Query 022852
Match_columns 291
No_of_seqs 224 out of 1685
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03176 AllC allantoate amid 100.0 1.4E-51 3.1E-56 390.2 28.9 260 1-286 28-288 (406)
2 PRK13799 unknown domain/N-carb 100.0 7.2E-50 1.6E-54 393.7 28.2 264 1-286 209-473 (591)
3 PRK13590 putative bifunctional 100.0 3.5E-49 7.6E-54 389.0 28.9 262 1-286 209-471 (591)
4 PRK12891 allantoate amidohydro 100.0 7.4E-48 1.6E-52 365.9 27.8 260 1-287 35-295 (414)
5 TIGR01879 hydantase amidase, h 100.0 2.5E-46 5.5E-51 354.0 28.7 261 1-286 26-287 (401)
6 PRK12892 allantoate amidohydro 100.0 1.9E-43 4.1E-48 335.2 28.6 260 1-286 34-295 (412)
7 PRK12890 allantoate amidohydro 100.0 3.7E-42 8E-47 326.8 28.7 261 1-286 33-296 (414)
8 PRK12893 allantoate amidohydro 100.0 3.8E-41 8.2E-46 319.6 27.5 258 2-287 36-295 (412)
9 PRK09290 allantoate amidohydro 100.0 3.4E-40 7.5E-45 313.2 28.5 263 1-286 32-295 (413)
10 PLN02693 IAA-amino acid hydrol 100.0 2.7E-33 5.8E-38 267.5 24.0 218 1-285 62-295 (437)
11 PLN02280 IAA-amino acid hydrol 100.0 2.3E-32 4.9E-37 263.2 23.2 217 1-286 112-346 (478)
12 PRK06915 acetylornithine deace 100.0 7.3E-32 1.6E-36 256.7 21.9 221 1-287 32-295 (422)
13 PRK08588 succinyl-diaminopimel 100.0 6.8E-32 1.5E-36 253.2 21.0 215 1-287 17-257 (377)
14 PRK13009 succinyl-diaminopimel 100.0 1.2E-31 2.6E-36 251.2 22.4 222 1-287 17-263 (375)
15 COG1473 AbgB Metal-dependent a 100.0 2E-31 4.4E-36 248.9 22.4 217 1-284 27-262 (392)
16 PRK07473 carboxypeptidase; Pro 100.0 2.2E-31 4.7E-36 250.1 22.5 203 6-284 34-259 (376)
17 TIGR01246 dapE_proteo succinyl 100.0 5.3E-31 1.1E-35 246.6 23.5 222 1-287 14-260 (370)
18 PRK07338 hypothetical protein; 100.0 3.2E-31 6.9E-36 250.8 22.2 206 5-286 39-280 (402)
19 PRK06837 acetylornithine deace 100.0 3.2E-31 7E-36 252.8 21.2 223 1-287 35-300 (427)
20 TIGR01883 PepT-like peptidase 100.0 2.7E-31 5.7E-36 247.8 19.7 208 1-286 15-248 (361)
21 PRK06133 glutamate carboxypept 100.0 9.2E-31 2E-35 248.5 22.2 207 5-287 59-288 (410)
22 PRK13004 peptidase; Reviewed 100.0 1.2E-30 2.5E-35 246.9 21.8 215 1-287 30-267 (399)
23 TIGR03320 ygeY M20/DapE family 100.0 1.5E-30 3.3E-35 245.8 21.8 213 2-286 29-264 (395)
24 PRK07906 hypothetical protein; 100.0 1.1E-30 2.4E-35 249.0 21.0 236 3-286 22-309 (426)
25 TIGR01900 dapE-gram_pos succin 100.0 2.7E-30 5.8E-35 242.5 21.6 218 2-287 12-265 (373)
26 PRK13013 succinyl-diaminopimel 100.0 2.3E-30 5E-35 246.6 21.3 226 4-287 35-302 (427)
27 TIGR01891 amidohydrolases amid 100.0 4.4E-30 9.6E-35 240.0 22.5 220 1-286 14-250 (363)
28 TIGR01910 DapE-ArgE acetylorni 100.0 2.7E-30 5.9E-35 242.3 19.8 220 2-287 17-266 (375)
29 TIGR03526 selenium_YgeY putati 100.0 8.2E-30 1.8E-34 240.8 22.1 214 1-286 28-264 (395)
30 PRK07522 acetylornithine deace 100.0 4.3E-30 9.3E-35 241.5 19.2 220 2-287 20-266 (385)
31 PRK08652 acetylornithine deace 100.0 9.8E-30 2.1E-34 235.7 20.3 203 1-287 17-235 (347)
32 PRK00466 acetyl-lysine deacety 100.0 1.1E-29 2.3E-34 236.0 19.5 197 2-287 26-235 (346)
33 TIGR01892 AcOrn-deacetyl acety 100.0 1.8E-29 3.9E-34 235.3 20.1 214 4-287 16-256 (364)
34 PRK09133 hypothetical protein; 100.0 2.3E-29 5.1E-34 242.9 21.3 234 3-287 56-352 (472)
35 PRK05111 acetylornithine deace 100.0 1.7E-29 3.8E-34 237.3 19.8 212 5-287 31-269 (383)
36 PRK13007 succinyl-diaminopimel 100.0 8.1E-29 1.8E-33 230.2 22.6 214 1-287 22-251 (352)
37 PRK13381 peptidase T; Provisio 100.0 7.4E-29 1.6E-33 234.9 21.9 205 3-286 28-284 (404)
38 PRK08596 acetylornithine deace 100.0 1.1E-28 2.3E-33 235.1 22.3 217 3-287 33-286 (421)
39 PRK13983 diaminopimelate amino 100.0 1.2E-28 2.5E-33 232.6 21.4 223 4-287 28-284 (400)
40 TIGR01893 aa-his-dipept aminoa 100.0 1.5E-28 3.2E-33 237.7 20.4 213 2-282 20-264 (477)
41 PRK08737 acetylornithine deace 100.0 1.7E-28 3.6E-33 229.6 19.5 202 4-287 28-253 (364)
42 PRK04443 acetyl-lysine deacety 100.0 2.3E-28 4.9E-33 227.3 20.3 206 2-287 22-240 (348)
43 TIGR01880 Ac-peptdase-euk N-ac 100.0 7.5E-28 1.6E-32 227.7 21.9 227 4-287 29-281 (400)
44 PRK06446 hypothetical protein; 100.0 6.9E-28 1.5E-32 230.5 20.8 229 6-287 25-316 (436)
45 COG0624 ArgE Acetylornithine d 100.0 7.8E-28 1.7E-32 228.2 20.8 224 3-287 31-290 (409)
46 PRK05469 peptidase T; Provisio 100.0 1.7E-27 3.8E-32 225.8 22.0 204 4-286 30-286 (408)
47 PRK08201 hypothetical protein; 100.0 7.1E-28 1.5E-32 231.6 19.4 236 3-288 37-336 (456)
48 TIGR01882 peptidase-T peptidas 100.0 4.7E-28 1E-32 230.0 17.9 205 2-286 30-288 (410)
49 TIGR01902 dapE-lys-deAc N-acet 100.0 2.1E-27 4.6E-32 219.6 21.4 200 2-287 13-226 (336)
50 PRK09104 hypothetical protein; 100.0 2E-27 4.3E-32 229.0 20.0 234 5-288 42-344 (464)
51 PRK08651 succinyl-diaminopimel 100.0 2.6E-27 5.6E-32 223.4 19.6 214 3-287 26-274 (394)
52 PRK07907 hypothetical protein; 100.0 3.6E-27 7.8E-32 226.4 20.2 231 4-287 42-327 (449)
53 PRK08262 hypothetical protein; 100.0 5E-27 1.1E-31 227.5 21.3 237 7-287 74-365 (486)
54 PRK15026 aminoacyl-histidine d 99.9 2.8E-26 6.1E-31 221.4 19.8 203 2-283 26-271 (485)
55 PRK07318 dipeptidase PepV; Rev 99.9 2.2E-25 4.9E-30 214.9 19.4 247 4-287 44-355 (466)
56 KOG2275 Aminoacylase ACY1 and 99.9 3.6E-25 7.8E-30 202.5 18.8 222 7-285 49-296 (420)
57 TIGR01886 dipeptidase dipeptid 99.9 5.6E-25 1.2E-29 212.0 20.3 245 3-287 42-355 (466)
58 PRK07205 hypothetical protein; 99.9 1.1E-24 2.3E-29 208.9 20.3 237 6-287 41-332 (444)
59 PRK07079 hypothetical protein; 99.9 1.1E-24 2.5E-29 210.1 19.8 232 4-287 38-338 (469)
60 TIGR01887 dipeptidaselike dipe 99.9 2.1E-24 4.6E-29 206.9 21.6 242 4-287 32-342 (447)
61 PRK06156 hypothetical protein; 99.9 9.8E-22 2.1E-26 191.9 20.0 245 6-287 75-400 (520)
62 PRK08554 peptidase; Reviewed 99.8 4.7E-19 1E-23 169.6 18.2 89 5-100 26-138 (438)
63 PF07687 M20_dimer: Peptidase 99.6 3.4E-16 7.4E-21 121.5 6.2 92 182-287 1-92 (111)
64 PRK10199 alkaline phosphatase 99.6 2.9E-14 6.4E-19 130.9 11.8 103 2-115 51-188 (346)
65 KOG2276 Metalloexopeptidases [ 99.3 7.2E-11 1.6E-15 108.3 16.6 235 4-287 40-349 (473)
66 COG4187 RocB Arginine degradat 99.3 4.2E-11 9.1E-16 110.9 14.4 181 2-225 26-262 (553)
67 COG2195 PepD Di- and tripeptid 99.2 1.5E-11 3.2E-16 115.8 6.0 205 2-285 21-292 (414)
68 TIGR03106 trio_M42_hydro hydro 99.2 1E-10 2.2E-15 108.5 11.6 98 1-101 18-221 (343)
69 PRK09961 exoaminopeptidase; Pr 99.1 5.2E-10 1.1E-14 104.0 10.1 108 1-119 15-215 (344)
70 TIGR03107 glu_aminopep glutamy 99.1 5.2E-10 1.1E-14 103.9 9.8 110 1-119 13-227 (350)
71 COG1363 FrvX Cellulase M and r 99.1 9.4E-10 2E-14 101.6 10.1 109 1-119 17-229 (355)
72 PRK09864 putative peptidase; P 98.9 5.7E-09 1.2E-13 97.0 9.6 105 1-119 15-222 (356)
73 PF01546 Peptidase_M20: Peptid 98.8 7.4E-09 1.6E-13 87.3 6.6 61 46-112 1-81 (189)
74 PF04389 Peptidase_M28: Peptid 98.6 4.2E-08 9E-13 82.5 5.0 64 44-114 2-72 (179)
75 KOG2194 Aminopeptidases of the 98.4 1.3E-06 2.7E-11 87.8 9.8 107 4-117 79-212 (834)
76 PF05343 Peptidase_M42: M42 gl 97.8 2.3E-05 5E-10 71.3 5.1 47 60-115 133-179 (292)
77 COG2234 Iap Predicted aminopep 97.7 9.8E-05 2.1E-09 70.7 8.1 67 42-117 208-275 (435)
78 KOG2195 Transferrin receptor a 97.6 0.00019 4.1E-09 72.1 8.4 80 26-113 336-418 (702)
79 KOG3946 Glutaminyl cyclase [Po 96.8 0.0057 1.2E-07 54.5 8.0 112 2-115 68-200 (338)
80 PF05450 Nicastrin: Nicastrin; 95.9 0.028 6E-07 49.6 6.9 67 43-114 1-73 (234)
81 COG4882 Predicted aminopeptida 95.2 0.35 7.6E-06 44.9 11.6 79 29-117 179-261 (486)
82 KOG2526 Predicted aminopeptida 88.5 1.7 3.8E-05 41.3 7.2 81 29-114 194-287 (555)
83 cd00433 Peptidase_M17 Cytosol 79.6 19 0.00042 35.1 10.4 87 7-99 175-296 (468)
84 PF00883 Peptidase_M17: Cytoso 74.0 47 0.001 30.6 10.7 88 7-99 19-141 (311)
85 PF04114 Gaa1: Gaa1-like, GPI 70.8 11 0.00024 37.1 6.3 73 29-115 4-77 (504)
86 KOG3566 Glycosylphosphatidylin 68.7 25 0.00055 34.9 8.1 81 10-97 92-183 (617)
87 PTZ00412 leucyl aminopeptidase 66.9 59 0.0013 32.4 10.2 34 61-99 322-355 (569)
88 PF09940 DUF2172: Domain of un 66.1 20 0.00043 33.8 6.6 73 15-95 98-176 (386)
89 PRK00913 multifunctional amino 55.7 94 0.002 30.5 9.5 86 8-99 193-310 (483)
90 PRK02256 putative aminopeptida 52.5 21 0.00046 34.7 4.5 39 56-100 255-293 (462)
91 COG0260 PepB Leucyl aminopepti 42.2 1.4E+02 0.0031 29.3 8.3 35 60-99 275-309 (485)
92 COG1362 LAP4 Aspartyl aminopep 35.5 99 0.0021 29.7 5.9 53 2-54 20-90 (437)
93 PRK02813 putative aminopeptida 35.4 92 0.002 30.0 5.9 53 2-54 18-88 (428)
94 KOG2597 Predicted aminopeptida 33.6 2.6E+02 0.0057 27.6 8.6 88 7-100 210-332 (513)
95 PTZ00371 aspartyl aminopeptida 32.8 1.1E+02 0.0024 29.9 6.0 51 2-53 19-89 (465)
96 COG1360 MotB Flagellar motor p 31.6 1.7E+02 0.0036 25.8 6.6 53 44-98 165-219 (244)
97 PRK02813 putative aminopeptida 31.3 48 0.001 32.0 3.2 38 56-100 229-266 (428)
98 KOG2657 Transmembrane glycopro 30.4 1.4E+02 0.003 29.6 6.1 78 30-112 159-247 (596)
99 PF03738 GSP_synth: Glutathion 30.3 99 0.0022 22.9 4.2 29 2-30 10-38 (97)
100 PRK06667 motB flagellar motor 25.8 2.5E+02 0.0053 24.8 6.6 54 43-98 160-217 (252)
101 PF03484 B5: tRNA synthetase B 24.6 2.2E+02 0.0048 19.6 4.9 33 9-41 21-53 (70)
102 PRK06778 hypothetical protein; 24.2 1.4E+02 0.0031 27.1 4.9 51 43-96 183-236 (289)
103 PF02127 Peptidase_M18: Aminop 23.3 96 0.0021 30.0 3.7 52 2-54 5-75 (432)
104 TIGR03350 type_VI_ompA type VI 22.7 2.3E+02 0.005 22.2 5.3 52 43-97 61-115 (137)
105 PRK12799 motB flagellar motor 22.6 2.2E+02 0.0048 27.4 5.9 54 43-98 187-244 (421)
106 PRK02256 putative aminopeptida 21.3 2.6E+02 0.0056 27.3 6.2 53 2-54 38-105 (462)
107 PRK09041 motB flagellar motor 21.2 2E+02 0.0044 26.5 5.3 54 43-98 192-249 (317)
108 cd02412 30S_S3_KH K homology R 21.2 2.2E+02 0.0047 21.7 4.7 44 3-49 33-78 (109)
109 smart00853 MutL_C MutL C termi 21.0 2.1E+02 0.0045 22.1 4.8 26 1-26 61-86 (136)
110 PRK06156 hypothetical protein; 20.2 94 0.002 30.6 3.1 25 253-279 240-264 (520)
111 PRK05416 glmZ(sRNA)-inactivati 20.2 99 0.0021 28.1 3.0 28 254-284 165-192 (288)
No 1
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=100.00 E-value=1.4e-51 Score=390.20 Aligned_cols=260 Identities=34% Similarity=0.532 Sum_probs=234.1
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~ 80 (291)
||.++.++++||++||+++|+++++|.+||++++++|.+++.|+|+++||+||||.||.+|+..|++++|++++.|++.+
T Consensus 28 ~s~~~~~a~~~~~~~~~~~Gl~v~~D~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~~~ 107 (406)
T TIGR03176 28 YSPEWLAAQQQFKKRMAESGLETRFDDVGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKEKY 107 (406)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999998777899999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch-hhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (291)
Q Consensus 81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a 159 (291)
. +++++|.++++++||+++|+++++||+.+++.+..+ .+.+.|.+|+++.++|.+.|++++. +.+ ....+.+
T Consensus 108 ~--~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~--~~~---~~~~~~~ 180 (406)
T TIGR03176 108 G--APLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRK--APT---VRDDIKA 180 (406)
T ss_pred C--CCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccc--ccc---cccccce
Confidence 8 899999999999999999999999999999977654 5688999999999999999997642 111 1236889
Q ss_pred EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
|+|+|+|||++++..+..++++++++|..|++|+|+|+++|||+.||..++|||.+|++++.+|+++..+.
T Consensus 181 ~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~~--------- 251 (406)
T TIGR03176 181 FVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKEI--------- 251 (406)
T ss_pred EEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999766674456999999999999998875431
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
..+.++|+|.|++||++.|+||++|+ +.+|+|+.+..
T Consensus 252 ---------~~~~~~tvG~I~~gg~~~NvIP~~a~-~~~DiR~~~~~ 288 (406)
T TIGR03176 252 ---------GDPLVLTFGKVEPVPNTVNVVPGETT-FTIDCRHTDAA 288 (406)
T ss_pred ---------CCCcEEEEEEEEEcCCceEEECCeEE-EEEEeeCCCHH
Confidence 24568999999976699999999999 99999998754
No 2
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=7.2e-50 Score=393.71 Aligned_cols=264 Identities=41% Similarity=0.654 Sum_probs=236.4
Q ss_pred CCHhHHHHHHHHHHHHHHcCCe-EEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHc
Q 022852 1 MSPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKST 79 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~-v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~ 79 (291)
||.++.++++||.+||+++|++ |++|.+|||+++++|.+++.|+|+++||+||||.+|.+||..||+++|++++.|++.
T Consensus 209 ~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~~ 288 (591)
T PRK13799 209 LSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHEQ 288 (591)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHHc
Confidence 6889999999999999999998 999999999999998766789999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852 80 GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (291)
Q Consensus 80 ~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a 159 (291)
++ +++++|.|+++++||+.+|+.+|+||+.++|.+..+.+..+|.+|+++.+.|.+.|+.++. +.+....++.+.+
T Consensus 289 ~~--~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~--~~~~~~~~~~~~a 364 (591)
T PRK13799 289 GE--RLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDA--IPKIARDPADVLG 364 (591)
T ss_pred CC--CCCCCeEEEEecCCCccCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhh--ccccccCCCCccE
Confidence 98 8999999999999999999999999999999777777788899999999999999986542 1111122357889
Q ss_pred EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
|||+||||||+|+..+.++|++++++|..|++|+|+|+++|||+.||..|+|||.++++++..++++..+.
T Consensus 365 ~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--------- 435 (591)
T PRK13799 365 FIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--------- 435 (591)
T ss_pred EEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999877887789999999999999999876431
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
+ .+..++|||.|+++|++.|+||++|+ +.+|+|+++..
T Consensus 436 -------~-~~~~v~tVG~I~~~~ga~NvIP~~a~-~~~DiR~~~~e 473 (591)
T PRK13799 436 -------Q-HASLVATMGQLNVPSGSTNVIPGRCQ-FSLDIRAATDE 473 (591)
T ss_pred -------C-CCCcEEEEEEEEecCCCCceECCEEE-EEEEeeCCCHH
Confidence 1 13468999999987678999999999 99999998754
No 3
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=3.5e-49 Score=389.04 Aligned_cols=262 Identities=38% Similarity=0.628 Sum_probs=233.7
Q ss_pred CCHhHHHHHHHHHHHHHHcCC-eEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHc
Q 022852 1 MSPASVRAGNLIRQWMEDAGL-RTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKST 79 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~-~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~ 79 (291)
||.++.++++||++||+++|+ +|++|.+||++++++|.+++.|+|+++||+||||.+|.+||+.|++++|++++.|++.
T Consensus 209 ~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~~ 288 (591)
T PRK13590 209 LTDAHRACAQQISHWMRDCGFDEVHIDAVGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHRQ 288 (591)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeeECCCCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999 9999999999999998766668999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852 80 GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (291)
Q Consensus 80 ~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a 159 (291)
++ .++++|.|+++++||+++|+.+++||+.++|....+++..+|.+|+++.++|.+.|+.++. +.+....++.+.+
T Consensus 289 ~~--~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~--~~~~~~~~~~~~a 364 (591)
T PRK13590 289 GR--RLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDD--IPKLRRDPARYLG 364 (591)
T ss_pred CC--CCCCCeEEEEecCCccccCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhh--ccccccCCCCccE
Confidence 98 7889999999999999999999999999999766677778899999999999999996542 2232233467899
Q ss_pred EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
|||+|||||++|+..+..++++++++|..+++|+|+|+++|||+.||..+.||+.++++++..++++...
T Consensus 365 ~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~---------- 434 (591)
T PRK13590 365 FVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ---------- 434 (591)
T ss_pred EEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----------
Confidence 9999999999999999999999999999999999999999987778666899999999999999986432
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
...+++|+|.|+++|++.|+||++|+ +.+|+|+++..
T Consensus 435 ---------~~~~v~tVG~i~~~Gg~~NVIP~~a~-~~iDiR~~~~e 471 (591)
T PRK13590 435 ---------DGDSVGTVGMLEVPGGSINVVPGRCR-FSLDIRAPTDA 471 (591)
T ss_pred ---------CCCcEEEEEEEEECCCCCceECCEEE-EEEEeeCCCHH
Confidence 13457899999974479999999999 99999998753
No 4
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=7.4e-48 Score=365.90 Aligned_cols=260 Identities=32% Similarity=0.531 Sum_probs=230.1
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~ 80 (291)
||++|.++++||+++|+++|++++++..+|++++++|.+++.|.|+|+||+||||.+|.+|||+|++++|++++.|++.+
T Consensus 35 ~~~~e~~~~~~l~~~l~~~G~~v~~~~~gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~~~ 114 (414)
T PRK12891 35 LTDGDREARDLFVAWARDAGCTVRVDAMGNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALNDAG 114 (414)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999886544589999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch-hhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (291)
Q Consensus 81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a 159 (291)
. +++++|.|++++|||+++|+.++.||+.+.+.+..+ .+...|.+++.+.+.|.+.|+.++.... .+.+.+
T Consensus 115 ~--~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~ 186 (414)
T PRK12891 115 I--ETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVG------GYPVHA 186 (414)
T ss_pred C--CCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccc------cCCCCE
Confidence 8 899999999999999999999999999998876654 4577888999999999999986554322 235678
Q ss_pred EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
|+|+|+||+++++..+...+++++++|..|++|+++|+++||++.|+..|+|||.+++++|.+|+++....
T Consensus 187 ~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~--------- 257 (414)
T PRK12891 187 AYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD--------- 257 (414)
T ss_pred EEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999988889999999999999999999999766884368999999999999999875431
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.++.++|+|.|++|+.+.|+||++|+ +.+|+|+++.++
T Consensus 258 ---------~~~~t~~vg~I~gG~~~~NvVP~~~~-~~~diR~~~~e~ 295 (414)
T PRK12891 258 ---------APDARATVGMIDARPNSRNTVPGECF-FTVEFRHPDDAV 295 (414)
T ss_pred ---------CCCeEEEEEEEEeeCCCcceECCeEE-EEEEeeCCCHHH
Confidence 23579999999998568999999999 999999998653
No 5
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=2.5e-46 Score=354.02 Aligned_cols=261 Identities=38% Similarity=0.626 Sum_probs=225.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~ 80 (291)
+|++|.++++||+++|+++|++++++..+||+|+++|..++.|.|+++||+||||.+|.+|++.|++++|++++.|++.+
T Consensus 26 ~~~~e~~~~~~l~~~~~~~G~~~~~~~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~~g 105 (401)
T TIGR01879 26 LSPEDREAQDLFKKRMRAAGLEVRFDEVGNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKEAY 105 (401)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEecCCcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHHcC
Confidence 58899999999999999999999999999999999876544589999999999999999999999999999999999998
Q ss_pred CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhh-hccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL-RVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (291)
Q Consensus 81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~-~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a 159 (291)
. +++++|.|++++|||+++|+.++.||+.+++....+.. .+.|.+|.++.+.|.+.|... ..+.++ .+..+.+
T Consensus 106 ~--~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~--~~~~~~--~~~~~~~ 179 (401)
T TIGR01879 106 V--VPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDL--PNQPLR--PRGDIKA 179 (401)
T ss_pred C--CCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCc--cccccc--ccccccE
Confidence 8 89999999999999998999999999999886654333 346667888888888887432 212221 1235779
Q ss_pred EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
|||+|||||++++..+...+++++++|..|++|+|+|+++|+++.||..|+|||.++++++.+|+++..+.
