 cd08349 BLMA_like Bleomycin bi 99.6 3E-14 6.4E-19 103.2 12.7 109 158-280 3-112 (112)
119 cd07267 THT_Oxygenase_N N-term 99.6 4E-14 8.6E-19 102.9 12.7 109 152-281 2-110 (113)
120 cd08345 Fosfomycin_RP Fosfomyc 99.6 2.6E-14 5.7E-19 103.8 11.6 109 156-281 1-111 (113)
121 cd08345 Fosfomycin_RP Fosfomyc 99.6 4.9E-14 1.1E-18 102.3 13.0 109 26-147 1-111 (113)
122 cd07244 FosA FosA, a Fosfomyci 99.6 4.6E-14 1E-18 103.9 12.0 109 23-148 1-111 (121)
123 TIGR02295 HpaD 3,4-dihydroxyph 99.6 1.3E-13 2.9E-18 117.3 16.6 121 19-148 132-257 (294)
124 cd07244 FosA FosA, a Fosfomyci 99.6 6.7E-14 1.5E-18 103.0 12.7 111 153-284 1-113 (121)
125 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1.3E-13 2.7E-18 101.8 14.1 114 24-145 1-122 (123)
126 cd08354 Glo_EDI_BRP_like_13 Th 99.6 1.4E-13 3E-18 101.3 14.2 113 24-146 1-121 (122)
127 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.6E-13 3.4E-18 99.6 14.3 109 26-147 3-111 (112)
128 KOG2943 Predicted glyoxalase [ 99.6 1.4E-14 3.1E-19 112.7 8.9 127 151-290 15-152 (299)
129 cd07262 Glo_EDI_BRP_like_19 Th 99.6 8.6E-14 1.9E-18 102.7 12.6 117 154-279 1-122 (123)
130 cd07261 Glo_EDI_BRP_like_11 Th 99.6 8.2E-14 1.8E-18 101.3 12.1 108 157-279 2-113 (114)
131 cd08344 MhqB_like_N N-terminal 99.6 1.9E-13 4.1E-18 99.1 13.8 108 22-148 1-110 (112)
132 cd08354 Glo_EDI_BRP_like_13 Th 99.6 9.7E-14 2.1E-18 102.1 12.3 114 154-281 1-122 (122)
133 PF13669 Glyoxalase_4: Glyoxal 99.6 7.7E-14 1.7E-18 100.7 11.4 95 25-121 1-97 (109)
134 cd08350 BLMT_like BLMT, a bleo 99.6 1.1E-13 2.4E-18 101.7 12.5 108 156-281 5-119 (120)
135 cd07254 Glo_EDI_BRP_like_20 Th 99.6 1.5E-13 3.3E-18 100.9 13.1 112 155-282 3-118 (120)
136 cd09012 Glo_EDI_BRP_like_24 Th 99.6 7.9E-14 1.7E-18 103.1 11.6 112 155-280 2-123 (124)
137 cd07254 Glo_EDI_BRP_like_20 Th 99.6 2.7E-13 5.9E-18 99.5 14.4 112 25-148 3-118 (120)
138 cd07235 MRD Mitomycin C resist 99.5 1.5E-13 3.2E-18 101.3 12.6 115 24-145 1-121 (122)
139 cd06587 Glo_EDI_BRP_like This 99.5 1E-13 2.2E-18 99.6 11.3 112 156-278 1-112 (112)
140 cd06587 Glo_EDI_BRP_like This 99.5 2.9E-13 6.3E-18 97.2 13.6 112 26-144 1-112 (112)
141 cd07235 MRD Mitomycin C resist 99.5 1.8E-13 3.9E-18 100.8 12.7 113 154-279 1-121 (122)
142 cd08349 BLMA_like Bleomycin bi 99.5 3.6E-13 7.9E-18 97.4 13.6 109 28-146 3-112 (112)
143 cd08357 Glo_EDI_BRP_like_18 Th 99.5 2.6E-13 5.7E-18 100.2 12.6 113 26-146 2-124 (125)
144 cd07261 Glo_EDI_BRP_like_11 Th 99.5 4.6E-13 1E-17 97.4 13.4 108 27-145 2-113 (114)
145 TIGR03213 23dbph12diox 2,3-dih 99.5 4.5E-13 9.8E-18 113.6 15.2 119 20-147 139-263 (286)
146 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1.8E-13 3.9E-18 101.1 10.9 113 156-280 2-124 (125)
147 cd08344 MhqB_like_N N-terminal 99.5 4.1E-13 8.8E-18 97.4 12.5 105 153-280 2-108 (112)
148 PF13669 Glyoxalase_4: Glyoxal 99.5 1.3E-13 2.9E-18 99.4 9.6 95 155-255 1-97 (109)
149 cd08350 BLMT_like BLMT, a bleo 99.5 6.5E-13 1.4E-17 97.6 13.4 108 26-147 5-119 (120)
150 COG3324 Predicted enzyme relat 99.5 1.4E-12 3E-17 94.2 14.4 121 20-148 6-126 (127)
151 cd09012 Glo_EDI_BRP_like_24 Th 99.5 7.1E-13 1.5E-17 97.9 12.6 113 24-146 1-123 (124)
152 cd08356 Glo_EDI_BRP_like_17 Th 99.5 5.6E-13 1.2E-17 96.8 11.6 104 157-280 5-113 (113)
153 cd07251 Glo_EDI_BRP_like_10 Th 99.5 6.8E-13 1.5E-17 97.4 11.9 110 157-280 2-120 (121)
154 cd07251 Glo_EDI_BRP_like_10 Th 99.4 2.6E-12 5.6E-17 94.3 12.5 110 27-146 2-120 (121)
155 KOG2944 Glyoxalase [Carbohydra 99.4 1.3E-12 2.9E-17 95.5 9.4 125 21-147 20-168 (170)
156 cd08356 Glo_EDI_BRP_like_17 Th 99.4 2.8E-12 6.1E-17 93.1 11.1 104 27-146 5-113 (113)
157 KOG2944 Glyoxalase [Carbohydra 99.4 6.8E-12 1.5E-16 91.8 10.2 117 154-281 43-168 (170)
158 cd07250 HPPD_C_like C-terminal 99.3 2.1E-11 4.5E-16 96.8 11.8 100 21-122 1-113 (191)
159 cd07250 HPPD_C_like C-terminal 99.3 3.3E-11 7.1E-16 95.6 9.8 99 152-256 2-113 (191)
160 COG3565 Predicted dioxygenase 99.2 2.2E-10 4.7E-15 79.1 10.9 119 22-148 3-130 (138)
161 COG2514 Predicted ring-cleavag 99.2 7.7E-10 1.7E-14 89.0 12.5 122 149-283 6-128 (265)
162 TIGR01263 4HPPD 4-hydroxypheny 99.1 4.3E-10 9.2E-15 98.0 11.6 104 17-122 152-268 (353)
163 cd06588 PhnB_like Escherichia 99.1 2.9E-09 6.4E-14 79.0 12.4 114 158-279 4-128 (128)
164 PF13468 Glyoxalase_3: Glyoxal 99.1 3.6E-09 7.8E-14 82.9 12.1 150 24-175 1-175 (175)
165 COG3565 Predicted dioxygenase 99.0 4.4E-09 9.6E-14 72.7 10.5 115 153-280 4-128 (138)
166 COG2764 PhnB Uncharacterized p 99.0 4.8E-08 1E-12 71.9 15.4 118 27-149 4-133 (136)
167 cd06588 PhnB_like Escherichia 99.0 4.2E-08 9.2E-13 72.7 14.3 111 27-144 3-127 (128)
168 COG2764 PhnB Uncharacterized p 99.0 2.6E-08 5.7E-13 73.3 12.6 117 158-283 5-133 (136)
169 PLN02875 4-hydroxyphenylpyruva 99.0 3.4E-09 7.3E-14 92.1 8.9 101 19-121 176-295 (398)
170 COG0346 GloA Lactoylglutathion 98.9 4.7E-09 1E-13 77.7 8.5 122 152-280 1-138 (138)
171 COG0346 GloA Lactoylglutathion 98.9 6E-09 1.3E-13 77.1 7.6 122 22-146 1-138 (138)
172 PF14696 Glyoxalase_5: Hydroxy 98.9 2E-08 4.3E-13 74.3 10.0 127 17-152 3-131 (139)
173 PF14506 CppA_N: CppA N-termin 98.9 1.4E-07 3.1E-12 66.3 13.3 115 24-148 1-115 (125)
174 COG3607 Predicted lactoylgluta 98.8 1.7E-07 3.7E-12 66.2 11.4 117 153-283 3-129 (133)
175 COG3607 Predicted lactoylgluta 98.7 1.2E-07 2.5E-12 67.0 8.8 117 22-147 2-127 (133)
176 KOG0638 4-hydroxyphenylpyruvat 98.6 8.3E-08 1.8E-12 78.5 5.5 129 152-286 16-153 (381)
177 PRK01037 trmD tRNA (guanine-N( 98.5 1.4E-06 3E-11 73.4 10.7 108 152-280 246-353 (357)
178 PRK01037 trmD tRNA (guanine-N( 98.5 1.9E-06 4.2E-11 72.6 10.8 106 22-147 246-354 (357)
179 COG3185 4-hydroxyphenylpyruvat 98.5 7.7E-07 1.7E-11 74.3 7.9 100 20-122 164-275 (363)
180 PRK10148 hypothetical protein; 98.3 2.4E-05 5.1E-10 59.3 12.9 115 158-281 6-141 (147)
181 PRK10148 hypothetical protein; 98.3 0.00014 3E-09 55.1 15.9 117 27-151 5-145 (147)
182 PF14506 CppA_N: CppA N-termin 98.2 5E-05 1.1E-09 53.7 11.3 115 156-284 3-117 (125)
183 PF14696 Glyoxalase_5: Hydroxy 98.1 8E-05 1.7E-09 55.3 10.9 117 153-284 9-129 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.8 9.4E-05 2E-09 57.9 7.5 87 154-250 1-101 (175)
185 PF06983 3-dmu-9_3-mt: 3-demet 96.6 0.12 2.5E-06 37.4 12.5 99 162-279 11-116 (116)
186 PF15067 FAM124: FAM124 family 96.1 0.074 1.6E-06 42.6 9.6 104 23-144 128-235 (236)
187 PF14507 CppA_C: CppA C-termin 96.1 0.019 4.1E-07 39.8 5.2 92 154-278 6-100 (101)
188 PF06983 3-dmu-9_3-mt: 3-demet 95.9 0.44 9.4E-06 34.4 12.3 101 26-145 6-116 (116)
189 PF15067 FAM124: FAM124 family 94.8 0.8 1.7E-05 36.9 11.1 108 150-278 125-235 (236)
190 PF14507 CppA_C: CppA C-termin 90.6 1.2 2.7E-05 30.9 6.0 92 24-144 6-100 (101)
191 COG3865 Uncharacterized protei 86.3 12 0.00025 27.9 9.1 43 226-280 81-123 (151)
192 PRK11700 hypothetical protein; 75.3 38 0.00082 26.6 10.1 77 22-102 38-120 (187)
193 PF06185 YecM: YecM protein; 75.0 38 0.00083 26.6 9.9 85 22-110 33-124 (185)
194 PF13670 PepSY_2: Peptidase pr 69.8 19 0.00042 23.9 5.5 45 102-149 30-75 (83)
195 PHA02754 hypothetical protein; 66.1 13 0.00027 22.8 3.4 50 231-282 14-63 (67)
196 cd07268 Glo_EDI_BRP_like_4 Thi 61.9 66 0.0014 24.2 8.1 75 24-102 2-82 (149)
197 PF13670 PepSY_2: Peptidase pr 60.3 21 0.00045 23.8 4.2 45 232-282 30-74 (83)
198 cd04882 ACT_Bt0572_2 C-termina 58.9 24 0.00052 21.6 4.2 26 92-117 39-64 (65)
199 COG0051 RpsJ Ribosomal protein 57.0 25 0.00054 24.7 4.1 48 226-274 11-58 (104)
200 PF07063 DUF1338: Domain of un 54.3 23 0.0005 30.3 4.4 43 25-68 36-83 (302)
201 KOG4657 Uncharacterized conser 51.6 38 0.00083 27.3 4.9 39 162-203 145-183 (246)
202 cd04883 ACT_AcuB C-terminal AC 48.7 40 0.00087 21.2 4.1 29 222-254 41-71 (72)
203 cd04895 ACT_ACR_1 ACT domain-c 47.4 77 0.0017 20.6 5.2 51 226-276 4-55 (72)
204 TIGR01046 S10_Arc_S20_Euk ribo 44.1 49 0.0011 23.0 4.1 46 228-274 10-55 (99)
205 COG4747 ACT domain-containing 42.5 1.3E+02 0.0028 21.8 6.2 88 22-119 40-135 (142)
206 PF07063 DUF1338: Domain of un 40.7 58 0.0013 27.9 4.8 30 219-252 181-216 (302)
207 PRK11700 hypothetical protein; 37.7 2E+02 0.0044 22.6 7.8 85 152-238 38-126 (187)
208 cd07268 Glo_EDI_BRP_like_4 Thi 37.4 1.8E+02 0.0039 22.0 9.0 80 154-235 2-85 (149)
209 PF02208 Sorb: Sorbin homologo 37.3 21 0.00045 20.7 1.1 24 152-175 10-33 (47)
210 PTZ00039 40S ribosomal protein 37.1 70 0.0015 23.0 4.0 46 228-274 26-71 (115)
211 PRK12271 rps10p 30S ribosomal 36.9 76 0.0016 22.3 4.1 46 228-274 11-56 (102)
212 PF06185 YecM: YecM protein; 35.1 2.2E+02 0.0049 22.4 8.1 79 152-232 33-115 (185)
213 PF09066 B2-adapt-app_C: Beta2 33.9 1.7E+02 0.0037 20.6 6.8 72 100-172 35-107 (114)
214 CHL00135 rps10 ribosomal prote 33.4 81 0.0018 22.1 3.8 47 227-274 15-61 (101)
215 COG4747 ACT domain-containing 33.0 43 0.00093 24.1 2.3 25 224-252 110-134 (142)
216 PF09142 TruB_C: tRNA Pseudour 32.6 80 0.0017 19.3 3.3 42 232-283 5-46 (56)
217 cd04906 ACT_ThrD-I_1 First of 32.5 97 0.0021 20.6 4.1 28 92-119 40-71 (85)
218 PRK00969 hypothetical protein; 30.9 1.1E+02 0.0024 28.1 5.0 76 102-181 325-406 (508)
219 KOG4657 Uncharacterized conser 30.6 42 0.00092 27.1 2.2 21 32-52 145-165 (246)
220 PF11080 DUF2622: Protein of u 29.7 99 0.0022 21.4 3.6 33 101-148 21-53 (96)
221 PF08445 FR47: FR47-like prote 28.9 1.4E+02 0.003 19.9 4.3 23 29-52 60-82 (86)
222 PRK00596 rpsJ 30S ribosomal pr 26.4 1.2E+02 0.0027 21.1 3.8 46 228-274 13-58 (102)
223 PTZ00330 acetyltransferase; Pr 25.8 1E+02 0.0022 22.4 3.6 27 23-52 115-141 (147)
224 TIGR01049 rpsJ_bact ribosomal 25.0 1.2E+02 0.0026 21.0 3.5 46 228-274 10-55 (99)
225 cd04897 ACT_ACR_3 ACT domain-c 24.9 2.1E+02 0.0045 18.7 5.1 52 226-277 4-56 (75)
226 TIGR03268 methan_mark_3 putati 24.9 1.9E+02 0.004 26.6 5.4 76 102-181 322-403 (503)
227 cd04908 ACT_Bt0572_1 N-termina 23.5 1.7E+02 0.0038 18.0 3.9 23 95-117 42-64 (66)
228 COG1791 Uncharacterized conser 23.2 1.8E+02 0.0039 22.6 4.3 80 101-181 78-162 (181)
229 PF02952 Fucose_iso_C: L-fucos 22.9 1.1E+02 0.0024 22.6 3.3 27 24-50 113-139 (142)
230 PF13176 TPR_7: Tetratricopept 22.1 74 0.0016 17.0 1.7 18 30-47 11-28 (36)
231 TIGR03884 sel_bind_Methan sele 22.0 1.5E+02 0.0033 19.3 3.2 26 227-252 21-46 (74)
232 TIGR00318 cyaB adenylyl cyclas 21.6 3.8E+02 0.0083 20.6 15.8 136 98-249 8-159 (174)
233 COG3603 Uncharacterized conser 21.4 1.1E+02 0.0024 22.1 2.7 24 95-118 104-127 (128)
234 cd06403 PB1_Par6 The PB1 domai 21.1 1.3E+02 0.0028 20.0 2.8 27 264-290 42-68 (80)
235 cd06402 PB1_p62 The PB1 domain 20.7 1.5E+02 0.0032 20.1 3.1 27 264-290 48-74 (87)
236 PF07494 Reg_prop: Two compone 20.7 1.2E+02 0.0027 14.6 2.5 14 130-143 7-20 (24)
237 PF10649 DUF2478: Protein of u 20.6 3.2E+02 0.0069 21.0 5.3 52 232-283 11-66 (159)
238 COG3603 Uncharacterized conser 20.4 1.1E+02 0.0023 22.2 2.4 25 224-252 103-127 (128)
239 PRK10562 putative acetyltransf 20.2 3.1E+02 0.0067 19.9 5.3 22 32-54 106-127 (145)
240 PF00583 Acetyltransf_1: Acety 20.2 91 0.002 19.8 2.1 25 23-48 58-83 (83)
241 PF14527 LAGLIDADG_WhiA: WhiA 20.2 2.5E+02 0.0054 19.2 4.3 44 224-272 22-65 (93)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=7.9e-44 Score=300.80 Aligned_cols=283 Identities=80% Similarity=1.316 Sum_probs=229.2
Q ss_pred CCCCccccchhccCCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeecc
Q 022851 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (291)
|.+|-+.+.+...+++++.+.++.|++|.|+|++++.+||+++|||++..+...+...+...++..++...++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 45666777888889998999999999999999999999999999999987655545555566776655445566666654
Q ss_pred CCCCcccCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCCCceeEEeee
Q 022851 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
.+...+..+.|+.|++|.|+|+++++++|.++|+++...|...+++...+++|+||+|++|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 44444445668899999999999999999999999888777766655556889999999999999988889999999999
Q ss_pred CCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhhHHHHH
Q 022851 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~~l~ 241 (291)
+|++++.+||+++|||++......++..+.+.++..+.......+++..+.+...+..+++.+|++|.|+|++++++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999987655444555777666543322234567655443333345688999999999999999999
Q ss_pred HHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhhhhh
Q 022851 242 LVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 288 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~ 288 (291)
+++|++++.+|...|+.+++.++|+||+|+.|+|+++..+.|++
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~ 285 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKEL 285 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhc
Confidence 99999999999888865558999999999999999999998875
No 2
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=1.9e-31 Score=227.02 Aligned_cols=237 Identities=23% Similarity=0.271 Sum_probs=165.3
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
+|.+++||.|.|+|++++.+||+++|||++..+.. ...++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999876532 123443211111122222211 22478899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC---------------CCCCceeEEeee
Q 022851 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~---------------~~~~~~hv~l~v 161 (291)
|+ |+++++++|+++|+++...+. +.+. ..++|+||+|+.+||+.... .+.++.|++|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQP-EALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCCc-eEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 789999999999999876432 2222 45899999999999987431 235689999999
Q ss_pred CCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhhHHHHH
Q 022851 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~~l~ 241 (291)
.|++++.+||+++|||++......+.+.....++.... .++.+.+.. ..+++++|+||.|+|.++. ..+.
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v-~~~~ 214 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPLNI-IKAC 214 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHHHH-HHHH
Confidence 99999999999999999876543333333334443222 123344321 1246889999999995443 3334
Q ss_pred HHHHHhCCe--eecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 242 LVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 242 ~~~~~~G~~--~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++|+++|++ +...|..+..++.+++|++||+|++|||+...
T Consensus 215 ~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 215 DILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 555999997 66677665543457899999999999998744
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=1.9e-31 Score=227.76 Aligned_cols=238 Identities=21% Similarity=0.240 Sum_probs=162.7
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++|+.|.|+|++++.+||+++|||++..+... .+++..........+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 67899999999999999999999999998765421 23333211111222222211 234789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC---------------------CCCcee
Q 022851 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~---------------------~~~~~h 156 (291)
+ |+++++++|+++|+.+...+.....+....++|+||+|+.|||...... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7889999999999998765432111222348899999999999985431 235899
Q ss_pred EEeeeCCchhhHHHHHHhhCCeeeeecccCCcce-eEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhh
Q 022851 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
|+|.|+|++++.+||+++|||++..+...+++.. ...++..... ...+.+.. . +..+.+.|+||.|+|+++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~----~~~g~~~Hiaf~v~~~~~ 220 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVG--D----PEPGKLHHVSFFLDSWED 220 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--Ccccceec--C----CCCCceEEEEEEcCCHHH
Confidence 9999999999999999999999876543333221 2333432221 22232221 0 112248999999998443
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.. ++.++|+++|+++..+|..++...++.+||+||+|++|||+.
T Consensus 221 v~-~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 221 VL-KAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HH-HHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 32 223444999999988887665433589999999999999983
No 4
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-31 Score=205.18 Aligned_cols=259 Identities=50% Similarity=0.854 Sum_probs=216.1
Q ss_pred ccCCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCC-----------CceeEEEeecCCCCceeEEEeecc
Q 022851 13 LLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 13 ~~~~~~~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~g~~~~~~~~~~~~~ 81 (291)
...+++.+-.+..|+.+.|.|..++++||+++||+++....+.+. +.|.-.++++|+...+++++++.+
T Consensus 7 ~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYN 86 (299)
T KOG2943|consen 7 LLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYN 86 (299)
T ss_pred hhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEec
Confidence 446777788999999999999999999999999999998777766 688889999999999999999999
Q ss_pred CCCCcccCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCCCceeEEeee
Q 022851 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
+++..|..|.++-|+.+.++|+-...+.+...|.+ . ++...+++.||||+.|++.+..+.+.++..|.|+|
T Consensus 87 YgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~-~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~V 157 (299)
T KOG2943|consen 87 YGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK--------G-SGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNV 157 (299)
T ss_pred cCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------c-cceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEe
Confidence 99999999999999999999988777777665542 1 22334889999999999999888999999999999
Q ss_pred CCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhhHHHHH
Q 022851 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~~l~ 241 (291)
.|+++++.||.+.|||++.+. +..++..+++++++ ...|||+.+.+......+.+...+++..+++..+.+.+
T Consensus 158 gdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i- 230 (299)
T KOG2943|consen 158 GDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI- 230 (299)
T ss_pred hhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH-
Confidence 999999999999999998764 33466777787665 58999999888877667777777777788888888888
Q ss_pred HHHHHhCCeeecCCcc--cCCCC-ceEEEEECCCCCeEEEeechhhhhhhhc
Q 022851 242 LVTQELGGKITRQPGS--IPGLN-TKITSFVDPDGWKTVLVDNEDFLKEIQS 290 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~--~~~~~-~~~~~~~Dp~G~~iel~~~~~~~~~~~~ 290 (291)
+..+.++..+..+ .|+.. ..++-+-||||+.|.|+....+.+...+
T Consensus 231 ---K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk~ 279 (299)
T KOG2943|consen 231 ---KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSKI 279 (299)
T ss_pred ---HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhcc
Confidence 8887777766554 33322 2556789999999999999988876554
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=2.4e-30 Score=219.11 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=164.7
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
|.++.|++|.|+|++++.+||+++|||+...+.. .+ ..++..+.....+ .+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~~~~~--~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSRAHRI--AVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCCceEE--EEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999999765422 11 2344554322222 222211 13678999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEeCCCC------------------CCCceeE
Q 022851 101 ED---VYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRGPT------------------PEPLCQV 157 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~~~~~------------------~~~~~hv 157 (291)
+| ++++.++|+++|+++...+... ..+....++|.||+||.+||+..... +.++.||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 88 8889999999999987654311 12233458999999999999974321 2268899
Q ss_pred EeeeCCchhhHHHHHHhhCCeeeeecccCC--c-ceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchh
Q 022851 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPE--Y-KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.|.|+|++++.+||+++|||++........ + .+...++...+. ++.+.+.. . +..++++|++|.|+|++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~-~-----~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAA-G-----PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEec-C-----CCCCceEEEEEEcCCHH
Confidence 999999999999999999999876542211 1 123445543222 33444432 1 12458899999999865
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+ +.++.++|+++|+ ....|.+++.++.+++|++||+|++|||...
T Consensus 219 ~-v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 219 D-VGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred H-HHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 5 2333344499999 5667777665556889999999999999864
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.92 E-value=6.6e-23 Score=178.03 Aligned_cols=224 Identities=22% Similarity=0.368 Sum_probs=153.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCC--CCcc--cCCCCeeEEE
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG--VTSY--DIGTGFGHFA 97 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~--~~~~g~~~i~ 97 (291)
.+++||.+.|+|++++++||++.|||+.........+. ....+..| +..+.+....... ...+ ..|+|++|+|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G--~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ia 77 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG--QINFVLTAPYSSDSPAADFAAKHGDGVKDVA 77 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC--CEEEEEecCCCCCchHHHHHHhCCCceEEEE
Confidence 36899999999999999999999999998763222221 22333333 3333333221111 1111 2678999999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC-------------------------CC
Q 022851 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT-------------------------PE 152 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~-------------------------~~ 152 (291)
|.|+|++++++++.++|+.+..+|.....|...+..++.++|..+.|++.... ..
T Consensus 78 f~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (353)
T TIGR01263 78 FRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGLI 157 (353)
T ss_pred EEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCeE
Confidence 99999999999999999998877654411233334456677777776663210 12
Q ss_pred CceeEEeeeC--CchhhHHHHHHhhCCeeeeecccCC--cce-eEEEecccCCCceeEEEEeeecCc---c------eee
Q 022851 153 PLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKY-TLAMLGYAEEDQTTVLELTYNYGV---T------EYT 218 (291)
Q Consensus 153 ~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~l~~~~~~---~------~~~ 218 (291)
.++||++.|. |++++.+||+++|||++........ ... +.++.. ..+...++|..+... . ..+
T Consensus 158 ~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~---~~g~~~i~L~ep~~~~~~s~i~~fl~~~ 234 (353)
T TIGR01263 158 AIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS---PDGKVKIPLNEPASGKDKSQIEEFLEFY 234 (353)
T ss_pred EeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC---CCCcEEEEEeccCCCCCCCHHHHHHHHc
Confidence 4899999999 9999999999999999876544321 111 222222 122466777653211 1 123
Q ss_pred cCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCC
Q 022851 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 219 ~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p 255 (291)
.|+|++|+||.|+|+++++++| +++|++++.+|
T Consensus 235 ~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 235 NGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred CCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 4789999999999999999999 99999998877
No 7
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.88 E-value=8.9e-21 Score=163.23 Aligned_cols=224 Identities=17% Similarity=0.252 Sum_probs=160.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCC--ceeEEEeecCCCCceeEEEeeccCC------------------
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYG------------------ 83 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~------------------ 83 (291)
++||.+.|.|...+..||+..|||+.+.......+ ......++ +++..+++.-.....
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r--~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR--SGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFS 78 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE--eCCEEEEEeCCCCCccccccccccccccccccC
Confidence 68999999999999999999999999887653222 22233333 345555543331110
Q ss_pred ---CCcc--cCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCC----CceEEEEEECCCCCEEEEEeCCC-----
Q 022851 84 ---VTSY--DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKG----GTTHIAFVKDPDGYIFELIQRGP----- 149 (291)
Q Consensus 84 ---~~~~--~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~----g~~~~~~~~dp~G~~iel~~~~~----- 149 (291)
...+ .+|++++.|+|+|+|++++++++.++|++....|....+ |...+..++.++|..+.|+++..
T Consensus 79 ~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~~~ 158 (398)
T PLN02875 79 SDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGAK 158 (398)
T ss_pred cHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCCCc
Confidence 0111 277899999999999999999999999998877665432 23445667888898888887531
Q ss_pred ----------C--------CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCc-----ceeEEEecccCCCceeEE
Q 022851 150 ----------T--------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-----KYTLAMLGYAEEDQTTVL 206 (291)
Q Consensus 150 ----------~--------~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l 206 (291)
. ...|+||++.|.+++++..||+++|||+..+.....+. +.....+.. .+....+
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~s--p~g~v~i 236 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLAS--NNEMVLL 236 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEc--CCCcEEE
Confidence 0 12589999999999999999999999998765443222 134444442 2235677
Q ss_pred EEeeecCc---ce-------eecCcceeEEEEEecchhhhHHHHHHHHHHh----CCeeecCC
Q 022851 207 ELTYNYGV---TE-------YTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 255 (291)
Q Consensus 207 ~l~~~~~~---~~-------~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~----G~~~~~~p 255 (291)
+|..+... .+ ...|+|++||||.|+||.+++++| +++ |++++..|
T Consensus 237 pLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 237 PLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 77665321 11 235789999999999999999999 888 99999865
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=2.6e-20 Score=142.65 Aligned_cols=137 Identities=45% Similarity=0.786 Sum_probs=105.0
Q ss_pred CCCCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEE
Q 022851 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (291)
....++.|+.|.|.|++++.+||+++|||++......++..+.++++..+.......+++..+.+......+++..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 45678999999999999999999999999987654444444556666543332344566644333222233458899999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhhhhhh
Q 022851 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEIQ 289 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~~ 289 (291)
.|+|++++.+++ .++|++++.+|...+..+.+.+||+||+|++|||++.....+.||
T Consensus 93 ~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 149 (150)
T TIGR00068 93 GVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLG 149 (150)
T ss_pred ecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhcc
Confidence 999999999999 999999988876555544578899999999999999999888887
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.85 E-value=1.9e-20 Score=149.16 Aligned_cols=132 Identities=33% Similarity=0.591 Sum_probs=107.4
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCC---------------CceeEEEEeeecCcc
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNYGVT 215 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~ 215 (291)
...+.|+.|.|.|++++++||+++|||++..+...++.+++++++..++. .....|||+.+++..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 45689999999999999999999999999888887877889999864321 113589998877654
Q ss_pred e------eecC----cceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhh
Q 022851 216 E------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 216 ~------~~~~----~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
. +..+ .|+.|++|.|+|++++++++ +++|++++..|...++ .+++|++||||++|||+|.....
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 1 3333 38999999999999999999 9999999988765443 47899999999999999988765
Q ss_pred hhh
Q 022851 286 KEI 288 (291)
Q Consensus 286 ~~~ 288 (291)
+-.
T Consensus 227 ~~~ 229 (233)
T PLN02367 227 TTT 229 (233)
T ss_pred ccc
Confidence 443
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=2.3e-19 Score=137.37 Aligned_cols=137 Identities=64% Similarity=1.078 Sum_probs=103.6
Q ss_pred ccCCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCC
Q 022851 13 LLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG 92 (291)
Q Consensus 13 ~~~~~~~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 92 (291)
.+..++...++++|+.|.|+|++++.+||+++|||++..+...+...+..++++.++......+.+.......+...+.+
T Consensus 7 ~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g 86 (150)
T TIGR00068 7 LVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNG 86 (150)
T ss_pred cccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCc
Confidence 34556678999999999999999999999999999987765544444455666654433344455543332223334558
Q ss_pred eeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 93 FGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 93 ~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+.|++|.|+|+++++++|.++|+++...+...+.+....+||+||+|++|||++...
T Consensus 87 ~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 87 FGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 899999999999999999999999887775555554455789999999999999764
No 11
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.84 E-value=7.7e-19 Score=140.13 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=133.6
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
..+.+..+.|.|+|++.+..||+++||+++..+... ...++.++. ..+.++-.+.. ..+.....|+.|++|.
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~-~LL~L~q~~~a-~~~~~~~aGLyH~AfL 78 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT-PLLTLEQFPDA-RRPPPRAAGLYHTAFL 78 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE-EEEEEEeCCCC-CCCCccccceeeeeee
Confidence 457889999999999999999999999999888653 355666543 33444433322 2233456699999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC--------------------------
Q 022851 100 TED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT-------------------------- 150 (291)
Q Consensus 100 v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~-------------------------- 150 (291)
+++ +..+..++.+.|..+... .+..- ...+||.||+||-||++..++.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~Ga-~DH~v--SEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~ 155 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLVGA-SDHLV--SEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEA 155 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCccccc-Ccchh--heeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhc
Confidence 975 777888999999887522 23322 2358999999999999998641
Q ss_pred ----------CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEE-eeecCccee--
Q 022851 151 ----------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLEL-TYNYGVTEY-- 217 (291)
Q Consensus 151 ----------~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-~~~~~~~~~-- 217 (291)
...|.||.|.|.|++++.+||.++|||.+..+. ....|+..+.- ++.+.. +++......
T Consensus 156 ~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~------~~A~F~a~G~Y--HHHia~N~W~s~~~~~~~ 227 (265)
T COG2514 156 TKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARG------PSALFLASGDY--HHHLAANTWNSRGARPRN 227 (265)
T ss_pred cccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecC------CcceEEecCCc--ceeEEEeccccCCCCCCC
Confidence 124899999999999999999999999987652 13455664443 444433 121111111
Q ss_pred ecCcceeEEEEEecc
Q 022851 218 TKGNAYAQVAISTDD 232 (291)
Q Consensus 218 ~~~~~~~h~~~~v~d 232 (291)
..-.|+..+.+.+++
T Consensus 228 ~~~~GLa~~~i~~~~ 242 (265)
T COG2514 228 ANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCcceEEEEcCC
Confidence 122366677777776
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=5.5e-19 Score=131.80 Aligned_cols=125 Identities=56% Similarity=0.999 Sum_probs=94.7
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHHH
Q 022851 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~ 107 (291)
+|.|+|++++.+||+++|||++..+...+...+..+++..++......+++.......++..+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999988776555555667777665433334455544333334445668999999999999999
Q ss_pred HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCC
Q 022851 108 ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPE 152 (291)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~ 152 (291)
++|+++|+++...+...+++....++|+||+|++|||++....+.
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~ 125 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 125 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccccc
Confidence 999999999887665555555555788999999999999875443
No 13
>PLN02367 lactoylglutathione lyase
Probab=99.82 E-value=1.5e-18 Score=138.33 Aligned_cols=129 Identities=36% Similarity=0.665 Sum_probs=102.2
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCC---------------ceeEEEeeccCC
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNYG 83 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~---------------~~~~~~~~~~~~ 83 (291)
..=-.+.|++|.|+|++++++||+++|||++..+.+.++.++..++++.++.. ....+++.++.+
T Consensus 71 t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g 150 (233)
T PLN02367 71 TKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWG 150 (233)
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCC
Confidence 34567899999999999999999999999999998888888888888653210 123677776544
Q ss_pred CC------cccCC----CCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 84 VT------SYDIG----TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 84 ~~------~~~~~----~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
.. .+..+ .|+.||||.|+|+++++++|+++|+++...|....+ ...++++||||++|||++...
T Consensus 151 ~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 151 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 32 13333 489999999999999999999999999877765443 335889999999999999763
No 14
>PRK10291 glyoxalase I; Provisional
Probab=99.82 E-value=2.8e-19 Score=133.37 Aligned_cols=122 Identities=50% Similarity=0.902 Sum_probs=92.4
Q ss_pred EeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhhH
Q 022851 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~ 237 (291)
.|.|.|++++.+||+++|||++......++..+.+.++..++......+++..+.+......++++.|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987665555555677777654333344566654333222334568899999999999999
Q ss_pred HHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 238 EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 238 ~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+++ ++.|+++..++...++++.+.+||+||||++|||++.+.
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999 999999887766555533467889999999999999764
No 15
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=146.52 Aligned_cols=231 Identities=21% Similarity=0.328 Sum_probs=161.2
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCC-----CCcccCCCCee
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-----VTSYDIGTGFG 94 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~g~~ 94 (291)
.+.+++||.+.|.|...+++||+..|||++....+.+.+........+.++...+++.-..+.. ..-..+|.|+.
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 4899999999999999999999999999998866544332222222222334444433221111 11224778899
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCeecCC--CceEEEEEECCCCCEEEEEeCCCC----------------------
Q 022851 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQRGPT---------------------- 150 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~~~~~~---------------------- 150 (291)
.+||+|+|++++.+.+.++|+++..+|.+..+ |..+++.+..+.-....+++...-
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~~ 173 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLPK 173 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCCc
Confidence 99999999999999999999999988776654 556678888887666666665521
Q ss_pred --CCCceeEEeeeC--CchhhHHHHHHhhCCeeeeecccCCcc-----eeEEEecccCCCceeEEEEeeecCcc------
Q 022851 151 --PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYK-----YTLAMLGYAEEDQTTVLELTYNYGVT------ 215 (291)
Q Consensus 151 --~~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~l~~~~~~~------ 215 (291)
...++|+..+++ .++.+.+||.++|||...+.++...-+ .+.+.+. +......+.+..+.+..
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~ksQI 251 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKKSQI 251 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccHHHH
Confidence 135899999999 588999999999999988776543211 1111222 11112222222221111
Q ss_pred ----eeecCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCc
Q 022851 216 ----EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 216 ----~~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.++.|+|++|+++.++||-.+++.+ +++|.+++.+|.
T Consensus 252 qeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps 292 (381)
T KOG0638|consen 252 QEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPS 292 (381)
T ss_pred HHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCH
Confidence 1568889999999999999999999 999999998884
No 16
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=5.5e-18 Score=132.59 Aligned_cols=146 Identities=34% Similarity=0.570 Sum_probs=103.6
Q ss_pred CCCCCccccchhcc----CCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCC-----
Q 022851 1 MAEASPAAANAELL----EWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ----- 71 (291)
Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~----- 71 (291)
||.+|-..++++.- +..++.=.++.|++|.|.|++++++||+++|||++..+...++..+..++++.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~ 80 (185)
T PLN03042 1 MASASKESAANNPGLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTD 80 (185)
T ss_pred CCCCCcCCcccCcccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcc
Confidence 55555544444221 122234578999999999999999999999999998887766666777777643210
Q ss_pred ----------ceeEEEeeccCCCCc------cc----CCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEE
Q 022851 72 ----------SHFVVELTYNYGVTS------YD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHI 131 (291)
Q Consensus 72 ----------~~~~~~~~~~~~~~~------~~----~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~ 131 (291)
....+++..+....+ +. .+.|+.|++|.|+|+++++++|+++|+.+...|....+ ..+
T Consensus 81 ~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~ 158 (185)
T PLN03042 81 PPERTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGL 158 (185)
T ss_pred hhhcccccccCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeE
Confidence 123566664432211 22 22489999999999999999999999998866543322 345
Q ss_pred EEEECCCCCEEEEEeCC
Q 022851 132 AFVKDPDGYIFELIQRG 148 (291)
Q Consensus 132 ~~~~dp~G~~iel~~~~ 148 (291)
++++||+|++|||++..
T Consensus 159 ~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 159 AFIKDPDGYWIEIFDLK 175 (185)
T ss_pred EEEECCCCCEEEEEECC
Confidence 78899999999999975
No 17
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=9.1e-19 Score=136.98 Aligned_cols=129 Identities=32% Similarity=0.591 Sum_probs=99.8
Q ss_pred CCCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCC---------------CceeEEEEeeecCc
Q 022851 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNYGV 214 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~ 214 (291)
...++.|+.|.|.|++++++||+++|||++..+...++..++++++..+.. .....|+|+.+.+.
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 346799999999999999999999999998877666666678888764221 02357899875442
Q ss_pred ce------ee----cCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 215 TE------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 215 ~~------~~----~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
.. +. .+.++.|++|.|+|++++++++ ++.|+++...|....+ .+++|++||||++|||++.+.+
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 21 11 1248999999999999999999 9999999877654322 4678999999999999997764
No 18
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.79 E-value=1.8e-18 Score=130.20 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=92.5
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce------eecCcceeEEE
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~~ 227 (291)
++|++|.|.|++++.+||+++|||++.......+ ....++. . ....+.+....+... ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~--~--g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLR--Q--GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEE--c--CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999876543322 2333343 1 134566644322111 12456889999
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhhh
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~ 286 (291)
|.|+|++++++++ +++|++++.+|...++ +.+.++++||+|++|||+|++...+
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~ 128 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKG 128 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCC
Confidence 9999999999999 9999999999887555 5689999999999999999877543
No 19
>PRK11478 putative lyase; Provisional
Probab=99.79 E-value=6.7e-18 Score=125.83 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=83.7
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCC-CceeEEEeecCCCCceeEEEeecc---CCCCcccCCCCee
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-EKYSNAFLGFGPEQSHFVVELTYN---YGVTSYDIGTGFG 94 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~g~~ 94 (291)
+.+++++||+|.|+|++++.+||+++|||++..+...+. ..+. ..+..++ .. .+++... ..........|+.
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~-~~--~l~l~~~~~~~~~~~~~~~~g~~ 77 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNG-QY--VIELFSFPFPPERPSRPEACGLR 77 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCC-Cc--EEEEEEecCCCCCCCCCCCCcee
Confidence 357899999999999999999999999999865422211 1111 1222222 22 2333321 1111112334789
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|++|.|+|+++++++|+++|+++...+....+|. .+++|+||+|+.|||++
T Consensus 78 hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 78 HLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEe
Confidence 9999999999999999999999765433333444 45889999999999987
No 20
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=7.9e-18 Score=127.66 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=87.4
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCC-----------CceeEEEeecCCCCceeEEEeecc---CCC-C
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYN---YGV-T 85 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~g~~~~~~~~~~~~~---~~~-~ 85 (291)
+++++||+|.|+|++++.+||++ |||++..+...++ ......++...++. ..+++... ... .
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~--~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGH--SRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCC--ceEEEEEecCCCCcCc
Confidence 57899999999999999999998 9998876543221 12233444432222 23343321 111 1
Q ss_pred ---cccCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 86 ---SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ---~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
....+.|+.|+||.|+|+++++++|+++|+++..++....++. +.++++||+|+.|||++.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~-r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSY-RLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCe-EEEEEECCCCCEEEeeec
Confidence 1123458899999999999999999999999888666555544 458999999999999984
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.79 E-value=5.6e-18 Score=124.74 Aligned_cols=120 Identities=47% Similarity=0.812 Sum_probs=91.2
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCc-ceeecCcceeEEEEEecc
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~~~v~d 232 (291)
+.|+.|.|+|++++.+||+++|||++.......+....++++..+.......+++....+. .....+++..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876554444345556666433113456666554332 122334578999999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++++++++ +++|+++..+|... + +++.+||+||+|++|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 99999999 99999999888765 2 358899999999999985
No 22
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=3.6e-18 Score=129.52 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=90.3
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccC-----------CcceeEEEecccCCCceeEEEEeeecCcce----
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-----------EYKYTLAMLGYAEEDQTTVLELTYNYGVTE---- 216 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 216 (291)
.+++||+|.|.|++++.+||++ |||++....... .....+.++..+ ..+..++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcC
Confidence 4689999999999999999998 999876543211 122344555432 2356788876432211
Q ss_pred ---eecCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 217 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ---~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
...+.++.|+||.|+|++++++++ +++|+++..+|...++ +.+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 123457889999999999999999 9999998876655444 45889999999999999984
No 23
>PLN02300 lactoylglutathione lyase
Probab=99.78 E-value=3.9e-18 Score=144.25 Aligned_cols=133 Identities=47% Similarity=0.781 Sum_probs=102.2
Q ss_pred CCCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEE
Q 022851 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
...++.|++|.|+|++++.+||+++|||++..+...++..+...++..+++..+..+++....+......++++.|++|.
T Consensus 21 ~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~ 100 (286)
T PLN02300 21 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIA 100 (286)
T ss_pred ccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEE
Confidence 45789999999999999999999999999876554444445555665444334556777654333223345688999999
Q ss_pred ecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhhh
Q 022851 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~ 286 (291)
|+|++++.+++ +++|+++...|...++++.+.+||+||+|++|||+++.+..+
T Consensus 101 v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~ 153 (286)
T PLN02300 101 VEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPE 153 (286)
T ss_pred eCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCC
Confidence 99999999999 999999988887766644578899999999999999865443
No 24
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=1.8e-17 Score=122.04 Aligned_cols=120 Identities=53% Similarity=0.944 Sum_probs=88.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCC-CcccCCCCeeEEEEEeCC
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIATED 102 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~v~d 102 (291)
+.|++|.|+|++++.+||+++|||++..+...+++....+++..++......+.+...... .+...+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999987755544445566666543101223344332221 223344578999999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
++++++++.++|+++...|... ++. .+++|+||+|+++||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~~~-~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-GMK-GIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-CCc-eEEEEECCCCCEEEeC
Confidence 9999999999999998877655 333 4588999999999985
No 25
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2.5e-17 Score=120.90 Aligned_cols=115 Identities=45% Similarity=0.825 Sum_probs=86.6
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCC-----------CceeEEEeecCCCCceeEEEeeccCCCCcccCC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIG 90 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 90 (291)
.++.|++|.|+|++++++||+++|||++..+...++ +.+...++.+++....+.+++..+.+..++..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999887765554 334445565543345667888876665555555
Q ss_pred CCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 91 TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 91 ~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
.+ |++|.|++. ++.++|+++|+.+...+. + +++++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 566666666 556999999998876543 2 5889999999999974
No 26
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.9e-17 Score=121.40 Aligned_cols=124 Identities=26% Similarity=0.317 Sum_probs=85.0
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCC-cccCCCCeeEEEEE
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-SYDIGTGFGHFAIA 99 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~i~~~ 99 (291)
+.+++||+|.|.|++++.+||+++|||++......++.......+... ....+.+-........ ....+.|++|++|.
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~ 79 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GGYQLELFSFPNPPERPSYPEACGLRHLAFS 79 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CCcEEEEEEcCCCCCCCCCCcCCCceEEEEE
Confidence 368999999999999999999999999987654322221112223321 2222222211111111 11234588999999
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|+|+++++++|+++|+++...+....++.. +++++||+|++|||++
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 80 VEDIEAAVKHLKAKGVEVEPIRVDEFTGKR-FTFFYDPDGLPLELYE 125 (125)
T ss_pred eCCHHHHHHHHHHcCCccccccccCCCceE-EEEEECCCCCEEEecC
Confidence 999999999999999998776554444443 5889999999999975
No 27
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=3.9e-17 Score=120.81 Aligned_cols=119 Identities=27% Similarity=0.419 Sum_probs=84.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCc---ccCCCCeeEEEEE
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~i~~~ 99 (291)
+++||+|.|+|++++++||+++|||+...+...+..+....++.+++ . ..+++.......+ .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD-G--ARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC-C--cEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865543333333445665542 2 2234432211111 1233478999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
|+ |+++++++|+++|+++...|...+.|.+. ++++||+|+.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEeC
Confidence 95 58999999999999988777655555444 67999999999973
No 28
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.76 E-value=3.3e-17 Score=123.29 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=88.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCC-CC---c--ccCCCCeeEEE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-VT---S--YDIGTGFGHFA 97 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~---~--~~~~~g~~~i~ 97 (291)
|+|++|.|+|++++.+||+++|||++..+...+ .....++.. +... +.+..... .. . ...+.++.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~--g~~~--l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ--GDIN--FVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc--CCEE--EEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999988765432 122333432 2322 33332211 11 1 12456889999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022851 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
|.|+|+++++++|+++|+++..+|...+++. +.++++||+|++|+|++.+..
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~-~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGEL-KIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeE-EEEEEeccCCcEEEEEecCCC
Confidence 9999999999999999999998888766544 458899999999999998754
No 29
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=7.5e-18 Score=129.24 Aligned_cols=123 Identities=19% Similarity=0.178 Sum_probs=86.5
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccC-CcceeEEEecccCCC---ceeEEEEeeecCcceeecCcceeEEEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEED---QTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (291)
++.||+|.|+|++++.+||+++||+++......+ +......++..+... ....+.+.. ..++++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999987654332 222345555532210 011122211 11468999999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
.|+|++++.+. .++|++.|+++...|+++..+...++|++||+|++|||.....
T Consensus 74 ~v~die~~~~~-~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 74 EVHDFDAQGLG-HDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred EcCCHHHHHHH-HHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 99998887622 2333999999988888776544567899999999999997654
No 30
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=2.9e-17 Score=123.29 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=89.4
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
+.++.|+.|.|.|++++.+||+++|||++..... . ...++.......+..+.+..... ..+++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 4678999999999999999999999999765432 1 22344432222345555543211 136899999999
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhh
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
+|+++..+ +.++|+++|+++...|.+.+..+.+++||+||+|++|||.......