T Consensus 180 ~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~--------- 250 (401)
T TIGR01879 180 YVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM--------- 250 (401)
T ss_pred EEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999999999999999766774478999999999999999886431
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
..+.+.++|.|++|+.+.|+||++|+ +.+|+|++|..
T Consensus 251 ---------~~~~~~~vg~i~~g~~~~NvVP~~a~-~~~diR~~p~~ 287 (401)
T TIGR01879 251 ---------GDPTVGTVGKVEARPNGVNVIPGKVT-FTLDLRHTDAA 287 (401)
T ss_pred ---------CCCeEEEEEEEEecCCceEEECCEEE-EEEEeeCCCHH
Confidence 13457899999997678999999999 99999998854
No 6
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.9e-43 Score=335.21 Aligned_cols=260 Identities=40% Similarity=0.629 Sum_probs=222.5
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~ 80 (291)
+|++|.++++||.++|+++|++++++..+|++++++|..+ .|.|+|+||+||||.+|..|+++|++++|.+++.|++.+
T Consensus 34 ~~~~e~~~~~~l~~~l~~~G~~~~~~~~~nl~a~~~g~~~-~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~~~ 112 (412)
T PRK12892 34 YSDAHVAARRRLAAWCEAAGLAVRIDGIGNVFGRLPGPGP-GPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNEHG 112 (412)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCC-CCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999888999999987654 388999999999999999999999999999999999988
Q ss_pred CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchh-hhccC-CCCCcHHHHHHHCCCChhhHHhhhhcCCCCcee
Q 022852 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSA-LRVSD-KSGVTVLDALRENSIDIAEESLLQLKYDPASVW 158 (291)
Q Consensus 81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~-~~~~d-~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (291)
. .++++|.|++++|||+++|+.++.|++.+++++..+. ....+ .++..+.+.|.+.|+.+|...+.| |..+.
T Consensus 113 ~--~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~e----p~~~~ 186 (412)
T PRK12892 113 I--ATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAAD----RARPK 186 (412)
T ss_pred C--CCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhccccc----ccCcc
Confidence 7 7899999999999999888888889999987654322 22222 346677888888898887666655 44677
Q ss_pred eEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 022852 159 GYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDG 238 (291)
Q Consensus 159 a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~ 238 (291)
+++|+|+|+++.+++.+...+++++++|..|++|+++|+++|+++.|++.|+|||.++++++.+|+++..+.
T Consensus 187 ~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~-------- 258 (412)
T PRK12892 187 GYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRV-------- 258 (412)
T ss_pred EEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc--------
Confidence 899999999999998887778999999999999999999999766783368999999999999999875431
Q ss_pred CCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 239 RSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
..++++++|.|++|+.+.|+||++|+ +.+|+|+++..
T Consensus 259 ----------~~~~~~~vg~i~gg~~~~NvIP~~a~-~~~diR~~p~~ 295 (412)
T PRK12892 259 ----------CGPAVVTVGRVALDPGSPSIIPGRVE-FSFDARHPSPP 295 (412)
T ss_pred ----------CCCcEEEEEEEEecCCCCeEECCeEE-EEEEeeCCCHH
Confidence 23579999999987579999999999 99999998754
No 7
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.7e-42 Score=326.78 Aligned_cols=261 Identities=42% Similarity=0.651 Sum_probs=221.0
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~ 80 (291)
+|++|.++++||.++|+++|++++++..+|++|+++|..++.|.|+|+||+||||.+|..|||+|++++|++++.|++.+
T Consensus 33 ~~~~e~~~~~~l~~~l~~~G~~~~~~~~~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~~~ 112 (414)
T PRK12890 33 LSDEERAARALLAAWMRAAGLEVRRDAAGNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALREAG 112 (414)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEcCCCcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 37899999999999999999999988889999999875444689999999999999999999999999999999999888
Q ss_pred CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch-hhhccCCCCCcHHHHHHHCCCChhhHHh--hhhcCCCCce
Q 022852 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS-ALRVSDKSGVTVLDALRENSIDIAEESL--LQLKYDPASV 157 (291)
Q Consensus 81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~-~~~~~d~~g~~~~e~l~~~g~~~~~~~~--~~~~~~~~~i 157 (291)
. .++++|.|++++|||+++|+.++.|++.+.+.+... .+...+.++..+.+.+.+.|+.++.... .+ |..+
T Consensus 113 ~--~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e----p~~~ 186 (414)
T PRK12890 113 I--RPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRP----PGAV 186 (414)
T ss_pred C--CCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC----CCCc
Confidence 6 789999999999999988888889999887765532 3344566777888888888887654221 22 3356
Q ss_pred eeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccC
Q 022852 158 WGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYD 237 (291)
Q Consensus 158 ~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~ 237 (291)
.+|+++|+++|+.++..+...+++.+++|..|++|+++|+++|+++.|++.|+|||..+++++.+|+++..+.
T Consensus 187 ~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~------- 259 (414)
T PRK12890 187 AAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL------- 259 (414)
T ss_pred cEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-------
Confidence 7899999999998887777778889999999999999999999655683355899999999999999976431
Q ss_pred CCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 238 GRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
.++.++++|.|++|+.+.|+||++|+ +.+|+|+++..
T Consensus 260 -----------~~~~~~~~g~i~~gg~~~NvIP~~a~-~~~diR~~p~~ 296 (414)
T PRK12890 260 -----------LHDLVATVGRLDVEPNAINVVPGRVV-FTLDLRSPDDA 296 (414)
T ss_pred -----------CCCeEEEEEEEEECCCCceEECCeEE-EEEEeeCCCHH
Confidence 14678999999986589999999999 99999998854
No 8
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.8e-41 Score=319.58 Aligned_cols=258 Identities=40% Similarity=0.660 Sum_probs=214.5
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCC
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGK 81 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~~ 81 (291)
|++|.++++||+++|+++|++++++..+|++++++|..+..|.|+|.||+||||.+|..|||+|++++|.+++.|++.+.
T Consensus 36 s~~e~~~~~~l~~~l~~~G~~~~~~~~~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~~~~ 115 (412)
T PRK12893 36 TDEDREARDLLAQWMEEAGLTVSVDAIGNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLNDAGI 115 (412)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999888889999998754335899999999999999999999999999999999999886
Q ss_pred CCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhh-hccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeE
Q 022852 82 LGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL-RVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGY 160 (291)
Q Consensus 82 ~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~-~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~ 160 (291)
.++++|.|+|++|||+++|+.++.|++.+.+....+.+ ...+.++..+.+.+.+.++.++...+ ++.+.+|
T Consensus 116 --~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 187 (412)
T PRK12893 116 --RTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVG------RRAVDAY 187 (412)
T ss_pred --CCCCCeEEEEEccccccccccccccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccc------cCCccEE
Confidence 78999999999999998887788899988766443321 22333556666666677765532111 2346789
Q ss_pred EEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 161 IEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMS-MRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 161 ~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~-~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
+|+|+++|+.+++......++++++|..|++|+++|+++|+++.| + .|+|||.++++++.+|+++..+.
T Consensus 188 ~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p-~~~G~NAI~~a~~~i~~l~~~~~~~--------- 257 (412)
T PRK12893 188 LELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTP-MAMRRDALVAAARIILAVERIAAAL--------- 257 (412)
T ss_pred EEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCc-chhccCHHHHHHHHHHHHHHHHHhc---------
Confidence 999999998888777777888999999999999999999965468 5 79999999999999999876431
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.+..++++|.|++|+.+.|+||++|+ +.+|+|++|..+
T Consensus 258 ---------~~~~~~~vg~i~ggg~~~NvVP~~a~-~~~diR~~p~~~ 295 (412)
T PRK12893 258 ---------APDGVATVGRLRVEPNSRNVIPGKVV-FTVDIRHPDDAR 295 (412)
T ss_pred ---------CCCceEEEEEEEeeCCCceEECCeeE-EEEEeeCCCHHH
Confidence 23578999999986579999999999 999999988543
No 9
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=3.4e-40 Score=313.25 Aligned_cols=263 Identities=43% Similarity=0.704 Sum_probs=214.7
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTG 80 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~ 80 (291)
.|++|.++++||+++|+++|++++.+..+|++|+++|..+..|.|+|+||+||||.+|..|||+|++++|.+++.|++.+
T Consensus 32 ~s~~e~~~a~~l~~~l~~~g~~~~~~~~~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~~~ 111 (413)
T PRK09290 32 LSPEDLQARDLFAEWMEAAGLTVRVDAVGNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNERG 111 (413)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEcCCCcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 37889999999999999999999988889999999764323578999999999999999999999999999999999988
Q ss_pred CCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhh-hccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceee
Q 022852 81 KLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSAL-RVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWG 159 (291)
Q Consensus 81 ~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~-~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a 159 (291)
. .++++|.|++++|||.+++|.++.|++.+.+.+.++.+ ...|.++..+.+.|.+.|+.+|..++++ ..|..+.+
T Consensus 112 ~--~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~--~ept~~~~ 187 (413)
T PRK09290 112 I--RPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAA--RARRDIKA 187 (413)
T ss_pred C--CCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccc--cCCCCccE
Confidence 6 78899999999999987666667799888765543322 2234556677777777787776543320 01445667
Q ss_pred EEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCC
Q 022852 160 YIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGR 239 (291)
Q Consensus 160 ~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~ 239 (291)
++++|++++.++++++....++++++|..|++|+++||++|+++.|.+.|+|||.++++++.+|+++..+.
T Consensus 188 ~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~--------- 258 (413)
T PRK09290 188 FVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH--------- 258 (413)
T ss_pred EEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc---------
Confidence 88899998888888877667889999999999999999999644783378999999999999999876431
Q ss_pred CCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 240 SNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
..+.++++|.|++|+.+.|+||++|+ +.+|+|++|..
T Consensus 259 ---------~~~~~~~~g~i~~g~~~~NvIP~~a~-~~~diR~~p~e 295 (413)
T PRK09290 259 ---------GPDLVATVGRLEVKPNSVNVIPGEVT-FTLDIRHPDDA 295 (413)
T ss_pred ---------CCCeEEEEEEEEEcCCCCeEECCEEE-EEEEEeCCCHH
Confidence 13568999999986578999999999 99999998754
No 10
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=2.7e-33 Score=267.45 Aligned_cols=218 Identities=20% Similarity=0.290 Sum_probs=168.6
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEE-cccccEEEEEeCCCCCCCEEEEcccCCCCCCC------------C---CCCcHH
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWV-DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------G---IFDGSL 64 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~-d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------g---~~D~~~ 64 (291)
+|++|.+++++|+++|+++|+++++ +...||+|++. .. ..|.|+|.||+|+||.. | ++|+|+
T Consensus 62 ~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g-~~-~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg 139 (437)
T PLN02693 62 LGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIG-TG-EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDG 139 (437)
T ss_pred CCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEEC-CC-CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchH
Confidence 5899999999999999999999764 34568999984 22 35899999999999853 1 356777
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhh
Q 022852 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (291)
Q Consensus 65 gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~ 144 (291)
+++++|++++.|++.+. .++++|.|+|++|||+.. |++.+. +.|...
T Consensus 140 ~~A~~l~Aa~~L~~~~~--~~~g~V~~if~pdEE~~~------Ga~~~i-----------------------~~g~~~-- 186 (437)
T PLN02693 140 HVAMLLGAAKILQEHRH--HLQGTVVLIFQPAEEGLS------GAKKMR-----------------------EEGALK-- 186 (437)
T ss_pred HHHHHHHHHHHHHhCcc--cCCceEEEEEEEcccchh------hHHHHH-----------------------HCCCCC--
Confidence 88888999999998865 678999999999999632 776542 233311
Q ss_pred HHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 022852 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (291)
Q Consensus 145 ~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~ 224 (291)
...+.+-.|.+|....+......|.+ ++|..+++|+++|+++| +|.| +.|+|||.+++++|.+|+
T Consensus 187 -----------~~~~iig~h~~p~~~~g~~~~~~g~~--~~G~~~~~i~v~Gk~aH-aa~P-~~G~nAI~~aa~~i~~l~ 251 (437)
T PLN02693 187 -----------NVEAIFGIHLSPRTPFGKAASRAGSF--MAGAGVFEAVITGKGGH-AAIP-QHTIDPVVAASSIVLSLQ 251 (437)
T ss_pred -----------CCCEEEEEecCCCCCCeeEEeccCcc--cccceEEEEEEEccccc-CCCC-CCCcCHHHHHHHHHHHHH
Confidence 11233337887754333222222333 68999999999999999 5789 999999999999999999
Q ss_pred HHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeE
Q 022852 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLL 285 (291)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~ 285 (291)
++..+..+ + ..+.++|+|.|+|| .+.|+||++|+ +.+|+|+++.
T Consensus 252 ~~~~~~~~--------------~-~~~~ti~vg~i~GG-~~~NvVPd~a~-~~~diR~~~~ 295 (437)
T PLN02693 252 QLVSRETD--------------P-LDSKVVTVSKVNGG-NAFNVIPDSIT-IGGTLRAFTG 295 (437)
T ss_pred HHhcccCC--------------C-CCCcEEEEEEEEcC-CCCceECCeEE-EEEEEecCCH
Confidence 98644211 2 35789999999999 99999999999 9999999874
No 11
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=2.3e-32 Score=263.19 Aligned_cols=217 Identities=18% Similarity=0.221 Sum_probs=164.5
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEc-ccccEEEEEeCCCCCCCEEEEcccCCCCCCC-----------------CCCCc
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVD-HLGNVHGRVEGLNASAQALLIGSHLDTVVDA-----------------GIFDG 62 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d-~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-----------------g~~D~ 62 (291)
+|++|.+++++|+++|+++|+++++. ...|++|++ |... .|.|+|.||+|+||.+ |++|+
T Consensus 112 ls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~ 189 (478)
T PLN02280 112 LAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWI-GTGG-PPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA 189 (478)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEE-CCCC-CCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH
Confidence 47899999999999999999998763 345799998 4332 3899999999999952 45555
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCCh
Q 022852 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDI 142 (291)
Q Consensus 63 ~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~ 142 (291)
+++++|+++++|++.+. +++++|.|+|++|||.+. |++.+. +.|...
T Consensus 190 --~~A~~l~a~~~L~~~~~--~~~g~V~~if~pdEE~g~------Ga~~li-----------------------~~g~~~ 236 (478)
T PLN02280 190 --HVAMLLGAAKILKSREH--LLKGTVVLLFQPAEEAGN------GAKRMI-----------------------GDGALD 236 (478)
T ss_pred --HHHHHHHHHHHHHhccc--cCCceEEEEecccccccc------hHHHHH-----------------------HCCCCc
Confidence 66777999999988776 688999999999999843 777542 233211
Q ss_pred hhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHH
Q 022852 143 AEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVL 222 (291)
Q Consensus 143 ~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~ 222 (291)
.+.+.+.+|+.+..+.+..+...+.. ++|..|++|+++||++| ++.| +.|+|||.+|++++.+
T Consensus 237 -------------~~d~~~~~h~~~~~p~g~ig~~~~~~--~~G~~~~~I~v~Gk~aH-as~P-~~G~NAI~~aa~li~~ 299 (478)
T PLN02280 237 -------------DVEAIFAVHVSHEHPTAVIGSRPGPL--LAGCGFFRAVISGKKGR-AGSP-HHSVDLILAASAAVIS 299 (478)
T ss_pred -------------CCCEEEEEecCCCCCCceeEeccccc--ccceeEEEEEEECcchh-cCCc-ccCcCHHHHHHHHHHH
Confidence 11233337864321111112222332 67999999999999999 5799 9999999999999999
Q ss_pred HHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 223 LERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
|+++..+... + ....++++|.|+|| .+.|+||++|+ +.+|+|+++..
T Consensus 300 l~~l~~r~~~--------------~-~~~~tvnvg~I~GG-~~~NvIPd~~~-l~~diR~~~~e 346 (478)
T PLN02280 300 LQGIVSREAN--------------P-LDSQVVSVTTMDGG-NNLDMIPDTVV-LGGTFRAFSNT 346 (478)
T ss_pred HHHHHhcccC--------------C-CCCcEEEEEEEEcc-CCCCEeCCEEE-EEEEEecCCHH
Confidence 9988644211 2 25679999999998 99999999999 99999998743
No 12
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=7.3e-32 Score=256.72 Aligned_cols=221 Identities=18% Similarity=0.221 Sum_probs=167.4
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEc---------------------ccccEEEEEeCCCCCCCEEEEcccCCCCCCC--
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVD---------------------HLGNVHGRVEGLNASAQALLIGSHLDTVVDA-- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d---------------------~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-- 57 (291)
.|++|.++++||+++|+++|+++++. ..+||+|+++|..+ .|.|+|.+|+||||.+
T Consensus 32 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~l~l~~H~Dtvp~~~~ 110 (422)
T PRK06915 32 VSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSGG-GKSMILNGHIDVVPEGDV 110 (422)
T ss_pred CCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcCCCC-CCeEEEEeeccccCCCCc
Confidence 36889999999999999999987531 24789999977543 5899999999999963
Q ss_pred --------------------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc
Q 022852 58 --------------------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (291)
Q Consensus 58 --------------------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (291)
|..|||+|++++|.+++.|++.+. +++++|.|+|++|||.++ .|+..+.
T Consensus 111 ~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~g~-----~G~~~~~---- 179 (422)
T PRK06915 111 NQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGI--ELKGDVIFQSVIEEESGG-----AGTLAAI---- 179 (422)
T ss_pred ccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCC--CCCCcEEEEEecccccCC-----cchHHHH----
Confidence 445999999999999999998876 788999999999999732 2554321
Q ss_pred chhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEec
Q 022852 118 VSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS 197 (291)
Q Consensus 118 ~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk 197 (291)
..++.+ +. + +..||. . ..++.+++|..+++|+++|+
T Consensus 180 -------------------~~~~~~------------d~--~---i~~ep~------~--~~i~~~~~G~~~~~i~v~G~ 215 (422)
T PRK06915 180 -------------------LRGYKA------------DG--A---IIPEPT------N--MKFFPKQQGSMWFRLHVKGK 215 (422)
T ss_pred -------------------hcCcCC------------CE--E---EECCCC------C--ccceeecccEEEEEEEEEee
Confidence 122221 11 1 222332 2 23567899999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEE
Q 022852 198 QGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLS 277 (291)
Q Consensus 198 ~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~ 277 (291)
++| +|.| +.|+|||.++++++.+|+++...... +.....+.....+.++|++.|+|| .+.|+||++|+ +.
T Consensus 216 ~~H-~s~p-~~g~nAi~~~~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~t~~v~~i~gG-~~~nvvP~~a~-~~ 285 (422)
T PRK06915 216 AAH-GGTR-YEGVSAIEKSMFVIDHLRKLEEKRND------RITDPLYKGIPIPIPINIGKIEGG-SWPSSVPDSVI-LE 285 (422)
T ss_pred ccc-cCCC-CcCcCHHHHHHHHHHHHHHHHHHhcc------ccCCCcccCCCCCceEeEEEeeCC-CCCCccCcEEE-EE
Confidence 999 5799 99999999999999999987642110 000000000113568999999999 89999999999 99
Q ss_pred eecceeeEEe
Q 022852 278 LDDGYFLLYS 287 (291)
Q Consensus 278 ~D~r~~~~~~ 287 (291)
+|+|++|.+.
T Consensus 286 ~d~R~~p~~~ 295 (422)
T PRK06915 286 GRCGIAPNET 295 (422)
T ss_pred EEEEECCCCC
Confidence 9999998764
No 13
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=6.8e-32 Score=253.21 Aligned_cols=215 Identities=20% Similarity=0.295 Sum_probs=168.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcc----cccEEEEEeCCCCCCCEEEEcccCCCCCCC-------------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDH----LGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~----~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------- 57 (291)
.|++|.++++||.++|+++|++++..+ ..|+++++ |.. .|.|+|.||+||||.+
T Consensus 17 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l 93 (377)
T PRK08588 17 VNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKL 93 (377)
T ss_pred CCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEE
Confidence 367899999999999999999987543 35899998 432 3899999999999973
Q ss_pred ---CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHH
Q 022852 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (291)
Q Consensus 58 ---g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~ 134 (291)
|..|||+|++++|.+++.|++.+. .++++|.|+|++|||.+. .|++.+..
T Consensus 94 ~GrG~~D~Kgg~aa~l~a~~~l~~~~~--~~~~~i~l~~~~dEE~g~-----~G~~~~~~-------------------- 146 (377)
T PRK08588 94 YGRGATDMKSGLAALVIAMIELKEQGQ--LLNGTIRLLATAGEEVGE-----LGAKQLTE-------------------- 146 (377)
T ss_pred EecCcccccchHHHHHHHHHHHHHcCC--CCCCcEEEEEEcccccCc-----hhHHHHHh--------------------
Confidence 345999999999999999999887 788999999999999732 37775431
Q ss_pred HHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHH
Q 022852 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (291)
Q Consensus 135 l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~ 214 (291)
.++.. +.+ +. +..||+ ...++.+++|..+++|+++|+++|| +.| +.|+|||.
T Consensus 147 ---~~~~~----------~~d---~~--i~~ep~--------~~~i~~~~~G~~~~~i~~~G~~~Hs-s~p-~~g~nAi~ 198 (377)
T PRK08588 147 ---KGYAD----------DLD---AL--IIGEPS--------GHGIVYAHKGSMDYKVTSTGKAAHS-SMP-ELGVNAID 198 (377)
T ss_pred ---cCccC----------CCC---EE--EEecCC--------CceeEEEEEEEEEEEEEEEeechhc-cCC-ccccCHHH
Confidence 22210 011 11 222332 2346678999999999999999995 799 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
++++++..|+++...... .++..+.++++++.|+|| .+.|+||++|+ +.+|+|+.|.++
T Consensus 199 ~~~~~l~~l~~~~~~~~~------------~~~~~~~~t~~v~~i~gG-~~~nvip~~~~-~~~d~R~~p~~~ 257 (377)
T PRK08588 199 PLLEFYNEQKEYFDSIKK------------HNPYLGGLTHVVTIINGG-EQVNSVPDEAE-LEFNIRTIPEYD 257 (377)
T ss_pred HHHHHHHHHHHHhhhhcc------------cCccCCCCceeeeEEeCC-CcCCcCCCeEE-EEEEeccCCCCC
Confidence 999999999987543211 001245789999999998 89999999999 999999998765
No 14
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=251.19 Aligned_cols=222 Identities=21% Similarity=0.258 Sum_probs=169.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEE---cccccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWV---DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~---d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------------- 57 (291)
.|++|.+++++|.++|+++|++++. +..+|+++++ |. ..|.|+|.||+||||.+
T Consensus 17 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iy 93 (375)
T PRK13009 17 VTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLY 93 (375)
T ss_pred CCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEe-cC--CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEE
Confidence 3678999999999999999999874 3467899988 54 35899999999999964
Q ss_pred --CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHH
Q 022852 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDAL 135 (291)
Q Consensus 58 --g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l 135 (291)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.++ ..|++.+. +.+
T Consensus 94 GrG~~D~Kgg~aa~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~~~----~~G~~~~~-------------------~~~ 148 (375)
T PRK13009 94 GRGAADMKGSLAAFVVAAERFVAAHP--DHKGSIAFLITSDEEGPA----INGTVKVL-------------------EWL 148 (375)
T ss_pred ecCCccChHHHHHHHHHHHHHHHhcC--CCCceEEEEEEeeccccc----ccCHHHHH-------------------HHH
Confidence 445999999999999999988876 788999999999999742 23777542 222
Q ss_pred HHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHH
Q 022852 136 RENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTA 215 (291)
Q Consensus 136 ~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~ 215 (291)
.+.+..+| . + +..||... ......+..+++|..+++|+++|+++|| +.| +.|.|||.+
T Consensus 149 ~~~~~~~d------------~--~---i~~ep~~~---~~~~~~i~~g~~g~~~~~i~v~G~~~Ha-~~p-~~g~nAi~~ 206 (375)
T PRK13009 149 KARGEKID------------Y--C---IVGEPTST---ERLGDVIKNGRRGSLTGKLTVKGVQGHV-AYP-HLADNPIHL 206 (375)
T ss_pred HHcCcCCC------------E--E---EEcCCCcc---cCCCCeEEEecceEEEEEEEEEecCccc-CCC-CcccCHHHH
Confidence 22232221 1 1 22243311 0111235678999999999999999995 689 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 216 AAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 216 aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++++.+|+.+..+... +..++.+++++.|++|+.+.|+||++|+ +.+|+|+.|..+
T Consensus 207 ~~~~l~~l~~~~~~~~~--------------~~~~~~~~~i~~i~~G~~~~nvip~~~~-~~~diR~~~~~~ 263 (375)
T PRK13009 207 AAPALAELAATEWDEGN--------------EFFPPTSLQITNIDAGTGATNVIPGELE-AQFNFRFSTEHT 263 (375)
T ss_pred HHHHHHHHHhhhccCCC--------------ccCCCceEEEEEEecCCCCCcccCCcEE-EEEEEecCCCCC
Confidence 99999999876432110 1245678999999998447899999999 999999988654
No 15
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=2e-31 Score=248.90 Aligned_cols=217 Identities=25% Similarity=0.337 Sum_probs=174.4
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEccc-cc-EEEEEeCCCCCCCEEEEcccCCCCC-----------------CCCCCC
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHL-GN-VHGRVEGLNASAQALLIGSHLDTVV-----------------DAGIFD 61 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~-gn-v~a~~~g~~~~~~~l~l~sH~DtV~-----------------~~g~~D 61 (291)
+|.+|.++++||+++|+++|+++..... .+ ++|+++|..+ +|+|.|-+-||..| |+|+||
T Consensus 27 L~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~-g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD 105 (392)
T COG1473 27 LGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKP-GPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD 105 (392)
T ss_pred cchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCC-CCEEEEEeecccCccccccCCCcccCCCCCcccCCch
Confidence 6899999999999999999999443332 34 9999986543 45888888888777 789999
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCC
Q 022852 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSID 141 (291)
Q Consensus 62 ~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~ 141 (291)
+|++++ |+++++|++... +++++|+|+|+|+||+++ |++.++ +.|..
T Consensus 106 ~Hta~l--LgaA~~L~~~~~--~~~Gtv~~ifQPAEE~~~------Ga~~mi-----------------------~~G~~ 152 (392)
T COG1473 106 GHTAIL--LGAALALAEHKD--NLPGTVRLIFQPAEEGGG------GAKAMI-----------------------EDGVF 152 (392)
T ss_pred HHHHHH--HHHHHHHHhhhh--hCCcEEEEEecccccccc------cHHHHH-----------------------hcCCc
Confidence 999999 999999998754 789999999999999854 766442 34532
Q ss_pred hhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHH
Q 022852 142 IAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIV 221 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~ 221 (291)
-+ + +++.+-+|+.|+.+.+......|.+ ..+...++|+|+||++| ++.| +.++||+.+++.++.
T Consensus 153 ~~--------~----vD~v~g~H~~p~~~~g~v~~~~G~~--~aa~d~~~i~~~GkggH-~a~P-h~~~d~i~aa~~~v~ 216 (392)
T COG1473 153 DD--------F----VDAVFGLHPGPGLPVGTVALRPGAL--MAAADEFEITFKGKGGH-AAAP-HLGIDALVAAAQLVT 216 (392)
T ss_pred cc--------c----ccEEEEecCCCCCCCceEEeecccc--eeecceEEEEEEeCCcc-cCCc-ccccCHHHHHHHHHH
Confidence 11 1 3344449998873344444455544 77899999999999999 5999 999999999999999
Q ss_pred HHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceee
Q 022852 222 LLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFL 284 (291)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~ 284 (291)
.|+.+..+..+ | ....++++|++++| ++.||||++++ +..++|.+.
T Consensus 217 ~lq~ivsr~~~--------------p-~~~~vv~vg~~~aG-~a~NVIpd~A~-l~gtvR~~~ 262 (392)
T COG1473 217 ALQTIVSRNVD--------------P-LDSAVVTVGKIEAG-TAANVIPDSAE-LEGTIRTFS 262 (392)
T ss_pred HHHHHHhcccC--------------C-ccCeEEEEEEecCC-CcCCcCCCeeE-EEEEeecCC
Confidence 99999877533 3 24689999999999 89999999999 999999875
No 16
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=2.2e-31 Score=250.08 Aligned_cols=203 Identities=21% Similarity=0.199 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEcc----c-ccEEEEEeCCCCCCCEEEEcccCCCCCCC------------------CCCCc
Q 022852 6 VRAGNLIRQWMEDAGLRTWVDH----L-GNVHGRVEGLNASAQALLIGSHLDTVVDA------------------GIFDG 62 (291)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~----~-gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------g~~D~ 62 (291)
.++++||.++|+++|++++... . .|+++++++...+.|.|+|.||+||||+. |..||
T Consensus 34 ~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~ 113 (376)
T PRK07473 34 NRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDM 113 (376)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhc
Confidence 3677899999999999987632 2 26899986543345899999999999642 56799
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCCh
Q 022852 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDI 142 (291)
Q Consensus 63 ~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~ 142 (291)
|+|++++|.|+++|++.+. .++.+|.|+|++|||.+. .|++.+.. +....
T Consensus 114 Kgglaa~l~A~~~l~~~~~--~~~~~v~~~~~~dEE~g~-----~g~~~~~~----------------------~~~~~- 163 (376)
T PRK07473 114 KGGNYLALEAIRQLARAGI--TTPLPITVLFTPDEEVGT-----PSTRDLIE----------------------AEAAR- 163 (376)
T ss_pred hHHHHHHHHHHHHHHHcCC--CCCCCEEEEEeCCcccCC-----ccHHHHHH----------------------Hhhcc-
Confidence 9999999999999998876 667899999999999842 36664421 11111
Q ss_pred hhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHH
Q 022852 143 AEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVL 222 (291)
Q Consensus 143 ~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~ 222 (291)
++ ++ +..||+ ....+++++++|..|++|+++|+++|||++| +.|+|||.++++++.+
T Consensus 164 -----------~d--~~---iv~ep~------~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p-~~g~nAi~~~~~~i~~ 220 (376)
T PRK07473 164 -----------NK--YV---LVPEPG------RPDNGVVTGRYAIARFNLEATGRPSHAGATL-SEGRSAIREMARQILA 220 (376)
T ss_pred -----------CC--EE---EEeCCC------CCCCCEEEECeeeEEEEEEEEeEcCCCCCCc-ccCcCHHHHHHHHHHH
Confidence 11 12 444553 2234678899999999999999999987899 8999999999999999
Q ss_pred HHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceee
Q 022852 223 LERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFL 284 (291)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~ 284 (291)
|+++.. ...++|+|.|++| .+.|+||++|+ +.+|.|...
T Consensus 221 l~~~~~---------------------~~~~~~vg~i~gg-~~~n~VP~~~~-~~~d~r~~~ 259 (376)
T PRK07473 221 IDAMTT---------------------EDCTFSVGIVHGG-QWVNCVATTCT-GEALSMAKR 259 (376)
T ss_pred HHHhcC---------------------CCceEeEeeEEcC-CCCcCCCCceE-EEEEEEeCC
Confidence 988642 2468999999999 88999999999 999998754
No 17
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.98 E-value=5.3e-31 Score=246.62 Aligned_cols=222 Identities=21% Similarity=0.263 Sum_probs=167.6
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEc---ccccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d---~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------------- 57 (291)
.|++|.++++||.++|+++||+++.. ..+|+++++ |. ..|.|+|.||+||||.+
T Consensus 14 ~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~y 90 (370)
T TIGR01246 14 VTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLY 90 (370)
T ss_pred CCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEE
Confidence 36789999999999999999997653 457899986 33 35899999999999874
Q ss_pred --CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHH
Q 022852 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDAL 135 (291)
Q Consensus 58 --g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l 135 (291)
|..|||++++++|.+++.|++.+. +++++|.|+|++|||.++ ..|++.+. +.+
T Consensus 91 GrG~~D~Kgg~a~~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~~~----~~G~~~~~-------------------~~~ 145 (370)
T TIGR01246 91 GRGAADMKGSLAAFIVAAERFVKKNP--DHKGSISLLITSDEEGTA----IDGTKKVV-------------------ETL 145 (370)
T ss_pred ecccccchHHHHHHHHHHHHHHHhcC--CCCCcEEEEEEeccccCC----CcCHHHHH-------------------HHH
Confidence 345999999999999999988776 788999999999999742 23777542 112
Q ss_pred HHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHH
Q 022852 136 RENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTA 215 (291)
Q Consensus 136 ~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~ 215 (291)
.+.+..+ +.+ +..||+.... ....++++++|..+++++++|+++|+ +.| +.|.|||.+
T Consensus 146 ~~~~~~~------------d~~-----i~~ep~~~~~---~~~~i~~~~~G~~~~~v~v~G~~~H~-~~p-~~g~nAi~~ 203 (370)
T TIGR01246 146 MARDELI------------DYC-----IVGEPSSVKK---LGDVIKNGRRGSITGNLTIKGIQGHV-AYP-HLANNPIHK 203 (370)
T ss_pred HhcCCCC------------CEE-----EEcCCCCccc---CCceEEEeeeEEEEEEEEEEccCccc-CCc-ccCCCHHHH
Confidence 2222211 111 2235432111 11135678999999999999999995 689 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 216 AAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 216 aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++++..|+........ +...+++++++.|++|..+.|+||++|+ +.+|+|+.|.++
T Consensus 204 ~~~~i~~l~~~~~~~~~--------------~~~~~~t~~i~~i~~g~~~~nvvP~~~~-~~~diR~~~~~~ 260 (370)
T TIGR01246 204 AAPALAELTAIKWDEGN--------------EFFPPTSLQITNIHAGTGANNVIPGELY-VQFNLRFSTEVS 260 (370)
T ss_pred HHHHHHHHhhhhhccCC--------------ccCCCCceEeeeeecCCCCCcccCCceE-EEEEEecCCCCC
Confidence 99999999875332100 1245779999999998447899999999 999999988654
No 18
>PRK07338 hypothetical protein; Provisional
Probab=99.98 E-value=3.2e-31 Score=250.79 Aligned_cols=206 Identities=23% Similarity=0.204 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEccc------------------ccEEEEEeCCCCCCCEEEEcccCCCCCCC---------
Q 022852 5 SVRAGNLIRQWMEDAGLRTWVDHL------------------GNVHGRVEGLNASAQALLIGSHLDTVVDA--------- 57 (291)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d~~------------------gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------- 57 (291)
+.++++||+++|+++|++++..+. .||+|++++.. .+.|+|+||+||||++
T Consensus 39 ~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~ 116 (402)
T PRK07338 39 LARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSW 116 (402)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeE
Confidence 468999999999999998775321 48999996532 2579999999999863
Q ss_pred ---------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCC
Q 022852 58 ---------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSG 128 (291)
Q Consensus 58 ---------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g 128 (291)
|..|||+|++++|.|+++|++.+. .++++|.|+|++|||.++ .|++.+.
T Consensus 117 ~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g~-----~g~~~~~--------------- 174 (402)
T PRK07338 117 LDDGTLNGPGVADMKGGIVVMLAALLAFERSPL--ADKLGYDVLINPDEEIGS-----PASAPLL--------------- 174 (402)
T ss_pred eeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCC--CCCCCEEEEEECCcccCC-----hhhHHHH---------------
Confidence 557999999999999999998876 677899999999999842 2555431
Q ss_pred CcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCC
Q 022852 129 VTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSM 208 (291)
Q Consensus 129 ~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~ 208 (291)
. +.... ..++ ++.||+.. ...++.+++|..+++|+++|+++||+..| +.
T Consensus 175 ---~----~~~~~--------------~~~~---i~~ep~~~------~~~v~~~~kG~~~~~v~v~G~~aHs~~~p-~~ 223 (402)
T PRK07338 175 ---A----ELARG--------------KHAA---LTYEPALP------DGTLAGARKGSGNFTIVVTGRAAHAGRAF-DE 223 (402)
T ss_pred ---H----HHhcc--------------CcEE---EEecCCCC------CCcEEeecceeEEEEEEEEeEcccCCCCc-cc
Confidence 1 11100 1122 55566321 12355679999999999999999965568 89
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 209 RQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 209 g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
|.|||.++++++.+|+++... ....++|+|.|++| .+.|+||++|+ +.+|+|+.+..
T Consensus 224 g~nAi~~~~~~i~~l~~l~~~-------------------~~~~t~~vg~i~gG-~~~nvVP~~a~-~~~d~R~~~~~ 280 (402)
T PRK07338 224 GRNAIVAAAELALALHALNGQ-------------------RDGVTVNVAKIDGG-GPLNVVPDNAV-LRFNIRPPTPE 280 (402)
T ss_pred CccHHHHHHHHHHHHHhhhcc-------------------CCCcEEEEEEEecC-CCCceeccccE-EEEEeccCCHH
Confidence 999999999999999887542 23568999999998 99999999999 99999998754
No 19
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.98 E-value=3.2e-31 Score=252.82 Aligned_cols=223 Identities=17% Similarity=0.212 Sum_probs=168.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEE---------------------cccccEEEEEeCCCCCCCEEEEcccCCCCCCC--
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWV---------------------DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~---------------------d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-- 57 (291)
.|++|.++++||+++|+++|++++. +..+||+++++|..+..+.|+|.||+||||.+
T Consensus 35 ~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~ 114 (427)
T PRK06837 35 TRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPL 114 (427)
T ss_pred CCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEecCCCCCCCeEEEEeecccCCCCCc
Confidence 3678999999999999999998753 23578999998755446899999999999974
Q ss_pred --------------------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc
Q 022852 58 --------------------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (291)
Q Consensus 58 --------------------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (291)
|..|||+|++++|.+++.|++.+. .++++|.|+|+++||.++ .|+..+.
T Consensus 115 ~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~~g-----~g~~~~~---- 183 (427)
T PRK06837 115 DLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGL--APAARVHFQSVIEEESTG-----NGALSTL---- 183 (427)
T ss_pred cccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCC--CCCCcEEEEEEeccccCC-----HhHHHHH----
Confidence 667999999999999999998886 788999999999999742 2443211
Q ss_pred chhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEec
Q 022852 118 VSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS 197 (291)
Q Consensus 118 ~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk 197 (291)
..++.. +. + +..||. ...++.+++|..+++|+++|+
T Consensus 184 -------------------~~~~~~------------d~--~---iv~ep~--------~~~i~~~~~G~~~~~i~v~G~ 219 (427)
T PRK06837 184 -------------------QRGYRA------------DA--C---LIPEPT--------GEKLVRAQVGVIWFRLRVRGA 219 (427)
T ss_pred -------------------hcCcCC------------CE--E---EEcCCC--------CCccccccceeEEEEEEEEee
Confidence 122221 11 1 222332 224667899999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEE
Q 022852 198 QGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLS 277 (291)
Q Consensus 198 ~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~ 277 (291)
++|| +.| +.|.||+..+++++.+|+++...... .......+.....+.+++++.|+|| ...|+||++|+ +.
T Consensus 220 ~~Hs-~~p-~~g~nAi~~~~~~i~~l~~~~~~~~~-----~~~~~~~~~~~~~~~t~ni~~i~gG-~~~nvVP~~~~-~~ 290 (427)
T PRK06837 220 PVHV-REA-GTGANAIDAAYHLIQALRELEAEWNA-----RKASDPHFEDVPHPINFNVGIIKGG-DWASSVPAWCD-LD 290 (427)
T ss_pred cccc-CCc-ccCcCHHHHHHHHHHHHHHHHHHHhh-----cccCCCcccCCCCceeEeeeeEeCC-CCCCccCCEEE-EE
Confidence 9995 689 99999999999999999987542110 0000000101124568999999988 88999999999 99
Q ss_pred eecceeeEEe
Q 022852 278 LDDGYFLLYS 287 (291)
Q Consensus 278 ~D~r~~~~~~ 287 (291)
+|+|++|-++
T Consensus 291 ~~ir~~p~~~ 300 (427)
T PRK06837 291 CRIAIYPGVT 300 (427)
T ss_pred EEEeECCCCC
Confidence 9999988665
No 20
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.98 E-value=2.7e-31 Score=247.76 Aligned_cols=208 Identities=18% Similarity=0.234 Sum_probs=163.5
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcc-------cccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------C
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDH-------LGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------G 58 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~-------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------g 58 (291)
.|++|.++++||+++|+++|++++.+. ..|++++++|.. ..+.|+|.||+||||.+ |
T Consensus 15 ~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G 93 (361)
T TIGR01883 15 ESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLG 93 (361)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCC
Confidence 367899999999999999999987654 568999997753 34899999999999953 2
Q ss_pred C----CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHH
Q 022852 59 I----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (291)
Q Consensus 59 ~----~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~ 134 (291)
. .|||+|++++|.+++.|++.+ .++++|.|+|++|||.+ +.|++.+..
T Consensus 94 ~~~~g~D~k~g~a~~l~~~~~l~~~~---~~~~~v~~~~~~~EE~g-----~~G~~~~~~-------------------- 145 (361)
T TIGR01883 94 GTILGADDKAGVAAMLEAMDVLSTEE---TPHGTIEFIFTVKEELG-----LIGMRLFDE-------------------- 145 (361)
T ss_pred CeEeeccccHHHHHHHHHHHHHHhcC---CCCCCEEEEEEcccccC-----chhHhHhCh--------------------
Confidence 3 799999999999999998865 46789999999999973 347765421
Q ss_pred HHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHH
Q 022852 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (291)
Q Consensus 135 l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~ 214 (291)
.++. ..++ +|++++. ....++.+++|..|++++++|+++|+|+.| +.|+|||.
T Consensus 146 ---~~~~--------------~~~~---~~~~~~~------~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p-~~g~nAi~ 198 (361)
T TIGR01883 146 ---SKIT--------------AAYG---YCLDAPG------EVGNIQLAAPTQVKVDATIAGKDAHAGLVP-EDGISAIS 198 (361)
T ss_pred ---hhcC--------------ccee---EEEeCCC------CcceEEecCCceEEEEEEEEeeecCCCCCc-ccCcCHHH
Confidence 0010 1112 4455421 112366789999999999999999976789 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
++++++.+|+.... ....+++++.|++| .+.|+||++|+ +.+|+|+++..
T Consensus 199 ~~~~~i~~l~~~~~--------------------~~~~~~~i~~i~gG-~~~nvVP~~~~-~~~diR~~~~~ 248 (361)
T TIGR01883 199 VARMAIHAMRLGRI--------------------DEETTANIGSFSGG-VNTNIVQDEQL-IVAEARSLSFR 248 (361)
T ss_pred HHHHHHHhccccCC--------------------CCccccccceeecC-CccCccCCceE-EEEEEecCCHH
Confidence 99999988864211 13467899999999 89999999999 99999998753
No 21
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.97 E-value=9.2e-31 Score=248.47 Aligned_cols=207 Identities=22% Similarity=0.257 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEcc-----cccEEEEEeCCCCCCCEEEEcccCCCCCCC------------------CCCC
Q 022852 5 SVRAGNLIRQWMEDAGLRTWVDH-----LGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------GIFD 61 (291)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d~-----~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------g~~D 61 (291)
+.++++||+++|+++|++++.+. ..|++++++|. +.|+|+|.||+||||.+ |..|
T Consensus 59 ~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~--~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D 136 (410)
T PRK06133 59 LKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGT--GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIAD 136 (410)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCC--CCceEEEEeecCccCCCCccCCCCEEEECCEEECCcccc
Confidence 45899999999999999987643 24799999764 24899999999999863 4569
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCC
Q 022852 62 GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSID 141 (291)
Q Consensus 62 ~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~ 141 (291)
||++++++|.+++.|++.+. +++++|.|+|++|||.+ +.|++.+.. +....
T Consensus 137 ~kgg~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g-----~~G~~~~~~----------------------~~~~~ 187 (410)
T PRK06133 137 DKGGVAVILHALKILQQLGF--KDYGTLTVLFNPDEETG-----SPGSRELIA----------------------ELAAQ 187 (410)
T ss_pred chHHHHHHHHHHHHHHHcCC--CCCCCEEEEEECCcccC-----CccHHHHHH----------------------HHhcc
Confidence 99999999999999998876 67899999999999973 237775421 10000
Q ss_pred hhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHH
Q 022852 142 IAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIV 221 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~ 221 (291)
++.+ +..||+.. ...++++++|..+++++++|+++|||+.| +.|.|||..+++++.
T Consensus 188 ------------~d~~-----i~~ep~~~------~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p-~~g~nAi~~~~~~i~ 243 (410)
T PRK06133 188 ------------HDVV-----FSCEPGRA------KDALTLATSGIATALLEVKGKASHAGAAP-ELGRNALYELAHQLL 243 (410)
T ss_pred ------------CCEE-----EEeCCCCC------CCCEEEeccceEEEEEEEEeeccccCCCc-ccCcCHHHHHHHHHH
Confidence 1111 22344321 12456789999999999999999987899 999999999999999
Q ss_pred HHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 222 LLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.|+++... ....+++++.|++| ++.|+||++|+ +.+|+|+.+..+
T Consensus 244 ~l~~~~~~-------------------~~~~t~~~~~i~gG-~~~nvIP~~~~-~~~diR~~~~~~ 288 (410)
T PRK06133 244 QLRDLGDP-------------------AKGTTLNWTVAKAG-TNRNVIPASAS-AQADVRYLDPAE 288 (410)
T ss_pred HHHhccCC-------------------CCCeEEEeeEEECC-CCCceeCCccE-EEEEEEECCHHH
Confidence 98876432 24578999999999 89999999999 999999988543
No 22
>PRK13004 peptidase; Reviewed
Probab=99.97 E-value=1.2e-30 Score=246.90 Aligned_cols=215 Identities=23% Similarity=0.286 Sum_probs=166.7
Q ss_pred CCHhHHHHHHHHHHHHHHcCCe-EEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~-v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------------- 57 (291)
.|++|.+++++|.++|+++|++ ++.+..+|+++++++. .|+|+|.+|+||||.+
T Consensus 30 ~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGr 106 (399)
T PRK13004 30 ESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGR 106 (399)
T ss_pred CCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeC
Confidence 4788999999999999999997 4557778999998653 2899999999999963
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~ 137 (291)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.++ ..|++.+. .+
T Consensus 107 G~~D~Kg~~aa~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~~~----g~~~~~~~----------------------~~ 158 (399)
T PRK13004 107 GTSDQKGGMASMVYAAKIIKDLGL--DDEYTLYVTGTVQEEDCD----GLCWRYII----------------------EE 158 (399)
T ss_pred CccccchHHHHHHHHHHHHHhcCC--CCCCeEEEEEEcccccCc----chhHHHHH----------------------Hh
Confidence 456999999999999999999886 788999999999999632 12333321 11
Q ss_pred CCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHH
Q 022852 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (291)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa 217 (291)
.++. ++. + +..||. ...++.+++|..+++|+++|+++|| +.| +.|+|||.+++
T Consensus 159 ~~~~------------~d~--~---i~~e~~--------~~~i~~~~~G~~~~~v~v~G~~~Ha-~~p-~~g~nAi~~~~ 211 (399)
T PRK13004 159 DKIK------------PDF--V---VITEPT--------DLNIYRGQRGRMEIRVETKGVSCHG-SAP-ERGDNAIYKMA 211 (399)
T ss_pred cCCC------------CCE--E---EEccCC--------CCceEEecceEEEEEEEEecccccc-CCC-CCCCCHHHHHH
Confidence 1111 111 1 222332 2346778999999999999999995 689 99999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++..|+.+...... .+..+..+++++.|.+|+.+.|+||++|+ +.+|+|+.+-+.