T Consensus 71 ~d~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~ 124 (134)
T cd08360 71 GDIDEVML-GGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYV 124 (134)
T ss_pred CCHHHHHH-HHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccccc
Confidence 99776654 2344499999988778777665557799999999999999765543
No 31
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=3.1e-17 Score=124.27 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcce-eEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEE
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
..++.||+|.|+|++++.+||+++|||++..+...+++.. ...++..... .+.+.+.. . .++++.|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~--~-----~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG--G-----PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec--C-----CCCCceEEEEE
Confidence 4578999999999999999999999999766543222211 2233432222 33343321 1 13578999999
Q ss_pred ecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|+|+++..+ +.++|+++|+++...|.++..++++.+||+||+||+|||.+.
T Consensus 75 v~d~~~l~~-~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLK-AGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHH-HHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999776433 335559999998877776553345889999999999999864
No 32
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=5.2e-17 Score=119.18 Aligned_cols=114 Identities=32% Similarity=0.580 Sum_probs=83.6
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCC-----------cceeEEEecccCCCceeEEEEeeecCcceeecCc
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN 221 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (291)
++.|++|.|+|+++|++||+++|||++..+...++ +.+.++++...++..+..++|+.+++..++..|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999877654443 3334444543333346789998877655555555
Q ss_pred ceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 222 ~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+ |++|.|+++ ++.+++ ++.|+++...|. .+++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666665 455777 999998876543 28899999999999974
No 33
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.75 E-value=3.7e-17 Score=126.51 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=87.4
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeec----cc--------------CCcceeEEEecccCCCceeEEEEeeecC
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTV----DK--------------PEYKYTLAMLGYAEEDQTTVLELTYNYG 213 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 213 (291)
..++||+|.|.|++++.+||+++|||++..+. .. ....+.+.++..++ +..++|....+
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 46899999999999999999999999864211 00 11124455555332 34577876543
Q ss_pred ccee-----ecCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCccc--CC-CCceEEEEECCCCCeEEEeechh
Q 022851 214 VTEY-----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSI--PG-LNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 214 ~~~~-----~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~--~~-~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+... ..+.+..|++|.|+|++++++++ +++|+++...+... ++ .+.+.+|++||||+.|||+++..
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 2211 12468999999999999999999 99998764433111 11 11278999999999999999765
No 34
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=1.2e-16 Score=120.66 Aligned_cols=118 Identities=21% Similarity=0.373 Sum_probs=86.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
|+++++|+.|.|+|++++.+||+++|||++..+.. ...++..++ . .+.+...........+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g--~--~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG--L--WIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC--e--EEEeeccCCCCCccCCCCeeEEEEE
Confidence 57899999999999999999999999999876532 234555432 2 2223222111112233467899999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 100 TE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++ |+++++++|+++|+++...+...+++.. .++++||+|++|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~-~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKK-SIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCce-EEEEECCCCCEEEEEeCC
Confidence 87 9999999999999998766555554444 488999999999999876
No 35
>PRK11478 putative lyase; Provisional
Probab=99.74 E-value=5.1e-17 Score=121.06 Aligned_cols=120 Identities=22% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCC-cceeEEEecccCCCceeEEEEeeecCcce---eecCcceeEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~~ 227 (291)
.++.||+|.|+|++++.+||+++|||++.......+ ..+... +... .+..+++.....+.. .....++.|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999764321111 111111 1111 135666654221111 12234788999
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
|.|+|++++++++ +++|+++...+. .+..+.+++||+||+|+.|||+|
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRV-DPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeecccc-CCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999 999999764332 23234588999999999999987
No 36
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.74 E-value=1.5e-16 Score=123.09 Aligned_cols=126 Identities=30% Similarity=0.369 Sum_probs=84.7
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeee----ec--------------CCCceeEEEeecCCCCceeEEEeeccC
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR----DV--------------PEEKYSNAFLGFGPEQSHFVVELTYNY 82 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (291)
.++++||+|.|+|++++++||+++|||++..+. .. ........++..++. . .+++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~--~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDR-I--GVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCC-C--cEEEEecc
Confidence 367999999999999999999999999886421 00 011234555554332 1 23343322
Q ss_pred CC----Ccc-cCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCC-eec-CC-CceEEEEEECCCCCEEEEEeCCC
Q 022851 83 GV----TSY-DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPL-KG-GTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 83 ~~----~~~-~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~-~~~-~~-g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
.. ..+ ..+.|+.|+||.|+|+++++++|+++|+++...+ ... ++ ....+++++||+|+.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 11 111 1246899999999999999999999998754322 211 11 12346899999999999999864
No 37
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.74 E-value=7.3e-17 Score=123.75 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=86.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecC-CCceeEEEeecCCCCcee---EEEeeccCCCCcccCCCCeeEEEE
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHF---VVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+|+||+|.|+|++++++||+++|||++..+...+ .......++..++..... .+.+.. ..+.+++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5799999999999999999999999987654432 122345666553321100 011110 11458999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 99 ATEDVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+|++++. ++|+++|+++...+.....+...++|++||+|++|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 99999999987665554444555689999999999999765
No 38
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.74 E-value=6.3e-17 Score=119.69 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=82.5
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce---eecCcceeEEEEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~~~~ 229 (291)
++.|++|.|.|++++.+||+++|||++......+..++...++..++ +..+++........ ....+++.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999754433222334444554332 34567754221111 1233578999999
Q ss_pred ecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 230 TDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
|+| ++++++++ +++|+++...|...+. +.+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 965 56666666 9999999877754443 335688999999999983
No 39
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.74 E-value=2.6e-16 Score=119.26 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=83.8
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCc-eeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
.+++|+|++|.|+|++++.+||+++|||++..+...+.+. ....|+..+. ..+. +.+... .+.+++|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~~h~-~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-KPHD-IAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-Ccce-EEEecC-------CCCCceEEEE
Confidence 4788999999999999999999999999987664322221 2234554332 2222 222211 1247899999
Q ss_pred EeCCHHH---HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 99 ATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 99 ~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
.|+|+++ +.++|.++|+++...|.....+...++||+||+|++|||...
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999877 568999999998765544332233458999999999999875
No 40
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.73 E-value=1.2e-16 Score=123.71 Aligned_cols=122 Identities=21% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
|+++.||+|.|.|++++.+||+++|||++.......++.....++.... ....+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 5689999999999999999999999999765433222322333443222 133344322 1245789999999
Q ss_pred cchhhhHHHHHHHHHHhCCe--eecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 231 DDVYKSAEVVNLVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~--~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+|.++ +..+.++|+++|+. +...|..+...+.+++|++||+|++|||++..
T Consensus 72 ~~~~~-v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHN-IIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHH-HHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 87333 33334444999986 33445444333347899999999999998644
No 41
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=1.1e-16 Score=120.75 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=83.7
Q ss_pred eeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchh
Q 022851 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.||.|.|+|++++.+||+++|||++..+... ...++....+..++.+.+.. ....+++|++|.|+|++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998765321 23444432222233443321 12458999999998844
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
.+.++.++|.++|+++...|..++..+.+.+|++||+|+.|||+....
T Consensus 69 -~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 -DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred -HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 334444555999999988888876555688999999999999987554
No 42
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.72 E-value=3.3e-16 Score=115.55 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=82.2
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++|+.|.|+|++++.+||+++|||++..... ++ .+++..........+.+... ...++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6899999999999999999999999999876532 11 23443321111222323211 234788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
. |+++++++|+++|+++...|.....+....++|+||+||+||+....
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 6 78999999999999987654333322223589999999999998764
No 43
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=4.3e-16 Score=116.90 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=84.4
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++++|++|.|+|++++.+||+++|||++..+... ...++..++...+..+.+..... ...|++|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 6899999999999999999999999998765421 23455543222223333332211 1358999999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|++++. ++|.++|+++...+...+.+...++||+||+|++|||....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 888766 59999999987655444444444589999999999999754
No 44
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=1.7e-16 Score=117.32 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=84.7
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc---eeecCcceeEEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT---EYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~h~~~ 228 (291)
.++.|++|.|.|++++.+||+++|||+........+.....+.+.... ...+++....... ....+.+..|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 368999999999999999999999999775432222111122222111 3445554322111 1123458899999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.|+|++++.+++ +++|+++...+....+ +.+.+|++||+|++|||+|
T Consensus 79 ~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHL----KAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHH----HHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 999999999999 9999998776544333 4578999999999999976
No 45
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.72 E-value=8e-17 Score=119.73 Aligned_cols=119 Identities=30% Similarity=0.517 Sum_probs=84.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCC-C---Ccc--cCCCCeeEE
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-V---TSY--DIGTGFGHF 96 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~---~~~--~~~~g~~~i 96 (291)
+++|+.|.|+|++++.+||+++|||+.......++.....+++..++. .+++..... . ..+ ..+.++.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNT----KVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCE----EEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 578999999999999999999999998765433333445555655432 233322111 1 111 124578899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CeecCCCceEEEEE--ECCCCCEEEEEe
Q 022851 97 AIATEDVYKLVENIRAKGGNVTRE-PGPLKGGTTHIAFV--KDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~dp~G~~iel~~ 146 (291)
||.|+|+++++++|.++|+++..+ |...++|.. ..++ +||+|+.||+++
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKP-VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCE-EEEecccccCcEEEEecC
Confidence 999999999999999999998764 555555544 3555 799999999975
No 46
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.71 E-value=1.9e-16 Score=121.58 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=88.2
Q ss_pred CCCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccC---CcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEE
Q 022851 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP---EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (291)
.++++.|+.|.|+|++++.+||+++|||++....... +....+.++..+. .+..+.+... ..++++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 4678999999999999999999999999976542221 1123455555322 2334444321 123578999
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+|.|+|+++. +.+.++|+++|+++..+|..++..+.+.+|++||+|++|||.....
T Consensus 78 af~V~d~~~l-~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDV-GRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHH-HHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 9999885532 2233444999999988887776555688999999999999987544
No 47
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.71 E-value=3.4e-16 Score=113.99 Aligned_cols=114 Identities=25% Similarity=0.267 Sum_probs=83.8
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecch
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di 233 (291)
+.|+.|.|+|++++.+||+++||+++..... .+..+ .++..++ ...+.+....+.. ...+...|++|.++|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999765443 12223 3333222 1233333222221 1234678999999999
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+++.+++ +++|++++.+|...++ +++.+|++||+|+.|+|+|
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999 9999999999887775 3589999999999999985
No 48
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.71 E-value=1.8e-16 Score=117.78 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=85.3
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce------eecCcceeEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~ 226 (291)
++.|+.|.|+|++++.+||+++|||++.......+......++..+ ...++|....+... ...+.++.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999976543323323455555532 24566654322111 0124578899
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecC-CcccCCCCceEEEE--ECCCCCeEEEee
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGSIPGLNTKITSF--VDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~-p~~~~~~~~~~~~~--~Dp~G~~iel~~ 280 (291)
+|.|+|++++.+++ +++|++++.+ |...++ |.+.+|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999 9999998764 444444 3456666 799999999975
No 49
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.70 E-value=2.8e-16 Score=115.89 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=80.6
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
..++.|+.|.|+|++++.+||+++|||++..... +. .+++... ....+..+.+.. ...++..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~~~~~~-~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RVYLKAW-DEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eEEEEcc-CCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3578999999999999999999999999765431 11 2222221 111233444422 1234688999999
Q ss_pred c---chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 231 D---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+ |++++.+++ +++|+++...|.......++.+||+||+||+|||.+..
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 566666666 99999987766443332347899999999999998764
No 50
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.70 E-value=1.7e-16 Score=117.64 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=82.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeec--CCCceeEEEeecCCCCceeEEEeeccCCCCcccC---CCCeeEEE
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV--PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI---GTGFGHFA 97 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~g~~~i~ 97 (291)
+|+||+|.|+|++++.+||+++|||++...... ........++..+.. .+.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999988662 222333444444333 33332222221111111 01344555
Q ss_pred EEe---CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022851 98 IAT---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+.+ +|+++++++|++.|+++...+.....+...++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 57888999999999999988877777666656799999999997
No 51
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.70 E-value=1.4e-15 Score=118.22 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=86.8
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+.+.+|+|++|.|+|++++.+||+++|||++..+.....+.....++...+.... +.+..... ....++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHD--VAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCcee--EEEecCCC----CCCCCceEEEE
Confidence 4589999999999999999999999999998766433322223345554322222 22222111 12236899999
Q ss_pred EeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|+++...|.....+...++|++||+|++|||....
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9985 5578899999999987666554433333588999999999999974
No 52
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.69 E-value=1.8e-15 Score=116.12 Aligned_cols=123 Identities=19% Similarity=0.307 Sum_probs=87.3
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecC---CCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeE
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
...++|+||+|.|+|++++.+||+++|||++..+.... +.....+++..++... .+.+... ..+.++.|
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~------~~~~g~~H 76 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEG------PGPKRIHH 76 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcC------CCCceeEE
Confidence 35678999999999999999999999999987653321 1123455555432221 1222211 12357999
Q ss_pred EEEEeCCHH---HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 96 FAIATEDVY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 96 i~~~v~d~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
++|.|+|++ +++++|+++|+++...+...+.+....+|++||+|+.|||.....
T Consensus 77 iaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 77 LMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 999998755 689999999999887665555444455899999999999987753
No 53
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=1.4e-15 Score=112.40 Aligned_cols=118 Identities=30% Similarity=0.509 Sum_probs=83.6
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCC---CCcccCCCCeeEEE
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGHFA 97 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~g~~~i~ 97 (291)
|++++|+.|.|+|++++.+||+++|||+.....+... ..++..++ . .+.+..... ......+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~----~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVG----RKALRFGS--Q--KINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccCC----ceEEEeCC--E--EEEEecCCCccCcCccCCCCCCceEE
Confidence 5789999999999999999999999999876543211 23344333 2 233332111 11222456889999
Q ss_pred EEeCC-HHHHHHHHHHcCCeeecCCeecCC--CceEEEEEECCCCCEEEEEe
Q 022851 98 IATED-VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d-~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~~ 146 (291)
|.+.+ +++++++|.++|+++...|....+ +....++|+||+|+++|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998776654322 22235899999999999976
No 54
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=1.4e-15 Score=111.84 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=80.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEee--ccCCCCcccCCCCeeEEEEE
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELT--YNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~g~~~i~~~ 99 (291)
+++.|+.|.|+|++++.+||+++|||++....+ . ...+. + ...+.+... ......+...+.+..|++|.
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE-G--GFALQEGYSWLEGISKADIIEKSNNFELYFE 71 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe-c--cceeccchhhhccCCcccccccCCceEEEEE
Confidence 378999999999999999999999999864321 1 11111 1 111111000 00001111123355799999
Q ss_pred eCCHHHHHHHHHHcCC-eeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 100 TEDVYKLVENIRAKGG-NVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|+|+++++++|+++|+ ++..+|...++|.+. ++|+|||||+|||.+.
T Consensus 72 v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 72 EEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred ehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 9999999999999986 687888888877654 8999999999999875
No 55
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=3.2e-15 Score=111.64 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=81.7
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCce-eEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
||.+++|+.|.|+|++++.+||+++||++...+........ ...++..++ ..+.+...... ...+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEE
Confidence 57899999999999999999999999998866532211000 011222221 12333321111 1236899999
Q ss_pred EeC--CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 99 ATE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+ |+++++++|+++|+++... .....+....+||+||+||.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 997 7999999999999987643 222333334599999999999998753
No 56
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.68 E-value=1e-15 Score=114.33 Aligned_cols=117 Identities=23% Similarity=0.255 Sum_probs=80.5
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecc-
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD- 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d- 232 (291)
|.||.|.|+|++++.+||+++|||++.... + ... .+..+ +..+.+.............++.|++|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~-~~~--~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E-KTA--YFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C-ccc--eEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 579999999999999999999999976431 1 111 12221 244555332211111123478899999975
Q ss_pred -hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhh
Q 022851 233 -VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
++++++++ +++|+++..+|...+. +++.+||+||+|++|||.+.....
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~~~ 119 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTLAE 119 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcHHH
Confidence 66666666 9999998765544433 358999999999999999877643
No 57
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.68 E-value=2.9e-15 Score=109.03 Aligned_cols=114 Identities=24% Similarity=0.243 Sum_probs=82.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCH
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~ 103 (291)
+.|++|.|+|++++.+||+++|||++..... +.. ..+++..++. . ...+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG-A--VGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc-c--EEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865542 112 2334444321 1 12222111111 1233567999999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|.++|+++..+|...+++.. .++++||+|+.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGR-FAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEE-EEEEECCCCCEEEeEC
Confidence 99999999999999888777765444 5999999999999975
No 58
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.68 E-value=2.6e-15 Score=110.52 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=81.6
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+.+++|+|+.|.|+|++++.+||+++|||++..+.+ ..+++...+......+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 468999999999999999999999999999876632 134554322112222333211 1347899999
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+ |+++++++++++|+++...+..... .. .++|+||+|+.+|+....
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~-~~-~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGH-GK-AYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCC-cc-eEEEECCCCCEEEEEEec
Confidence 996 5889999999999987433222222 23 488999999999998653
No 59
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.6e-15 Score=112.13 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=82.4
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
++.+|.|++|.|+|++++.+||+++|||++..+.. ...++..++.. + .+.+.... ++..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~-~-~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARD-H-TLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCcc-E-EEEEEeCC--------CceEEEEEE
Confidence 58899999999999999999999999999865432 13556554322 2 22232211 356789999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecC--CCceEEEEEECCCCCEEEEEeCC
Q 022851 100 TED---VYKLVENIRAKGGNVTREPGPLK--GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d---~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+| +++++++++++|+++...+.... .+...+++|+||+||.||+....
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 99999999999998766543211 22334578999999999998764
No 60
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=9e-16 Score=112.87 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=80.1
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEee----ecCcceeecCcceeEEEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTY----NYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~h~~~ 228 (291)
++.++.|.|.|++++.+||+++|||++..... .. ..+ . . ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~-~~~-~--~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN-VTF-E--G---GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce-EEE-e--c---cceeccchhhhccCCcccccccCCceEEEE
Confidence 57899999999999999999999998754221 11 111 1 0 11111110 000111123345679999
Q ss_pred EecchhhhHHHHHHHHHHhCC-eeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 229 STDDVYKSAEVVNLVTQELGG-KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~-~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.|+|++++++++ +++|+ +++.+|...++ |.+.+||+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 99886 78888888777 46999999999999999875
No 61
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.67 E-value=4.5e-15 Score=114.81 Aligned_cols=118 Identities=22% Similarity=0.323 Sum_probs=79.7
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++|+||+|.|+|++++.+||+++|||++......+.+.....++..++.. + .+.+.. ..++++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~-~-~i~l~~-------~~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGV-H-DTALTG-------GNGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCc-c-eEEEec-------CCCCceeEEEEEcC
Confidence 68999999999999999999999999987554332222233444332211 1 122221 12347899999997
Q ss_pred C---HHHHHHHHHHcCCee--ecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 102 D---VYKLVENIRAKGGNV--TREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.. ...|.....+...++|++||+|++||++...
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 5 777889999999863 2233222222334588999999999998754
No 62
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=1.2e-15 Score=111.64 Aligned_cols=117 Identities=23% Similarity=0.327 Sum_probs=84.3
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce--eecCcceeEEEEEecch
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDDV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~~v~di 233 (291)
||.|.|.|++++.+||+++|||++.......+ ...++.+..... ....+.+........ ...+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999886643222 234444442211 134455543222211 12345778999999999
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+++.+++ +++|+++..+|...++ ++.+|++||+|++|||+|
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 9999999 9999999988844333 589999999999999975
No 63
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=2.7e-15 Score=110.62 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=82.8
Q ss_pred EEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCccee----ecCcceeEEEEEecc
Q 022851 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEY----TKGNAYAQVAISTDD 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~~~~~h~~~~v~d 232 (291)
-.|.|.|++++.+||+++||+++.......++......+..+ ...+.+......... ...++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999987655333332222233322 223444332221111 133567899999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
++++++++ +++|++++.+|...++ |.+.++++||+|++|+|.+
T Consensus 79 ~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 99999999 9999999999888776 4588999999999999975
No 64
>PRK06724 hypothetical protein; Provisional
Probab=99.67 E-value=4.2e-15 Score=110.16 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhc---CCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeE
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
.|+.+++||.|.|+|++++.+||+++| |++...... + . .+...+.+ ...... .....|..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g~~~l~l--~~~~~~--~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TGESEIYF--KEVDEE--IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CCCeeEEE--ecCCcc--ccCCCCcee
Confidence 367889999999999999999999966 666532111 1 1 11111111 111100 112347789
Q ss_pred EEEEe---CCHHHHHHHHHHcCCeeecCCeecC--CCceEEEEEECCCCCEEEEEeCC
Q 022851 96 FAIAT---EDVYKLVENIRAKGGNVTREPGPLK--GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 96 i~~~v---~d~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+||.| +|+++++++|.++|+++...|...+ ..+...++|+||||+.||+...+
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 99998 7899999999999999887776543 23334588999999999998774
No 65
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.67 E-value=2e-15 Score=112.86 Aligned_cols=118 Identities=25% Similarity=0.293 Sum_probs=84.9
Q ss_pred eeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchh
Q 022851 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.||.|.|+|++++.+||+++||+++......+ +.....++..+. .+..+.+.... ..+++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 48999999999999999999999986554322 222334444322 23345554311 1458899999999865
Q ss_pred ---hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhh
Q 022851 235 ---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
+.++++ +++|+++...|...+.++.+.+||+||+|++|||++..+..
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~~ 121 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYRI 121 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCccc
Confidence 444555 99999998887766654458899999999999999876643
No 66
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.67 E-value=2.3e-15 Score=113.66 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=83.8
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..+.. ...++..+ +..+.+...........+.++.|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 468999999999999999999999999764321 12233321 23444432211111112346789999997
Q ss_pred --chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 232 --DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|++++++++ +++|+++...|...++ +++.+||+||+||+|||++...
T Consensus 73 ~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 73 EEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred HHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCCH
Confidence 777777777 9999998877766655 3599999999999999998654
No 67
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=3.4e-15 Score=109.20 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=82.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCC--cccCCCCeeEEEEEeCCH
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~i~~~v~d~ 103 (291)
||.|.|+|++++.+||+++|||++..+....++ .....+..... ....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG-FRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC-cEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 899999999999999999999999877542222 22333332221 13334443322221 112344788999999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|.++|+++...+...++ . ..++++||+|++|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~-~-~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY-G-TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC-c-eEEEEECCCCCEEEEeC
Confidence 99999999999999887744443 3 35899999999999975
No 68
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.67 E-value=2.6e-15 Score=110.53 Aligned_cols=116 Identities=25% Similarity=0.300 Sum_probs=81.8
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
+++++.|+.|.|+|++++.+||+++|||++..... ..+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 36899999999999999999999999999875532 123443211111222222221 12478899999
Q ss_pred e---CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 100 T---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +|+++++++++++|+++...|.....+....+++.||+|++||++...
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 8 478999999999999987654333333334589999999999998653
No 69
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.67 E-value=5.7e-15 Score=110.32 Aligned_cols=116 Identities=26% Similarity=0.372 Sum_probs=85.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHH
Q 022851 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~ 104 (291)
+||.|.|+|++++.+||+++||+++......+ +.....++..++.. ..+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDH--HDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCc--ceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987664432 22345566654322 233333221 1458899999999874
Q ss_pred ---HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 105 ---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+++++|.++|+++...+...+.+...+++|+||+|++|||.+...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999887665545444445889999999999998764
No 70
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.67 E-value=2.5e-15 Score=112.25 Aligned_cols=114 Identities=22% Similarity=0.366 Sum_probs=80.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC--
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE-- 101 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~-- 101 (291)
|+||.|.|+|++++.+||+++|||++...... ..++..++ . .+.+.............++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~~------~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGEK------TAYFTIGG--T--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCCc------cceEeeCc--e--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 58999999999999999999999998654221 23444432 2 233322211111122347899999997
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+++++++|.++|+++...+....++.+ .++|+||+|++|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 4999999999999997655443433444 489999999999998875
No 71
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.66 E-value=2.9e-15 Score=116.39 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=82.0
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|++|.|+|++++.+||+++|||++........+.....++..... ...+.+... .. ...+++.|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~--~~--~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRD--PA--GARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecC--CC--CCCCCceEEEEECC
Confidence 4689999999999999999999999998765433322222334443221 223433221 11 12246799999999
Q ss_pred chh---hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 232 DVY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|.+ ++++++ ++.|+++...|..+.....+++|++||+|++|||++.
T Consensus 79 ~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 744 444455 9999998777766544334579999999999999987
No 72
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=7.3e-15 Score=108.29 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=84.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCC--cccCCCCeeEEEEEeCCH
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~i~~~v~d~ 103 (291)
+..|.|+|++++++||+++|||++......+++......+..++ ..+.+......... ....+.+..+++|.|+|+
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDV 79 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCH
Confidence 35689999999999999999999987654334433344455543 22333222111110 011334567999999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++++++.++|+++..+|...++|.+ .++++||+|++|+|.+
T Consensus 80 d~~~~~l~~~G~~v~~~~~~~~~g~~-~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 80 DAHYERARAAGAEILREPTDTPYGSR-EFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHCCCEEeeCccccCCCcE-EEEEECCCCCEEEEec
Confidence 99999999999999988888877755 4889999999999864
No 73
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=2.4e-15 Score=111.69 Aligned_cols=118 Identities=24% Similarity=0.361 Sum_probs=86.3
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccC-CcceeEEEecccCCCceeEEEEeeecCcce------eecCcceeEE
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQV 226 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~ 226 (291)
+.||.|.|.|++++.+||+++|||++....... +......++..+ +..+++..+..... ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987654432 223445555531 45667765433211 1245688999
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCC---CCeEEEee
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD---GWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~---G~~iel~~ 280 (291)
+|.|+|++++++++ .++|+++..+|.....+ ++.+++.||+ |++|||+|
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 99999999999999 99999998887644443 3556665555 99999985
No 74
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=1.8e-15 Score=116.30 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=81.9
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce-eecCcceeEEEEEec
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~ 231 (291)
.++||+|.|+|++++.+||+++|||++..... . .+.+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 37899999999999999999999999876542 1 222232111 2245677755322111 123357889999999
Q ss_pred c---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 232 D---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
| ++++++++ +++|+++. .+....+ .+.+||+||+|+.|||++..+
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECCC
Confidence 8 66666666 99999754 3333332 478999999999999998653
No 75
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.66 E-value=2.4e-15 Score=114.01 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=82.6
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|.|++++.+||+++|||++..... + ...++..+.. ...+.+.. ...+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~--~~~~~l~~-------~~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD--HHSIAIAR-------GPHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC--cceEEEcc-------CCCCceEEEEEECC
Confidence 468999999999999999999999999764421 1 1233443222 33454432 11357889999999
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|++++.+ +.++|+++|+++...|.....++.+++||+||+|++|||++...
T Consensus 69 d~~~l~~-~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMR-GIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHH-HHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 9766642 23444999999887765543333577899999999999998654
No 76
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.66 E-value=5.3e-16 Score=114.98 Aligned_cols=120 Identities=23% Similarity=0.244 Sum_probs=79.2
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeeccc--CCcceeEEEecccCCCceeEEEEeeecCcceeec---CcceeEEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDK--PEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK---GNAYAQVA 227 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~h~~ 227 (291)
+++||+|.|.|++++.+||+++|||++...... .........+.. ......+......+...... .....|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRI--GEGHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEES--TSSCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecc--cccceeeeeeccccccccccccccccceeEE
Confidence 478999999999999999999999999877652 222233444442 22233333322222111111 01446777
Q ss_pred EEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022851 228 ISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 ~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
+.+.+ ++++.++| ++.|+++..+|.+........+|++||+|++|||
T Consensus 79 ~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 77665 44555555 9999999999888776555557899999999997
No 77
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.66 E-value=3.2e-15 Score=110.09 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=77.8
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
..++.|+.|.|+|++++.+||+++|||++..+.. . ..++...+......+.+.. ...++..|++|.+
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 3578999999999999999999999999776532 1 2233321221234454432 1235789999999
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++ .+.++.+.++++++|+++...+.. ++ .++.+||+||+||+|||....
T Consensus 71 ~~-~~~v~~~~~~l~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 71 SS-PEALERRVAALEASGLGIGWIEGD-PG-HGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CC-HHHHHHHHHHHHHcCCccccccCC-CC-CcceEEEECCCCCEEEEEEec
Confidence 86 333333344449999987443322 23 247899999999999998643
No 78
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.66 E-value=1e-14 Score=120.39 Aligned_cols=224 Identities=17% Similarity=0.231 Sum_probs=143.7
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcc--cCCCCeeEE
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHF 96 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~i 96 (291)
+...++.+|.+.|+|.+.+..=|-..|||+...+-... ....++.| +..+++.-.+.+....+ .+|++++.+
T Consensus 18 ~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk----~v~l~rQG--dinlvvn~~~~s~a~~f~~~Hgps~~a~ 91 (363)
T COG3185 18 EGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK----AVTLYRQG--DINLVVNAEPDSFAAEFLDKHGPSACAM 91 (363)
T ss_pred CCCCceeEEEEecCCHHHHHHHHHHHhCcccccccccc----ceeEEEeC--CEEEEEcCCCcchhhHHHHhcCCchhee
Confidence 44899999999999995555545555999987653221 12223333 55555544333333333 378899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCe-----ecC----CCceEEEEEECCCC-C-E--EEEEeC--CC--C---CCCcee
Q 022851 97 AIATEDVYKLVENIRAKGGNVTREPG-----PLK----GGTTHIAFVKDPDG-Y-I--FELIQR--GP--T---PEPLCQ 156 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~-----~~~----~g~~~~~~~~dp~G-~-~--iel~~~--~~--~---~~~~~h 156 (291)
+|.|+|...++++..++|++....+. ..+ -|+. .+|+.|..| . + .++... .. . ...|+|
T Consensus 92 a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggs-llyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDH 170 (363)
T COG3185 92 AFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGS-LLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDH 170 (363)
T ss_pred EEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCc-EEEEeccCCCCcccccccccccccccccccCceeech
Confidence 99999999999999999996433221 111 1222 467777763 1 1 111111 01 1 236899
Q ss_pred EEeee--CCchhhHHHHHHhhCCeeeeecccCCcceeEEEecc-cCCCceeEEEEeeecCcce---------eecCccee
Q 022851 157 VMLRV--GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGY-AEEDQTTVLELTYNYGVTE---------YTKGNAYA 224 (291)
Q Consensus 157 v~l~v--~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~~~---------~~~~~~~~ 224 (291)
++..| ..++....||+++|||+.....+.++. ++....+. .+.++. +.|.-+-+... ...|.|++
T Consensus 171 l~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p-~tgl~Sram~Sp~G~--vrlplN~s~~~~sqi~efl~~y~G~GIQ 247 (363)
T COG3185 171 LTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGP-ITGLRSRAMVSPCGK--VRLPLNESADDKSQIGEFLREYRGEGIQ 247 (363)
T ss_pred hhhhcchhhHHHHHHHHHHHhCccceeeEeccCC-cccEEEeeEecCCCc--EEeecccCCCchhHHHHHHHHhCCCcce
Confidence 99888 579999999999999998876655443 22222111 112223 44433332221 23677999
Q ss_pred EEEEEecchhhhHHHHHHHHHHhCCeeecCCc
Q 022851 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 225 h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
||+|.++||.++++++ +++|+++...|.
T Consensus 248 HIA~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 248 HIAFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred EEEecccHHHHHHHHH----HHcCCccCCCch
Confidence 9999999999999999 999999988773
No 79
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.65 E-value=7.6e-15 Score=111.30 Aligned_cols=114 Identities=20% Similarity=0.407 Sum_probs=83.5
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+++|+.|.|+|++++.+||+++|||++..... + ...++..++... .+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 378999999999999999999999999865432 1 235565543322 2333221 1247889999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
|++++. ++|+++|+++...+.....+...++||+||+|+.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 887765 899999999876654433333445889999999999999864
No 80
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=4e-15 Score=110.10 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=79.9
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeec--------C--cceeecCcce
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY--------G--VTEYTKGNAY 223 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~~~ 223 (291)
+.|+.|.|+|++++.+||+++|||++..... +..+.. +..+ ...+.+.... . +......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999998754322 111221 1111 1122111100 0 0001122345
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.|++|.|+|++++++++ +++|+++..+|...++ |.+.++++||+|+.|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 79999999999999999 9999999888887777 45889999999999999874
No 81
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.65 E-value=5.8e-15 Score=109.20 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=79.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCC-ceeEEEeecCCCCceeEEEeeccCCCC--cccCCCCeeEEEEE
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~g~~~i~~~ 99 (291)
+|+||+|.|+|++++++||+++|||+...+....+. .....++..........+.+....... ......++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998877543221 112233332211112233443221111 11223468899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
|+ ++++++++++++|+++...+.. ++. ..++++||+|++|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FGE-RSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cce-EEEEEECCCCCEEEeC
Confidence 98 5799999999999998654332 333 3488999999999984
No 82
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.65 E-value=8.5e-15 Score=112.57 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=81.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCc-ccCCCCeeEEEEEeC
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATE 101 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~~~v~ 101 (291)
+++||+|.|+|++++.+||+++|||++..+.. + ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57999999999999999999999999876643 1 123333221 1223444443322111 122347899999998
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 102 D---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.+.. +.... ....+||+||+|+.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-ccccc--cEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999997543 22222 234589999999999999875
No 83
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=4.3e-15 Score=109.71 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=82.4
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCc---ceeecCcceeEEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV---TEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~h~~~ 228 (291)
.++.|+.|.|.|++++.+||+++|||+........ .+.. +..+ ...+++...... .....+++..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~--~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKA--LRFG----SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceE--EEeC----CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 46899999999999999999999999977543211 1222 2211 134555332211 11123457899999
Q ss_pred Eecc-hhhhHHHHHHHHHHhCCeeecCCcccCC--CCceEEEEECCCCCeEEEee
Q 022851 229 STDD-VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~d-i~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~Dp~G~~iel~~ 280 (291)
.+++ ++++.+++ .++|+++...|...++ ++++.+||+||+|++||+++
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 88888887 9999998877765432 23478999999999999987
No 84
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.65 E-value=1.1e-14 Score=107.19 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=84.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCC--CcccCCCCeeEEEEEeCCHH
Q 022851 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--TSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 27 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~g~~~i~~~v~d~~ 104 (291)
+.|.|+|++++.+||+++|||++......+.+......+..++. .+ .+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~--~~--~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDS--VL--MLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCE--EE--EEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 45899999999999999999999877654444444455555432 22 22221111 11123346789999999999
Q ss_pred HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++++.++|+++..++...++|.+ .++++||+|+.|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDR-YGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccce-EEEEECCCCCEEEEecC
Confidence 9999999999999888877777665 48999999999999863
No 85
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=1.5e-14 Score=107.05 Aligned_cols=117 Identities=26% Similarity=0.401 Sum_probs=83.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCC-CcccCCCCeeEEEEEe
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIAT 100 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~v 100 (291)
++|+||.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+...... .......++.|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 479999999999999999999999999987632 135555433 1233334332221 1222345789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
. ++++++++|.++|+++... ...+. ...+|++||+|+++||....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecC
Confidence 7 4889999999999987543 22222 234889999999999987654
No 86
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=1e-14 Score=107.83 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=79.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeec---cC---C--CCcccCCCCeeE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY---NY---G--VTSYDIGTGFGH 95 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~---~--~~~~~~~~g~~~ 95 (291)
+.|+.|.|+|++++.+||+++|||++..... .+.+ ..+..+ ...+.+.... .. . .......++..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4799999999999999999999999865422 1111 112222 1111111110 00 0 011112224468
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++|.|+|++++++++.++|+++..++...++|.. .++++||+|+.+++++.
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQT-VAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcE-EEEEECCCCCEEEEecC
Confidence 9999999999999999999999888877777765 48899999999999863
No 87
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=3.2e-15 Score=108.29 Aligned_cols=113 Identities=26% Similarity=0.322 Sum_probs=79.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCC-cccCCCCeeEEEEEeCC
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-SYDIGTGFGHFAIATED 102 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~i~~~v~d 102 (291)
|+|++|.|+|++++.+||+++|||++..+...+. ...++..++. .. +.+....... ....+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~-~~--i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGDG-PQ--LHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCCC-cE--EEEEecCCCccccCCCcccceEEEEeCC
Confidence 5899999999999999999999999875533221 2345554433 12 2332221111 11233467899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022851 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
++++++++.++|+++...+.. ..+.. .+++.||+|+++||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998876544 33344 48899999999986
No 88
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=7.1e-15 Score=109.76 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCc--ceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
..+.|++|.|+|++++.+||+++||+++..+...... ....++.. + ...+++..... ...++..|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-G----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-C----CeEEEEecCCC----CCCCCceEEEEE
Confidence 3689999999999999999999999987554321110 00011111 1 23555543211 123468999999
Q ss_pred ec--chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 230 TD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 230 v~--di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
|+ +++++.+++ +++|+++..+. ....+.++.+||+||+||.|||......
T Consensus 74 v~~~~ld~~~~~l----~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~~~ 125 (131)
T cd08364 74 ISDSDVDEYTERI----KALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGTLE 125 (131)
T ss_pred cCHHHHHHHHHHH----HHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCCHH
Confidence 97 455555555 99999875443 2223235899999999999999976543
No 89
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=1.1e-14 Score=107.51 Aligned_cols=112 Identities=19% Similarity=0.316 Sum_probs=80.5
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
..+++|+.|.|+|++++.+||+++|||+...... . ..++..++ . ..+.+.... ...+..|++|.+
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~--~~l~~~~~~------~~~~~~h~a~~v 66 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--FAVVKLDN-G--VSLDFAQPD------GEIPPQHYAFLV 66 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--EEEEEcCC-C--cEEEEecCC------CCCCcceEEEEe
Confidence 4688999999999999999999999999865321 1 22333322 2 223333211 112467999888
Q ss_pred C--CHHHHHHHHHHcCCeeecCCeec-------CCCceEEEEEECCCCCEEEEEeCC
Q 022851 101 E--DVYKLVENIRAKGGNVTREPGPL-------KGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~--d~~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+ |+++++++|.++|+++...|... .++.+ .++|+||+|+.|||++.+
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGR-GVYFLDPDGHLLEIITRP 122 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCee-EEEEECCCCCEEEEEecc
Confidence 6 69999999999999987665543 23444 599999999999999863
No 90
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=9.3e-15 Score=110.27 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=82.5
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCH-
Q 022851 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV- 103 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~- 103 (291)
.||.|.|+|++++.+||+++|||++..+... ..+|+.......+..+.+.. ....+++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4999999999999999999999998766421 24555532222222222211 1234899999999765
Q ss_pred --HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCC
Q 022851 104 --YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 104 --~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
++++++|.++|+++...|...+.+...++||+||+|+.||+.-....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~ 117 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEE 117 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcce
Confidence 56799999999998776665554444568999999999999887643
No 91
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.64 E-value=1.1e-14 Score=106.28 Aligned_cols=112 Identities=26% Similarity=0.425 Sum_probs=84.1
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++++|+.|.|+|++++.+||+++|||++..+.+ ..+++..+. .....+.+... ...+..|++|.|.
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 478999999999999999999999999887642 135555542 12233333221 1247889999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++++++++++++|+++...+...+++.. .+++.||+|+++|++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEcc
Confidence 6889999999999998877654554444 489999999999998653
No 92
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=8.8e-15 Score=108.76 Aligned_cols=117 Identities=25% Similarity=0.277 Sum_probs=83.2
Q ss_pred CceeEEeeeCCchhhHHHHHHhh---CCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce---eecCcceeEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~ 226 (291)
+++||.|.|.|++++.+||+++| ||++..... + ...+... ..+..+.+........ ...++++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 999876531 1 1122211 1245666655433221 1234578999
Q ss_pred EEEecc---hhhhHHHHHHHHHHhCCeeecCCccc--CCCCceEEEEECCCCCeEEEeec
Q 022851 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 227 ~~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+|.|+| ++++.+++ +++|+++...+... ...+.+.+|++||+|++|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999975 66666666 99999998877642 22245899999999999999853
No 93
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.64 E-value=1.6e-14 Score=105.07 Aligned_cols=111 Identities=22% Similarity=0.314 Sum_probs=80.3
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
|++++|+.|.|+|++++.+||++ |||+...+.. + ..++..++.. ...+..... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGTD-PFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCCc-cEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 9999865532 1 2445432222 222222111 124788999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+|.+++.+.++++|......+. .+++.. .++|+||+|+.|||+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEecc
Confidence 9999999999999998765432 344444 589999999999998763
No 94
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.64 E-value=2.9e-15 Score=108.51 Aligned_cols=113 Identities=23% Similarity=0.147 Sum_probs=80.4
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce-eecCcceeEEEEEecc
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~d 232 (291)
++|++|.|.|++++.+||+++|||++........ .. .++..++ ...+.+........ ...+++..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~--~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-PG--AWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-Cc--eEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 5799999999999999999999998765433221 11 2222222 12445543322211 1234577899999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022851 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
++++++++ .++|+++..++.. .. +.+.+|+.||+|++|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 99999999 9999998887754 22 35889999999999996
No 95
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.64 E-value=1.1e-14 Score=106.77 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=79.7
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCC--C---cccCCCCeeEEEEE
Q 022851 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--T---SYDIGTGFGHFAIA 99 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~---~~~~~~g~~~i~~~ 99 (291)
.+..|.|+|++++.+||+++|||+...... ....+..++. .+.+.+...... . ....+.+ .|++|.
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 73 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFE 73 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEE
Confidence 368899999999999999999999876521 1233433322 233333221111 1 1112334 489999
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|+|++++++++.++|+++...|...++|.+. ++++||+|++|+|++
T Consensus 74 v~did~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 119 (119)
T cd08359 74 VDDVDAEYERLKAEGLPIVLPLRDEPWGQRH-FIVRDPNGVLIDIVQ 119 (119)
T ss_pred ECCHHHHHHHHHhcCCCeeeccccCCCcceE-EEEECCCCCEEEEEC
Confidence 9999999999999999988777777776554 889999999999985
No 96
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=3.8e-15 Score=110.55 Aligned_cols=119 Identities=29% Similarity=0.506 Sum_probs=83.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecC-CCceeEEEeecCCCCceeEEEeeccCC-CCc-----ccCCCCeeEE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYG-VTS-----YDIGTGFGHF 96 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~-----~~~~~g~~~i 96 (291)
|+||+|.|+|++++.+||+++|||+........ ++....+++..++ ..+.+..+.. ..+ ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGN----VQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCC----EEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997765432 2233455665432 2233332211 111 1246789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCC--CCEEEEEe
Q 022851 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPD--GYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~--G~~iel~~ 146 (291)
+|.|+|++++++++.++|+++...+.....++..+.++.+|+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999998887653444444434444444 99999975
No 97
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.64 E-value=9.6e-15 Score=107.37 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=80.7
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
+++.||+|.|+|++++.+||+++|||+...+.. . ..+++..++. .+.+.+... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~-------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDR--AWRIAVHPG-------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCC--ceEEEEEeC-------CCCceeEEEEEEC
Confidence 468999999999999999999999999865421 1 1345554332 333333321 1236789999996
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEeCC
Q 022851 102 ---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+++++++|.++|+++...+... ..+...+++|+||+|+.||++...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58899999999999987654221 222234589999999999998764
No 98
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=5.1e-15 Score=109.53 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=79.8
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCc--ceeEEEecccCCCceeEEEEeeecCcce--eecCcceeEEEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~ 228 (291)
.+.|+.|.|.|++++.+||+++|||++.......+. .+.+.+.. .....+..++|........ .....+..|++|
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f 79 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGD-GLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAF 79 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEec-CCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEE
Confidence 378999999999999999999999998765433221 22233222 1112244666654322211 112346789999
Q ss_pred Eecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 229 STDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
.|+| ++++++++ +++|+++..++.. + +.+.+||+||+|++|||+
T Consensus 80 ~v~~~~~~~~~~~~~----~~~g~~~~~~~~~--~-~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 80 SVPSEASLDAWRERL----RAAGVPVSGVVDH--F-GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EcCCHHHHHHHHHHH----HHcCCcccceEee--c-ceEEEEEECCCCCEEEeC
Confidence 9985 45555555 9999998655433 2 358899999999999985
No 99
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.64 E-value=4.4e-15 Score=109.27 Aligned_cols=114 Identities=25% Similarity=0.220 Sum_probs=78.9
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..... . . .++..........+.+.. ...++..|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----D-R-IYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----C-e-EEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 478999999999999999999999999765421 1 1 222211111233444432 12347889999995
Q ss_pred ---chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 232 ---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
|+++..+++ +++|+++...|.....+.++.+|+.||+|++|||+...
T Consensus 70 ~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 555566666 99999987765443332348899999999999998654
No 100
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.64 E-value=1e-14 Score=107.36 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=83.7
Q ss_pred EEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc--eeecCcceeEEEEEecchh
Q 022851 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~h~~~~v~di~ 234 (291)
..|.|.|++++.+||+++||++........++......+..+ +..+.+....+.. ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 458899999999999999999987665433333333333322 2345554322210 0113456789999999999
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
++++++ .+.|++++.+|...++ +.+.++++||+|++|+|+|
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 999999 9999999988876666 4689999999999999987
No 101
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.64 E-value=6.3e-15 Score=106.21 Aligned_cols=120 Identities=28% Similarity=0.356 Sum_probs=90.6
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
+..+.|..|.+.|++++.+||.++|||+........+.+|..+...- ....+ .+.-.. . ...++..+.+.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~-~~~gG-~l~~~~--~---~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG-AGAGG-GLMARP--G---SPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC-ccccc-eeccCC--c---CCCCCCCEEEEEec
Confidence 45788999999999999999999999998776555444454443331 11122 221111 1 11225678999999
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+|++++++++ +++|++++.++...|+ +++.+.+.||.||+|.|.+..
T Consensus 80 ~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999 9999999999999886 369999999999999998753
No 102
>PRK06724 hypothetical protein; Provisional
Probab=99.63 E-value=5.2e-15 Score=109.67 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCceeEEeeeCCchhhHHHHHHhh---CCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (291)
..++||.|.|+|+++|.+||+++| ||+.........+ ...+.+.. .+.. .....+..|+||
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~-~~~~-~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKE-VDEE-IVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEec-CCcc-ccCCCCceeEEE
Confidence 469999999999999999999977 5554321111111 11222211 1100 012346789999
Q ss_pred Ee---cchhhhHHHHHHHHHHhCCeeecCCcccC--CCCceEEEEECCCCCeEEEeec
Q 022851 229 ST---DDVYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v---~di~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.| +|+++..+++ +++|+++..+|...+ ..|.+.+||+||||+.|||+..
T Consensus 70 ~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 70 QAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred ecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 98 5566666666 999999988886544 2334789999999999999865
No 103
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.63 E-value=2.5e-14 Score=106.35 Aligned_cols=116 Identities=22% Similarity=0.338 Sum_probs=81.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhc---CCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCc--c-cCCCCeeEE
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS--Y-DIGTGFGHF 96 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~l---G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~-~~~~g~~~i 96 (291)
+|+||.|.|+|++++.+||+++| ||++..+.. +. ..|... ... ..+.+.......+ . ..+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~-~~~--~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG-DGG--TYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec-CCc--eEEEEEecccCCCcccccCCcCeeEE
Confidence 57999999999999999999999 999877642 11 223322 122 2334433222111 1 234578999
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCeec--CCCceEEEEEECCCCCEEEEEe
Q 022851 97 AIATE---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|.|+ |+++++++|+++|+.+...+... ..+....++++||+|+++||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 99997 58899999999999988766542 1223345889999999999975
No 104
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.63 E-value=7.2e-15 Score=108.53 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=79.6
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|.|++++.+||+++|||++.... +.+....+. . +..+.+... . ...+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~--~----~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP--D----GEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC--C----CCCCcceEEEEeC
Confidence 46789999999999999999999999976522 112222222 1 344555432 1 1235689999886
Q ss_pred --chhhhHHHHHHHHHHhCCeeecCCccc------CCCCceEEEEECCCCCeEEEeec
Q 022851 232 --DVYKSAEVVNLVTQELGGKITRQPGSI------PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~p~~~------~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|+++.++++ .+.|+++...|... ...+++.+||+|||||.|||+++
T Consensus 68 ~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 68 EEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 477777777 99999987776543 12346999999999999999987
No 105
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=5.7e-15 Score=109.23 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=78.1
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.||.|.|+|++++.+||+++|||++..+.. . ..++..+. .+..+.+.. + .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~--~~~~i~l~~--~------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDA--RDHTLVYIE--G------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCC--ccEEEEEEe--C------CCceEEEEEEEC
Confidence 468999999999999999999999999765421 1 23344322 234444432 1 135679999998
Q ss_pred c---hhhhHHHHHHHHHHhCCeeecCCcccC--CCCceEEEEECCCCCeEEEeech
Q 022851 232 D---VYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
| ++++.+++ +++|+++...+.... ..+.+++||+|||||+|||..+.