T Consensus 212 ~~i~~l~~~~~~~~~-------------~~~~~~~~~~v~~i~~g~~~~nvvP~~~~-~~~diR~~~~~~ 267 (399)
T PRK13004 212 PILNELEELNPNLKE-------------DPFLGKGTLTVSDIFSTSPSRCAVPDSCA-ISIDRRLTVGET 267 (399)
T ss_pred HHHHHHHhhcccccc-------------CCcCCCceEEEeeeecCCCCCCccCCEEE-EEEEEcCCCCCC
Confidence 999999987543110 01235678999999987568999999999 999999988654
No 23
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.97 E-value=1.5e-30 Score=245.76 Aligned_cols=213 Identities=23% Similarity=0.274 Sum_probs=164.8
Q ss_pred CHhHHHHHHHHHHHHHHcCCe-EEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------C
Q 022852 2 SPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA----------------------G 58 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~-v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~----------------------g 58 (291)
|++|.++++||.++|+++|++ +..+..+|+++++ |. ..+.|+|.+|+||||.+ |
T Consensus 29 s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~-g~--~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG 105 (395)
T TIGR03320 29 SGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYI-GH--GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRG 105 (395)
T ss_pred CCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEe-CC--CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecC
Confidence 678999999999999999997 5666678999998 43 24789999999999863 5
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHC
Q 022852 59 IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALREN 138 (291)
Q Consensus 59 ~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~ 138 (291)
..|||++++++|.|++.|++.+. .++++|.|++++|||.++ ..+++.+ +.+.
T Consensus 106 ~~D~Kg~~aa~l~A~~~l~~~g~--~~~~~i~~~~~~dEE~~~----g~~~~~~----------------------~~~~ 157 (395)
T TIGR03320 106 ASDQEGGIASMVYAGKIIKDLGL--LDDYTLLVTGTVQEEDCD----GLCWQYI----------------------IEED 157 (395)
T ss_pred ccCccchHHHHHHHHHHHHHcCC--CCCceEEEEecccccccC----chHHHHH----------------------HHhc
Confidence 67999999999999999998876 677899999999999732 0122221 1112
Q ss_pred CCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHH
Q 022852 139 SIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAE 218 (291)
Q Consensus 139 g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~ 218 (291)
++.+ +. + +..||+ ...++.+++|..+++|+++|+++|| +.| +.|.|||.++++
T Consensus 158 ~~~~------------d~--~---iv~ep~--------~~~i~~g~~G~~~~~v~~~G~~~Hs-s~p-~~g~nAi~~~~~ 210 (395)
T TIGR03320 158 GIKP------------EF--V---VITEPT--------DMNIYRGQRGRMEIKVTVKGVSCHG-SAP-ERGDNAIYKMAP 210 (395)
T ss_pred CCCC------------CE--E---EEcCCC--------ccceEEecceEEEEEEEEeeecccc-CCC-CCCCCHHHHHHH
Confidence 2211 11 1 223442 2346778999999999999999995 689 999999999999
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 219 LIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 219 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
++..|+++...... ++..+..++++|.|++|+.+.|+||++|+ +.+|+|+.|..
T Consensus 211 ~l~~l~~~~~~~~~-------------~~~~~~~t~~v~~i~~g~~~~NviP~~~~-~~~diR~~p~~ 264 (395)
T TIGR03320 211 ILKELSQLNANLVE-------------DPFLGKGTLTVSEIFFSSPSRCAVADGCT-ISIDRRLTWGE 264 (395)
T ss_pred HHHHHHHHHHhhcC-------------CcccCcCceeeeeeecCCCCcCccCCEEE-EEEEEecCCCC
Confidence 99999987543110 12235679999999988558999999999 99999998754
No 24
>PRK07906 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=248.97 Aligned_cols=236 Identities=20% Similarity=0.193 Sum_probs=166.1
Q ss_pred HhHHHHHHHHHHHHHHcCCeEEEcc----cccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------------
Q 022852 3 PASVRAGNLIRQWMEDAGLRTWVDH----LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~----~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------- 57 (291)
++|.++++||.++|+++|++++.++ .+|++++++|..+..+.|+|.||+||||.+
T Consensus 22 ~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGr 101 (426)
T PRK07906 22 KGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGR 101 (426)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEec
Confidence 6899999999999999999987653 579999998754445789999999999863
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~ 137 (291)
|..|||++++++|+++++|++.+. .++++|.|+|++|||.++ ..|++.+..+. .+
T Consensus 102 G~~D~Kg~~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g~----~~g~~~l~~~~-------------------~~ 156 (426)
T PRK07906 102 GAVDMKDMDAMMLAVVRHLARTGR--RPPRDLVFAFVADEEAGG----TYGAHWLVDNH-------------------PE 156 (426)
T ss_pred CccccchHHHHHHHHHHHHHHcCC--CCCccEEEEEecCcccch----hhhHHHHHHHH-------------------HH
Confidence 567999999999999999999887 788999999999999842 34776553210 00
Q ss_pred CCCChhhHHhhhhcCCCCceeeEEEeeeccCcccc--ccC-cccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHH
Q 022852 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLE--WVG-FPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (291)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~--~~~-~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~ 214 (291)
. + +.... +..|++.... +.. ....++++++|..|++|+++|+++| +|+| + +.|||.
T Consensus 157 ~-~--------------~~~~~---ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~H-ss~p-~-~~nAi~ 215 (426)
T PRK07906 157 L-F--------------EGVTE---AISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGH-GSMV-N-DDNAVT 215 (426)
T ss_pred h-c--------------cchhe---EEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCC-CCCC-C-CCCHHH
Confidence 0 0 00000 1123332100 000 1134678899999999999999999 5788 6 499999
Q ss_pred HHHHHHHHHHHHhcCCC-------------CCcccCCCCCc-----------cccccCCCCceEEEEEEeecCCCccccc
Q 022852 215 AAAELIVLLERLCKHPK-------------DFLSYDGRSNC-----------STLESLSSSLVCTVGEISSWPSASNVIP 270 (291)
Q Consensus 215 ~aa~~i~~l~~~~~~~~-------------~~~~~~~~~~~-----------~~~~~~~~~~~~~vg~i~~G~~~~NvIP 270 (291)
.++++|..|+++..+.. ...+.+..... .........++++++.|+|| .+.|+||
T Consensus 216 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG-~~~NviP 294 (426)
T PRK07906 216 RLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAG-YKVNVIP 294 (426)
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEecc-CccccCC
Confidence 99999999986432110 00000000000 00000001469999999999 8899999
Q ss_pred CceeEEEeecceeeEE
Q 022852 271 GEARNLSLDDGYFLLY 286 (291)
Q Consensus 271 ~~a~~~~~D~r~~~~~ 286 (291)
++|+ +.+|+|+.|.+
T Consensus 295 ~~~~-~~~d~R~~p~~ 309 (426)
T PRK07906 295 GTAE-AVVDGRFLPGR 309 (426)
T ss_pred CceE-EEEEEeECCCC
Confidence 9999 99999998754
No 25
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.97 E-value=2.7e-30 Score=242.46 Aligned_cols=218 Identities=22% Similarity=0.206 Sum_probs=160.1
Q ss_pred CHhHHHHHHHHHHHHHHcCCe-EEEccc-ccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------
Q 022852 2 SPASVRAGNLIRQWMEDAGLR-TWVDHL-GNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~-v~~d~~-gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------------- 57 (291)
|++|.+++++|.++|+++|++ ++++.. .||++++.+. ..++|+|.||+||||.+
T Consensus 12 s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~--~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~ 89 (373)
T TIGR01900 12 SDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFG--KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHA 89 (373)
T ss_pred CchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCC--CCCeEEEeCccccccCCCCChhhhccCcccccccccccc
Confidence 678999999999999999653 322222 3899997532 25789999999999742
Q ss_pred ----------CCCCcHHHHHHHHHHHHHHHH--cCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccC
Q 022852 58 ----------GIFDGSLGIITAISALKVLKS--TGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSD 125 (291)
Q Consensus 58 ----------g~~D~~~gv~a~l~a~~~L~~--~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d 125 (291)
|..|||+|++++|.+++.|++ .+. .++++|.|+|++|||.++ +..|++.+..
T Consensus 90 ~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~--~~~~~i~~~~~~dEE~~~---~~~G~~~~~~----------- 153 (373)
T TIGR01900 90 HPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET--ELKHDLTLIAYDCEEVAA---EKNGLGHIRD----------- 153 (373)
T ss_pred cccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc--CCCCCEEEEEEecccccC---CCCCHHHHHH-----------
Confidence 446999999999999999964 344 578999999999999742 1125554321
Q ss_pred CCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCC
Q 022852 126 KSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVP 205 (291)
Q Consensus 126 ~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P 205 (291)
. ... ...++. + +..||+ ...++++++|..|++|+++|+++|| +.|
T Consensus 154 -----------~-~~~---------~~~~d~--~---iv~Ept--------~~~i~~g~~G~~~~~i~v~G~~~H~-s~p 198 (373)
T TIGR01900 154 -----------A-HPD---------WLAADF--A---IIGEPT--------GGGIEAGCNGNIRFDVTAHGVAAHS-ARA 198 (373)
T ss_pred -----------h-Ccc---------cccCCE--E---EEECCC--------CCcccccceeeEEEEEEEEeecccc-CCC
Confidence 1 000 001111 1 223442 2346678999999999999999995 699
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeE
Q 022852 206 MSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLL 285 (291)
Q Consensus 206 ~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~ 285 (291)
+.|.|||.++++++.+|+++...... .++.....++|++.|+|| .+.|+||++|+ +.+|+|++|.
T Consensus 199 -~~g~NAi~~~~~~i~~l~~l~~~~~~------------~~~~~~~~t~~v~~I~GG-~~~nvVP~~a~-~~~diR~~p~ 263 (373)
T TIGR01900 199 -WLGDNAIHKAADIINKLAAYEAAEVN------------IDGLDYREGLNATFCEGG-KANNVIPDEAR-MHLNFRFAPD 263 (373)
T ss_pred -CCCCCHHHHHHHHHHHHHHhhccccc------------ccCCcccceEEEEEEeCC-CCCcccCCeEE-EEEEEecCCC
Confidence 99999999999999999987543111 001123478999999999 89999999999 9999999986
Q ss_pred Ee
Q 022852 286 YS 287 (291)
Q Consensus 286 ~~ 287 (291)
.+
T Consensus 264 ~~ 265 (373)
T TIGR01900 264 KD 265 (373)
T ss_pred cC
Confidence 54
No 26
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=2.3e-30 Score=246.65 Aligned_cols=226 Identities=17% Similarity=0.181 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEcc------------cccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWVDH------------LGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------- 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~------------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------- 57 (291)
+|+++++||+++|+++|++++... ..|++|+++|.. ..+.|+|.||+||||.+
T Consensus 35 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~-~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~d 113 (427)
T PRK13013 35 AYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGAR-DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKD 113 (427)
T ss_pred cHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCC-CCCEEEEEeccccCCCCCCCcCCCCCceEEC
Confidence 578999999999999999987542 248999997653 34789999999999963
Q ss_pred ------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcH
Q 022852 58 ------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTV 131 (291)
Q Consensus 58 ------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~ 131 (291)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.++ ..|.+.+
T Consensus 114 g~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~g~----~~g~~~l------------------- 168 (427)
T PRK13013 114 GRIYGRGACDMKGGLAASIIAAEAFLAVYP--DFAGSIEISGTADEESGG----FGGVAYL------------------- 168 (427)
T ss_pred CEEEeccccccchHHHHHHHHHHHHHHhCC--CCCccEEEEEEeccccCC----hhHHHHH-------------------
Confidence 567999999999999999998876 778999999999999742 1133322
Q ss_pred HHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCC
Q 022852 132 LDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD 211 (291)
Q Consensus 132 ~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~n 211 (291)
.+.|... +....+. +..||+ .. ..+..+++|..+++|+++|+++| ++.| +.|+|
T Consensus 169 ----~~~~~~~-----------~~~~d~~--i~~ep~------~~-~~i~~~~~G~~~~~i~v~G~~~H-~~~p-~~g~n 222 (427)
T PRK13013 169 ----AEQGRFS-----------PDRVQHV--IIPEPL------NK-DRICLGHRGVWWAEVETRGRIAH-GSMP-FLGDS 222 (427)
T ss_pred ----HhcCCcc-----------ccCCCEE--EEecCC------CC-CceEEeeeeEEEEEEEEEccccc-cCCC-CcCcC
Confidence 2223210 0001111 222442 11 24667899999999999999999 5799 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCc----------ccccCceeEEEeecc
Q 022852 212 PMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSAS----------NVIPGEARNLSLDDG 281 (291)
Q Consensus 212 Ai~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~----------NvIP~~a~~~~~D~r 281 (291)
||..++++|.+|+++..+... . ..............+++|++.|++| ... |+||++|+ +.+|+|
T Consensus 223 ai~~~~~~l~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~t~~v~~i~gG-~~~~~~~~~~~~~n~IPd~a~-~~idiR 296 (427)
T PRK13013 223 AIRHMGAVLAEIEERLFPLLA---T-RRTAMPVVPEGARQSTLNINSIHGG-EPEQDPDYTGLPAPCVADRCR-IVIDRR 296 (427)
T ss_pred HHHHHHHHHHHHHHHhhhhhh---c-ccccCCCCCcccCCCceeeeEEeCC-CccccccccccccccCCceEE-EEEEEE
Confidence 999999999999875422100 0 0000000000124688999999998 666 99999999 999999
Q ss_pred eeeEEe
Q 022852 282 YFLLYS 287 (291)
Q Consensus 282 ~~~~~~ 287 (291)
+.+-.+
T Consensus 297 ~~p~~~ 302 (427)
T PRK13013 297 FLIEED 302 (427)
T ss_pred eCCCCC
Confidence 998654
No 27
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.97 E-value=4.4e-30 Score=240.00 Aligned_cols=220 Identities=23% Similarity=0.274 Sum_probs=159.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEE--cccccEEEEEeCCCCCCCEEEEcccCCCCCCCCC---------------CCcH
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWV--DHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGI---------------FDGS 63 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~--d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~---------------~D~~ 63 (291)
.|++|.++++||+++|+++|++++. ....|+++++++..+ .|.|+|+||+||||.+.. .+.+
T Consensus 14 ~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~ 92 (363)
T TIGR01891 14 LSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKP-GPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHD 92 (363)
T ss_pred CCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCC-CCEEEEEeccCCCCcccccCCCcccCCCCceecCcCH
Confidence 3789999999999999999999875 235689999976433 489999999999985310 1124
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChh
Q 022852 64 LGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIA 143 (291)
Q Consensus 64 ~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~ 143 (291)
++++++|++++.|++.+. .++++|.|+|++|||.+. |++.+.. .+..
T Consensus 93 ~~~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~~~------G~~~~~~-----------------------~~~~-- 139 (363)
T TIGR01891 93 LHTAILLGTAKLLKKLAD--LLEGTVRLIFQPAEEGGG------GATKMIE-----------------------DGVL-- 139 (363)
T ss_pred HHHHHHHHHHHHHHhchh--hCCceEEEEEeecCcCcc------hHHHHHH-----------------------CCCC--
Confidence 567777888888887655 678999999999999732 7775421 1210
Q ss_pred hHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 022852 144 EESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLL 223 (291)
Q Consensus 144 ~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l 223 (291)
+.+...|..|.+++...+.. ......+++|..+++|+++|+++|| +.| +.|+|||.+|++++.+|
T Consensus 140 -----------~~~d~~i~~e~~~~~~~~~~--~~~~~~~~~g~~~~~i~~~G~~~Ha-s~p-~~g~nAi~~~~~~i~~l 204 (363)
T TIGR01891 140 -----------DDVDAILGLHPDPSIPAGTV--GLRPGTIMAAADKFEVTIHGKGAHA-ARP-HLGRDALDAAAQLVVAL 204 (363)
T ss_pred -----------CCcCEEEEECCCCCCCCeEE--EECCCcceeecceEEEEEEeecccc-cCc-ccccCHHHHHHHHHHHH
Confidence 01111111332221111100 1112235789999999999999996 899 99999999999999999
Q ss_pred HHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 224 ERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
+++...... + ....++++|.|++| .+.|+||++|+ +.+|+|+.+-.
T Consensus 205 ~~~~~~~~~--------------~-~~~~~~~i~~i~gG-~~~nvvP~~~~-~~~diR~~~~~ 250 (363)
T TIGR01891 205 QQIVSRNVD--------------P-SRPAVVTVGIIEAG-GAPNVIPDKAS-MSGTVRSLDPE 250 (363)
T ss_pred HHHhhccCC--------------C-CCCcEEEEEEEEcC-CCCcEECCeeE-EEEEEEeCCHH
Confidence 987533111 1 24678999999999 79999999999 99999998743
No 28
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.97 E-value=2.7e-30 Score=242.32 Aligned_cols=220 Identities=23% Similarity=0.256 Sum_probs=167.5
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcc----cc----cEEEEEeCCCCCCCEEEEcccCCCCCCC----------------
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDH----LG----NVHGRVEGLNASAQALLIGSHLDTVVDA---------------- 57 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~----~g----nv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------- 57 (291)
|++|.++++||+++|+++|+++++.. .+ |+++.+.|.. ..|+|+|.+||||||.+
T Consensus 17 ~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~ 95 (375)
T TIGR01910 17 GGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKD 95 (375)
T ss_pred CcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEEC
Confidence 57899999999999999999986532 22 4677766643 35899999999999975
Q ss_pred ------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcH
Q 022852 58 ------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTV 131 (291)
Q Consensus 58 ------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~ 131 (291)
|..|+|++++++|++++.|++.+. .++++|.|+|+++||.+ +.|++.+..
T Consensus 96 g~i~grG~~D~k~~~a~~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~g-----~~G~~~~~~----------------- 151 (375)
T TIGR01910 96 GKLYGRGATDMKGGLVALLYALKAIREAGI--KPNGNIILQSVVDEESG-----EAGTLYLLQ----------------- 151 (375)
T ss_pred CEEEecCccccchHHHHHHHHHHHHHHcCC--CCCccEEEEEEcCcccC-----chhHHHHHH-----------------
Confidence 567999999999999999998876 68899999999999974 247776531
Q ss_pred HHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCC
Q 022852 132 LDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD 211 (291)
Q Consensus 132 ~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~n 211 (291)
.+... +++ .+ +..+|+ + ...++++++|..+++|+++|+++|| +.| +.|.|
T Consensus 152 ------~~~~~----------~~d--~~---i~~~~~------~-~~~v~~~~~G~~~~~i~~~G~~~Hs-~~p-~~g~n 201 (375)
T TIGR01910 152 ------RGYFK----------DAD--GV---LIPEPS------G-GDNIVIGHKGSIWFKLRVKGKQAHA-SFP-QFGVN 201 (375)
T ss_pred ------cCCCC----------CCC--EE---EECCCC------C-CCceEEEecceEEEEEEEeeeeccc-CCC-Ccchh
Confidence 12110 011 11 223432 1 2356678999999999999999995 689 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 212 PMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 212 Ai~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
||.+++++|.+|+++...... +.. . ......++++++.|++| .+.|+||++|+ +.+|+|+.|-.+
T Consensus 202 Ai~~~~~~l~~l~~~~~~~~~------~~~-~--~~~~~~~t~~i~~i~gG-~~~nviP~~~~-~~~diR~~~~~~ 266 (375)
T TIGR01910 202 AIMKLAKLITELNELEEHIYA------RNS-Y--GFIPGPITFNPGVIKGG-DWVNSVPDYCE-FSIDVRIIPEEN 266 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhhh------ccc-c--cccCCCccccceeEECC-CCcCcCCCEEE-EEEEeeeCCCCC
Confidence 999999999999987643211 000 0 00135689999999998 89999999999 999999988543
No 29
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.97 E-value=8.2e-30 Score=240.81 Aligned_cols=214 Identities=24% Similarity=0.273 Sum_probs=164.9
Q ss_pred CCHhHHHHHHHHHHHHHHcCCe-EEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~-v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------------- 57 (291)
.|++|.+++++|.++|+++|++ ++.+..+|+++++ |. +.+.|+|.+|+||||.+
T Consensus 28 ~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~-g~--~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGr 104 (395)
T TIGR03526 28 ESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYI-GH--GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGR 104 (395)
T ss_pred CCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEe-CC--CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEec
Confidence 3678999999999999999997 4667778999988 43 23789999999999963
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~ 137 (291)
|..|||++++++|.+++.|++.+. .+++++.|+++++||+.+ ..|++.+. .+
T Consensus 105 G~~D~Kg~~aa~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~~~----g~~~~~~~----------------------~~ 156 (395)
T TIGR03526 105 GASDQEGGIASMVYAGKIIKDLGL--LDDYTLLVTGTVQEEDCD----GLCWQYII----------------------EE 156 (395)
T ss_pred CccccchhHHHHHHHHHHHHHcCC--CCCceEEEEEecccccCC----cHhHHHHH----------------------hc
Confidence 567999999999999999998876 677899999999999522 11333221 11
Q ss_pred CCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHH
Q 022852 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (291)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa 217 (291)
.++. ++. + +..||+ ...+..+++|..+++|+++|+++|| +.| +.|+|||.+++
T Consensus 157 ~~~~------------~d~--~---i~~ep~--------~~~i~~g~~G~~~~~v~v~G~~~Hs-~~p-~~g~nAi~~~~ 209 (395)
T TIGR03526 157 DKIK------------PEF--V---VITEPT--------DMNIYRGQRGRMEIKVTVKGVSCHG-SAP-ERGDNAIYKMA 209 (395)
T ss_pred cCCC------------CCE--E---EecCCC--------CceEEEEcceEEEEEEEEecCCCcc-CCC-CCCCCHHHHHH
Confidence 1121 111 1 223442 2346678999999999999999995 689 99999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEE
Q 022852 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~ 286 (291)
+++.+|+++...... ++..+..+++++.|++|+.+.|+||++|+ +.+|+|+.+..
T Consensus 210 ~~i~~l~~~~~~~~~-------------~~~~~~~~~~v~~i~~g~~~~nviP~~~~-~~~d~R~~~~~ 264 (395)
T TIGR03526 210 PILKELSQLNANLVE-------------DPFLGKGTLTVSEIFFSSPSRCAVADGCT-ISIDRRLTWGE 264 (395)
T ss_pred HHHHHHHHhhhhhcC-------------CcccCccceeeeeeecCCCCCCccCCeEE-EEEEEecCCCC
Confidence 999999987543110 12234679999999988458999999999 99999998754
No 30
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.97 E-value=4.3e-30 Score=241.50 Aligned_cols=220 Identities=21% Similarity=0.248 Sum_probs=162.6
Q ss_pred CHhH-HHHHHHHHHHHHHcCCeEEEc-----ccccEEEEEeCCCCCCCEEEEcccCCCCCCC------------------
Q 022852 2 SPAS-VRAGNLIRQWMEDAGLRTWVD-----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------ 57 (291)
Q Consensus 2 s~~E-~~~~~~i~~~l~~~G~~v~~d-----~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------ 57 (291)
|++| .++++||+++|+++|+++++. ..+||++++++. ..|.|+|.||+||||.+
T Consensus 20 s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i 97 (385)
T PRK07522 20 SRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRL 97 (385)
T ss_pred CCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCCCCCCCCCCCceEEECCEE
Confidence 4555 599999999999999997652 236899999643 25899999999999853
Q ss_pred ---CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHH
Q 022852 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (291)
Q Consensus 58 ---g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~ 134 (291)
|..|||++++++|.+++.|++. .++++|.|+|++|||.+. .|++.+...
T Consensus 98 ~GrG~~D~Kg~~a~~l~a~~~l~~~----~~~~~i~~~~~~dEE~g~-----~G~~~l~~~------------------- 149 (385)
T PRK07522 98 YGRGTCDMKGFIAAALAAVPELAAA----PLRRPLHLAFSYDEEVGC-----LGVPSMIAR------------------- 149 (385)
T ss_pred EeccccccchHHHHHHHHHHHHHhC----CCCCCEEEEEEeccccCC-----ccHHHHHHH-------------------
Confidence 5679999999999999999876 357899999999999742 377765311
Q ss_pred HHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHH
Q 022852 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (291)
Q Consensus 135 l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~ 214 (291)
+.+.+..+ + .+ +..||. ...++.+++|..+++|+++|+++|+ +.| +.|+||+.
T Consensus 150 ~~~~~~~~------------d--~~---i~~ep~--------~~~~~~~~~G~~~~~i~v~G~~~Hs-~~p-~~g~nAi~ 202 (385)
T PRK07522 150 LPERGVKP------------A--GC---IVGEPT--------SMRPVVGHKGKAAYRCTVRGRAAHS-SLA-PQGVNAIE 202 (385)
T ss_pred hhhcCCCC------------C--EE---EEccCC--------CCeeeeeecceEEEEEEEEeecccc-CCC-ccCcCHHH
Confidence 11111111 1 11 222331 1346778999999999999999995 688 89999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++++|..|+++..+... .......+. .+.++++++.|++| .+.|+||++|+ +.+|+|+.+.++
T Consensus 203 ~~~~~i~~l~~~~~~~~~-----~~~~~~~~~--~~~~t~~i~~i~gG-~~~nviP~~a~-~~~diR~~~~~~ 266 (385)
T PRK07522 203 YAARLIAHLRDLADRLAA-----PGPFDALFD--PPYSTLQTGTIQGG-TALNIVPAECE-FDFEFRNLPGDD 266 (385)
T ss_pred HHHHHHHHHHHHHHHHhh-----cCCCCcCCC--CCcceeEEeeeecC-ccccccCCceE-EEEEEccCCCCC
Confidence 999999999987533110 000000000 12478999999988 89999999999 999999998654
No 31
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.97 E-value=9.8e-30 Score=235.66 Aligned_cols=203 Identities=26% Similarity=0.252 Sum_probs=158.3
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccc---cEEEEEeCCCCCCCEEEEcccCCCCCCC-------------CCCCcHH
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLG---NVHGRVEGLNASAQALLIGSHLDTVVDA-------------GIFDGSL 64 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~g---nv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------g~~D~~~ 64 (291)
.|++|.++++||.++|+++|++++.+..+ |+++ + ..|+|+|.||+||||.. |..|||+
T Consensus 17 ~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~---~---~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg 90 (347)
T PRK08652 17 PSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV---N---SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKG 90 (347)
T ss_pred CCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc---C---CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhH
Confidence 37899999999999999999998775543 4554 2 24799999999999862 7789999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhh
Q 022852 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (291)
Q Consensus 65 gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~ 144 (291)
+++++|.+++.|.+. .++++|.|+|++|||.++ .|++.+.. +.
T Consensus 91 ~~a~~l~a~~~l~~~----~~~~~v~~~~~~dEE~g~-----~G~~~~~~----------------------~~------ 133 (347)
T PRK08652 91 GVAAILLALEELGKE----FEDLNVGIAFVSDEEEGG-----RGSALFAE----------------------RY------ 133 (347)
T ss_pred HHHHHHHHHHHHhhc----ccCCCEEEEEecCcccCC-----hhHHHHHH----------------------hc------
Confidence 999999999999854 346799999999999742 37665421 10
Q ss_pred HHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 022852 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (291)
Q Consensus 145 ~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~ 224 (291)
.++ ++ ++.||+. ..++.+++|..+++|+++|+++| ++.| +.|.|||.++++++..|+
T Consensus 134 --------~~d--~~---i~~ep~~--------~~i~~~~~g~~~~~i~~~G~~~H-~s~p-~~g~nAi~~~a~~i~~l~ 190 (347)
T PRK08652 134 --------RPK--MA---IVLEPTD--------LKVAIAHYGNLEAYVEVKGKPSH-GACP-ESGVNAIEKAFEMLEKLK 190 (347)
T ss_pred --------CCC--EE---EEecCCC--------CceeeecccEEEEEEEEEeeecc-cCCC-CcCcCHHHHHHHHHHHHH
Confidence 011 12 5666631 23567899999999999999999 6799 899999999999999999
Q ss_pred HHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
++...... . . .++++++.|++| .+.|+||++|+ +.+|+|+.+.++
T Consensus 191 ~~~~~~~~--------------~-~-~~~~~~~~i~gg-~~~nviP~~~~-~~~diR~~~~~~ 235 (347)
T PRK08652 191 ELLKALGK--------------Y-F-DPHIGIQEIIGG-SPEYSIPALCR-LRLDARIPPEVE 235 (347)
T ss_pred HHHHhhhc--------------c-c-CCCCcceeeecC-CCCCccCCcEE-EEEEEEcCCCCC
Confidence 87543211 0 1 134677789988 89999999999 999999988654
No 32
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.97 E-value=1.1e-29 Score=235.99 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=155.5
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCC-------------CCCCCcHHHHHH
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD-------------AGIFDGSLGIIT 68 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~-------------~g~~D~~~gv~a 68 (291)
|++|.++++||+++|+++|++++.++.+|++. .| .+.|+|+||+||||. -|..|||+|+++
T Consensus 26 s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~--~g----~~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa 99 (346)
T PRK00466 26 SGNETNATKFFEKISNELNLKLEILPDSNSFI--LG----EGDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLIS 99 (346)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEecCCCcEe--cC----CCeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHH
Confidence 67899999999999999999999888889763 23 267999999999997 378999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhh
Q 022852 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLL 148 (291)
Q Consensus 69 ~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~ 148 (291)
+|.++++|++.+ .+|.|+|++|||.++ .|++.+. +.+..+
T Consensus 100 ~l~a~~~l~~~~------~~i~~~~~~dEE~g~-----~G~~~l~-----------------------~~~~~~------ 139 (346)
T PRK00466 100 MIIAAWLLNEKG------IKVMVSGLADEESTS-----IGAKELV-----------------------SKGFNF------ 139 (346)
T ss_pred HHHHHHHHHHcC------CCEEEEEEcCcccCC-----ccHHHHH-----------------------hcCCCC------
Confidence 999999998764 358999999999742 3766542 112211
Q ss_pred hhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 022852 149 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCK 228 (291)
Q Consensus 149 ~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~ 228 (291)
+. + +..||. + ...++.+++|..|++|+++|+++|| +.| + .|||.++++++.+|+++..
T Consensus 140 ------d~--~---i~~ep~------~-~~~i~~~~kG~~~~~i~v~G~~~Ha-s~p-~--~nAi~~~~~~l~~l~~~~~ 197 (346)
T PRK00466 140 ------KH--I---IVGEPS------N-GTDIVVEYRGSIQLDIMCEGTPEHS-SSA-K--SNLIVDISKKIIEVYKQPE 197 (346)
T ss_pred ------CE--E---EEcCCC------C-CCceEEEeeEEEEEEEEEEeecccc-CCC-C--cCHHHHHHHHHHHHHhccc
Confidence 11 1 223442 1 1347788999999999999999994 678 5 5999999999998875422
Q ss_pred CCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 229 HPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
. ....++++|.|++| .+.|+||++|+ +.+|+|+.|-.+
T Consensus 198 ~-------------------~~~~t~~~~~i~gG-~~~NvvP~~a~-~~~diR~~p~~~ 235 (346)
T PRK00466 198 N-------------------YDKPSIVPTIIRAG-ESYNVTPAKLY-LHFDVRYAINNK 235 (346)
T ss_pred c-------------------CCCCcceeeEEecC-CcCcccCCceE-EEEEEEeCCCCC
Confidence 1 24578999999998 99999999999 999999988543
No 33
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.97 E-value=1.8e-29 Score=235.35 Aligned_cols=214 Identities=21% Similarity=0.224 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEcc------cccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWVDH------LGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------------- 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------------- 57 (291)
+|.++++||+++|+++|++++.++ .+|+++++++. +.+.|+|.||+||||.+
T Consensus 16 ~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~G 93 (364)
T TIGR01892 16 PNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYG 93 (364)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEe
Confidence 347999999999999999987643 46899999653 34789999999999863
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHH
Q 022852 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALR 136 (291)
Q Consensus 58 -g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~ 136 (291)
|..|||++++++|.++++|++. .++++|.|+|++|||.+. .|++.+..
T Consensus 94 rG~~D~Kg~~a~~l~a~~~l~~~----~~~~~v~~~~~~~EE~g~-----~G~~~~~~---------------------- 142 (364)
T TIGR01892 94 RGTCDMKGFLACALAAAPDLAAE----QLKKPLHLALTADEEVGC-----TGAPKMIE---------------------- 142 (364)
T ss_pred cCccccchHHHHHHHHHHHHHhc----CcCCCEEEEEEeccccCC-----cCHHHHHH----------------------
Confidence 5679999999999999999875 467899999999999742 37775431
Q ss_pred HCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 022852 137 ENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAA 216 (291)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~a 216 (291)
.+. +.++ .+ +..||+ . ..++.+++|..+++|+++|+++|| +.| +.|.|||..+
T Consensus 143 -~~~-----------~~~d--~~---i~~ep~------~--~~~~~~~~G~~~~~v~v~G~~~Hs-~~p-~~g~nAi~~~ 195 (364)
T TIGR01892 143 -AGA-----------GRPR--HA---IIGEPT------R--LIPVRAHKGYASAEVTVRGRSGHS-SYP-DSGVNAIFRA 195 (364)
T ss_pred -hcC-----------CCCC--EE---EECCCC------C--ceeEEeeceEEEEEEEEEcccccc-cCC-ccCcCHHHHH
Confidence 111 0011 11 222432 1 234457999999999999999995 689 9999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 217 AELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 217 a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
++++.+|+++...... ....+.+. ...++++++.|++| .+.|+||++|+ +.+|+|++|..+
T Consensus 196 ~~~i~~l~~~~~~~~~------~~~~~~~~--~~~~~~~i~~i~gg-~~~nviP~~~~-~~~diR~~p~~~ 256 (364)
T TIGR01892 196 GRFLQRLVHLADTLLR------EDLDEGFT--PPYTTLNIGVIQGG-KAVNIIPGACE-FVFEWRPIPGMD 256 (364)
T ss_pred HHHHHHHHHHHHHhcc------CCCCccCC--CCCceEEEeeeecC-CCCcccCCeEE-EEEEeecCCCCC
Confidence 9999999987533111 00000000 13579999999998 89999999999 999999988654
No 34
>PRK09133 hypothetical protein; Provisional
Probab=99.97 E-value=2.3e-29 Score=242.90 Aligned_cols=234 Identities=21% Similarity=0.245 Sum_probs=164.5
Q ss_pred HhHHHHHHHHHHHHHHcCCeEE---Ec----ccccEEEEEeCCCCCCCEEEEcccCCCCCCC------------------
Q 022852 3 PASVRAGNLIRQWMEDAGLRTW---VD----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------ 57 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~---~d----~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------ 57 (291)
++|.++++||.++|+++|++++ .. ..+||+++++|.++ .+.|+|.||+||||.+
T Consensus 56 ~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~i 134 (472)
T PRK09133 56 GSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYF 134 (472)
T ss_pred cchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeecccCCCChhcCCCCCCcceEeCCEE
Confidence 5789999999999999999753 22 34789999977543 4789999999999963
Q ss_pred ---CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHH
Q 022852 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (291)
Q Consensus 58 ---g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~ 134 (291)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.+ ++.|++.+..+.
T Consensus 135 yGRGa~D~Kg~~aa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~~----g~~G~~~l~~~~------------------ 190 (472)
T PRK09133 135 YGRGTSDDKADAAIWVATLIRLKREGF--KPKRDIILALTGDEEGT----PMNGVAWLAENH------------------ 190 (472)
T ss_pred EecCcccchHHHHHHHHHHHHHHhcCC--CCCCCEEEEEECccccC----ccchHHHHHHHH------------------
Confidence 567999999999999999998876 78899999999999942 234666543110
Q ss_pred HHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccc-c--ccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCC
Q 022852 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVL-E--WVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQD 211 (291)
Q Consensus 135 l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~-~--~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~n 211 (291)
. ..+ +..++ +. |++... . .......++.++||..+++|+++|+++|| |.| + +.|
T Consensus 191 -~-~~~--------------~~~~~---i~-e~~~~~~~~~gept~~~i~~g~kG~~~~~i~v~G~~~Hs-s~p-~-~~n 247 (472)
T PRK09133 191 -R-DLI--------------DAEFA---LN-EGGGGTLDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHS-SRP-T-KDN 247 (472)
T ss_pred -h-hcc--------------CeEEE---EE-CCCccccCCCCCceEEEeeeecceeEEEEEEEecCCCCC-CCC-C-CCC
Confidence 0 000 01112 44 553210 0 01122345678999999999999999995 689 6 589
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--Cc-c---------------------cCCC--------CCccccccCCCCceEEEEEE
Q 022852 212 PMTAAAELIVLLERLCKHPKD--FL-S---------------------YDGR--------SNCSTLESLSSSLVCTVGEI 259 (291)
Q Consensus 212 Ai~~aa~~i~~l~~~~~~~~~--~~-~---------------------~~~~--------~~~~~~~~~~~~~~~~vg~i 259 (291)
||..++++|..|+++..+... +. . .+.. .....+.+ ...++++++.|
T Consensus 248 Ai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~i 326 (472)
T PRK09133 248 AIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNA-MLRTTCVATML 326 (472)
T ss_pred hHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhh-eeeeeEEeeEE
Confidence 999999999999875321100 00 0 0000 00000000 13679999999
Q ss_pred eecCCCcccccCceeEEEeecceeeEEe
Q 022852 260 SSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 260 ~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
++| .+.|+||++|+ +.+|+|++|..+
T Consensus 327 ~gG-~~~NvVP~~a~-~~lDiR~~p~~~ 352 (472)
T PRK09133 327 EGG-HAENALPQRAT-ANVNCRIFPGDT 352 (472)
T ss_pred ecC-CcCccCCCceE-EEEEEEeCCchh
Confidence 999 89999999999 999999988643
No 35
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.97 E-value=1.7e-29 Score=237.30 Aligned_cols=212 Identities=24% Similarity=0.286 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEcc------cccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------------
Q 022852 5 SVRAGNLIRQWMEDAGLRTWVDH------LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (291)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d~------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------- 57 (291)
|.++++||+++|+++|++++... ..|++|++ |.. .+.|+|.||+||||.+
T Consensus 31 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~Gr 107 (383)
T PRK05111 31 NRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGL 107 (383)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEec
Confidence 47899999999999999886543 35899999 432 3579999999999853
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~ 137 (291)
|..|||++++++|.+++.|++. .++++|.|+|++|||.+. .|++.+..
T Consensus 108 G~~D~Kg~~a~~l~a~~~l~~~----~~~~~i~~~~~~~EE~g~-----~G~~~~~~----------------------- 155 (383)
T PRK05111 108 GTADMKGFFAFILEALRDIDLT----KLKKPLYILATADEETSM-----AGARAFAE----------------------- 155 (383)
T ss_pred ccccccHHHHHHHHHHHHHhhc----CCCCCeEEEEEeccccCc-----ccHHHHHh-----------------------
Confidence 5679999999999999999865 356899999999999742 37665421
Q ss_pred CCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHH
Q 022852 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (291)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa 217 (291)
.+.. .++ ++ +..||+ . ..++.+++|..+++|+++|+++| ++.| +.|.|||..++
T Consensus 156 ~~~~-----------~~d--~~---i~~ep~------~--~~~~~~~~G~~~~~i~v~G~~~H-~~~p-~~g~nai~~~~ 209 (383)
T PRK05111 156 ATAI-----------RPD--CA---IIGEPT------S--LKPVRAHKGHMSEAIRITGQSGH-SSDP-ALGVNAIELMH 209 (383)
T ss_pred cCCC-----------CCC--EE---EEcCCC------C--CceeecccceEEEEEEEEeechh-ccCC-ccCcCHHHHHH
Confidence 1110 011 11 223442 1 23456799999999999999999 5799 99999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++.+|+.+...... +.....+. ...++++++.|+|| .+.|+||++|+ +.+|+|+.|.++
T Consensus 210 ~~i~~l~~~~~~~~~------~~~~~~~~--~~~~t~~i~~i~gg-~~~NvVP~~~~-~~~diR~~p~~~ 269 (383)
T PRK05111 210 DVIGELLQLRDELQE------RYHNPAFT--VPYPTLNLGHIHGG-DAPNRICGCCE-LHFDIRPLPGMT 269 (383)
T ss_pred HHHHHHHHHHHHHhc------cCCCccCC--CCCCceeEeeeecC-CcCcccCCceE-EEEEEecCCCCC
Confidence 999999886532110 00000000 24678999999999 89999999999 999999998654
No 36
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=8.1e-29 Score=230.16 Aligned_cols=214 Identities=19% Similarity=0.176 Sum_probs=159.1
Q ss_pred CCHhHHHHHHHHHHHHHHc-CCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------CCCCcHH
Q 022852 1 MSPASVRAGNLIRQWMEDA-GLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------GIFDGSL 64 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~-G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------g~~D~~~ 64 (291)
.|++|.++++||.++|+++ |+++..+ ..|+++++.+. ..+.|+|.+|+||||.+ |..|||+
T Consensus 22 ~s~~e~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg 98 (352)
T PRK13007 22 VSGDEKALADAVEAALRALPHLEVIRH-GNSVVARTDLG--RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKS 98 (352)
T ss_pred CCchHHHHHHHHHHHHHhCcCceEEec-CCeEEEEccCC--CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccH
Confidence 3788999999999999996 9887654 35799998432 23579999999999963 5569999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhh
Q 022852 65 GIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAE 144 (291)
Q Consensus 65 gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~ 144 (291)
+++++|.+++.|. +++++|.|+|++|||.++. ..|++.+.. +....
T Consensus 99 ~~a~~l~a~~~l~------~~~~~i~~~~~~~EE~~~~---~~G~~~~~~----------------------~~~~~--- 144 (352)
T PRK13007 99 GLAVMLHLAATLA------EPAHDLTLVFYDCEEVEAE---ANGLGRLAR----------------------EHPEW--- 144 (352)
T ss_pred HHHHHHHHHHHhh------ccCCCeEEEEEecccccCC---cccHHHHHH----------------------hcccc---
Confidence 9999999999983 4678999999999997421 125544321 11100
Q ss_pred HHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 022852 145 ESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE 224 (291)
Q Consensus 145 ~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~ 224 (291)
++++ .+ +..||. . ..+..+++|..|++|+++|+++|| +.| +.|+||+.+++++|.+|+
T Consensus 145 -------~~~d--~~---i~~ep~------~--~~i~~~~~G~~~~~i~v~G~~~Hs-~~p-~~g~nAi~~~~~~i~~l~ 202 (352)
T PRK13007 145 -------LAGD--FA---ILLEPT------D--GVIEAGCQGTLRVTVTFHGRRAHS-ARS-WLGENAIHKAAPVLARLA 202 (352)
T ss_pred -------cCCC--EE---EEecCC------C--CceEeeccceEEEEEEEEeccccc-CCC-ccCcCHHHHHHHHHHHHH
Confidence 0111 11 333442 1 235678999999999999999995 689 999999999999999999
Q ss_pred HHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 225 RLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
++..+... ........+++++.|+|| .+.|+||++|+ +.+|+|+.|-++
T Consensus 203 ~~~~~~~~------------~~~~~~~~~~~~~~i~gG-~~~nviP~~a~-~~~diR~~p~~~ 251 (352)
T PRK13007 203 AYEPREVV------------VDGLTYREGLNAVRISGG-VAGNVIPDECV-VNVNYRFAPDRS 251 (352)
T ss_pred Hhcccccc------------cCCCCccceeEeEeEecC-CcCccCCCeEE-EEEEEeeCCCCC
Confidence 87543211 000112458899999988 89999999999 999999998654
No 37
>PRK13381 peptidase T; Provisional
Probab=99.97 E-value=7.4e-29 Score=234.93 Aligned_cols=205 Identities=20% Similarity=0.170 Sum_probs=154.9
Q ss_pred HhHHHHHHHHHHHHHHcCCe-EEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCCC-----------------------
Q 022852 3 PASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDAG----------------------- 58 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~-v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g----------------------- 58 (291)
..|.++++||+++|+++|++ +..+..+||+|+++|+.++.|+|+|+||+||||.++
T Consensus 28 ~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~ 107 (404)
T PRK13381 28 PGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQG 107 (404)
T ss_pred hhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccc
Confidence 35789999999999999994 667888899999987654448999999999998542
Q ss_pred ------------------------C----CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccch
Q 022852 59 ------------------------I----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSA 110 (291)
Q Consensus 59 ------------------------~----~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~ 110 (291)
. .|||+|++++|.+++.|++.+ .++++|.|+|++|||.+ +.|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~---~~~g~i~~~~~~dEE~g-----~~G~~ 179 (404)
T PRK13381 108 IWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE---VEHGDIVVAFVPDEEIG-----LRGAK 179 (404)
T ss_pred eeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEcccccc-----cccHH
Confidence 3 899999999999999998875 46889999999999984 23766
Q ss_pred hhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEE
Q 022852 111 ALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190 (291)
Q Consensus 111 ~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~ 190 (291)
.+. . .++. ++.. ++++.+.+ ..++++++|..|+
T Consensus 180 ~~~----------------------~-~~~~------------~d~~-----~~~~~~~~-------~~i~~~~~G~~~~ 212 (404)
T PRK13381 180 ALD----------------------L-ARFP------------VDFA-----YTIDCCEL-------GEVVYENFNAASA 212 (404)
T ss_pred HHH----------------------H-hcCC------------CCEE-----EEecCCCc-------ceEEEecCcceEE
Confidence 541 0 1111 1111 22222211 2356789999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCccccc
Q 022852 191 KVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIP 270 (291)
Q Consensus 191 ~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP 270 (291)
+|+|+|+++|+++.| +.|+|||.+|++++.+|+++..+... + ....+++++.|+++ |
T Consensus 213 ~v~v~Gk~aHa~~~p-~~g~NAI~~a~~~i~~l~~~~~~~~~--------------~-~~~~~i~v~~i~g~-------p 269 (404)
T PRK13381 213 EITITGVTAHPMSAK-GVLVNPILMANDFISHFPRQETPEHT--------------E-GREGYIWVNDLQGN-------V 269 (404)
T ss_pred EEEEEeEecCCCCCc-ccCcCHHHHHHHHHHhCCccCCCCCC--------------C-CcccEEEEEeEEeC-------c
Confidence 999999999965568 89999999999999999876433110 1 12346778877653 8
Q ss_pred CceeEEEeecceeeEE
Q 022852 271 GEARNLSLDDGYFLLY 286 (291)
Q Consensus 271 ~~a~~~~~D~r~~~~~ 286 (291)
++|+ +.+|+|+++..