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 7 66666666 999999877654211 22347789999999999998654
No 106
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.63 E-value=6.7e-15 Score=108.21 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=77.8
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecc
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d 232 (291)
++.||.|.|+|++++.+||+++|||++..+.. .. ..++..++ .+..+.+... ..++..|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DG--ALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---CC--eEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 58899999999999999999999999765421 11 22233222 2445555321 12477899999976
Q ss_pred ---hhhhHHHHHHHHHHhCCeeecCCccc--CCCCceEEEEECCCCCeEEEeec
Q 022851 233 ---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 233 ---i~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+++.+++| +++|+++...|... ..++++.+||+|||||.|||...
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 55556666 99999988665321 22234799999999999999864
No 107
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.63 E-value=1.9e-14 Score=105.73 Aligned_cols=113 Identities=25% Similarity=0.365 Sum_probs=81.8
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+.+|+|+.|.|+|++++.+||+++|||+...... ...++..++. ....+.+... ..++..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999875532 1344443322 2222333211 123678999999
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCee--cCCCceEEEEEECCCCCEEEEEeCC
Q 022851 101 ---EDVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+++++++++|.++|+++...+.. .+++.+ .++|.||+|++++|+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 57899999999999998766532 233444 488999999999998764
No 108
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=1.2e-14 Score=107.61 Aligned_cols=118 Identities=22% Similarity=0.302 Sum_probs=81.6
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc-eeecCcceeEEEEEe
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVAIST 230 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~h~~~~v 230 (291)
+++.|+.|.|.|++++.+||+++|||++.... + ..+.+..++ ....+.+....... ......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 46899999999999999999999999987652 1 123333222 24556664432211 112345788999999
Q ss_pred cc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
++ +++.++++ +++|+++.. +...+. .+.+|++||+||+|||....+.
T Consensus 73 ~~~~~v~~~~~~l----~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 73 PSRADLAAALRRL----IELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CCHHHHHHHHHHH----HHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecCc
Confidence 86 55555555 999998754 333333 3789999999999999987654
No 109
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.63 E-value=1.3e-14 Score=108.77 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=82.0
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecc
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d 232 (291)
++.|+.|.|+|++++.+||+++|||++...... . ...++..+. .....+.+............++..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999997654321 1 233333221 12345555543222111233578899999998
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
+++. +.+.++|.++|+++...+. .+ +++.+|++||+|++|||+...+.
T Consensus 76 ~~~v-~~~~~~l~~~G~~~~~~~~-~~--~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDL-RDLYERLRAAGITPVWPVD-HG--NAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHH-HHHHHHHHHCCCCccccCC-CC--ceeEEEEECCCCCEEEEEEcCCC
Confidence 5542 2233444999998876543 22 24889999999999999986654
No 110
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.61 E-value=1.6e-14 Score=105.90 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=79.5
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc----eeecCcceeEEEEEec
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----EYTKGNAYAQVAISTD 231 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~h~~~~v~ 231 (291)
+..|.|.|++++.+||+++|||++.... ..+ ..+..++. ...+.+....... .....+...|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 5689999999999999999999977542 112 22222111 2344443221111 0111223459999999
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
|++++.+++ .++|+++..+|...++ |.+.++++||+|++|||+|
T Consensus 76 did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 999999999 9999998888877776 4589999999999999986
No 111
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.61 E-value=1.7e-14 Score=104.59 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=79.4
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhh
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
...|.|+|++++.+||+++|||++... .+ ...++.... ..+..+.+..... .++...|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 346889999999999999999997532 11 222222211 1234455532211 12345799999999999
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+.+++ ++.|+++...|...++ |.+.+|+.||+||+|+|+++
T Consensus 71 ~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 99999 9999999888877666 45889999999999999975
No 112
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.61 E-value=2.1e-14 Score=104.91 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=81.4
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
+++.|+.|.|.|++++.+||+++|||++..... . ..++..+. ..+..+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----G--SVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----C--eEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 478999999999999999999999999876531 1 22333221 12344444321 1246789999998
Q ss_pred c---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 232 D---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+ +++..+++ +++|+++...|...++ +++.+|+.||+|++||++...
T Consensus 67 ~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHL----EAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEcc
Confidence 4 55566666 9999999888765555 358999999999999998653
No 113
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.60 E-value=4.1e-14 Score=120.94 Aligned_cols=121 Identities=18% Similarity=0.272 Sum_probs=83.9
Q ss_pred CCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCce-eEEEeecCCCCceeEEEeeccCCCCcccCCCC-eeE
Q 022851 18 KKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG-FGH 95 (291)
Q Consensus 18 ~~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g-~~~ 95 (291)
.+.+++|+||+|.|+|++++.+||+++|||++..+...+++.. ...++..+.. .+ .+.+... .+.| ++|
T Consensus 140 ~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-------~~~g~~~H 210 (303)
T TIGR03211 140 GVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-AH-DIAFVGD-------PEPGKLHH 210 (303)
T ss_pred CcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-Cc-ccceecC-------CCCCceEE
Confidence 3458899999999999999999999999999876644333322 2344443221 11 1111110 1234 899
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 96 FAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+||.|+| +++++++|+++|+++...|...+.+...++||+||+|+++|+...
T Consensus 211 iaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 211 VSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 9999986 555788999999998776654443333469999999999999833
No 114
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.60 E-value=9.3e-14 Score=104.12 Aligned_cols=119 Identities=25% Similarity=0.436 Sum_probs=81.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCC
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d 102 (291)
+|+|+.|.|+|++++.+||+++|||++...... . ...++..+.. ....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765432 1 2345544311 1223333322221111233478899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 103 VY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 103 ~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
++ +++++|.++|+++...+. . ++. ..++++||+|+++||+...+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~-~~~-~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H-GNA-WSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C-Cce-eEEEEECCCCCEEEEEEcCC
Confidence 65 578999999998776432 2 223 34889999999999998764
No 115
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.60 E-value=2.3e-14 Score=105.18 Aligned_cols=112 Identities=28% Similarity=0.380 Sum_probs=79.0
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..... ++.+ +.... .....+.+.. ...++..|++|.++
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVY--LRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEE--EECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 368999999999999999999999999764421 2332 22111 1233344322 11246789999995
Q ss_pred ---chhhhHHHHHHHHHHhCCeeecCCcc--cCCCCceEEEEECCCCCeEEEeech
Q 022851 232 ---DVYKSAEVVNLVTQELGGKITRQPGS--IPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~--~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++++.++++ +++|+++..+|.. .++ +++.++++||+||+|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~-~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPG-GGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCC-CceEEEEECCCCCEEEEEecc
Confidence 566666666 9999998877643 333 458899999999999998764
No 116
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.60 E-value=1.7e-14 Score=103.88 Aligned_cols=108 Identities=26% Similarity=0.334 Sum_probs=76.0
Q ss_pred eeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhhHH
Q 022851 159 LRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAE 238 (291)
Q Consensus 159 l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~ 238 (291)
|.|+|++++.+||+++|||++..... .+..+... ..-......+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLG--FRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEET--EEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEec--cchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999887321 12222222 100011222222111 11234588999999999999999
Q ss_pred HHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 239 VVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 239 ~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++ +++|++++.+|...++ +.+.++++||+|++|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 9999999999888777 469999999999999986
No 117
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.60 E-value=3.5e-14 Score=102.16 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=75.4
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHHHH
Q 022851 29 YRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVE 108 (291)
Q Consensus 29 l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~~ 108 (291)
|.|+|++++++||+++|||++....+. ...+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPD------YVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETS------EEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCC------eEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 689999999999999999999884331 233332211000011111111 112234578899999999999999
Q ss_pred HHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 109 NIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
+++++|+++...|...++|.. .+++.||+|++|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999999888888777654 499999999999986
No 118
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.60 E-value=3e-14 Score=103.21 Aligned_cols=109 Identities=25% Similarity=0.270 Sum_probs=79.1
Q ss_pred EeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhhH
Q 022851 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~ 237 (291)
.|.|+|++++.+||+++|||++..... +. .+.++..+ +..+.+....+.... ..++..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999776542 12 22333321 345555443322111 2346679999999999999
Q ss_pred HHHHHHHHHhCCe-eecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 238 EVVNLVTQELGGK-ITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 238 ~~l~~~~~~~G~~-~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+++ +++|++ +..++...++ +.+.++++||+|+.|||+|
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999 999998 5666665555 4588999999999999986
No 119
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.59 E-value=4e-14 Score=102.92 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|.|++++.+||++ |||++..+.. . .++ +...+. ....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~--~~~-~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---D--ELY-YRGYGT-DPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---C--eEE-EecCCC-ccEEEEccc-------CCcCcccEEEEEEC
Confidence 4689999999999999999999 9998765421 1 222 332111 122222211 11357889999999
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|.++..+.+ ++.|..+...+. .++ +++.+||+||+||.|||+..
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 988888877 888998765443 344 35899999999999999864
No 120
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=2.6e-14 Score=103.77 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=73.7
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec--ch
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~--di 233 (291)
||.|.|+|++++.+||+++|||+...+.. + ...+.+. ...+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~~~~~------~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAYFELA------GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeEEEec------CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999765431 1 1111111 2344443222111 12346789999995 56
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+++++++ .++|+++...+...+. +++.+|++||+|++|||+..
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 6666666 9999997654333333 35899999999999999864
No 121
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=4.9e-14 Score=102.33 Aligned_cols=109 Identities=23% Similarity=0.403 Sum_probs=75.8
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe--CCH
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT--EDV 103 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v--~d~ 103 (291)
|+.|.|+|++++.+||+++|||++..+.+. ..++..+. ..+.+...... + ..+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~------~~~~~~~~----~~l~~~~~~~~-~-~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK------EAYFELAG----LWICLMEEDSL-Q-GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc------eeEEEecC----eEEEeccCCCc-C-CCCCCccEEEEEcCHHHH
Confidence 899999999999999999999998765421 23343332 12223222111 1 1234678999999 479
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+++++++.++|+++...+.....+.. .++++||+|+++|++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEGR-SIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCce-EEEEECCCCCEEEEEeC
Confidence 99999999999997654332222333 48999999999999865
No 122
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=4.6e-14 Score=103.88 Aligned_cols=109 Identities=28% Similarity=0.462 Sum_probs=78.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe--
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT-- 100 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v-- 100 (291)
+|+|+.|.|+|++++.+||+++|||++....+ + ..++..++ ..+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 57899999999999999999999999876532 1 23444332 22222221111 1234678999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+|++++++++.++|+++...+.. .+ . .++|.||+|+++||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~-~-~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG-D-SFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc-c-EEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 12 2 588999999999999764
No 123
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.57 E-value=1.3e-13 Score=117.33 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=84.1
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
..+++++||+|.|+|++++.+||+++|||++..+...+.+.....++..+. ..+ .+.+.. ..+++++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-------~~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG-GVH-DIALTN-------GNGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC-CcC-ceEeec-------CCCCceeeEEE
Confidence 358899999999999999999999999999876643333332334443222 111 122211 12358999999
Q ss_pred EeCC---HHHHHHHHHHcCCe--eecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 99 ATED---VYKLVENIRAKGGN--VTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|++ +...|.....+...++|++||+|++||++...
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9998 55568999999987 54444433333334689999999999998864
No 124
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=6.7e-14 Score=103.00 Aligned_cols=111 Identities=30% Similarity=0.327 Sum_probs=76.5
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe--
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST-- 230 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v-- 230 (291)
++.|+.|.|+|++++.+||+++|||++..... + . .++..+ ...+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~----~~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAG----DLWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecC----CEEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 47899999999999999999999999765322 1 1 122221 123333221111 1235778999998
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
+|++++++++ +++|+++..++.. + ++.+||+||||++|||+.....
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~~~ 113 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGSLA 113 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCCHH
Confidence 4566666666 9999987655432 2 3789999999999999976653
No 125
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.3e-13 Score=101.77 Aligned_cols=114 Identities=25% Similarity=0.318 Sum_probs=77.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHh---cCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022851 24 FLHAVYRVGDLDRTIKFYTEC---FGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~---lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+.|+.|.|+|++++.+||+++ ||++...+.. + . .+.+..+.....+. +..+....+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-~--~~~~~~~~~~~~~~--l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-G--AVGYGKGGGGPDFW--VTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-c--eeEeccCCCCceEE--EeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 6999875531 1 1 22233222222233 3322211111 222457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecCC--CceEEEEEECCCCCEEEEE
Q 022851 101 ED---VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~ 145 (291)
+| ++++++++.++|+.+...|...++ .....++++||+|+.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998877665543 2333488999999999986
No 126
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=1.4e-13 Score=101.29 Aligned_cols=113 Identities=28% Similarity=0.451 Sum_probs=78.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCC------CcccCCCCeeEEE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV------TSYDIGTGFGHFA 97 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~g~~~i~ 97 (291)
+.|+.|.|+|++++++||+++|||++..+. ++ ...++..++. ..+ .+...... .......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~-~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR-GML--LLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC-cEE--EEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 12 1345555443 222 22211110 0111234788999
Q ss_pred EEe--CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 98 IAT--EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v--~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|.+ +|++++++++.++|+++...+. ..++... ++++||+|+++|+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~~-~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGRS-LYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCeeE-EEEECCCCCEEEEec
Confidence 998 5899999999999998876544 2334444 889999999999986
No 127
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.57 E-value=1.6e-13 Score=99.55 Aligned_cols=109 Identities=20% Similarity=0.269 Sum_probs=78.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHH
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
+..|.|+|++++.+||+++|||++.... + ...++..++ .....+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 4578899999999999999999986431 1 123333222 1123333332211 12245699999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++|+++|+++...+...++|... +++.||+||+|+|+++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWGVRR-FFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCceEE-EEEECCCCCEEEEEEc
Confidence 9999999999988877766665544 8899999999999975
No 128
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.4e-14 Score=112.68 Aligned_cols=127 Identities=39% Similarity=0.671 Sum_probs=107.6
Q ss_pred CCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCC-----------cceeEEEecccCCCceeEEEEeeecCcceeec
Q 022851 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK 219 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 219 (291)
..+.-|+.+.|.|.+++++||+++|||++.+....++ ++++-.|+++++++.++++||+.|++-..+..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 3567899999999999999999999999887655544 67788899999999999999999999988999
Q ss_pred CcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhhhhhhhc
Q 022851 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEIQS 290 (291)
Q Consensus 220 ~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~~~ 290 (291)
|+++.|+.+.++|+.+.++.+ ..-|.+ ..+.-.+++.||||..|+|.++.+..+++|+
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~ 152 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQ 152 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEE
Confidence 999999999999988887777 544432 1123578899999999999999888888774
No 129
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=8.6e-14 Score=102.68 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=76.4
Q ss_pred ceeEEeeeCCchhhHHHHHHh---hCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEe
Q 022851 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
+.|+.|.|+|++++.+||+++ |||+..... .+ ..+. +.... ....+.+..+.+..+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~--~~~~-~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP--GAVG-YGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC--ceeE-eccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999999 588876442 11 1232 23211 2345555443322111 123457999999
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCC--CCceEEEEECCCCCeEEEe
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~Dp~G~~iel~ 279 (291)
+|. +.++.+.+++.++|+.+...|...++ .+.+.+||+||+|++|||+
T Consensus 73 ~~~-~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSR-EAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCH-HHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 873 23333344449999998888766553 2335789999999999996
No 130
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=8.2e-14 Score=101.34 Aligned_cols=108 Identities=26% Similarity=0.275 Sum_probs=75.5
Q ss_pred EEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce-eecCcceeEEEEEecc---
Q 022851 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD--- 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~d--- 232 (291)
+.|.|+|++++.+||+++|||++.... ..+..+... + +..+.+........ ....++..|++|.++|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 578999999999999999999966432 123332221 2 23455543322111 1123467899999986
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++++++++ +++|+++..+|...++ ++.++|+||+||+|||+
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 55566666 9999999988877766 37899999999999997
No 131
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.56 E-value=1.9e-13 Score=99.14 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=73.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEE--EEE
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF--AIA 99 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i--~~~ 99 (291)
++|+||.|.|+|++++.+||+ .|||++..+.+ ...+...+.. ...+.+.... ..++.|+ .+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGND--HRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCCC--ceEEEeecCC-------CCceeeEEEEeE
Confidence 478999999999999999997 69999865421 1222222222 2223232211 1234444 455
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++|+++++++|.++|+++...+ .+++.. .++|.||+||+|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 6899999999999999987654 223333 388999999999998654
No 132
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=9.7e-14 Score=102.13 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=77.4
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc------eeecCcceeEEE
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~h~~ 227 (291)
+.+|.|.|.|++++.+||+++|||++..+ .+..+ .++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998764 12222 33333222 233333221110 111234778999
Q ss_pred EEec--chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 228 ISTD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 228 ~~v~--di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|.++ |++++++++ .++|+++...+. .++ +++.+|++||+|++|||+++
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 9984 677777777 999998876554 233 45889999999999999863
No 133
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.55 E-value=7.7e-14 Score=100.67 Aligned_cols=95 Identities=25% Similarity=0.304 Sum_probs=74.7
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcc--cCCCCeeEEEEEeCC
Q 022851 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHFAIATED 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~~~v~d 102 (291)
+||+|.|+|++++++||+++||++.......+.......++..+++. ..+++.++....++ ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988776666666677777766533 45565554333222 267799999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 022851 103 VYKLVENIRAKGGNVTREP 121 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~ 121 (291)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987654
No 134
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.55 E-value=1.1e-13 Score=101.66 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=76.0
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhh
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
...|.|.|++++.+||++ |||++...... .+..+..+ +..+.|....... ......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 457899999999999999 99997654321 23333322 3455665422111 12234689999999999
Q ss_pred hHHHHHHHHHHhCCeee-------cCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 236 SAEVVNLVTQELGGKIT-------RQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~-------~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+++++ +++|+++. .+|...++ +.+.++|+|||||+|+|.|.
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 99999 99999743 33443445 46899999999999999874
No 135
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=1.5e-13 Score=100.93 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=76.0
Q ss_pred eeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecc--
Q 022851 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD-- 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d-- 232 (291)
.|+.|.|+|++++.+||+++||++..... +. +..+... . ....+.+..+... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~---~~-~~~~~~~--~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR---DD-YAKFLLE--D--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc---CC-eeEEEec--C--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 59999999999999999999999875442 11 2222222 1 1233333321111 11578899999988
Q ss_pred -hhhhHHHHHHHHHHhCCeeecCCcccC-CCCceEEEEECCCCCeEEEeech
Q 022851 233 -VYKSAEVVNLVTQELGGKITRQPGSIP-GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~p~~~~-~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+++..+++ .++|+++...|.... +..++.+|++||+|++|||+++.
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 45555555 999999887765433 22247899999999999999754
No 136
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=7.9e-14 Score=103.08 Aligned_cols=112 Identities=23% Similarity=0.215 Sum_probs=74.4
Q ss_pred eeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCc------ce-eecCcceeEEE
Q 022851 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TE-YTKGNAYAQVA 227 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~-~~~~~~~~h~~ 227 (291)
.+++|.|.|++++++||++ |||++.......+ ...+... + ...+.+...... .. .+.+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5899999999999999976 9998664322221 1122111 1 234444332100 00 01234567999
Q ss_pred EEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 228 ISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
|.|++ ++++++++ +++|++++.+|...++ ++.+||+|||||+|||+-
T Consensus 74 f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99985 55666666 9999999888876665 478999999999999974
No 137
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=2.7e-13 Score=99.54 Aligned_cols=112 Identities=24% Similarity=0.398 Sum_probs=77.3
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCC--
Q 022851 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 25 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d-- 102 (291)
.|+.|.|+|++++.+||+++|||+...+.+ + ...+ ..++.. +.+.+..+... ...+..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~-~~~~~~--~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKF-LLEDPR--LNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEE-EecCCc--eEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998765532 1 1222 222222 22333222111 11478899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCC-CceEEEEEECCCCCEEEEEeCC
Q 022851 103 -VYKLVENIRAKGGNVTREPGPLKG-GTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++++++++.++|+++...+....+ +....++++||+|++|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 788999999999998766543321 1223588999999999999754
No 138
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.54 E-value=1.5e-13 Score=101.28 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=75.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeecc---CCCCcccCCCCeeEEEEEe
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN---YGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~g~~~i~~~v 100 (291)
++||+|.|+|++++++||++ |||++....... ..+.+..++ ...+.+..... ........+.+..+++|.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPG-GVRLAWDTVESIRSFTPGWTPTGGHRIALAFLC 74 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCC-CEEEEEEcccceeeecCCCCCCCCCcEEEEEEc
Confidence 57999999999999999975 999975432211 122333321 22222211100 0000001223456788876
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
. |+++++++|+++|+++..+|...++|.+ .++++||+||+|+|+
T Consensus 75 ~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iel~ 121 (122)
T cd07235 75 ETPAEVDALYAELVGAGYPGHKEPWDAPWGQR-YAIVKDPDGNLVDLF 121 (122)
T ss_pred CCHHHHHHHHHHHHHCCCCcCCCCccCCCCCE-EEEEECCCCCEEEEe
Confidence 4 8999999999999998888877777665 488999999999986
No 139
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.54 E-value=1e-13 Score=99.65 Aligned_cols=112 Identities=29% Similarity=0.391 Sum_probs=82.4
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhh
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
|+.+.|.|++++.+||+++|||+......... ....++..+ +..+.+....+......+++..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78999999999999999999999776643211 233444422 356666654433211235678999999999988
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022851 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
..+++ .+.|+.+..++....+ +.+.+|+.||+|+.|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 88888 9999998877752223 46999999999999986
No 140
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.54 E-value=2.9e-13 Score=97.21 Aligned_cols=112 Identities=31% Similarity=0.449 Sum_probs=80.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHH
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
|+.+.|+|++++.+||+++|||+....... ......++..+ . ..+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~--~--~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG--G--TRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC--C--ceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998877542 11234445443 2 23444432222111345578999999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022851 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
++++|.++|+.+...+....++.. .+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGR-VAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcE-EEEEECCCCcEEeC
Confidence 999999999998877653333344 48999999999985
No 141
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.54 E-value=1.8e-13 Score=100.77 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=74.3
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeec-----CcceeecCcceeEEEE
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-----GVTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~~~~~~h~~~ 228 (291)
+.||+|.|.|++++.+||+. |||++...... ..+ ..+..+. +..+.+.... .+.....+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPH--VEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCc--EEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99986533211 011 1122111 1223221110 0000012235568888
Q ss_pred Eec---chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 229 STD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
.+. |++++++++ +++|+++..+|...++ |.+.++++||+||+|||+
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 875 678888887 9999999888877776 458899999999999996
No 142
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.53 E-value=3.6e-13 Score=97.44 Aligned_cols=109 Identities=28% Similarity=0.412 Sum_probs=77.4
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHHH
Q 022851 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~ 107 (291)
.|.|+|++++++||+++|||+...... .. ...++..+ ...+ .+.......+. ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~~~~--~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--GAQL--MLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--CEEE--EEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999877643 11 23444432 2223 33322211111 2345668999999999999
Q ss_pred HHHHHcCCe-eecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 108 ENIRAKGGN-VTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 108 ~~l~~~G~~-~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++.++|+. +..++...+++.. .++++||+|+.|+|++
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 999999998 5666666666544 4889999999999975
No 143
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.53 E-value=2.6e-13 Score=100.24 Aligned_cols=113 Identities=26% Similarity=0.359 Sum_probs=72.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccC-C---CCcc-cCCCCeeEEE--E
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY-G---VTSY-DIGTGFGHFA--I 98 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~---~~~~-~~~~g~~~i~--~ 98 (291)
||+|.|+|++++++||+++|||++..... ....+..++. .+.+.+.... . .... ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFGH--QLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccCc--EEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999865421 1122222221 2222222111 0 0010 1122455664 5
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCC---CceEEEEEECCCCCEEEEEe
Q 022851 99 ATEDVYKLVENIRAKGGNVTREPGPLKG---GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~dp~G~~iel~~ 146 (291)
.++|+++++++|+++|+++...|..... +....++++|||||+|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6789999999999999998876653221 22345899999999999874
No 144
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=4.6e-13 Score=97.37 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=76.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCc-ccCCCCeeEEEEEeCC---
Q 022851 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED--- 102 (291)
Q Consensus 27 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~~~v~d--- 102 (291)
+.|.|+|++++++||+++|||++..... . ...+..++ .. .+.+.......+ .....+..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~--~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----T--FALFVLGS-GV--KLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----c--eEEEEeCC-Cc--EEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999765421 1 22333322 22 233333222111 1123467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
++++++++.++|+++...|...++|. .++|+||+||+|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88899999999999988887777663 378999999999986
No 145
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.52 E-value=4.5e-13 Score=113.56 Aligned_cols=119 Identities=21% Similarity=0.349 Sum_probs=82.6
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCC--C-ceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE--E-KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i 96 (291)
.+.+|+||.|.|+|++++.+||+++|||++..+...+. + .....++..++... .+.+... ....+++|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHH--SLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcc--eEEEecC------CCCCceEEE
Confidence 36899999999999999999999999999876532211 1 11245555433222 1222111 123479999
Q ss_pred EEEeCCHHH---HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 97 AIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+|.|+|+++ ++++|+++|+ ....+...+.+...++|++||+|+++|+...