T Consensus 270 ~~~~-~~~diR~~~~~ 284 (404)
T PRK13381 270 NKAK-LKLIIRDFDLD 284 (404)
T ss_pred ceEE-EEEEEecCCHH
Confidence 9999 99999988753
No 38
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.96 E-value=1.1e-28 Score=235.10 Aligned_cols=217 Identities=20% Similarity=0.225 Sum_probs=164.2
Q ss_pred HhHHHHHHHHHHHHHHcCCeEEEc----ccccEEEEEeCCCC-CCCEEEEcccCCCCCCC--------------------
Q 022852 3 PASVRAGNLIRQWMEDAGLRTWVD----HLGNVHGRVEGLNA-SAQALLIGSHLDTVVDA-------------------- 57 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d----~~gnv~a~~~g~~~-~~~~l~l~sH~DtV~~~-------------------- 57 (291)
.+|.++++||+++|+++|++++++ ...|++++++|..+ ..++|+|.||+||||.+
T Consensus 33 ~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~ly 112 (421)
T PRK08596 33 RNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLY 112 (421)
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEE
Confidence 478999999999999999998753 34789999977533 23679999999999863
Q ss_pred --CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHH
Q 022852 58 --GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDAL 135 (291)
Q Consensus 58 --g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l 135 (291)
|..|||++++++|.++++|++.+. .++++|.|+|++|||.+. .|++.+.
T Consensus 113 GrG~~D~Kgg~a~~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~g~-----~G~~~~~---------------------- 163 (421)
T PRK08596 113 GRGAADMKGGLAGALFAIQLLHEAGI--ELPGDLIFQSVIGEEVGE-----AGTLQCC---------------------- 163 (421)
T ss_pred eccccccchHHHHHHHHHHHHHHcCC--CCCCcEEEEEEeccccCC-----cCHHHHH----------------------
Confidence 567999999999999999999887 788999999999999742 3766542
Q ss_pred HHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecC----------CCCCCCC
Q 022852 136 RENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQ----------GHAGTVP 205 (291)
Q Consensus 136 ~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~----------aHags~P 205 (291)
+.+..+ + ++ ++.||+. .. +.+++|...++++++|++ +|+ +.|
T Consensus 164 -~~~~~~------------d--~~---i~~ep~~--------~~-~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~-~~p 215 (421)
T PRK08596 164 -ERGYDA------------D--FA---VVVDTSD--------LH-MQGQGGVITGWITVKSPQTFHDGTRRQMIHA-GGG 215 (421)
T ss_pred -hcCCCC------------C--EE---EECCCCC--------Cc-cccccceeeEEEEEEeecccccccccccccc-cCC
Confidence 112211 1 12 5556532 11 356899888888888764 795 589
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeE
Q 022852 206 MSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLL 285 (291)
Q Consensus 206 ~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~ 285 (291)
+.|.|||.+++++|.+|+.+...... ... .... + .+..++|++.|+|| ...|+||++|+ +.+|+|++|-
T Consensus 216 -~~G~nai~~~~~~i~~l~~~~~~~~~-~~~-----~~~~-~-~~~~t~~v~~i~gG-~~~nvvP~~~~-~~~d~R~~p~ 284 (421)
T PRK08596 216 -LFGASAIEKMMKIIQSLQELERHWAV-MKS-----YPGF-P-PGTNTINPAVIEGG-RHAAFIADECR-LWITVHFYPN 284 (421)
T ss_pred -ccCcCHHHHHHHHHHHHHHHHHHHhh-ccc-----CccC-C-CCCcceeeeeeeCC-CCCCccCceEE-EEEEeeeCCC
Confidence 99999999999999999987422100 000 0000 0 24578999999999 99999999999 9999999997
Q ss_pred Ee
Q 022852 286 YS 287 (291)
Q Consensus 286 ~~ 287 (291)
++
T Consensus 285 ~~ 286 (421)
T PRK08596 285 ET 286 (421)
T ss_pred CC
Confidence 65
No 39
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.96 E-value=1.2e-28 Score=232.64 Aligned_cols=223 Identities=21% Similarity=0.191 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHHHcCCe-EEEcc----------cccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------
Q 022852 4 ASVRAGNLIRQWMEDAGLR-TWVDH----------LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------- 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~-v~~d~----------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------- 57 (291)
+|.+++++|+++|+++|++ ++... .+|++++++|..+ .++|+|.||+||||.+
T Consensus 28 ~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~-~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~ 106 (400)
T PRK13983 28 GEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDG-KRTLWIISHMDVVPPGDLSLWETDPFKPVVK 106 (400)
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCC-CCeEEEEeeccccCCCCcccccCCCCcceee
Confidence 5899999999999999998 76421 4789999977543 4699999999999964
Q ss_pred -------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCc
Q 022852 58 -------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVT 130 (291)
Q Consensus 58 -------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~ 130 (291)
|..|||+|++++|.+++.|++.+. +++++|.|+|++|||.++ ..|++.+....
T Consensus 107 ~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~--~~~~~v~~~~~~dEE~g~----~~g~~~~~~~~-------------- 166 (400)
T PRK13983 107 DGKIYGRGSEDNGQGIVSSLLALKALMDLGI--RPKYNLGLAFVSDEETGS----KYGIQYLLKKH-------------- 166 (400)
T ss_pred CCEEEecCccCccchHHHHHHHHHHHHHhCC--CCCCcEEEEEEeccccCC----cccHHHHHhhc--------------
Confidence 467999999999999999998887 789999999999999742 12555542110
Q ss_pred HHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCC
Q 022852 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQ 210 (291)
Q Consensus 131 ~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~ 210 (291)
.+.. .. .... +..+.+. +.+. -++.+++|..+++|+++|+++|| +.| +.|+
T Consensus 167 -------~~~~-----------~~--~d~~--i~~~~~~---~~~~--~i~~~~~G~~~~~v~v~G~~~Hs-~~p-~~g~ 217 (400)
T PRK13983 167 -------PELF-----------KK--DDLI--LVPDAGN---PDGS--FIEIAEKSILWLKFTVKGKQCHA-STP-ENGI 217 (400)
T ss_pred -------cccc-----------CC--CCEE--EEecCCC---CCCc--eeEEeecceEEEEEEEEeEcccc-CCC-CCCC
Confidence 0100 00 0111 1122221 1122 35678999999999999999995 689 9999
Q ss_pred CHHHHHHHHHHHHHH-HhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 211 DPMTAAAELIVLLER-LCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 211 nAi~~aa~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
||+..+++++.+|++ +...... ....+. ....+++++.+.+|+.+.|+||++|+ +.+|+|+.+-.+
T Consensus 218 nAi~~~~~~i~~l~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~g~~~~nvvp~~~~-~~~diR~~p~~~ 284 (400)
T PRK13983 218 NAHRAAADFALELDEALHEKFNA--------KDPLFD--PPYSTFEPTKKEANVDNINTIPGRDV-FYFDCRVLPDYD 284 (400)
T ss_pred CHHHHHHHHHHHHHHHHHhhhcc--------cccccC--CCCcccccceeecCCcCCcccCCeeE-EEEEEEeCCCCC
Confidence 999999999999987 4322110 000010 12356778888887568999999999 999999987654
No 40
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.96 E-value=1.5e-28 Score=237.66 Aligned_cols=213 Identities=20% Similarity=0.211 Sum_probs=157.4
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCC--CCCCEEEEcccCCCCCCCCC--------------------
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLN--ASAQALLIGSHLDTVVDAGI-------------------- 59 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~--~~~~~l~l~sH~DtV~~~g~-------------------- 59 (291)
|++|.++++||+++|+++|+++++++.+|++++++|.. ++.|.|+|.||+||||+++.
T Consensus 20 s~~e~~~~~~l~~~l~~~G~~~~~~~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i 99 (477)
T TIGR01893 20 SKNEKEVSNFIVNWAKKLGLEVKQDEVGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWL 99 (477)
T ss_pred CccHHHHHHHHHHHHHHcCCeEEEeCCCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEE
Confidence 67899999999999999999999999999999997642 23588999999999998642
Q ss_pred --------CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc-chhhhccCCCCCc
Q 022852 60 --------FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP-VSALRVSDKSGVT 130 (291)
Q Consensus 60 --------~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~-~~~~~~~d~~g~~ 130 (291)
.|||+|++++|++++. .+ .++++|.++|++|||++ +.||+.+.+... .+.....|..+.
T Consensus 100 ~GrG~~lg~D~k~gva~~l~~~~~---~~---~~~~~i~~~~~~dEE~g-----~~Gs~~l~~~~~~~~~~~~~d~~~~- 167 (477)
T TIGR01893 100 KARGTTLGADNGIGVAMGLAILED---NN---LKHPPLELLFTVDEETG-----MDGALGLDENWLSGKILINIDSEEE- 167 (477)
T ss_pred EECCccccccccHHHHHHHHHHhc---CC---CCCCCEEEEEEeccccC-----chhhhhcChhhcCCcEEEEecCCCC-
Confidence 2999999988887753 33 35679999999999983 458888754321 111111110000
Q ss_pred HHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEe-cCCCCCCCCCCCC
Q 022852 131 VLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG-SQGHAGTVPMSMR 209 (291)
Q Consensus 131 ~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~G-k~aHags~P~~~g 209 (291)
+. ..++++. -..+.+++|+|+++ .++|..|++|+++| +++|||+.||..+
T Consensus 168 --------~~----~~~g~~~--~~~~~~~~e~~~e~---------------~~kG~~~~~i~~~G~~~~Hsg~~p~~~r 218 (477)
T TIGR01893 168 --------GE----FIVGCAG--GRNVDITFPVKYEK---------------FTKNEEGYQISLKGLKGGHSGADIHKGR 218 (477)
T ss_pred --------Ce----EEEECCC--CeeEEEEEEEEEEe---------------cCCCceEEEEEEeCcCCCcCccccCCCC
Confidence 00 0001000 01244667777764 15899999999999 9999888895444
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecce
Q 022852 210 QDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGY 282 (291)
Q Consensus 210 ~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~ 282 (291)
.|||.+|+++|.+|+++. .++++.+.|| ++.|+||++|+ +.+|+|-
T Consensus 219 ~nAi~~aa~~i~~l~~~~-------------------------~~~v~~~~gg-~~~N~ip~~~~-~~~diR~ 264 (477)
T TIGR01893 219 ANANKLMARVLNELKENL-------------------------NFRLSDIKGG-SKRNAIPREAK-ALIAIDE 264 (477)
T ss_pred cCHHHHHHHHHHhhhhcC-------------------------CeEEEEEeCC-CcccccCCceE-EEEEECh
Confidence 699999999998887531 1468888888 99999999999 9999993
No 41
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=1.7e-28 Score=229.60 Aligned_cols=202 Identities=17% Similarity=0.130 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEcccc----cEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------CC
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWVDHLG----NVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GI 59 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~g----nv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------g~ 59 (291)
+|.++++||+++|+ |+++++++.+ |+++.. | .+.|+|+||+||||.+ |+
T Consensus 28 ~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g----~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa 100 (364)
T PRK08737 28 TTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G----TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGV 100 (364)
T ss_pred CcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C----CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECc
Confidence 57899999999996 9988776543 888863 3 2689999999999963 66
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCC
Q 022852 60 FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENS 139 (291)
Q Consensus 60 ~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g 139 (291)
.|||++++++|.+++. +.++|.|+|++|||.++ ..|++.+. +.+
T Consensus 101 ~DmKg~~aa~l~a~~~---------~~~~v~~~~~~dEE~g~----~~g~~~~~-----------------------~~~ 144 (364)
T PRK08737 101 CDIKGAAAALLAAANA---------GDGDAAFLFSSDEEAND----PRCVAAFL-----------------------ARG 144 (364)
T ss_pred ccchHHHHHHHHHHHc---------cCCCEEEEEEcccccCc----hhhHHHHH-----------------------HhC
Confidence 7999999999988752 24689999999999742 12544331 122
Q ss_pred CChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHH
Q 022852 140 IDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAEL 219 (291)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~ 219 (291)
..+ +. + +..||+ ...++.+++|..|++|+++|+++| +|.|.+.|+|||.+++++
T Consensus 145 ~~~------------~~--~---iv~Ept--------~~~~~~~~kG~~~~~v~v~Gk~aH-as~p~~~G~NAI~~~~~~ 198 (364)
T PRK08737 145 IPY------------EA--V---LVAEPT--------MSEAVLAHRGISSVLMRFAGRAGH-ASGKQDPSASALHQAMRW 198 (364)
T ss_pred CCC------------CE--E---EEcCCC--------CceeEEecceeEEEEEEEEeeccc-cCCCcccCCCHHHHHHHH
Confidence 211 11 1 222442 234678899999999999999999 567735999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 220 IVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 220 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
|.++.+......+ ..+.+ ....++++|.|+|| .+.|+||++|+ +.+|+|++|-.+
T Consensus 199 l~~~~~~~~~~~~----------~~~~~-~~~~t~~vg~i~GG-~~~NvVP~~a~-~~~d~R~~p~~~ 253 (364)
T PRK08737 199 GGQALDHVESLAH----------ARFGG-LTGLRFNIGRVEGG-IKANMIAPAAE-LRFGFRPLPSMD 253 (364)
T ss_pred HHHHHHHHHhhhh----------hccCC-CCCCceEEeeEecC-CCCCcCCCceE-EEEEeeeCCCCC
Confidence 9887654322110 00111 24569999999999 89999999999 999999998653
No 42
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.96 E-value=2.3e-28 Score=227.27 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=157.8
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC-------------CCCCcHHHHHH
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------GIFDGSLGIIT 68 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------g~~D~~~gv~a 68 (291)
|++|.++++||.++|+++|++++.+..+|+++++++ ..|.|+|.||+||||.. |..|||+++++
T Consensus 22 s~~e~~~~~~l~~~l~~~G~~~~~~~~~n~i~~~~~---~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa 98 (348)
T PRK04443 22 SGEEAAAAEFLVEFMESHGREAWVDEAGNARGPAGD---GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAA 98 (348)
T ss_pred CCChHHHHHHHHHHHHHcCCEEEEcCCCcEEEEcCC---CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHH
Confidence 678999999999999999999998888999999843 24899999999999852 67899999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhh
Q 022852 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLL 148 (291)
Q Consensus 69 ~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~ 148 (291)
+|.|++.| +. +++++|.|++++|||.++ .|...+ +.+ +..+
T Consensus 99 ~l~A~~~l---~~--~~~~~i~~~~~~dEE~g~-----~~~~~~----------------------l~~-~~~~------ 139 (348)
T PRK04443 99 FAAAAARL---EA--LVRARVSFVGAVEEEAPS-----SGGARL----------------------VAD-RERP------ 139 (348)
T ss_pred HHHHHHHh---cc--cCCCCEEEEEEcccccCC-----hhHHHH----------------------HHh-ccCC------
Confidence 99999998 33 678999999999999842 132221 111 1111
Q ss_pred hhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Q 022852 149 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCK 228 (291)
Q Consensus 149 ~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~ 228 (291)
+ ++ +..||+ +. ..++.+++|..+++++++|+++|| |.| |.|||..+++++..|+++..
T Consensus 140 ------d--~~---iv~Ept------~~-~~i~~~~kG~~~~~l~~~G~~~Hs-s~~---g~NAi~~~~~~l~~l~~~~~ 197 (348)
T PRK04443 140 ------D--AV---IIGEPS------GW-DGITLGYKGRLLVTYVATSESFHS-AGP---EPNAAEDAIEWWLAVEAWFE 197 (348)
T ss_pred ------C--EE---EEeCCC------Cc-cceeeecccEEEEEEEEEeCCCcc-CCC---CCCHHHHHHHHHHHHHHHHh
Confidence 1 11 333543 11 136678999999999999999995 666 68999999999999988654
Q ss_pred CCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 229 HPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.... .++..++.+++++.|+. ..|+||++|+ +.+|+|+.|-++
T Consensus 198 ~~~~------------~~~~~~~~~~~i~~i~~---~~n~iP~~~~-~~~d~R~~p~~~ 240 (348)
T PRK04443 198 ANDG------------RERVFDQVTPKLVDFDS---SSDGLTVEAE-MTVGLRLPPGLS 240 (348)
T ss_pred cCcc------------ccccccccceeeeEEec---CCCCCCceEE-EEEEEccCCCCC
Confidence 1100 01234567889999883 4699999999 999999998765
No 43
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.96 E-value=7.5e-28 Score=227.70 Aligned_cols=227 Identities=19% Similarity=0.149 Sum_probs=161.4
Q ss_pred hHHHHHHHHHHHHHHcCCeEEE-c---ccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWV-D---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~-d---~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------------- 57 (291)
+|.++++||+++|+++|++++. + ...|++++++|.++..|+|+|.+||||||.+
T Consensus 29 ~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGr 108 (400)
T TIGR01880 29 DYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYAR 108 (400)
T ss_pred cHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEc
Confidence 4789999999999999998753 2 2457999998754434799999999999852
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~ 137 (291)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.++ ..|++.+..
T Consensus 109 G~~D~K~~~aa~l~a~~~l~~~~~--~~~~~v~l~~~~dEE~g~----~~G~~~~~~----------------------- 159 (400)
T TIGR01880 109 GAQDMKCVGVQYLEAVRNLKASGF--KFKRTIHISFVPDEEIGG----HDGMEKFAK----------------------- 159 (400)
T ss_pred ccccccHHHHHHHHHHHHHHHcCC--CCCceEEEEEeCCcccCc----HhHHHHHHH-----------------------
Confidence 445999999999999999999876 788999999999999742 126665421
Q ss_pred CCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHH
Q 022852 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAA 217 (291)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa 217 (291)
.+... ..+.. +.++.+.. ++.+ ...++.+++|..+++|+++|+++|| +.| . +.||+..++
T Consensus 160 ~~~~~----------~~~~~-----~~~d~g~~-~~~~-~~~i~~~~kG~~~~~l~v~G~~~Hs-~~~-~-~~nai~~l~ 219 (400)
T TIGR01880 160 TDEFK----------ALNLG-----FALDEGLA-SPDD-VYRVFYAERVPWWVVVTAPGNPGHG-SKL-M-ENTAMEKLE 219 (400)
T ss_pred hhhcc----------CCceE-----EEEcCCCc-cccc-ccceeEEeeEEEEEEEEEecCCCCC-CCC-C-CCCHHHHHH
Confidence 11000 00111 11222211 1111 1346678999999999999999995 667 4 479999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 218 ELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 218 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++..|+++.......+. . .... .....++++++.|+|| .+.|+||++|+ +.+|+|+++.++
T Consensus 220 ~~i~~l~~~~~~~~~~~~---~--~~~~-~~~~~~t~~v~~i~gG-~~~nvIP~~a~-~~~diR~~p~~~ 281 (400)
T TIGR01880 220 KSVESIRRFRESQFQLLQ---S--NPDL-AIGDVTSVNLTKLKGG-VQSNVIPSEAE-AGFDIRLAPSVD 281 (400)
T ss_pred HHHHHHHHhhHHHHHHHh---c--Cccc-cccccceeecceeccC-CcCCcCCCccE-EEEEEeeCCCCC
Confidence 999988875321000000 0 0000 0123579999999999 89999999999 999999998765
No 44
>PRK06446 hypothetical protein; Provisional
Probab=99.96 E-value=6.9e-28 Score=230.52 Aligned_cols=229 Identities=19% Similarity=0.211 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEcc---cccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------CCC
Q 022852 6 VRAGNLIRQWMEDAGLRTWVDH---LGNVHGRVEGLNASAQALLIGSHLDTVVDA----------------------GIF 60 (291)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~---~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~----------------------g~~ 60 (291)
.++++||+++|+++|++++..+ ..|+++++++. ..++|+|.||+||||.+ |+.
T Consensus 25 ~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~ 102 (436)
T PRK06446 25 EETANYLKDTMEKLGIKANIERTKGHPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGAS 102 (436)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEecc
Confidence 7999999999999999987543 35699998532 35899999999999853 678
Q ss_pred CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCC
Q 022852 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSI 140 (291)
Q Consensus 61 D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~ 140 (291)
|||++++++|.|++.|++.+ .++.+|.|+|++|||.++ .|++.+.. + .. ..+
T Consensus 103 DmKgglaa~l~A~~~l~~~~---~~~~~i~~~~~~dEE~g~-----~g~~~~l~------------------~-~~-~~~ 154 (436)
T PRK06446 103 DNKGTLMARLFAIKHLIDKH---KLNVNVKFLYEGEEEIGS-----PNLEDFIE------------------K-NK-NKL 154 (436)
T ss_pred CCcHHHHHHHHHHHHHHHcC---CCCCCEEEEEEcccccCC-----HhHHHHHH------------------H-HH-HHh
Confidence 99999999999999887654 467899999999999842 25554321 0 00 001
Q ss_pred ChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEe--cCCCCCCCCCCCCCCHHHHHHH
Q 022852 141 DIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG--SQGHAGTVPMSMRQDPMTAAAE 218 (291)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~G--k~aHags~P~~~g~nAi~~aa~ 218 (291)
+++. + + +||+.... .....++.+++|..|++++++| +++|| |.| +.|.|||..+++
T Consensus 155 ------------~~d~--v---i-~E~~~~~~--~~~~~i~~~~kG~~~~~l~v~G~~~~~Hs-s~p-~~g~NAi~~~~~ 212 (436)
T PRK06446 155 ------------KADS--V---I-MEGAGLDP--KGRPQIVLGVKGLLYVELVLRTGTKDLHS-SNA-PIVRNPAWDLVK 212 (436)
T ss_pred ------------CCCE--E---E-ECCCCccC--CCCeEEEEecCeEEEEEEEEEeCCCCCCC-CCC-ccCCCHHHHHHH
Confidence 1111 1 2 35543211 1123577889999999999999 99995 689 899999999999
Q ss_pred HHHHHHHHhcCC--CCC------c--------c-cC------------CCCCc----cccccCCCCceEEEEEEeecC--
Q 022852 219 LIVLLERLCKHP--KDF------L--------S-YD------------GRSNC----STLESLSSSLVCTVGEISSWP-- 263 (291)
Q Consensus 219 ~i~~l~~~~~~~--~~~------~--------~-~~------------~~~~~----~~~~~~~~~~~~~vg~i~~G~-- 263 (291)
++.+|.+..... ..| + + ++ +.... ...++....+++|++.|++|.
T Consensus 213 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~~ 292 (436)
T PRK06446 213 LLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYTG 292 (436)
T ss_pred HHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeeccccC
Confidence 999998642100 000 0 0 00 00000 000011246899999999873
Q ss_pred -CCcccccCceeEEEeecceeeEEe
Q 022852 264 -SASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 264 -~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.+.|+||++|+ +.+|+|++|-.+
T Consensus 293 ~~~~nvvP~~a~-~~~d~R~~p~~~ 316 (436)
T PRK06446 293 KGSKTIVPSRAF-AKLDFRLVPNQD 316 (436)
T ss_pred CCCCcEecCceE-EEEEEEcCCCCC
Confidence 35799999999 999999998664
No 45
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.96 E-value=7.8e-28 Score=228.20 Aligned_cols=224 Identities=32% Similarity=0.401 Sum_probs=161.4
Q ss_pred HhHHHHHHHHHHHHHHcCCeEEEcccc------cEEEEEeCCCCCCCEEEEcccCCCCCCC-------------------
Q 022852 3 PASVRAGNLIRQWMEDAGLRTWVDHLG------NVHGRVEGLNASAQALLIGSHLDTVVDA------------------- 57 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~~g------nv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------- 57 (291)
.+|.+++++|+++|+++|+.++.+..+ |+++++.+..+. |.|+|.||+||||.+
T Consensus 31 ~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~l 109 (409)
T COG0624 31 GEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGG-PTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKL 109 (409)
T ss_pred ccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCC-CeEEEeccccccCCCCcccCccCCCccEEECCEE
Confidence 678999999999999999988776655 899999765432 899999999999986
Q ss_pred ---CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHH
Q 022852 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (291)
Q Consensus 58 ---g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~ 134 (291)
|..|||+++++++.|++.|.+.+. .++++|.+++++|||+++ .|.+.+..
T Consensus 110 yGRG~~D~KG~~~a~l~A~~~l~~~~~--~~~~~v~~~~~~dEE~g~-----~~~~~~~~-------------------- 162 (409)
T COG0624 110 YGRGAADMKGGLAAALYALSALKAAGG--ELPGDVRLLFTADEESGG-----AGGKAYLE-------------------- 162 (409)
T ss_pred EecCccccchHHHHHHHHHHHHHHhCC--CCCeEEEEEEEeccccCC-----cchHHHHH--------------------
Confidence 557999999999999999999766 788999999999999842 23333211
Q ss_pred HHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHH
Q 022852 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMT 214 (291)
Q Consensus 135 l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~ 214 (291)
+.. . +..+.++.++|+|| .++.... ..++.+++|..|++|+++|+++||+..|++.|.|++.
T Consensus 163 --~~~-~------------~~~~~~d~~i~~E~--~~~~~~~-~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~ 224 (409)
T COG0624 163 --EGE-E------------ALGIRPDYEIVGEP--TLESEGG-DIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIH 224 (409)
T ss_pred --hcc-h------------hhccCCCEEEeCCC--CCcccCC-CeEEEcceeEEEEEEEEEeecccccccCCcccccHHH
Confidence 000 0 00112334588888 2222222 3344589999999999999999965443399999555
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCC-CceEEEEEEeecCCC-------cccccCceeEEEeecceeeEE
Q 022852 215 AAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSS-SLVCTVGEISSWPSA-------SNVIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vg~i~~G~~~-------~NvIP~~a~~~~~D~r~~~~~ 286 (291)
.+.+.+.++.....+... +... +.+++++.+.+++.. .|+||++|+ +.+|+|+.|.+
T Consensus 225 ~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~-~~~d~R~~p~~ 289 (409)
T COG0624 225 AAIEALAELIEELGDLAG--------------EGFDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAE-ATVDIRLLPGE 289 (409)
T ss_pred HHHHHHHHHHHHhccccc--------------ccccCCccccccccccCCcccccCCccCceecceEE-EEEEEecCCcC
Confidence 544444444333222110 1123 577788877777332 699999999 99999999977
Q ss_pred e
Q 022852 287 S 287 (291)
Q Consensus 287 ~ 287 (291)
+
T Consensus 290 ~ 290 (409)
T COG0624 290 D 290 (409)
T ss_pred C
Confidence 5
No 46
>PRK05469 peptidase T; Provisional
Probab=99.96 E-value=1.7e-27 Score=225.83 Aligned_cols=204 Identities=21% Similarity=0.211 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHcCCe-EEEcccccEEEEEeCCC-CCCCEEEEcccCCCCCCC------------------------
Q 022852 4 ASVRAGNLIRQWMEDAGLR-TWVDHLGNVHGRVEGLN-ASAQALLIGSHLDTVVDA------------------------ 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~-v~~d~~gnv~a~~~g~~-~~~~~l~l~sH~DtV~~~------------------------ 57 (291)
.|.++++||+++|+++|++ ++.+..+||+++++|.. ++.|+|+|.|||||||..
T Consensus 30 ~~~~~a~~l~~~l~~~G~~~~~~~~~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~ 109 (408)
T PRK05469 30 GQWDLAKLLVEELKELGLQDVTLDENGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGN 109 (408)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEECCCeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCc
Confidence 4899999999999999996 77888899999998752 245899999999999640
Q ss_pred -----------------------CC----CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccch
Q 022852 58 -----------------------GI----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSA 110 (291)
Q Consensus 58 -----------------------g~----~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~ 110 (291)
|. .|||+|++++|.+++.|++.+. .++++|.|+|++|||.+. |++
T Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~--~~~g~v~~~f~~dEE~g~------Ga~ 181 (408)
T PRK05469 110 EVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE--IKHGDIRVAFTPDEEIGR------GAD 181 (408)
T ss_pred eEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC--CCCCCEEEEEecccccCC------CHH
Confidence 33 8999999999999999988765 578999999999999742 776
Q ss_pred hhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEE
Q 022852 111 ALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRL 190 (291)
Q Consensus 111 ~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~ 190 (291)
.+. + . +.. ...+ +|+++.+ .+ .+..+++|..++
T Consensus 182 ~~~-----------------~----~--~~~--------------~~~~---~~~~~~~----~g---~~~~~~~g~~~~ 214 (408)
T PRK05469 182 KFD-----------------V----E--KFG--------------ADFA---YTVDGGP----LG---ELEYENFNAASA 214 (408)
T ss_pred Hhh-----------------h----h--hcC--------------CcEE---EEecCCC----cc---eEEeccCceeEE
Confidence 431 0 0 000 0112 4444322 11 144558899999
Q ss_pred EEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCccccc
Q 022852 191 KVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIP 270 (291)
Q Consensus 191 ~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP 270 (291)
+|+++|+++|+++.| +.|.|||.++++++..|+++..+.. +.....++++|.|++| |
T Consensus 215 ~i~v~Gk~~Ha~~~p-~~g~nAi~~~~~~i~~l~~~~~~~~---------------~~~~~~~i~~g~i~gg-------p 271 (408)
T PRK05469 215 KITIHGVNVHPGTAK-GKMVNALLLAADFHAMLPADETPET---------------TEGYEGFYHLTSIKGT-------V 271 (408)
T ss_pred EEEEeeecCCCCCCc-ccccCHHHHHHHHHHhCCCCCCCCC---------------CCCceEEEEEEEEEEc-------c
Confidence 999999999976678 9999999999999998876532210 0112345777777765 6
Q ss_pred CceeEEEeecceeeEE
Q 022852 271 GEARNLSLDDGYFLLY 286 (291)
Q Consensus 271 ~~a~~~~~D~r~~~~~ 286 (291)
++|+ +.+|+|+++..
T Consensus 272 ~~~~-i~~diR~~~~e 286 (408)
T PRK05469 272 EEAE-LSYIIRDFDRE 286 (408)
T ss_pred ceEE-EEEEEecCCHH
Confidence 9999 99999998753
No 47
>PRK08201 hypothetical protein; Provisional
Probab=99.96 E-value=7.1e-28 Score=231.63 Aligned_cols=236 Identities=16% Similarity=0.144 Sum_probs=158.6
Q ss_pred HhHHHHHHHHHHHHHHcCCe-EEEcc---cccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------------
Q 022852 3 PASVRAGNLIRQWMEDAGLR-TWVDH---LGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------- 57 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~-v~~d~---~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------- 57 (291)
.+|.++++||+++|+++|++ ++++. ..||++++.+. +..|+|+|.||+||||.+
T Consensus 37 ~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~-~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyG 115 (456)
T PRK08201 37 EDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHA-PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYA 115 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCC-CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEE
Confidence 35788999999999999996 55433 35799988653 345899999999999863
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHH
Q 022852 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALR 136 (291)
Q Consensus 58 -g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~ 136 (291)
|..|||++++++|.+++.|++.+. .++++|.|++++|||.++ .|+..+.. + ..
T Consensus 116 RG~~DmKgglaa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g~-----~g~~~~l~------------------~-~~ 169 (456)
T PRK08201 116 RGASDDKGQVFMHLKAVEALLKVEG--TLPVNVKFCIEGEEEIGS-----PNLDSFVE------------------E-EK 169 (456)
T ss_pred EecccCcHHHHHHHHHHHHHHHhcC--CCCCCEEEEEEcccccCC-----ccHHHHHH------------------h-hH
Confidence 567999999999999999987655 678899999999999842 24443311 0 00
Q ss_pred HCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCC--CCCCCCCCCCCCHHH
Q 022852 137 ENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQG--HAGTVPMSMRQDPMT 214 (291)
Q Consensus 137 ~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~a--Hags~P~~~g~nAi~ 214 (291)
..+. ++. + +..|++.. . .....+++++||..|++|+++|+++ ||+ .|...+.|||.
T Consensus 170 -~~~~------------~d~--~---ii~e~~~~-~--~~~~~i~~g~kG~~~~~l~v~G~~~~~Hs~-~~~~~~~nAi~ 227 (456)
T PRK08201 170 -DKLA------------ADV--V---LISDTTLL-G--PGKPAICYGLRGLAALEIDVRGAKGDLHSG-LYGGAVPNALH 227 (456)
T ss_pred -Hhcc------------CCE--E---EEeCCCcC-C--CCCEEEEEecCCeEEEEEEEEeCCCCCccc-cccCcCCCHHH
Confidence 0011 111 1 33354321 0 1112477889999999999999998 964 55145589999
Q ss_pred HHHHHHHHHHHHhcCCCC--Cc---------------c--cCCC--CCccccccC------------CCCceEEEEEEee
Q 022852 215 AAAELIVLLERLCKHPKD--FL---------------S--YDGR--SNCSTLESL------------SSSLVCTVGEISS 261 (291)
Q Consensus 215 ~aa~~i~~l~~~~~~~~~--~~---------------~--~~~~--~~~~~~~~~------------~~~~~~~vg~i~~ 261 (291)
.++++|.+|+++..+... +. . .+.. .+....++. ...+|+|++.|+|
T Consensus 228 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~g 307 (456)
T PRK08201 228 ALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYG 307 (456)
T ss_pred HHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeec
Confidence 999999999764211000 00 0 0000 000000000 1246899999988
Q ss_pred cC---CCcccccCceeEEEeecceeeEEee
Q 022852 262 WP---SASNVIPGEARNLSLDDGYFLLYSI 288 (291)
Q Consensus 262 G~---~~~NvIP~~a~~~~~D~r~~~~~~~ 288 (291)
|. .+.|+||++|+ +.+|+|++|-+++
T Consensus 308 g~~~~~~~NvVP~~a~-~~~diR~~p~~~~ 336 (456)
T PRK08201 308 GFQGEGTKTVIPAEAH-AKITCRLVPDQDP 336 (456)
T ss_pred CCCCCCCceEECcceE-EEEEEEeCCCCCH
Confidence 72 24799999999 9999999997653
No 48
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.96 E-value=4.7e-28 Score=229.95 Aligned_cols=205 Identities=20% Similarity=0.171 Sum_probs=148.2
Q ss_pred CHhHHHHHHHHHHHHHHcCCe-EEEcc-cccEEEEEeCCCC-CCCEEEEcccCCCCCC-------------CC-------
Q 022852 2 SPASVRAGNLIRQWMEDAGLR-TWVDH-LGNVHGRVEGLNA-SAQALLIGSHLDTVVD-------------AG------- 58 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~-v~~d~-~gnv~a~~~g~~~-~~~~l~l~sH~DtV~~-------------~g------- 58 (291)
|++| +++++|+++|+++|++ |++|+ .|||+|+++|..+ +.|.|+|.+|||||+. +|
T Consensus 30 ~~~~-~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~ 108 (410)
T TIGR01882 30 PGQL-TFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLG 108 (410)
T ss_pred HhHH-HHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecC
Confidence 3566 7999999999999997 99998 9999999987543 1389999999999984 11
Q ss_pred -------------------------------CCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcc
Q 022852 59 -------------------------------IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFL 107 (291)
Q Consensus 59 -------------------------------~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~ 107 (291)
+.|||+|+|++|.+++.|++.+. .++++|.|+|++|||.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~--~~~g~I~~~ft~dEE~g~------ 180 (410)
T TIGR01882 109 DLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE--IKHGTIRVAFTPDEEIGR------ 180 (410)
T ss_pred CCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC--CCCCCEEEEEECcccCCc------
Confidence 26999999999999999998643 468899999999999743
Q ss_pred cchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCc
Q 022852 108 GSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQ 187 (291)
Q Consensus 108 Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~ 187 (291)
|++.+. . .+.. ...+ +|+.+. +.+ .+.+...|.
T Consensus 181 Ga~~l~-----------------~------~~~~--------------~~~~---~~i~ge----p~g---~i~~~~~g~ 213 (410)
T TIGR01882 181 GAHKFD-----------------V------KDFN--------------ADFA---YTVDGG----PLG---ELEYETFSA 213 (410)
T ss_pred Ccchhh-----------------h------hhcC--------------ccEE---EEeCCC----CCC---eEEEccccc
Confidence 776431 0 0110 0112 334321 112 133446799
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcc
Q 022852 188 TRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASN 267 (291)
Q Consensus 188 ~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~N 267 (291)
.+++|+|+|+++|++..| +.++|||..+++++..|...... ..++.+++.+++| ..|
T Consensus 214 ~~~~I~v~Gk~aHa~~~~-~~g~nAi~~a~~~~~~l~~~~~~--------------------~~t~~~~g~i~~g--~i~ 270 (410)
T TIGR01882 214 AAAKITIQGNNVHPGTAK-GKMINAAQIAIDLHNLLPEDDRP--------------------EYTEGREGFFHLL--SID 270 (410)
T ss_pred eEEEEEEEEEecCcccCh-HHHHHHHHHHHHHHHhcCCcCCC--------------------ccccceeEEEEEE--eEE
Confidence 999999999999965444 78999999998887655432110 1112223556666 378
Q ss_pred cccCceeEEEeecceeeEE
Q 022852 268 VIPGEARNLSLDDGYFLLY 286 (291)
Q Consensus 268 vIP~~a~~~~~D~r~~~~~ 286 (291)
.||++|+ +.+|+|+++..
T Consensus 271 giPd~a~-l~~diR~~~~e 288 (410)
T TIGR01882 271 GTVEEAK-LHYIIRDFEKE 288 (410)
T ss_pred EecCEEE-EEEEEecCCHH
Confidence 8999999 99999998754
No 49
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.96 E-value=2.1e-27 Score=219.63 Aligned_cols=200 Identities=21% Similarity=0.210 Sum_probs=155.3
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC-------------CCCCcHHHHHH
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA-------------GIFDGSLGIIT 68 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~-------------g~~D~~~gv~a 68 (291)
|++|.++++||+++|+++|+++..+..+|+++.. +. ..|+|+|.||+||||.. |..|||+++++
T Consensus 13 s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~-~~--~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa 89 (336)
T TIGR01902 13 SGKEANAAKFLEEISKDLGLKLIIDDAGNFILGK-GD--GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIA 89 (336)
T ss_pred CcchHHHHHHHHHHHHHcCCEEEECCCCcEEEEe-CC--CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHH
Confidence 6789999999999999999999777788988876 32 35899999999999753 67899999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhh
Q 022852 69 AISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLL 148 (291)
Q Consensus 69 ~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~ 148 (291)
+|.+++.|++. ..+|.|++++|||.+ ..|++.+.. + ..
T Consensus 90 ~l~a~~~l~~~------~~~i~~~~~~dEE~g-----~~G~~~~~~----------------------~-~~-------- 127 (336)
T TIGR01902 90 MIFATWLLNEK------GIKVIVSGLVDEESS-----SKGAREVID----------------------K-NY-------- 127 (336)
T ss_pred HHHHHHHHHhC------CCcEEEEEEeCcccC-----CccHHHHHh----------------------h-cC--------
Confidence 99999999754 358999999999984 247775421 1 00
Q ss_pred hhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHH-Hh
Q 022852 149 QLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLER-LC 227 (291)
Q Consensus 149 ~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~-~~ 227 (291)
++ ++ +..||+. . ..+..+++|..+++++++|+++| +|.| . ||+.++.+++..|.+ +.
T Consensus 128 -----~~--~~---ii~ept~------~-~~i~~~~kG~~~~~v~~~G~~~H-ss~~-~---~ai~~~~~~~~~l~~~~~ 185 (336)
T TIGR01902 128 -----PF--YV---IVGEPSG------A-EGITLGYKGSLQLKIMCEGTPFH-SSSA-G---NAAELLIDYSKKIIEVYK 185 (336)
T ss_pred -----CC--EE---EEecCCC------C-cceeeeeeeEEEEEEEEEecCcc-cCCC-h---hHHHHHHHHHHHHHHHhc
Confidence 11 12 3345531 1 13567899999999999999999 5678 4 599999999999874 32
Q ss_pred cCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 228 KHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.+. . .+.++++++.+++| .+.|+||++|+ +.+|+|+.|-.+
T Consensus 186 ~~~----------------~-~~~~~~~~~~i~gg-~~~nvIP~~a~-~~idiR~~p~~~ 226 (336)
T TIGR01902 186 QPE----------------N-YDKPSIVPTIIRFG-ESYNDTPAKLE-LHFDLRYPPNNK 226 (336)
T ss_pred ccc----------------C-CCCCcceeEEEEcc-CCCcCCCceEE-EEEEEeeCCCCC
Confidence 211 0 13457889999998 89999999999 999999988654
No 50
>PRK09104 hypothetical protein; Validated
Probab=99.95 E-value=2e-27 Score=229.00 Aligned_cols=234 Identities=16% Similarity=0.143 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEc---ccccEEEEEeCCCCCCCEEEEcccCCCCCCC------------------------
Q 022852 5 SVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA------------------------ 57 (291)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d---~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------------ 57 (291)
+.++++||.++|+++|++++.. ...||+++++|.++..+.|+|.||+||||.+
T Consensus 42 ~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~l 121 (464)
T PRK09104 42 CRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVI 121 (464)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceE
Confidence 5789999999999999998642 2357999997654456899999999999852
Q ss_pred ---CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHH
Q 022852 58 ---GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDA 134 (291)
Q Consensus 58 ---g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~ 134 (291)
|..|||++++++|.+++.|++.+. .++++|.|+|++|||.++ .|.+.+.
T Consensus 122 yGRG~~D~Kg~laa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g~-----~g~~~~l--------------------- 173 (464)
T PRK09104 122 VARGASDDKGQLMTFVEACRAWKAVTG--SLPVRVTILFEGEEESGS-----PSLVPFL--------------------- 173 (464)
T ss_pred EEecccCCcHHHHHHHHHHHHHHHhcC--CCCCcEEEEEECccccCC-----ccHHHHH---------------------
Confidence 236999999999999999998765 678899999999999842 2444321
Q ss_pred HHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEe--cCCCCCCCCCCCCCCH
Q 022852 135 LRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG--SQGHAGTVPMSMRQDP 212 (291)
Q Consensus 135 l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~G--k~aHags~P~~~g~nA 212 (291)
.+.+. .+.++. + +..|++.. ......+++++||..|++++++| +++||+..| +.|.||
T Consensus 174 -~~~~~----------~~~~d~--~---iv~E~~~~---~~~~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~-~~g~na 233 (464)
T PRK09104 174 -EANAE----------ELKADV--A---LVCDTGMW---DRETPAITTSLRGLVGEEVTITAADRDLHSGLFG-GAAANP 233 (464)
T ss_pred -HhhHH----------hcCCCE--E---EEeCCCCC---CCCCeEEEeecCCeEEEEEEEEeCCCCccccccC-CccCCH
Confidence 11000 000111 1 22344311 01123466889999999999999 789964346 899999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCccc-C-------------CCC--Ccccc-------cc-----------CCCCceEEEEE
Q 022852 213 MTAAAELIVLLERLCKHPKDFLSY-D-------------GRS--NCSTL-------ES-----------LSSSLVCTVGE 258 (291)
Q Consensus 213 i~~aa~~i~~l~~~~~~~~~~~~~-~-------------~~~--~~~~~-------~~-----------~~~~~~~~vg~ 258 (291)
|..+++++.+|++...+. .+..+ + +.. ....+ .| ....+++|++.
T Consensus 234 i~~~~~~l~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~ 312 (464)
T PRK09104 234 IRVLTRILAGLHDETGRV-TLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEING 312 (464)
T ss_pred HHHHHHHHHhccCCCCCE-eCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEec
Confidence 999999999987632110 00000 0 000 00000 00 01246899999
Q ss_pred EeecC---CCcccccCceeEEEeecceeeEEee
Q 022852 259 ISSWP---SASNVIPGEARNLSLDDGYFLLYSI 288 (291)
Q Consensus 259 i~~G~---~~~NvIP~~a~~~~~D~r~~~~~~~ 288 (291)
|++|. .+.|+||++|+ +.+|+|++|.+++
T Consensus 313 i~gg~~~~~~~nvvP~~~~-~~~diR~~p~~~~ 344 (464)
T PRK09104 313 IWGGYTGEGFKTVIPAEAS-AKVSFRLVGGQDP 344 (464)
T ss_pred cccCCCCCCCccEecCceE-EEEEEEeCCCCCH
Confidence 99882 24799999999 9999999998763
No 51
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=2.6e-27 Score=223.39 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=157.4
Q ss_pred HhHHHHHHHHHHHHHHcCCeEEEcccc------------cEEEEEeCCCCCCCEEEEcccCCCCCCC-------------
Q 022852 3 PASVRAGNLIRQWMEDAGLRTWVDHLG------------NVHGRVEGLNASAQALLIGSHLDTVVDA------------- 57 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~~g------------nv~a~~~g~~~~~~~l~l~sH~DtV~~~------------- 57 (291)
.+|.++++||+++|+++|++++++..+ |+++.. +. +.|.|+|.||+||||.+
T Consensus 26 ~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~ 102 (394)
T PRK08651 26 ENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GS--GNPHLHFNGHYDVVPPGEGWSVNVPFEPKV 102 (394)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CC--CCceEEEEeeeeeecCCCCccccCCCCcEE
Confidence 567899999999999999998765433 346654 32 23899999999999864
Q ss_pred --------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCC
Q 022852 58 --------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGV 129 (291)
Q Consensus 58 --------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~ 129 (291)
|..|||++++++|++++.|++. . +++|.|+|++|||.++ .|++.+..
T Consensus 103 ~~~~~~grG~~D~k~~~~~~l~a~~~l~~~----~-~~~v~~~~~~~EE~g~-----~G~~~~~~--------------- 157 (394)
T PRK08651 103 KDGKVYGRGASDMKGGIAALLAAFERLDPA----G-DGNIELAIVPDEETGG-----TGTGYLVE--------------- 157 (394)
T ss_pred ECCEEEecCccccchHHHHHHHHHHHHHhc----C-CCCEEEEEecCccccc-----hhHHHHHh---------------
Confidence 3468999999999999999865 3 6899999999999742 37776532
Q ss_pred cHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCC
Q 022852 130 TVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMR 209 (291)
Q Consensus 130 ~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g 209 (291)
.+.. +++ .+ +..|+. +. ..++.+++|..+++|+++|+++|+ +.| +.|
T Consensus 158 --------~~~~-----------~~d--~~---i~~~~~------~~-~~i~~~~~G~~~~~i~v~G~~~H~-~~p-~~g 204 (394)
T PRK08651 158 --------EGKV-----------TPD--YV---IVGEPS------GL-DNICIGHRGLVWGVVKVYGKQAHA-STP-WLG 204 (394)
T ss_pred --------ccCC-----------CCC--EE---EEecCC------CC-CceEEecccEEEEEEEEEEecccc-CCC-ccc
Confidence 1110 011 11 222332 11 136678999999999999999995 689 899
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEE--EeecCCCcccccCceeEEEeecceeeEEe
Q 022852 210 QDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGE--ISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 210 ~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~--i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.|||.++++++.+|++...+... .+ ....+.....++++|. |++| .+.|+||++|+ +.+|+|+++..+
T Consensus 205 ~nAi~~~~~~i~~l~~~~~~~~~--~~------~~~~~~~~~~~~~ig~~~i~gG-~~~nviP~~a~-~~~diR~~~~~~ 274 (394)
T PRK08651 205 INAFEAAAKIAERLKSSLSTIKS--KY------EYDDERGAKPTVTLGGPTVEGG-TKTNIVPGYCA-FSIDRRLIPEET 274 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhc--cc------cccccccCCCceeecceeeeCC-CCCCccCCEEE-EEEEeeeCCCCC
Confidence 99999999999999875432110 00 0000113466889999 9988 89999999999 999999988654
No 52
>PRK07907 hypothetical protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=226.35 Aligned_cols=231 Identities=22% Similarity=0.169 Sum_probs=158.6
Q ss_pred hHHHHHHHHHHHHHHcCC-eEEE---cccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------
Q 022852 4 ASVRAGNLIRQWMEDAGL-RTWV---DHLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------- 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~-~v~~---d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------------- 57 (291)
+|.++++||.++|+++|+ +++. +..+|+++++++.. ..++|+|.||+||||.+
T Consensus 42 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGr 120 (449)
T PRK07907 42 EVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGR 120 (449)
T ss_pred hHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEEC
Confidence 478999999999999998 7765 35678999997642 35899999999999973
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRE 137 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~ 137 (291)
|..|||++++++|.++++| +. +++++|.|++++|||.++ .|++.+.. +
T Consensus 121 G~~D~Kg~~aa~l~a~~~l---~~--~~~~~i~~~~~~dEE~g~-----~g~~~~l~----------------------~ 168 (449)
T PRK07907 121 GAADDKGGIAMHLAALRAL---GG--DLPVGVTVFVEGEEEMGS-----PSLERLLA----------------------E 168 (449)
T ss_pred CccCCcHHHHHHHHHHHHh---cc--CCCCcEEEEEEcCcccCC-----ccHHHHHH----------------------h
Confidence 6789999999999999998 23 567899999999999842 26554421 1
Q ss_pred CCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEE--ecCCCCCCCCCCCCCCHHHH
Q 022852 138 NSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVR--GSQGHAGTVPMSMRQDPMTA 215 (291)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~--Gk~aHags~P~~~g~nAi~~ 215 (291)
.+. .++++. + +..||+... .....+.+++||..|++++++ |+++|| +.|...+.|||..