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 999988776 7999999999 4444443333345568999999999999874
No 146
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.51 E-value=1.8e-13 Score=101.13 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=72.1
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc----e-eecCcceeEEE--E
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----E-YTKGNAYAQVA--I 228 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~-~~~~~~~~h~~--~ 228 (291)
|+.|.|+|++++++||+++|||++..... .+..+...+ ....+.+....... . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999754321 111122111 12222222111000 0 01112455665 4
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccC---CCCceEEEEECCCCCeEEEee
Q 022851 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIP---GLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~---~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.++|++++++++ +++|+++..+|.... .++++.+|++|||||+|||..
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 567888888888 999999987775421 123588999999999999974
No 147
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.51 E-value=4.1e-13 Score=97.40 Aligned_cols=105 Identities=22% Similarity=0.231 Sum_probs=71.6
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeE--EEEEe
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ--VAIST 230 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h--~~~~v 230 (291)
.+.|+.|.|.|++++.+||+ +|||++.... + . ..+...+. .+..+.+... ...+..| +.+.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~-~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--G-LELRTAGN--DHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--c-eEEEecCC--CceEEEeecC-------CCCceeeEEEEeEh
Confidence 68999999999999999997 6999976432 1 1 22222111 2334444321 1223444 45556
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+|++++++++ +++|+++...+ .+. +.+.+||.||+||+|||..
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~--~~~-~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAP--PGA-DPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCC--CcC-CCCEEEEECCCCCEEEEec
Confidence 8888888888 99999987665 222 2367999999999999985
No 148
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.51 E-value=1.3e-13 Score=99.40 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=76.6
Q ss_pred eeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce--eecCcceeEEEEEecc
Q 022851 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~~v~d 232 (291)
+||+|.|+|++++.+||+++||+.+.........+....++..+++ ...+||+++.+... ...+.+++|+||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999999999999999999999997766655555666766664432 27899998776653 2367899999999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCC
Q 022851 233 VYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p 255 (291)
++++++++ +++|++++..+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 99999987764
No 149
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.51 E-value=6.5e-13 Score=97.55 Aligned_cols=108 Identities=22% Similarity=0.202 Sum_probs=74.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHH
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
...|.|+|++++++||++ |||+...+... ..+++..++ . .+.+....... ......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~--~--~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGD--L--ELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCC--E--EEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 467999999999999999 99998765431 134444332 2 23333221111 11233578999999999
Q ss_pred HHHHHHHcCCeee-------cCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 106 LVENIRAKGGNVT-------REPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++|+++|+++. ..+...++|.+ .++|+||+||+|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMR-EFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCcee-EEEEECCCCCEEEeecC
Confidence 9999999999743 23344445554 48999999999999874
No 150
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=94.16 Aligned_cols=121 Identities=25% Similarity=0.283 Sum_probs=86.7
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022851 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
+...+.|..|.+.|++++.+||+++|||++....+... ...+.+..+.....=.+. . ......+.+...+.|.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~--~---~~~~~p~~~~~~iy~~ 78 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLM--A---RPGSPPGGGGWVIYFA 78 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceec--c---CCcCCCCCCCEEEEEe
Confidence 45678999999999999999999999999876644322 233333222211100010 0 0111122355788899
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+|+++..+|.+++|.+++.++.+.+++++. +.+.||+||+|.|++..
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~G~~-a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGGGRI-AHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCceEE-EEEECCCCCEEEEeecC
Confidence 9999999999999999999999999976654 89999999999998753
No 151
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=7.1e-13 Score=97.93 Aligned_cols=113 Identities=21% Similarity=0.224 Sum_probs=75.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccC------CCCcc-cCCCCeeEE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY------GVTSY-DIGTGFGHF 96 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~-~~~~g~~~i 96 (291)
+.++.|.|+|++++++||++ |||+.......++ ...+..++ ... +.+.... ..... ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~-~~~--l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD-NIF--VMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC-ceE--EEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 36899999999999999987 8999865333221 12233332 222 2222110 00000 122346799
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 97 AIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|.|+ |+++++++++++|+++..+|...++ .+ .++|+|||||+|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~-~~-~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGF-MY-GRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc-eE-EEEEECCCCCEEEEEE
Confidence 99997 5889999999999999887766664 33 3789999999999974
No 152
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=5.6e-13 Score=96.83 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=72.4
Q ss_pred EEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhhh
Q 022851 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~ 236 (291)
..|.|+|++++.+||++ |||++.... ..+ .++..+ +..+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~--~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNL--AYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCE--EEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 45789999999999987 999987653 122 333422 233444321111 112345799999999999
Q ss_pred HHHHHHHHHHhCCeee-----cCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 237 AEVVNLVTQELGGKIT-----RQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~-----~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
++++ +++|+++. .+|...++ |++.++|+|||||+|+|.|
T Consensus 70 ~~~l----~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHI----KALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHH----HHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 9999 99998743 34444445 4699999999999999975
No 153
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=6.8e-13 Score=97.37 Aligned_cols=110 Identities=25% Similarity=0.246 Sum_probs=74.6
Q ss_pred EEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCc------ceeecCcceeEEEEEe
Q 022851 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TEYTKGNAYAQVAIST 230 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~~~~~~~~h~~~~v 230 (291)
|.|.|.|++++.+||+++|||++.... +..+ .++..+ +..+.+...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999976541 1222 233321 344555432110 0011222344566665
Q ss_pred ---cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 231 ---DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ---~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+|++++++++ ++.|+++..+|...++ +++.+|++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 5677777777 9999999888876665 4689999999999999975
No 154
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.44 E-value=2.6e-12 Score=94.27 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=74.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccC------CCCcccCCCCeeEEEEEe
Q 022851 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY------GVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 27 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~g~~~i~~~v 100 (291)
|.|.|+|++++.+||+++|||++..+. .. ...++..++ ..+.+.... .......+.+..++++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 11 133444332 223332211 111111222334455554
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 101 ---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|++++++++.++|+++..++...++|... ++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGYS-GYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCceE-EEEECCCCCEEEEee
Confidence 689999999999999998777766665544 889999999999875
No 155
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.3e-12 Score=95.46 Aligned_cols=125 Identities=34% Similarity=0.510 Sum_probs=82.4
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecC---------CCC------ceeEEEeeccCCCC
Q 022851 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG---------PEQ------SHFVVELTYNYGVT 85 (291)
Q Consensus 21 ~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g---------~~~------~~~~~~~~~~~~~~ 85 (291)
-..+.|.++.++|+.++..||++++|+.++.+...+.-.....+++.. +.. ..-.+++.++.+..
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 455689999999999999999999999887654433221111212110 000 00124555543321
Q ss_pred -----ccc----CCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 86 -----SYD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 -----~~~----~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
.+. .+.|.+||||.|+|+.++.++|++.|+++...+.+..- ...+++.||||+.|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc--cceeEEECCCCCeEEEeec
Confidence 121 22489999999999999999999999997665444332 1358899999999998765
No 156
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=2.8e-12 Score=93.10 Aligned_cols=104 Identities=20% Similarity=0.291 Sum_probs=71.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHH
Q 022851 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (291)
Q Consensus 27 v~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~ 106 (291)
..|.|+|++++.+||++ |||++....+ ...++..++ ..+.+...... . ..+-.+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~~l~l~~~~~~---~---~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--CAFYLQDYYVK---D---WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--EEEEeecCCCc---c---cccCCEEEEEECCHHHH
Confidence 46889999999999988 9999976532 134555442 22323211111 1 11234789999999999
Q ss_pred HHHHHHcCCeee-----cCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 107 VENIRAKGGNVT-----REPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 107 ~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++|+++|+.+. ..+...++|.+ .++|+|||||+++|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r-~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGR-EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcE-EEEEECCCccEEEeeC
Confidence 999999998743 23334455554 4999999999999864
No 157
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=6.8e-12 Score=91.83 Aligned_cols=117 Identities=26% Similarity=0.365 Sum_probs=74.5
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce-----eecC----ccee
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-----YTKG----NAYA 224 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-----~~~~----~~~~ 224 (291)
+.|+.|.+++.-+...||...||+.+.+.++.+.....++... ....++|+.+++... +..+ .|.+
T Consensus 43 ~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~-----~~~~~ELthn~Gtes~~~~~~~ngN~~prGfg 117 (170)
T KOG2944|consen 43 VNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFS-----RNAKLELTHNWGTESPPDQAYLNGNKEPRGFG 117 (170)
T ss_pred hccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEec-----ccCceeeecCCCCCCCcchhhcCCCCCCCccc
Confidence 3444455555555555555555554433333222222222211 146788888776653 1222 2899
Q ss_pred EEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 225 h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
||||.|+||++++.++ ++.|+++...|....- -.++|+.||||+.|||..+
T Consensus 118 HIci~V~di~sac~~l----kekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 118 HICIEVDDINSACERL----KEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred eEEEEeCCHHHHHHHH----HHhCceeeecCCCccc--cceeEEECCCCCeEEEeec
Confidence 9999999999999999 9999998777654211 1679999999999999865
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.33 E-value=2.1e-11 Score=96.76 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=73.0
Q ss_pred ceeeeEEEEEeC--CHHHHHHHHHHhcCCEEEeeeecCC--CceeEEEeecCCCCceeEEEeeccCC--C-C---c---c
Q 022851 21 KRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYG--V-T---S---Y 87 (291)
Q Consensus 21 ~~~l~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~--~-~---~---~ 87 (291)
+.+++||++.|+ |++++++||+++|||+.......++ .+.....+..+++ .+.+++..+.. . . . .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g--~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDG--KIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCC--cEEEEEecCCCCCCccHHHHHHHH
Confidence 468999999999 9999999999999999887765433 2333444443332 34445543322 1 1 1 1
Q ss_pred cCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 022851 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|+|++||||.|+|+++++++|+++|+.+...|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24789999999999999999999999999877654
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.27 E-value=3.3e-11 Score=95.61 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=73.9
Q ss_pred CCceeEEeeeC--CchhhHHHHHHhhCCeeeeecccCC--cceeEEEecccCCCceeEEEEeeecCc--ce-------ee
Q 022851 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV--TE-------YT 218 (291)
Q Consensus 152 ~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~~-------~~ 218 (291)
..++|+++.|+ |++++.+||+++|||+........+ .......+..+ .....++|..+... .+ .+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 35899999999 9999999999999999877654433 22333444422 23567777654431 11 22
Q ss_pred cCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCc
Q 022851 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 219 ~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.|+|++|+||.|+|++++++++ +++|++++..|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4789999999999999999999 999999988873
No 160
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.23 E-value=2.2e-10 Score=79.14 Aligned_cols=119 Identities=29% Similarity=0.310 Sum_probs=77.2
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCC-c-ccCC--CCeeEE-
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-S-YDIG--TGFGHF- 96 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~--~g~~~i- 96 (291)
..+-|+.|.|+|++++.+||.++||++.-.+.+ ++.-+.+ ....+...+....... . ...+ -.+.|+
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDf--yGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDF--YGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeee--cccEEEEEecCCcccccCcccCCCCCCCccce
Confidence 345799999999999999999999998644432 1222222 1112222222211111 1 1112 224555
Q ss_pred -EEEeCCHHHHHHHHHHcCCeeecCCeecC---CCceEEEEEECCCCCEEEEEeCC
Q 022851 97 -AIATEDVYKLVENIRAKGGNVTREPGPLK---GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 -~~~v~d~~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.+.++|.-++.+||+++|+....+|+-.. -|..+.+++.||.||.+|+---.
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 46678999999999999999877776432 25566788999999999987544
No 161
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.16 E-value=7.7e-10 Score=88.98 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=86.1
Q ss_pred CCCCCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc-eeecCcceeEEE
Q 022851 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-EYTKGNAYAQVA 227 (291)
Q Consensus 149 ~~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~~~h~~ 227 (291)
..+..+..|.|.|+|++++..||++++|+++..+... ...+..++ ...+.|.+..+.. +.+...|..|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC---EEEEEEEeCCCCCCCCccccceeeee
Confidence 3456788999999999999999999999998876432 12233222 3566665533322 234667999999
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|.+++-.+..+.+ .++.+.|+.+. +...+.. .-.+||.||+||-||+..+.+
T Consensus 77 fLlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 77 FLLPTREDLARVL-NHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred eecCCHHHHHHHH-HHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 9999844333333 55588898875 4455444 378999999999999998755
No 162
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.15 E-value=4.3e-10 Score=98.02 Aligned_cols=104 Identities=22% Similarity=0.351 Sum_probs=73.7
Q ss_pred CCCCceeeeEEEEEeC--CHHHHHHHHHHhcCCEEEeeeecCCC--ceeEEEeecCCCCceeEEEeeccC---CC---C-
Q 022851 17 PKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNY---GV---T- 85 (291)
Q Consensus 17 ~~~~~~~l~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~---~~---~- 85 (291)
+.+.+.+++||++.|+ |+++++.||+++|||+...+.+.... ......+...++ .+.+++..+. .. .
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g--~~~i~L~ep~~~~~~s~i~~ 229 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDG--KVKIPLNEPASGKDKSQIEE 229 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCC--cEEEEEeccCCCCCCCHHHH
Confidence 3456899999999999 99999999999999999876654321 221122222222 2445554421 11 1
Q ss_pred --cccCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 022851 86 --SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 86 --~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
....|.|+.||||.|+|+++++++|+++|+.+...|.
T Consensus 230 fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 230 FLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 1224789999999999999999999999999887653
No 163
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.09 E-value=2.9e-09 Score=78.97 Aligned_cols=114 Identities=14% Similarity=0.034 Sum_probs=70.7
Q ss_pred Eeee-CCchhhHHHHHHhhCCeeeeecccC----------CcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEE
Q 022851 158 MLRV-GDLGRSIKFYEKALGMKLLRTVDKP----------EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 158 ~l~v-~D~~~~~~Fy~~~lG~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (291)
.|.+ .|.+++++||+++||+++....... ++.+.-..+..+ +..+-+....+.... .+++..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4667 8999999999999999987654321 111122222221 223333322221111 12345679
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++.|+|+++ +++++++|.+.| +++.+|...++ |.+.++++||+|+.|+|.
T Consensus 79 ~i~~~~~e~-v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEE-ADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHH-HHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 999988433 334344446544 88888888877 468999999999999984
No 164
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.05 E-value=3.6e-09 Score=82.94 Aligned_cols=150 Identities=22% Similarity=0.330 Sum_probs=83.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCC---Cc-c-----cCCCCee
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV---TS-Y-----DIGTGFG 94 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~-~-----~~~~g~~ 94 (291)
|+|+.+.|+|++++.++|++.|||++......+..+.....+.+++...+++- +.+.... .. + ..+.|+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~-i~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIA-IDPEAPAPDRGRWFGLDRLAGGEGLY 79 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEE-ES-HHHSTGGGT-TTTHHHHT--EEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEE-eCCcccccccccceechhhcCCCCeE
Confidence 68999999999999999988899999988887765666666766654322222 2111111 11 1 1467999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCce--EEEEEECC----CCCEEEEEeCCCC----------CCCceeEE
Q 022851 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTT--HIAFVKDP----DGYIFELIQRGPT----------PEPLCQVM 158 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~--~~~~~~dp----~G~~iel~~~~~~----------~~~~~hv~ 158 (291)
.+|+.++|+++..++|.+.|+..... ....++.. ..+++.++ .+..-.+++.... ...|.+|.
T Consensus 80 ~~~l~t~d~~~~~~~l~~~G~~~~~r-~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~~v~ 158 (175)
T PF13468_consen 80 GWALRTDDIEAVAARLRAAGLDAGSR-VRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGITRVV 158 (175)
T ss_dssp EEEEE-S-HHHHHHHHHTTT-EEEEE-EEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHhcCCCCCCc-CcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEEEEE
Confidence 99999999999999999999862221 12222222 22444553 2455555643321 13589999
Q ss_pred eeeCCchhhHHHHHHhh
Q 022851 159 LRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 159 l~v~D~~~~~~Fy~~~l 175 (291)
+.++|++++.++|.++|
T Consensus 159 i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 159 IAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEETTHHHHHHHHHHH-
T ss_pred EEeCCHHHHHHHHHhhC
Confidence 99999999999999875
No 165
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.04 E-value=4.4e-09 Score=72.74 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=73.2
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcce--eecC----cceeEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKG----NAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~----~~~~h~ 226 (291)
.+.|+.+-|.|++++++||.++||...-...+ .++.++.=. ......+....+... ...+ ....-+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyG--HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYG--HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecc--cEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 46799999999999999999999998544321 222222110 112222211111100 0011 133346
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcc----cCCCCceEEEEECCCCCeEEEee
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGS----IPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~----~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.|.++|..+..+++ +++|+.+..+|.- .++ -++.+++.||.||.+|+-.
T Consensus 76 Vl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~g-Eq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 76 VLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPG-EQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEHHHHHHHHHHH----HHcCCCcccCceEEecCCcc-ceEEEEEECCCCCeeeeec
Confidence 67788888888888 9999998888854 233 3588999999999999854
No 166
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=4.8e-08 Score=71.91 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=86.3
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEEeeeecCC----------CceeEEEeecCCCCceeEEEeeccCCCCcccCCC-Cee
Q 022851 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRDVPE----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT-GFG 94 (291)
Q Consensus 27 v~l~v~-d~~~~~~fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-g~~ 94 (291)
..|..+ |.++|++||+++||.+.+.+...++ +...++.+.+++. .+.+ ....+......+. --.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~--~im~--sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS--TIML--SDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE--EEEE--ecCCCccCcccCCCeeE
Confidence 457788 9999999999999999998877666 5666666666532 1222 1111111111222 235
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC
Q 022851 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
.|.+.+.|++++++++.+.|+++..+..+..+|.+ +..++||.|+.|-|.....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r-~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDR-YGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccc-eEEEECCCCCEEEEecCcc
Confidence 56778889999999999999999999999999876 4889999999999877653
No 167
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.97 E-value=4.2e-08 Score=72.74 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=73.0
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCEEEeeeec----------CCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeE
Q 022851 27 AVYRV-GDLDRTIKFYTECFGMKLLRKRDV----------PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 27 v~l~v-~d~~~~~~fy~~~lG~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
..|.+ .|.+++++||+++||+++...... ..+....+.+.+++. .+.+ .......... +.+-.+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~--~l~~--~d~~~~~~~~-~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ--RLMA--SDGGPGFPFT-FGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE--EEEE--EcCCCCCCCC-CCCCEE
Confidence 35667 899999999999999998876532 112334444555432 2222 1111111111 223457
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022851 96 FAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 96 i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+++.|+| +++++++|.+.| ++..++...++|.+. +.++||.|+.|+|
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 8888876 778889987766 888777777877654 8899999999987
No 168
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.96 E-value=2.6e-08 Score=73.31 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=80.5
Q ss_pred EeeeC-CchhhHHHHHHhhCCeeeeecccCC----------cceeEEEecccCCCceeEEEEeeecCcceeec-CcceeE
Q 022851 158 MLRVG-DLGRSIKFYEKALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK-GNAYAQ 225 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~h 225 (291)
-|... |.+++++||+++||.++..+....+ +...-..+..+ +..|-+....+...... ++...-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 36677 9999999999999999887765554 22222222221 23333333232222222 334456
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+.+.++|+++..+++ .+.|++++.++....+ |.++..++||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a----~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERA----AAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHH----HhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 777888877777777 9999999999998888 4699999999999999987553
No 169
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.95 E-value=3.4e-09 Score=92.06 Aligned_cols=101 Identities=21% Similarity=0.357 Sum_probs=73.3
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCC-----ceeEEEeecCCCCceeEEEeeccC-------CCCc
Q 022851 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----KYSNAFLGFGPEQSHFVVELTYNY-------GVTS 86 (291)
Q Consensus 19 ~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~ 86 (291)
..+.+|+||++.|++++.++.||+++|||+.....+.++. +.....+..+++ .+.+++..+. ....
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g--~v~ipLnEP~~~~~~~SqI~e 253 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNE--MVLLPLNEPTFGTKRKSQIQT 253 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCC--cEEEEeccCCCCCCCcChHHH
Confidence 3588999999999999999999999999998865543221 234444444333 2345554432 1122
Q ss_pred c---cCCCCeeEEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 022851 87 Y---DIGTGFGHFAIATEDVYKLVENIRAK----GGNVTREP 121 (291)
Q Consensus 87 ~---~~~~g~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 121 (291)
| ..|+|++||||.|+|+.++.++|+++ |+.++..|
T Consensus 254 FL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 254 YLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 2 25789999999999999999999999 99887654
No 170
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.95 E-value=4.7e-09 Score=77.67 Aligned_cols=122 Identities=24% Similarity=0.283 Sum_probs=73.6
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcc---eeEEEecccCC--CceeEE------EEeeecCcc-eeec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK---YTLAMLGYAEE--DQTTVL------ELTYNYGVT-EYTK 219 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~l------~l~~~~~~~-~~~~ 219 (291)
+.+.|++|.|+|++++.+||+++||+++.......... ....+...... ...... ......... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 36889999999999999999999999988765432221 11222221000 000000 000000000 0111
Q ss_pred C-cceeEEEEEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 220 G-NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 220 ~-~~~~h~~~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+ .+..|+++.+++ +....... ...|..+...+. ..+ +..+|++||||+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 1 247899999998 55666666 777888766554 323 248999999999999974
No 171
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.90 E-value=6e-09 Score=77.08 Aligned_cols=122 Identities=22% Similarity=0.383 Sum_probs=73.4
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCce--eEEEeecCCC-CceeEEEe--------eccCCCC-cccC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY--SNAFLGFGPE-QSHFVVEL--------TYNYGVT-SYDI 89 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~--~~~~~~~g~~-~~~~~~~~--------~~~~~~~-~~~~ 89 (291)
++++|+++.|+|++++.+||+++||++............ .......... ........ ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 468999999999999999999999999988754332211 1111111110 00000000 0000000 0011
Q ss_pred C-CCeeEEEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEe
Q 022851 90 G-TGFGHFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 90 ~-~g~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+ .+..|+++.+.+ .......+...|..+..... ...+. .+|++||||+.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 247799999988 66667777888888655433 22222 5899999999999863
No 172
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.89 E-value=2e-08 Score=74.33 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=84.1
Q ss_pred CCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcc--cCCCCee
Q 022851 17 PKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFG 94 (291)
Q Consensus 17 ~~~~~~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~g~~ 94 (291)
++..+.++.||.+.+++.+++..+++ .|||+.+.+-... ....++. +.+.+++.-.+......+ .+|++++
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQ--G~I~~vln~ep~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQ--GDINFVLNSEPDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEE--TTEEEEEEEESTSCHHHHHHHHSSEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEe--CCEEEEEeCCCcchHHHHHHhcCCEEE
Confidence 35678999999999999888888885 5999998874322 2333443 356666654333322222 2789999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCCC
Q 022851 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPE 152 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~ 152 (291)
.|+|.|+|.+++++++.++|++....+... +...+.-++.++|.++.|+++.....
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~~~ 131 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGDKG 131 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SSS-
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCCCC
Confidence 999999999999999999999977664322 33445779999999999999865433
No 173
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.88 E-value=1.4e-07 Score=66.28 Aligned_cols=115 Identities=23% Similarity=0.314 Sum_probs=66.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCH
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~ 103 (291)
+.+-.|.|+|.+..++||++.|||++..+.. ..++++.......++++-++............++++.+.|++.
T Consensus 1 f~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~ 74 (125)
T PF14506_consen 1 FIIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNP 74 (125)
T ss_dssp -EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSH
T ss_pred CcCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCH
Confidence 3567899999999999999999999998865 3677776555667888776654433333444789999999987
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.+. +.|.++|.++..- .... .++. +-+.+|+|..|.+....
T Consensus 75 ~EI-e~LLar~~~~~~l-~kg~-~gyA-fe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 75 KEI-EALLARGAQYDRL-YKGK-NGYA-FEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHH-HHHHHC-S--SEE-EE-S-SSEE-EEEE-TT--EEEEE--S
T ss_pred HHH-HHHHhccccccee-EEcC-CceE-EEEECCCCCEEEEEEcC
Confidence 764 4455555553322 2222 2333 34679999999887654
No 174
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.80 E-value=1.7e-07 Score=66.19 Aligned_cols=117 Identities=23% Similarity=0.229 Sum_probs=72.6
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeec-----C--cceeecCcceeE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-----G--VTEYTKGNAYAQ 225 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~--~~~~~~~~~~~h 225 (291)
....|+|.|.|++++.+||+. |||+.-+...... ...+.- .+ ...+-|..+. - +........-..
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~--~~--ni~vMLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMII--SD--NIFVMLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEE--ec--cEEEEEeccHHhhhhcccccccccCCceEE
Confidence 456899999999999999977 9998654432221 111111 11 1222221110 0 001123345567
Q ss_pred EEEEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 226 VAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 226 ~~~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
++|.+.+ +++.+++. .++|++...+|..... .+-.-|.|||||.||++--++
T Consensus 75 i~ls~~s~eevd~~v~ka----~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 75 ISLSAGSREEVDELVDKA----LEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEeccCcHHHHHHHHHHH----HHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeCH
Confidence 8898876 55555565 9999998777655433 355779999999999987555
No 175
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.73 E-value=1.2e-07 Score=67.01 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=71.7
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEE-Eeec-c----CCCCcccCCCCeeE
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVV-ELTY-N----YGVTSYDIGTGFGH 95 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-~----~~~~~~~~~~g~~~ 95 (291)
.+.-.|.|.|+|++++..||+. |||+.-....... ..+.+- + .++...+ +-.. . ..... .....-.-
T Consensus 2 ~~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~-~-~ni~vMLL~~~~fq~F~~~~i~d-t~~s~evl 74 (133)
T COG3607 2 TQMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMII-S-DNIFVMLLEEARFQTFTKRQIAD-TTKSREVL 74 (133)
T ss_pred ceEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEE-e-ccEEEEEeccHHhhhhccccccc-ccCCceEE
Confidence 3456899999999999999987 9999855433221 222222 1 2222222 1110 0 01100 01223345
Q ss_pred EEEEeC---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 96 FAIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+|+.+. +++++.+++.++|.+...++.+... -+. ..|.|||||.||++-=
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf-MYg-~~fqDpDGh~wE~l~m 127 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDEGF-MYG-RSFQDPDGHVWEFLWM 127 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCcccccc-ccc-eeeeCCCCCeEEEEEe
Confidence 677774 5888999999999998776655442 222 5589999999999753
No 176
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.59 E-value=8.3e-08 Score=78.50 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc--e-----eecCccee
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--E-----YTKGNAYA 224 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~-----~~~~~~~~ 224 (291)
.+++||.++|.|...+.+||+..|||++....+...+...+.......+ ...+.+.....+. . ..+|.+.-
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 4689999999999999999999999998765433222111111111121 2222222222221 1 12566888
Q ss_pred EEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCC--CCceEEEEECCCCCeEEEeechhhhh
Q 022851 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 225 h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~Dp~G~~iel~~~~~~~~ 286 (291)
.+||.|+|.+++...+ .++|+.++.+|.+... +.-+++.+..+.-....+++++.+.+
T Consensus 94 dvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g 153 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKG 153 (381)
T ss_pred ceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccc
Confidence 9999999999999999 9999999999877433 22477888888777777777765543
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.50 E-value=1.4e-06 Score=73.45 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=68.1
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.+..||+|.|.|+++|.+||+++|++.. .. ++. ...+ . . .-..+-+.. +. .....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~-a~cm-~--d--tI~vMllt~--~D---~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK-LFLL-G--K--TSLYLQQTK--AE---KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc-cccc-c--C--cEEEEEecC--CC---CCCcceEEEEeccC
Confidence 4578999999999999999999988874 21 111 1121 1 1 112222222 11 12335567899998
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+ .+.++.+-++..++|++...+|..+.. .--|.||||+.||++=
T Consensus 310 S-re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 C-EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred C-HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 7 444444444449999976555544322 4558999999999973
No 178
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.47 E-value=1.9e-06 Score=72.62 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=69.5
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+.-||.|.|+|++++.+||+++|++.. ...+ . . +.+ ++ .. +.+-+.+. .. ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~-a-~cm--~d-tI-~vMllt~~-D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----K-L-FLL--GK-TS-LYLQQTKA-EK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----c-c-ccc--cC-cE-EEEEecCC-CC----CCcceEEEEeccC
Confidence 3456999999999999999999988874 2221 1 1 112 22 22 22222222 11 1123345678876
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeC
Q 022851 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+++++.+++.++|.+...++.+.+. . --|.|||||.||++-.
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~---rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP-L---RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC-c---ceeECCCCCEEEEEEE
Confidence 4888999999999987666666554 2 3489999999999854
No 179
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.45 E-value=7.7e-07 Score=74.34 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=72.9
Q ss_pred CceeeeEEEEEeC--CHHHHHHHHHHhcCCEEEeeeecCCC--c-eeEEEeecCCCCceeEEEeeccCCC----Ccc---
Q 022851 20 DKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--K-YSNAFLGFGPEQSHFVVELTYNYGV----TSY--- 87 (291)
Q Consensus 20 ~~~~l~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~----~~~--- 87 (291)
.+..|+|++.+|+ .++.+..||+++|+|+.+...+.++. + ...++ ...++ .+.+++...... ..+
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram-~Sp~G--~vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAM-VSPCG--KVRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeE-ecCCC--cEEeecccCCCchhHHHHHHHH
Confidence 4689999999887 89999999999999999988776543 1 12222 22223 344544432221 112
Q ss_pred cCCCCeeEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 022851 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|.|+.||+|.++|+-++.++|+++|++....|.
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 27889999999999999999999999999877554
No 180
>PRK10148 hypothetical protein; Provisional
Probab=98.33 E-value=2.4e-05 Score=59.26 Aligned_cols=115 Identities=16% Similarity=0.104 Sum_probs=70.7
Q ss_pred EeeeC-CchhhHHHHHHhhCCeeeeecc---cC-----------------CcceeEEEecccCCCceeEEEEeeecCcce
Q 022851 158 MLRVG-DLGRSIKFYEKALGMKLLRTVD---KP-----------------EYKYTLAMLGYAEEDQTTVLELTYNYGVTE 216 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 216 (291)
-|... |.+++.+||+++||.++..... .+ ++...-..+.++ +..|-+....+..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~~- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPSG- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCCc-
Confidence 45564 8999999999999987654431 00 111112222221 1222222111111
Q ss_pred eecCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeec
Q 022851 217 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.......++++.++|.+++ +++..+| +.|++++.++...++ +.++..++||.|+.|.|...
T Consensus 81 -~~~~~~~~l~l~~~d~ee~-~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 -KAHYSGFTLVLDTQDVEEG-KRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred -CCCCCeEEEEEECCCHHHH-HHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEec
Confidence 1111245788888886554 4444554 589999999988888 45899999999999999764
No 181
>PRK10148 hypothetical protein; Provisional
Probab=98.26 E-value=0.00014 Score=55.07 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=75.7
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEEeeee---c-----------------CCCceeEEEeecCCCCceeEEEeeccCCCC
Q 022851 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRD---V-----------------PEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85 (291)
Q Consensus 27 v~l~v~-d~~~~~~fy~~~lG~~~~~~~~---~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 85 (291)
..|..+ |.++|++||+++||.++..... . +++...++.+.+++. .+.+ ... ...
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~--~lm~--sD~-~~~ 79 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS--DIMM--SDA-IPS 79 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE--EEEE--ECC-CCC
Confidence 456665 8999999999999998865431 1 123444555666532 2222 111 111
Q ss_pred cccCCCCeeEEEEEeCCHHH---HHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCCCC
Q 022851 86 SYDIGTGFGHFAIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 86 ~~~~~~g~~~i~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~ 151 (291)
....+ .-.++++.++|.++ ++++| +.|.++..++.+.++|.+ +..++||-|+.|.|...+..+
T Consensus 80 ~~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~-~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 80 GKAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHG-FGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred cCCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhc-cEEEECCCCCEEEEEecCCCC
Confidence 11111 23467777788776 55555 688999998888888765 588999999999998765443
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.21 E-value=5e-05 Score=53.66 Aligned_cols=115 Identities=27% Similarity=0.378 Sum_probs=62.3
Q ss_pred eEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchhh
Q 022851 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
+-.|.|.|-+..++||+++|||++..... .+++++.........|+-..........+.--+.++.+.|++ .+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~-~~ 75 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN-PK 75 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESS-HH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCC-HH
Confidence 45789999999999999999999876532 233344222222333333221111111122377899999998 66
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
.++.+ .++|.++...-. +.+++.+-..+|.|.+|.|...++.
T Consensus 76 EIe~L----Lar~~~~~~l~k---g~~gyAfe~vSPEgd~~llhaEdd~ 117 (125)
T PF14506_consen 76 EIEAL----LARGAQYDRLYK---GKNGYAFEAVSPEGDRFLLHAEDDI 117 (125)
T ss_dssp HHHHH----HHC-S--SEEEE----SSSEEEEEE-TT--EEEEE--S-G
T ss_pred HHHHH----HhcccccceeEE---cCCceEEEEECCCCCEEEEEEcCCH
Confidence 77777 778866432211 2235777788999999999887654
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.09 E-value=8e-05 Score=55.28 Aligned_cols=117 Identities=19% Similarity=0.187 Sum_probs=75.6
Q ss_pred CceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcc-e---eecCcceeEEEE
Q 022851 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT-E---YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-~---~~~~~~~~h~~~ 228 (291)
.+.+|.+.+++.++...+++ .|||+...+....+ ..++ + .+ ...+.|....... . ..+|+++--++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~--v~l~--r--QG--~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD--VTLY--R--QG--DINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS--EEEE--E--ET--TEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc--eEEE--E--eC--CEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 57899999999888888885 59999887653322 2333 3 11 3344443322111 0 236889999999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechhh
Q 022851 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
.|+|..+++++. .+.|.+.+..|... + -..+.-++.+.|.++-|+++...
T Consensus 80 rV~Da~~A~~rA----~~~GA~~~~~~~~~-~-e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 80 RVDDAAAAYERA----VALGAEPVQEPTGP-G-ELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EES-HHHHHHHH----HHTT--EEEEEEET-T--BEEEEEE-CCC-EEEEEE--SS
T ss_pred EeCCHHHHHHHH----HHcCCcCcccCCCC-C-cEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999 99999988776432 2 13678899999999999998654
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.80 E-value=9.4e-05 Score=57.90 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=50.5
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcc--eeEEEecccCCCceeEEEEeeecCccee------------ec
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK--YTLAMLGYAEEDQTTVLELTYNYGVTEY------------TK 219 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~~~~~~------------~~ 219 (291)
|+|+.+.|+|++++.++|++.|||.+.....-+..+ -.++.+. + . .|||....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~--~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG--D---G-YLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S--S---S-EEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC--C---c-eEEEEEeCCcccccccccceechhhcC
Confidence 689999999999999999888999988765544322 2334343 2 3 7888764322211 13
Q ss_pred CcceeEEEEEecchhhhHHHHHHHHHHhCCe
Q 022851 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGK 250 (291)
Q Consensus 220 ~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~ 250 (291)
+.++.++||.++|++++.+++ .+.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 568999999999999999999 999975
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.65 E-value=0.12 Score=37.42 Aligned_cols=99 Identities=21% Similarity=0.196 Sum_probs=52.7
Q ss_pred CCchhhHHHHHHhhCCeeeee-cccCC------cceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEecchh
Q 022851 162 GDLGRSIKFYEKALGMKLLRT-VDKPE------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.+.+++.+||.++||-..... ...++ .......+... +..+-..... .....+++ ..+++.++| .
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~~-~sl~i~~~~-~ 82 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGNN-ISLCIECDD-E 82 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----TT-EEEEEEESS-H
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCCc-EEEEEEcCC-H
Confidence 689999999999999432221 11111 11111112211 1222222211 12223333 668899998 5
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEe
Q 022851 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
+.++++.+.|.+.|- +. + ++..++|.-|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 666777777676554 22 3 8899999999999885
No 186
>PF15067 FAM124: FAM124 family
Probab=96.15 E-value=0.074 Score=42.58 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=61.9
Q ss_pred eeeEEEEEeC--CHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeec-CCCCceeEEEeecc-CCCCcccCCCCeeEEEE
Q 022851 23 RFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF-GPEQSHFVVELTYN-YGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~l~hv~l~v~--d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~ 98 (291)
-+-.++|.|+ |.+.+.+||+-+|+-+...+... .+++.+ .+....+.+.+..- .+..+. ...-.-+.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~------FC~F~lys~~~~~iQlsLK~lp~~~~p~--p~esavLqF 199 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKED------FCFFTLYSQPGLDIQLSLKQLPPGMSPE--PTESAVLQF 199 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC------cEEEEEecCCCeEEEEEeccCCCCCCcc--cccceEEEE
Confidence 4556889999 99999999999999988655431 344433 33333344444221 111111 112345689
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022851 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
.|.|+..+...|-.--..+ ..+ + ....|||||.|-+
T Consensus 200 ~V~~igqLvpLLPnpc~PI-------S~~--r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPCSPI-------SET--R-WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCcccc-------cCC--c-ceeeCCCCCEecc
Confidence 9999988766554332211 112 2 4479999999843
No 187
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.05 E-value=0.019 Score=39.84 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec--
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD-- 231 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~-- 231 (291)
+..+.|+|+| +++..||.++||-... ..+.+.... +..+.+. +. .-=++-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~----G~DL~~~-~~------~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQ----GPDLTIE-NN------ETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGSS--TT------SBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeecc----CCccccC-CC------cEEeeEEEEEEecCc
Confidence 4578899999 8899999998872211 122222210 1111110 00 0015667888998
Q ss_pred -chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022851 232 -DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 232 -di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
|+.+...++ ++.+ +..+ + ..+++.++||++..|++
T Consensus 65 ~Dl~~L~~~l----e~~~--~fid-K-----k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHL----EEQE--FFID-K-----KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHT----TTS---EE---T-----T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHh----cccc--eEec-C-----CceEEEEECCcceEEEe
Confidence 344555555 6533 3222 2 24899999999999987
No 188
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.86 E-value=0.44 Score=34.40 Aligned_cols=101 Identities=20% Similarity=0.425 Sum_probs=54.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEe-eeecCC------CceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022851 26 HAVYRVGDLDRTIKFYTECFGMKLLR-KRDVPE------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 26 hv~l~v~d~~~~~~fy~~~lG~~~~~-~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
|+.+. .+-++|.+||.++||-..+. ....++ +....+.+.+++. .+.. ... . ..+..+++ .++++
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~--~lm~--~D~-~-~~~~~~~~-~sl~i 77 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ--KLMA--SDG-G-PDFPFGNN-ISLCI 77 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE--EEEE--EEE-S-TS----TT-EEEEE
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe--EEEE--ECC-C-CCCCCCCc-EEEEE
Confidence 34443 68999999999999854333 233222 2333444444322 1211 111 1 22233334 56778
Q ss_pred EeCC---HHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEE
Q 022851 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
..+| ++.++++|.+.|- + .. .+..+.|.-|..|.|+
T Consensus 78 ~~~~~ee~~~~f~~Ls~gG~---------~-~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 78 ECDDEEEIDRIFDKLSEGGQ---------W-FS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EESSHHHHHHHHHHHHTTTE---------T-CC-EEEEEE-TTS-EEEEE
T ss_pred EcCCHHHHHHHHHHHHcCCC---------c-cc-eeEEEEeCCCCEEEeC
Confidence 8776 4556778888774 2 23 4688999999998875
No 189
>PF15067 FAM124: FAM124 family
Probab=94.78 E-value=0.8 Score=36.85 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=62.9
Q ss_pred CCCCceeEEeeeC--CchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecC-cceeecCcceeEE
Q 022851 150 TPEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYG-VTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~~~~~~~h~ 226 (291)
-...+.-++|.|+ |.+.+.+||+-+|+=+..... .+.-+.... ... +..++|.-..- ....+......-+
T Consensus 125 ~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k--~~FC~F~ly---s~~--~~~iQlsLK~lp~~~~p~p~esavL 197 (236)
T PF15067_consen 125 YGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQK--EDFCFFTLY---SQP--GLDIQLSLKQLPPGMSPEPTESAVL 197 (236)
T ss_pred ccccEEEEEEEecCCCHHHHHHHHHHHhccCcceee--CCcEEEEEe---cCC--CeEEEEEeccCCCCCCcccccceEE
Confidence 4556778899998 999999999999997654322 222222221 122 34444433221 1111222344678
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
.|.|.||-+.+.-+ -+.. .+.. ....-..|+|||.|-|
T Consensus 198 qF~V~~igqLvpLL-----Pnpc---~PIS------~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 198 QFRVEDIGQLVPLL-----PNPC---SPIS------ETRWQTEDYDGNKILL 235 (236)
T ss_pred EEEecchhhhcccC-----CCCc---cccc------CCcceeeCCCCCEecc
Confidence 99999988777766 2222 1111 1235579999999854
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=90.63 E-value=1.2 Score=30.93 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=39.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC--
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE-- 101 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~-- 101 (291)
+..+.|+|+| +++..||.++||-.. + ..+.+.. +.+. .+. .+....-++..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~------~---~~l~f~e-a~G~-DL~---------~~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQL------P---FFLTFQE-AQGP-DLT---------IENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHH------T---TTEEEEE----C-CGS---------S-TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCC------C---ceEEEee-ccCC-ccc---------cCCCcEEeeEEEEEEecCc
Confidence 5678999999 889999999886211 0 0011111 0000 000 01112225666778887
Q ss_pred -CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEE
Q 022851 102 -DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 102 -d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
|+.++.+++.+.++ - .+ ....++.+.||.|.-+-+
T Consensus 65 ~Dl~~L~~~le~~~~--f-----id-Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--F-----ID-KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-E--E--------TT-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccce--E-----ec-CCceEEEEECCcceEEEe
Confidence 68888888888432 1 11 122357789999866543
No 191
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.29 E-value=12 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEee
Q 022851 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+-+.++| .+..++++.+|...|.+ .....+++|-.|..|.|+-
T Consensus 81 ~~v~~~~-q~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 81 FQVACDD-QEEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIVP 123 (151)
T ss_pred EEEEcCC-HHHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEcH
Confidence 4555667 77788888887888862 1367889999999999973
No 192
>PRK11700 hypothetical protein; Provisional
Probab=75.25 E-value=38 Score=26.57 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=44.1
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeec------CCCCceeEEEeeccCCCCcccCCCCeeE
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------GPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
..++||.+.|++.+.|.+|-+..+.+-..-....-.| ..++.+.+ ++... -.++++.+.. ....-.|+-|
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~ING-RPI~l~~L~qPl~~~~w~I-~cvELP~P~~--k~Yp~eGWEH 113 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIING-RPICLFELDQPLQVGHWSI-DCVELPYPGE--KRYPHEGWEH 113 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCC-eeEEEEEcCCCceeCCcEE-EEEEeCCCCC--CCCCCCCceE
Confidence 4579999999999999999988774432222111111 12333333 22111 1245554432 2234458999
Q ss_pred EEEEeCC
Q 022851 96 FAIATED 102 (291)
Q Consensus 96 i~~~v~d 102 (291)
|-+-++.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9988863
No 193
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=75.03 E-value=38 Score=26.55 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=42.5
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEee------cCCCCceeEEEeeccCCCCcccCCCCeeE
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLG------FGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
-.++||+++|++.+.+.++-+..+..-..-....-.|+ .++.+. +++... -.++++.+.. ....-.|+-|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGR-PI~l~~L~qPL~~~~~~I-~~vELP~P~~--K~Yp~eGWEH 108 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGR-PICLFKLNQPLQFGGWSI-DCVELPYPKD--KRYPQEGWEH 108 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTE-EEEEEEEEEEEEETTEEE-EEEEEE---S--S--SS-EEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCe-eEEEEEcCCchhcCCeeE-EEEEeCCCCC--CCCCCCCceE
Confidence 46799999999999999999998866433332211221 222222 222221 1255554433 2224459999
Q ss_pred EEEEeCC-HHHHHHHH
Q 022851 96 FAIATED-VYKLVENI 110 (291)
Q Consensus 96 i~~~v~d-~~~~~~~l 110 (291)
|-|-++. .....+++
T Consensus 109 IE~Vip~~~~~~~~~~ 124 (185)
T PF06185_consen 109 IEFVIPSDAQTLLEQA 124 (185)
T ss_dssp EEEE--S-GGGHHHHH
T ss_pred EEEEecCCHHHHHHHH
Confidence 9998863 33344443
No 194
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=69.77 E-value=19 Score=23.91 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHcCCeeecCCeec-CCCceEEEEEECCCCCEEEEEeCCC
Q 022851 102 DVYKLVENIRAKGGNVTREPGPL-KGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
..+++.+++.+.|+.+..- +. .++.+. +...|.+|..+++.-...
T Consensus 30 ~~~~~~~~l~~~G~~v~~v--e~~~~g~ye-v~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV--EFDDDGCYE-VEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEE--EEcCCCEEE-EEEEECCCCEEEEEEcCC
Confidence 6888999999999965543 33 444444 668999999999988764
No 195
>PHA02754 hypothetical protein; Provisional
Probab=66.05 E-value=13 Score=22.80 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=33.3
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
.|+.++++.++++|.++|+-+.....-.-. +.-..+.-.||..+|+.+.+
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~~S--GdkIVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAITTS--GDKIVVITADAIKIELSETE 63 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEEec--CCEEEEEEcceEEEEEEeee
Confidence 467888999999999999865433222111 23344555788999988754
No 196
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=61.90 E-value=66 Score=24.21 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=42.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeec------CCCCceeEEEeeccCCCCcccCCCCeeEEE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------GPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 97 (291)
++||.+.|++.+.+.++-+.++.+--.-....-.| ..++.+.+ ++... -.++++.+.. ....-.|+-||-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~ING-RPI~l~~L~qPl~~~~~~I-~cvELP~P~~--k~Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEING-RPIALIKLEKPLQFAGWSI-SIVELPFPKD--KKYPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCC-eeEEEEEcCCCceeCCcEE-EEEEeCCCCC--CCCCCCCceEEE
Confidence 58999999999999999988775533222111111 12333333 22111 1245554322 222445899999
Q ss_pred EEeCC
Q 022851 98 IATED 102 (291)
Q Consensus 98 ~~v~d 102 (291)
+-++.
T Consensus 78 ~Vlp~ 82 (149)
T cd07268 78 IVIPS 82 (149)
T ss_pred EEecC
Confidence 88863
No 197
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=60.32 E-value=21 Score=23.78 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=31.6
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeech
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++.++.+.+ ++.|+++...-... . +.+.+...|.+|..+|+.-..
T Consensus 30 ~~~~~~~~l----~~~G~~v~~ve~~~-~-g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREVEFDD-D-GCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHH----HhcCCceEEEEEcC-C-CEEEEEEEECCCCEEEEEEcC
Confidence 567777777 99999654332212 2 347788999999999997543
No 198
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.94 E-value=24 Score=21.63 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCHHHHHHHHHHcCCee
Q 022851 92 GFGHFAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 92 g~~~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45677899999999999999999875
No 199
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=56.96 E-value=25 Score=24.71 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=36.9
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
-+|....+|+..+.+.+..+..|+.+ .+|...|..-.++..++.|+|+
T Consensus 11 ~s~d~~~LD~~~~~Ive~akrtg~~v-~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 11 KSFDHRLLDQVCREIVETAKRTGADV-KGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhCCee-eCCccCCCceEEEEEEeCCCCC
Confidence 34556678888888888878889986 6677777655577888999986
No 200
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=54.35 E-value=23 Score=30.26 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=32.2
Q ss_pred eEEEEE--e---CCHHHHHHHHHHhcCCEEEeeeecCCCceeEEEeecC
Q 022851 25 LHAVYR--V---GDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG 68 (291)
Q Consensus 25 ~hv~l~--v---~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~g 68 (291)
+|+.|. . ..++...+++.. ||+++....+.+..+....++...
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p~ 83 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRPP 83 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEET
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecCC
Confidence 799998 2 367888888976 999999887776666666666543
No 201
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.62 E-value=38 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=26.8
Q ss_pred CCchhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCce
Q 022851 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQT 203 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (291)
.|+.++..||.+.||+..... .+....++|..+.+.+..
T Consensus 145 a~~~e~a~wy~dyLGleie~~---hgevikfiFTnIdpkdp~ 183 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG---HGEVIKFIFTNIDPKDPT 183 (246)
T ss_pred hccHHHHHHHHHhcCceeeec---cCceEEEEEeccCCCCCc
Confidence 577888999999999996643 233356677666555443
No 202
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.75 E-value=40 Score=21.20 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=20.0
Q ss_pred ceeEEEEEec--chhhhHHHHHHHHHHhCCeeecC
Q 022851 222 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 254 (291)
Q Consensus 222 ~~~h~~~~v~--di~~~~~~l~~~~~~~G~~~~~~ 254 (291)
+...+.|.++ |.+++.+.| +++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 3444555554 666777777 9999998765
No 203
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.36 E-value=77 Score=20.57 Aligned_cols=51 Identities=20% Similarity=-0.009 Sum_probs=31.8
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCC-CceEEEEECCCCCeE
Q 022851 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL-NTKITSFVDPDGWKT 276 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~-~~~~~~~~Dp~G~~i 276 (291)
+-+...|--..+.++...|.+.|+.+...--...+. -...||++|.+|..+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 334445544455555555589999876554333221 126699999999987
No 204
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=44.10 E-value=49 Score=23.03 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=33.6
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
|....++.+++.+.+.+++.|+.+ .+|-..|..-.++...+.|.|+
T Consensus 10 ~d~~~Ld~~~~~I~~~ak~~g~~~-~GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 10 TNVRSLEKVCAQIKRIAEKTGVRM-SGPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEE-ECCccCCcceEEEEeeeCCCCC
Confidence 344557888888877778889886 5667777654567788999864
No 205
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=42.52 E-value=1.3e+02 Score=21.76 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=51.0
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEeeee------cCCCceeEEEeecCCCC--ceeEEEeeccCCCCcccCCCCe
Q 022851 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRD------VPEEKYSNAFLGFGPEQ--SHFVVELTYNYGVTSYDIGTGF 93 (291)
Q Consensus 22 ~~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g~ 93 (291)
..|.-+.+.|++++.+..-..+ -||.+..... ...++...+.--+++.+ ......+.... .-
T Consensus 40 ~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek---------~K 109 (142)
T COG4747 40 GDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK---------QK 109 (142)
T ss_pred cCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC---------ce
Confidence 3466788999999999999988 8998754321 11111111000011111 11111111111 11
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeec
Q 022851 94 GHFAIATEDVYKLVENIRAKGGNVTR 119 (291)
Q Consensus 94 ~~i~~~v~d~~~~~~~l~~~G~~~~~ 119 (291)
.-+.++|+|++++...|+.+|++...
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 34568899999999999999998654
No 206
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=40.67 E-value=58 Score=27.88 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=22.7
Q ss_pred cCcceeEEEEEe------cchhhhHHHHHHHHHHhCCeee
Q 022851 219 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 219 ~~~~~~h~~~~v------~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.|..++|+...| .||+++.+.+ +++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 678899999999 9999999999 99999876
No 207
>PRK11700 hypothetical protein; Provisional
Probab=37.65 E-value=2e+02 Score=22.63 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=46.3
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcce-eEEEecccCCC---ceeEEEEeeecCcceeecCcceeEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEED---QTTVLELTYNYGVTEYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~~~h~~ 227 (291)
..++|+.++|++.+.+.+|....+-.-..-....-+|+. .++-+..+-.- .-..+||.++.+ +.|+. .|+-|+-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp~-eGWEHIE 115 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRYPH-EGWEHIE 115 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCCC-CCceEEE
Confidence 358899999999999999888766432211111112222 22222211110 124667755433 23332 4889999
Q ss_pred EEecchhhhHH
Q 022851 228 ISTDDVYKSAE 238 (291)
Q Consensus 228 ~~v~di~~~~~ 238 (291)
+.++.-.+.+.
T Consensus 116 lVlp~~~~t~~ 126 (187)
T PRK11700 116 LVLPGDPETLD 126 (187)
T ss_pred EEecCCcchHH
Confidence 99875344433
No 208
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.38 E-value=1.8e+02 Score=21.96 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=44.0
Q ss_pred ceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcce-eEEEecccCCC---ceeEEEEeeecCcceeecCcceeEEEEE
Q 022851 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEED---QTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
++|+.++|++.+.+.+|....+..-..-....-+++. .++.+..+-.- .-..+||.++.+ +.|+ -.|+-|+-+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Yp-~eGWEHIE~V 79 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD-KKYP-QEGWEHIEIV 79 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceEEEEE
Confidence 6899999999999999988766443221111112222 22222211110 124567755433 2232 2488999999
Q ss_pred ecchhh
Q 022851 230 TDDVYK 235 (291)
Q Consensus 230 v~di~~ 235 (291)
++.-.+
T Consensus 80 lp~~~~ 85 (149)
T cd07268 80 IPSPPQ 85 (149)
T ss_pred ecCCcc
Confidence 875333
No 209
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=37.30 E-value=21 Score=20.69 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=18.6
Q ss_pred CCceeEEeeeCCchhhHHHHHHhh
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
++++..++-+.+.++..+||+..|
T Consensus 10 gp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CccccCCCccccccchhHHHHHHH
Confidence 455566667788899999999866
No 210
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=37.06 E-value=70 Score=23.01 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=34.0
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
|....++++++.+.+.+++.|+.+ .+|-..|..-.++...+.|.|+
T Consensus 26 ~d~~~Ld~~~~~Ii~~ak~~g~~v-~GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 26 KNLKSIEKVCADIITGAKEKNLKV-TGPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEe-ECCccCCceeEEEEeeeCCCCC
Confidence 444568888888888878888886 5666777644566778999975
No 211
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=36.85 E-value=76 Score=22.26 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=33.3
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
|....++.+++.+.+.+++.|+.+ .+|-..|..-.++...+.|.|+
T Consensus 11 ~d~~~Ld~~~~~I~~~~k~~g~~~-~GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 11 TNPEDLDEVCDQIKEIAEKTGVDM-SGPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeE-ECCCcCCceeEEEEeeeCCCCC
Confidence 334457888888877778889876 5666666644567788999865
No 212
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=35.15 E-value=2.2e+02 Score=22.39 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCceeEEeeeCCchhhHHHHHHhhCCeeeeecccCCcce-eEEEecccC---CCceeEEEEeeecCcceeecCcceeEEE
Q 022851 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAE---EDQTTVLELTYNYGVTEYTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~l~l~~~~~~~~~~~~~~~~h~~ 227 (291)
..++|+.++|++.+.+.+|-...+..-..-....-+|+. .++-+..+- +-.-..+||.++.+. .|+ -.|+-|+-
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~K-~Yp-~eGWEHIE 110 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKDK-RYP-QEGWEHIE 110 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS---S-S-EEEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCCC-CCC-CCCceEEE
Confidence 357999999999999999998877654332221222222 222222111 111346677654442 222 24899999
Q ss_pred EEecc
Q 022851 228 ISTDD 232 (291)
Q Consensus 228 ~~v~d 232 (291)
|.++.
T Consensus 111 ~Vip~ 115 (185)
T PF06185_consen 111 FVIPS 115 (185)
T ss_dssp EE--S
T ss_pred EEecC
Confidence 99875
No 213
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=33.91 E-value=1.7e+02 Score=20.60 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=39.8
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCceE-EEEEECCCCCEEEEEeCCCCCCCceeEEeeeCCchhhHHHHH
Q 022851 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTH-IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v~D~~~~~~Fy~ 172 (291)
..+.+++.++|.++++-.... +..+++... |++.++..|..+-+--.-.....-..+.+-+.+.+.+..|+.
T Consensus 35 ~~~~~~i~~~L~~~nI~~iA~-~~~~~~~~~~y~s~~~~~~~~fL~El~~~~~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 35 VPSPDAIEEKLQANNIFTIAS-GKVDNGQKFFYFSAKTTNGIWFLVELTIDPGSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp ---HHHHHHHHHCTT-EEEEE-EECTT-EEEEEEEEEBTTS-EEEEEEEE-TT-SSEEEEEEESSCCCHHHHHH
T ss_pred CCcHHHHHHHHHHCCEEEEec-CCCCccccEEEEEEEcCCCcEEEEEEEEcCCCccEEEEEecCCHHHHHHHHH
Confidence 357899999999999986653 233332332 233466766554222222233446688899998877666654
No 214
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=33.44 E-value=81 Score=22.06 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=33.9
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
+|....++.+.+.+...+...|+.+ .+|-..|....++.+++.|.++
T Consensus 15 S~d~~~L~~~~~~I~~~~k~~~~~~-~GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 15 SFNHELLNSSCKKIIDTASRTNATA-VGPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCeE-eCCcCCCcEEEEEEEecCCCCC
Confidence 3455668888888877778888876 4666666644577888999874
No 215
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=33.00 E-value=43 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=21.9
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeee
Q 022851 224 AQVAISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.-+-+.|+|++++.+.| +++|+.++
T Consensus 110 Alli~r~ed~d~~~~aL----ed~gi~~~ 134 (142)
T COG4747 110 ALLIVRVEDIDRAIKAL----EDAGIKLI 134 (142)
T ss_pred EEEEEEhhHHHHHHHHH----HHcCCeec
Confidence 45778999999999999 99999875
No 216
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=32.57 E-value=80 Score=19.28 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=19.7
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEeechh
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
++++...+- ..+|-.+.... . ....-..+|||.++.|++...
T Consensus 5 ~ls~~ea~~----l~~Gr~l~~~~----~--~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 5 ELSAEEARD----LRHGRRLPAAG----P--PGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp E--HHHHHH----HHTT---B-----------S-EEEE-TTS-EEEEEEEET
T ss_pred ECCHHHHHH----HhCCCccCCCC----C--CceEEEECCCCcEEEEEEccC
Confidence 344444444 67887654331 1 124557899999999997543
No 217
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.52 E-value=97 Score=20.57 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=22.1
Q ss_pred CeeEEEEEeCC----HHHHHHHHHHcCCeeec
Q 022851 92 GFGHFAIATED----VYKLVENIRAKGGNVTR 119 (291)
Q Consensus 92 g~~~i~~~v~d----~~~~~~~l~~~G~~~~~ 119 (291)
+-..+.++++| ++.+.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 33456788888 88999999999998653
No 218
>PRK00969 hypothetical protein; Provisional
Probab=30.95 E-value=1.1e+02 Score=28.13 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC------CCCCceeEEeeeCCchhhHHHHHHhh
Q 022851 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~------~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
.+.++...|.+.|+....+....++ ..+.-++|.- -++++.... +...+..|.|.-.++.++..||+.+.
T Consensus 325 t~~eA~~~~~~~gIel~~eg~~~dd---aVVV~Q~P~~-TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t 400 (508)
T PRK00969 325 TLKEAEELLEKLGIELEKEGYDGDD---AVVVEQTPET-TLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT 400 (508)
T ss_pred CHHHHHHHHHhCCcEEEecCCCCCC---cEEEecCCch-HHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc
Confidence 5788999999999998764322222 1122355532 223332221 34578899999999999999999999
Q ss_pred CCeeee
Q 022851 176 GMKLLR 181 (291)
Q Consensus 176 G~~~~~ 181 (291)
|+....
T Consensus 401 GL~~~~ 406 (508)
T PRK00969 401 GLKTKP 406 (508)
T ss_pred CCcccc
Confidence 997443
No 219
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=42 Score=27.05 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHhcCCEEEee
Q 022851 32 GDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 32 ~d~~~~~~fy~~~lG~~~~~~ 52 (291)
.|..+++.||.+.||+++..-
T Consensus 145 a~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred hccHHHHHHHHHhcCceeeec
Confidence 367788999999999998643
No 220
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=29.70 E-value=99 Score=21.40 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCC
Q 022851 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+.++..+|...|+. ..+.|++|++.+|-...
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgtnt 53 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELGTNT 53 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecCCCe
Confidence 4678888999998854 45799999999876654
No 221
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=28.89 E-value=1.4e+02 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=16.3
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEee
Q 022851 29 YRVGDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 29 l~v~d~~~~~~fy~~~lG~~~~~~ 52 (291)
....+=..+.++|++ |||+....
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344577789999988 99998754
No 222
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=26.43 E-value=1.2e+02 Score=21.12 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=32.4
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
+....++.....+...+...|+.+ .+|...|....++..++.|.++
T Consensus 13 ~d~~~L~~~~~~i~~~a~~~~i~v-~GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 13 FDHRLLDQSAKKIVETAKRTGAQV-RGPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeE-ECCcCCCcEEEEEEEeeCCCCC
Confidence 334457777777777767788886 5666666644577788999886
No 223
>PTZ00330 acetyltransferase; Provisional
Probab=25.76 E-value=1e+02 Score=22.39 Aligned_cols=27 Identities=11% Similarity=0.427 Sum_probs=19.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEee
Q 022851 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 23 ~l~hv~l~v~d~~~~~~fy~~~lG~~~~~~ 52 (291)
++..+.+.++ +.+.+||++ +||+....
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 3445566654 579999987 99997654
No 224
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=24.96 E-value=1.2e+02 Score=21.01 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=32.6
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022851 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
+....++...+.+...+...|+.+ .+|...|....++..++.|.++
T Consensus 10 ~d~~~L~~~~~~i~~~a~~~gi~~-~gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 10 YDHRLLDQSTKKIVETAKRTGAQV-KGPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCce-ecccCCCCEEEEEEEeeCCCCC
Confidence 344557777777777778888887 4666666644567788999886
No 225
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.88 E-value=2.1e+02 Score=18.75 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=31.6
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCC-CceEEEEECCCCCeEE
Q 022851 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL-NTKITSFVDPDGWKTV 277 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~-~~~~~~~~Dp~G~~ie 277 (291)
+.+.+.|--..+-.+-..|.+.|+.+...--...+. ....||++|.+|..+.
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 344555644444444444488899876554333221 1266999999999873
No 226
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=24.85 E-value=1.9e+02 Score=26.63 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC------CCCCceeEEeeeCCchhhHHHHHHhh
Q 022851 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~------~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
++.++...+.+.|+.........++ ....-++|.- -++++.... +...+..|.|.-.++.++..||+++.
T Consensus 322 t~~eA~~~~~~~gIe~~~dG~~~dD---aVVV~Q~P~~-TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t 397 (503)
T TIGR03268 322 TQEEAEELLEELGIELEKEGVDGDD---AVVVKQEPPY-TLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT 397 (503)
T ss_pred CHHHHHHHHHhcCcEEeecCCCCCC---eEEEecCCch-HHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc
Confidence 5788899999999887643211121 2122355532 233333221 34678899999999999999999999
Q ss_pred CCeeee
Q 022851 176 GMKLLR 181 (291)
Q Consensus 176 G~~~~~ 181 (291)
|+....
T Consensus 398 GL~~~~ 403 (503)
T TIGR03268 398 GLKTKP 403 (503)
T ss_pred CCcccc
Confidence 997443
No 227
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.54 E-value=1.7e+02 Score=18.00 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.2
Q ss_pred EEEEEeCCHHHHHHHHHHcCCee
Q 022851 95 HFAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
.+-+.++|.+.+.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 34456688889999999999875
No 228
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.25 E-value=1.8e+02 Score=22.56 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCceEEEEEECCCCCEEEEEeCCC-----CCCCceeEEeeeCCchhhHHHHHHhh
Q 022851 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP-----TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~-----~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
+..+++.+.+.+.-..-..+.+-.-.|.. ++.++++||..+.+.-.+. +++--++..+..++-=++.++|++-=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~G-iF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEG-IFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecce-EEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 44677766655543332222111223444 4789999999988877764 24555677777777777788887777
Q ss_pred CCeeee
Q 022851 176 GMKLLR 181 (291)
Q Consensus 176 G~~~~~ 181 (291)
||....
T Consensus 157 gWVa~y 162 (181)
T COG1791 157 GWVAIY 162 (181)
T ss_pred Cceeee
Confidence 776443
No 229
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=22.93 E-value=1.1e+02 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=21.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEE
Q 022851 24 FLHAVYRVGDLDRTIKFYTECFGMKLL 50 (291)
Q Consensus 24 l~hv~l~v~d~~~~~~fy~~~lG~~~~ 50 (291)
-+|+.+...|..+..+...++||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 589999999999999999999999874
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=22.07 E-value=74 Score=16.95 Aligned_cols=18 Identities=22% Similarity=0.792 Sum_probs=13.5
Q ss_pred EeCCHHHHHHHHHHhcCC
Q 022851 30 RVGDLDRTIKFYTECFGM 47 (291)
Q Consensus 30 ~v~d~~~~~~fy~~~lG~ 47 (291)
...|.++++++|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 356899999999997744
No 231
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=22.04 E-value=1.5e+02 Score=19.35 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.0
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeee
Q 022851 227 AISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~ 252 (291)
+-..+|++++++++.++.++.|..-+
T Consensus 21 ~~~~~d~d~Al~eM~e~A~~lGAnAV 46 (74)
T TIGR03884 21 STESDNVDEIVENLREKVKAKGGMGL 46 (74)
T ss_pred EEecCCHHHHHHHHHHHHHHcCCCEE
Confidence 34457999999999999999998644
No 232
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=21.59 E-value=3.8e+02 Score=20.61 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=70.0
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCe------ecCCC----ceEEEEEECCCCCEEEEEeCCCCCC---CceeEEeeeCCc
Q 022851 98 IATEDVYKLVENIRAKGGNVTREPG------PLKGG----TTHIAFVKDPDGYIFELIQRGPTPE---PLCQVMLRVGDL 164 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~------~~~~g----~~~~~~~~dp~G~~iel~~~~~~~~---~~~hv~l~v~D~ 164 (291)
+.+.|.+.+.++|.+.|+....... +.+++ ....+.++.-+|...-.+..+.... .-.-+.+.|.|.
T Consensus 8 ~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~ 87 (174)
T TIGR00318 8 AKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDI 87 (174)
T ss_pred EEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCH
Confidence 5678999999999999976443211 11110 0012334433332211111111111 122366788999
Q ss_pred hhhHHHHHHhhCCeeeeecccCCcceeEEEecccCCCceeEEEEeeecCcceeecCcceeEEEEEec---chhhhHHHHH
Q 022851 165 GRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEVVN 241 (291)
Q Consensus 165 ~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~---di~~~~~~l~ 241 (291)
++....+. .||+++....... -..+.++ +..+.+.. .+ .-| .+.-+-.-++ ++.++.+.+.
T Consensus 88 ~~~~~iL~-~LG~~~~~~v~K~---R~~~~l~------~~~i~lD~-v~----~lG-~FvEIE~~~~~~~~~~~~~~~i~ 151 (174)
T TIGR00318 88 ENALQILK-KLGFKKVYEVIKK---RRIYQTN------ELNVSIDD-VE----GLG-FFLEIEKIINNINDKDLALEEIF 151 (174)
T ss_pred HHHHHHHH-HCCCeEEEEEEEE---EEEEEEC------CEEEEEEc-cC----CCc-cEEEEEEecCCccchHHHHHHHH
Confidence 99999997 5999975433211 1122222 33444432 11 012 3334444444 3567777777
Q ss_pred HHHHHhCC
Q 022851 242 LVTQELGG 249 (291)
Q Consensus 242 ~~~~~~G~ 249 (291)
..+...|+
T Consensus 152 ~~~~~LGl 159 (174)
T TIGR00318 152 EIINQLGI 159 (174)
T ss_pred HHHHHcCC
Confidence 77788887
No 233
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=1.1e+02 Score=22.06 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeee
Q 022851 95 HFAIATEDVYKLVENIRAKGGNVT 118 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~ 118 (291)
|+-++-+|++.+.+.|+++|..+.
T Consensus 104 hiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 104 HILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred eEEEehhhHHHHHHHHHHcCCccc
Confidence 444555789999999999997653
No 234
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=21.05 E-value=1.3e+02 Score=20.00 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=23.6
Q ss_pred eEEEEECCCCCeEEEeechhhhhhhhc
Q 022851 264 KITSFVDPDGWKTVLVDNEDFLKEIQS 290 (291)
Q Consensus 264 ~~~~~~Dp~G~~iel~~~~~~~~~~~~ 290 (291)
..+-..||+|-++-|...+.+.+.++|
T Consensus 42 f~i~Y~D~~gDLLPInNDdNf~kAlss 68 (80)
T cd06403 42 FLIGYTDPHGDLLPINNDDNFLKALSS 68 (80)
T ss_pred EEEEEeCCCCCEecccCcHHHHHHHHc
Confidence 456678999999999999999999886
No 235
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.68 E-value=1.5e+02 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=24.3
Q ss_pred eEEEEECCCCCeEEEeechhhhhhhhc
Q 022851 264 KITSFVDPDGWKTVLVDNEDFLKEIQS 290 (291)
Q Consensus 264 ~~~~~~Dp~G~~iel~~~~~~~~~~~~ 290 (291)
....++|.+|-.+-|....++.+.+++
T Consensus 48 ftlky~DeeGDlvtIssdeEL~~A~~~ 74 (87)
T cd06402 48 FQLFWKDEEGDLVAFSSDEELVMALGS 74 (87)
T ss_pred EEEEEECCCCCEEeecCHHHHHHHHHc
Confidence 568889999999999999999988876
No 236
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.67 E-value=1.2e+02 Score=14.58 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=9.7
Q ss_pred EEEEEECCCCCEEE
Q 022851 130 HIAFVKDPDGYIFE 143 (291)
Q Consensus 130 ~~~~~~dp~G~~ie 143 (291)
.+..+.|.+|+++-
T Consensus 7 I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 7 IYSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEEE-TTSCEEE
T ss_pred EEEEEEcCCcCEEE
Confidence 34778999998873
No 237
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=20.62 E-value=3.2e+02 Score=20.96 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=36.0
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCccc--CC-CCceEEEEEC-CCCCeEEEeechh
Q 022851 232 DVYKSAEVVNLVTQELGGKITRQPGSI--PG-LNTKITSFVD-PDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~--~~-~~~~~~~~~D-p~G~~iel~~~~~ 283 (291)
++++.+..+..+|.+.|+.+..-.... .. ....-..++| ++|..|.|.|.-.
T Consensus 11 ~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG 66 (159)
T PF10649_consen 11 DIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLG 66 (159)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccC
Confidence 578888888888899999875544332 11 1123456777 7899999999643
No 238
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=1.1e+02 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.427 Sum_probs=21.9
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeee
Q 022851 224 AQVAISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.|+-..-+|+++++++| +++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L----~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKAL----EEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHH----HHcCCccc
Confidence 68888889999999999 99998763
No 239
>PRK10562 putative acetyltransferase; Provisional
Probab=20.24 E-value=3.1e+02 Score=19.88 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHhcCCEEEeeee
Q 022851 32 GDLDRTIKFYTECFGMKLLRKRD 54 (291)
Q Consensus 32 ~d~~~~~~fy~~~lG~~~~~~~~ 54 (291)
.+=..+.+||++ +||+.....-
T Consensus 106 ~~N~~s~~~y~k-~Gf~~~~~~~ 127 (145)
T PRK10562 106 QKNQRAVNFYHA-QGFRIVDSAW 127 (145)
T ss_pred cCChHHHHHHHH-CCCEEccccc
Confidence 344679999988 9999876543
No 240
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=20.22 E-value=91 Score=19.83 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=15.6
Q ss_pred eeeEEEEEeC-CHHHHHHHHHHhcCCE
Q 022851 23 RFLHAVYRVG-DLDRTIKFYTECFGMK 48 (291)
Q Consensus 23 ~l~hv~l~v~-d~~~~~~fy~~~lG~~ 48 (291)
++.++.+.+. +-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 3455555554 33448889986 8875
No 241
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=20.18 E-value=2.5e+02 Score=19.16 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=24.9
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCC
Q 022851 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD 272 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~ 272 (291)
.|+-|.+++ ++..+.+.+.|.+.|++.-..-. .+...+|++|.+
T Consensus 22 YhLEi~~~~-~e~a~~l~~lL~~~~i~~k~~~r----~~~~~vYlK~~e 65 (93)
T PF14527_consen 22 YHLEIRFND-EEFAEQLKELLNKFGINAKIIKR----KNKYVVYLKDSE 65 (93)
T ss_dssp --EEEEES--HHHHHHHHHHHHHH----EEEEE----SSEEEEEE--HH
T ss_pred eEEEEecCC-HHHHHHHHHHHHHcCCCceeeee----cCceEEEEcCHH
Confidence 899999998 77888888888888886532211 234788988754
Done!