T Consensus 169 ~~~----------~~~~d~--~---iv~E~~~~~---~~~p~i~~~~kG~~~~~l~v~~~G~~~Hs-s~~~~~~~nAi~~ 229 (449)
T PRK07907 169 HPD----------LLAADV--I---VIADSGNWS---VGVPALTTSLRGNADVVVTVRTLEHAVHS-GQFGGAAPDALTA 229 (449)
T ss_pred chH----------hhcCCE--E---EEecCCcCC---CCCeEEEEecCCcEEEEEEEEECCCCCCC-ccccccCCCHHHH
Confidence 100 001111 1 333543210 001236678999999999999 899996 4542678999999
Q ss_pred HHHHHHHHHHHhcCCC--CCcccCCC--CCc--ccc-------------------ccCCCCceEEEEEEeec--CCCccc
Q 022852 216 AAELIVLLERLCKHPK--DFLSYDGR--SNC--STL-------------------ESLSSSLVCTVGEISSW--PSASNV 268 (291)
Q Consensus 216 aa~~i~~l~~~~~~~~--~~~~~~~~--~~~--~~~-------------------~~~~~~~~~~vg~i~~G--~~~~Nv 268 (291)
+++++.+|++...+.. .+...... .+. +.+ ......+++|++.|++| +.+.|+
T Consensus 230 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nv 309 (449)
T PRK07907 230 LVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNA 309 (449)
T ss_pred HHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCE
Confidence 9999999986432100 00000000 000 000 00013678999999973 268899
Q ss_pred ccCceeEEEeecceeeEEe
Q 022852 269 IPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 269 IP~~a~~~~~D~r~~~~~~ 287 (291)
||++|+ +.+|+|++|.++
T Consensus 310 IP~~a~-~~~diR~~p~~~ 327 (449)
T PRK07907 310 LPPSAR-ARLSLRVAPGQD 327 (449)
T ss_pred ecCceE-EEEEEEcCCCCC
Confidence 999999 999999998765
No 53
>PRK08262 hypothetical protein; Provisional
Probab=99.95 E-value=5e-27 Score=227.47 Aligned_cols=237 Identities=19% Similarity=0.169 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHcCCeEEEccc--ccEEEEEeCCCCCCCEEEEcccCCCCCCC------------------------CCC
Q 022852 7 RAGNLIRQWMEDAGLRTWVDHL--GNVHGRVEGLNASAQALLIGSHLDTVVDA------------------------GIF 60 (291)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d~~--gnv~a~~~g~~~~~~~l~l~sH~DtV~~~------------------------g~~ 60 (291)
++++||+++|++.|++++.... .|+++.++|..++.++|+|.||+||||.+ |..
T Consensus 74 ~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~ 153 (486)
T PRK08262 74 ALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGAL 153 (486)
T ss_pred HHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCcc
Confidence 5888999999999997654333 37888887765434789999999999863 557
Q ss_pred CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCC
Q 022852 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSI 140 (291)
Q Consensus 61 D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~ 140 (291)
|||++++++|.|++.|++.+. .++++|.|+|++|||.++ .|++.+. +.+...+.
T Consensus 154 D~Kg~~aa~L~A~~~l~~~~~--~l~~~I~llf~~dEE~g~-----~G~~~l~-------------------~~l~~~~~ 207 (486)
T PRK08262 154 DDKGSLVAILEAAEALLAQGF--QPRRTIYLAFGHDEEVGG-----LGARAIA-------------------ELLKERGV 207 (486)
T ss_pred ccchhHHHHHHHHHHHHHcCC--CCCCeEEEEEecccccCC-----cCHHHHH-------------------HHHHHhcC
Confidence 999999999999999998876 788999999999999742 2776543 12222222
Q ss_pred ChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHH
Q 022852 141 DIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI 220 (291)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i 220 (291)
.++.. .+.. .++..+.-++. .++ ...+.++++|..+++|+++|+++| ++.| +. .|||..++++|
T Consensus 208 ~~~~~------~~~~---~~i~~~~~~~~-~~p---~~~i~~~~kG~~~~~i~v~G~~~H-ss~p-~~-~nai~~l~~~l 271 (486)
T PRK08262 208 RLAFV------LDEG---GAITEGVLPGV-KKP---VALIGVAEKGYATLELTARATGGH-SSMP-PR-QTAIGRLARAL 271 (486)
T ss_pred CEEEE------EeCC---ceecccccCCC-Cce---EEeeEEeeeeeEEEEEEEecCCCC-CCCC-CC-CCHHHHHHHHH
Confidence 21100 0000 00001100000 001 123446799999999999999999 5789 77 99999999999
Q ss_pred HHHHHHhcCCCC------C-------cccCC-----C----C-------CccccccCCCCceEEEEEEeecCCCcccccC
Q 022852 221 VLLERLCKHPKD------F-------LSYDG-----R----S-------NCSTLESLSSSLVCTVGEISSWPSASNVIPG 271 (291)
Q Consensus 221 ~~l~~~~~~~~~------~-------~~~~~-----~----~-------~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~ 271 (291)
.+|++...+..- + ..++. . . ..+........+|++++.|+|| .+.|+||+
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG-~~~NvIP~ 350 (486)
T PRK08262 272 TRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGS-PKDNVLPQ 350 (486)
T ss_pred HHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecC-CccccCCC
Confidence 999874211000 0 00000 0 0 0000000124679999999999 88999999
Q ss_pred ceeEEEeecceeeEEe
Q 022852 272 EARNLSLDDGYFLLYS 287 (291)
Q Consensus 272 ~a~~~~~D~r~~~~~~ 287 (291)
+|+ +.+|+|+.|.++
T Consensus 351 ~a~-~~~diR~~p~~~ 365 (486)
T PRK08262 351 RAT-ATVNFRILPGDS 365 (486)
T ss_pred ccE-EEEEEEeCCCCC
Confidence 999 999999998664
No 54
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.94 E-value=2.8e-26 Score=221.44 Aligned_cols=203 Identities=20% Similarity=0.277 Sum_probs=149.1
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCC--CCCCEEEEcccCCCCCCC----------------------
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLN--ASAQALLIGSHLDTVVDA---------------------- 57 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~--~~~~~l~l~sH~DtV~~~---------------------- 57 (291)
|++|.++++||.++|+++|+++++|+.+|+++++++.. .+.|.|+|.||+||||++
T Consensus 26 S~~e~~~~~~l~~~~~~~G~~~~~d~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l 105 (485)
T PRK15026 26 SYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWV 105 (485)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEE
Confidence 67899999999999999999999999999999876431 235889999999999864
Q ss_pred ---CC---CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcH
Q 022852 58 ---GI---FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTV 131 (291)
Q Consensus 58 ---g~---~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~ 131 (291)
|. .|||+|++++|.++ ++.+. .+++|.++|++|||.+ +.|++.+...
T Consensus 106 ~g~Gt~lgaD~k~gva~~l~~l---~~~~~---~~~~i~~l~t~dEE~G-----~~ga~~l~~~---------------- 158 (485)
T PRK15026 106 KARGTTLGADNGIGMASALAVL---ADENV---VHGPLEVLLTMTEEAG-----MDGAFGLQSN---------------- 158 (485)
T ss_pred EeCCccccCccHHHHHHHHHHH---HhCCC---CCCCEEEEEEcccccC-----cHhHHHhhhc----------------
Confidence 22 49999999887665 45554 4789999999999983 4577754210
Q ss_pred HHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCcc----ccccC---cccceEEcc----cCcEEEEEEEEe-cCC
Q 022852 132 LDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPV----LEWVG---FPLGVVQGI----AGQTRLKVTVRG-SQG 199 (291)
Q Consensus 132 ~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~----~~~~~---~~~gi~~~~----~G~~~~~i~v~G-k~a 199 (291)
...+ + ++ +..||... .+..+ ......+.. +|..+|+|+++| +++
T Consensus 159 -------~~~~------------~--~~---i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~gg 214 (485)
T PRK15026 159 -------WLQA------------D--IL---INTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGG 214 (485)
T ss_pred -------cCCc------------C--EE---EEeCCCCCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCc
Confidence 0000 0 01 33333210 00000 000001112 688899999999 999
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEe
Q 022852 200 HAGTVPMSMRQ-DPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSL 278 (291)
Q Consensus 200 Hags~P~~~g~-nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~ 278 (291)
|||..| +.|+ |||..++++|.++. . ..+++++.|+|| ++.|+||++|+ +.+
T Consensus 215 HsG~~i-~~g~~nAi~~la~~l~~~~----~---------------------~~~~~v~~i~GG-~~~NaIp~~a~-a~i 266 (485)
T PRK15026 215 HSGGEI-HVGLGNANKLLVRFLAGHA----E---------------------ELDLRLIDFNGG-TLRNAIPREAF-ATI 266 (485)
T ss_pred CChHHH-CCCCccHHHHHHHHHHHhH----h---------------------hCCeEEEEEeCC-CccCCCCCCcE-EEE
Confidence 999899 9999 99999999998743 1 246789999999 99999999999 999
Q ss_pred eccee
Q 022852 279 DDGYF 283 (291)
Q Consensus 279 D~r~~ 283 (291)
|+|..
T Consensus 267 ~~~~~ 271 (485)
T PRK15026 267 AVAAD 271 (485)
T ss_pred EEChh
Confidence 99964
No 55
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.94 E-value=2.2e-25 Score=214.89 Aligned_cols=247 Identities=22% Similarity=0.194 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------CCCCcH
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GIFDGS 63 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------g~~D~~ 63 (291)
+|.++++||+++|+++|++++.. .|+++++.... ..++|+|.||+||||.+ |..|||
T Consensus 44 ~~~~~~~~l~~~~~~~G~~~~~~--~n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmK 120 (466)
T PRK07318 44 GPVKALEKFLEIAERDGFKTKNV--DNYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDK 120 (466)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEe--cCccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCc
Confidence 47789999999999999998643 47776654222 34789999999999864 567999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChh
Q 022852 64 LGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIA 143 (291)
Q Consensus 64 ~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~ 143 (291)
+|+++++.+++.|++.+. .++++|.|+|++|||.+ +.|++.+..+..... .++.+|
T Consensus 121 gg~aa~l~Al~~l~~~g~--~~~~~i~l~~~~DEE~g-----~~G~~~l~~~~~~~~-----------------~~~~~d 176 (466)
T PRK07318 121 GPTMAAYYALKIIKELGL--PLSKKVRFIVGTDEESG-----WKCMDYYFEHEEAPD-----------------FGFSPD 176 (466)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCccEEEEEEcccccC-----chhHHHHHHhCCCCC-----------------EEEEeC
Confidence 999999999999999887 77899999999999984 348887654321000 000000
Q ss_pred hH---Hhhhhc---CC------CCceeeEEEeeeccCccccccCcc-cc------------------eEEcccCcE----
Q 022852 144 EE---SLLQLK---YD------PASVWGYIEVHIEQGPVLEWVGFP-LG------------------VVQGIAGQT---- 188 (291)
Q Consensus 144 ~~---~~~~~~---~~------~~~i~a~~elh~e~g~~~~~~~~~-~g------------------i~~~~~G~~---- 188 (291)
.. .++|+. +. .......+ ...+++......... .. +..++||..
T Consensus 177 ~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~ 255 (466)
T PRK07318 177 AEFPIINGEKGITTFDLVHFEGENEGDYVL-VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEG 255 (466)
T ss_pred CCCcEEEEEeeeEEEEEEeccccCCCCcee-EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecC
Confidence 00 000000 00 00000000 011122110000000 00 112467754
Q ss_pred -EEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHH------HhcCCCCCcc--cCCC-CCccccccCCCCceEEEEE
Q 022852 189 -RLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLER------LCKHPKDFLS--YDGR-SNCSTLESLSSSLVCTVGE 258 (291)
Q Consensus 189 -~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~------~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~vg~ 258 (291)
|++|+++|+++| +|+| +.|+|||..|+++|.+|+. +.....+.++ ++.. ......++..+..++|+|.
T Consensus 256 ~~~~i~v~G~aaH-~s~p-~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~ 333 (466)
T PRK07318 256 GKLVLTVIGKSAH-GSTP-EKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGV 333 (466)
T ss_pred CEEEEEEEeeEcc-cCCC-ccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeE
Confidence 899999999999 6899 9999999999999999874 1000000000 0000 0000011223567999999
Q ss_pred EeecCCCcccccCceeEEEeecceeeEEe
Q 022852 259 ISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 259 i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
|++|+ +. +|+ +.+|+|+.+.++
T Consensus 334 i~gg~-~~-----~~~-~~iDiR~~p~~~ 355 (466)
T PRK07318 334 FSFDE-EK-----GGT-LGLNFRYPVGTD 355 (466)
T ss_pred EEEec-Cc-----EEE-EEEEEeCCCCCC
Confidence 99993 22 799 999999998654
No 56
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.93 E-value=3.6e-25 Score=202.51 Aligned_cols=222 Identities=22% Similarity=0.196 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCeEEEc----ccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------------CCC
Q 022852 7 RAGNLIRQWMEDAGLRTWVD----HLGNVHGRVEGLNASAQALLIGSHLDTVVDA----------------------GIF 60 (291)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d----~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~----------------------g~~ 60 (291)
.+++++.++.+.+|+.++.- ...+++.+|.|++++.++|+|+||+||||.- |+.
T Consensus 49 a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaq 128 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQ 128 (420)
T ss_pred HHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEecccc
Confidence 67899999999999876431 1345889999999999999999999999963 778
Q ss_pred CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCC
Q 022852 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSI 140 (291)
Q Consensus 61 D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~ 140 (291)
|||+-+++.|+|++.|+..+. +++++|.+.|.+|||.++ ..|.+.++... + .+.
T Consensus 129 D~K~~~va~leAir~L~~~g~--kp~Rti~lsfvpDEEi~G----~~Gm~~fa~~~-----------------~---~~~ 182 (420)
T KOG2275|consen 129 DMKCVGVAYLEAIRNLKASGF--KPKRTIHLSFVPDEEIGG----HIGMKEFAKTE-----------------E---FKK 182 (420)
T ss_pred chHhHHHHHHHHHHHHHhcCC--CcCceEEEEecCchhccC----cchHHHHhhhh-----------------h---hcc
Confidence 999999999999999999998 899999999999999863 34666554210 0 010
Q ss_pred ChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHH
Q 022852 141 DIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELI 220 (291)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i 220 (291)
..+.. +--|++.. + ...--+.+++||.+|++|+++|+++| ||.||. ..|+.++.+++
T Consensus 183 --------------l~~~f---ilDEG~~s-e--~d~~~vfyaEkg~w~~~v~~~G~~GH-ss~~~~--nTa~~~l~klv 239 (420)
T KOG2275|consen 183 --------------LNLGF---ILDEGGAT-E--NDFATVFYAEKGPWWLKVTANGTPGH-SSYPPP--NTAIEKLEKLV 239 (420)
T ss_pred --------------cceeE---EecCCCCC-c--ccceeEEEEeeceeEEEEEecCCCCC-CCCCCC--ccHHHHHHHHH
Confidence 00111 11133221 1 11122457899999999999999999 688733 67999999999
Q ss_pred HHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeE
Q 022852 221 VLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLL 285 (291)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~ 285 (291)
..+++......++++-.+ .......+|++++.|+|| .+.|++|...+ +.+|+|.-+.
T Consensus 240 ~~~~~fr~~q~~~l~~~p------~~~~~~vtT~Nv~~i~GG-v~~N~~P~~~e-a~~dirv~~~ 296 (420)
T KOG2275|consen 240 ESLEEFREKQVDLLASGP------KLALGDVTTINVGIINGG-VQSNVLPETFE-AAFDIRVRPH 296 (420)
T ss_pred HHHHHhHHHHHHHhhcCC------ceeccceeEEeeeeeecc-cccCcCchhhe-eeeeeEeccC
Confidence 999987744433332221 112367899999999999 99999999999 9999998664
No 57
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.93 E-value=5.6e-25 Score=212.03 Aligned_cols=245 Identities=20% Similarity=0.122 Sum_probs=151.3
Q ss_pred HhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------CCCCc
Q 022852 3 PASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GIFDG 62 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------g~~D~ 62 (291)
..+.++++++.++|+++||+++.. .|+++.+.+. ++.++|+|.||+||||.+ |..||
T Consensus 42 ~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~-~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~ 118 (466)
T TIGR01886 42 PGPVDALTKFLSFAERDGFTTKNF--DNYAGHVEYG-AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDD 118 (466)
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEe--cCCceeEEec-CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCcccc
Confidence 457889999999999999998742 2444444332 235799999999999874 56799
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc-chhhhccCCCCCcHHHHHHHCCCC
Q 022852 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP-VSALRVSDKSGVTVLDALRENSID 141 (291)
Q Consensus 63 ~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~-~~~~~~~d~~g~~~~e~l~~~g~~ 141 (291)
|++++++|.|+++|++.+. +++++|.|++++|||.+ +.|++.+..+.. ++..-..|.+..
T Consensus 119 Kg~~~a~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g-----~~g~~~~~~~~~~~d~~~~~d~~~~------------ 179 (466)
T TIGR01886 119 KGPSLAAYYAMKILKELGL--PPSKKIRFVVGTNEETG-----WVDMDYYFKHEETPDFGFSPDAEFP------------ 179 (466)
T ss_pred chHHHHHHHHHHHHHHhCC--CCCCCEEEEEECccccC-----cccHHHHHhcCcCCCEEEECCCCce------------
Confidence 9999999999999999987 78999999999999984 247776543211 000000000000
Q ss_pred hhhHHhhhhcCCCCceeeEEEeeec-------------cCccccccCc--c--------------cceEEcccCcE----
Q 022852 142 IAEESLLQLKYDPASVWGYIEVHIE-------------QGPVLEWVGF--P--------------LGVVQGIAGQT---- 188 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~i~a~~elh~e-------------~g~~~~~~~~--~--------------~gi~~~~~G~~---- 188 (291)
..+++ +.. ..+++... .|........ . ...+.+++|..
T Consensus 180 ---~~~ge----~g~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~ 250 (466)
T TIGR01886 180 ---IINGE----KGN--FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSF 250 (466)
T ss_pred ---eEEEe----cce--EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEE
Confidence 00000 000 01111100 0000000000 0 00112366654
Q ss_pred -----EEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHH----------HHHhcCCCCCcccCCCCCccccccCCCCce
Q 022852 189 -----RLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLL----------ERLCKHPKDFLSYDGRSNCSTLESLSSSLV 253 (291)
Q Consensus 189 -----~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
|++|+++|+++| +|+| +.|+|||..|++++..+ +.+...... -.+.........++..+.+|
T Consensus 251 ~~~~~~~~i~v~G~~aH-~s~P-~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~g~~S 327 (466)
T TIGR01886 251 EINDESATIVLIGKGAH-GAAP-QVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHE-DFYGEKLGIAFHDELMGDLA 327 (466)
T ss_pred EEeCCEEEEEEEeeEcc-cCCC-CCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCC-CCCcccCCCcccccCcCceE
Confidence 899999999999 6899 99999999999988772 222111000 00000000011123457889
Q ss_pred EEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 254 CTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 254 ~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+|+|.|++| .. | ++|+ +.+|+|++|-++
T Consensus 328 ~nvgvI~gG-~~-~---~~~~-l~iD~R~~Pge~ 355 (466)
T TIGR01886 328 MNAGMFDFD-HA-N---KESK-LLLNFRYPQGTS 355 (466)
T ss_pred EEeEEEEEe-cC-C---ceEE-EEEEEecCCCCC
Confidence 999999999 44 4 8999 999999998765
No 58
>PRK07205 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=208.93 Aligned_cols=237 Identities=16% Similarity=0.121 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEccccc-EEEEEeCCCCCCCEEEEcccCCCCCCC----------------------CCCCc
Q 022852 6 VRAGNLIRQWMEDAGLRTWVDHLGN-VHGRVEGLNASAQALLIGSHLDTVVDA----------------------GIFDG 62 (291)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~~gn-v~a~~~g~~~~~~~l~l~sH~DtV~~~----------------------g~~D~ 62 (291)
.++.+++.++|+++|++++++..++ +++++ |. +.+.|+|.||+||||.+ |..||
T Consensus 41 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-g~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~Dm 117 (444)
T PRK07205 41 QDVLEATLDLCQGLGFKTYLDPKGYYGYAEI-GQ--GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDD 117 (444)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCeEEEEEe-cC--CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccC
Confidence 5688899999999999987765443 66665 43 34789999999999973 66899
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCCh
Q 022852 63 SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDI 142 (291)
Q Consensus 63 ~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~ 142 (291)
|++++++|.|++.|++.+. +++++|.|+|++|||+++ .|++.+...... .+.+..+
T Consensus 118 Kgglaa~l~Al~~l~~~~~--~~~~~i~l~~~~dEE~g~-----~g~~~~~~~~~~-----------------~~~~~~~ 173 (444)
T PRK07205 118 KGPSMAALYAVKALLDAGV--QFNKRIRFIFGTDEETLW-----RCMNRYNEVEEQ-----------------ATMGFAP 173 (444)
T ss_pred cHHHHHHHHHHHHHHHcCC--CCCCcEEEEEECCcccCc-----ccHHHHHhCCCC-----------------CCeeECC
Confidence 9999999999999999887 788999999999999842 366655321100 0001111
Q ss_pred hh---HHhhhhcCCCCceeeEEEeeeccCccc----cc-cCcccce--E-----------EcccCc----EEEEEEEEec
Q 022852 143 AE---ESLLQLKYDPASVWGYIEVHIEQGPVL----EW-VGFPLGV--V-----------QGIAGQ----TRLKVTVRGS 197 (291)
Q Consensus 143 ~~---~~~~~~~~~~~~i~a~~elh~e~g~~~----~~-~~~~~gi--~-----------~~~~G~----~~~~i~v~Gk 197 (291)
+. ..+++ .. . ..+.+..+|.... +. .+..... . .+++|. .+.+|+++|+
T Consensus 174 ~~~~~v~~~e----kG-~-~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~ 247 (444)
T PRK07205 174 DSSFPLTYAE----KG-L-LQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGK 247 (444)
T ss_pred CCCCceEEEE----ec-e-EEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeE
Confidence 00 00000 00 0 0011222221100 00 0000000 0 112342 3449999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHh------cCCCCCcccCCCC-CccccccCCCCceEEEEEEeecCCCccccc
Q 022852 198 QGHAGTVPMSMRQDPMTAAAELIVLLERLC------KHPKDFLSYDGRS-NCSTLESLSSSLVCTVGEISSWPSASNVIP 270 (291)
Q Consensus 198 ~aHags~P~~~g~nAi~~aa~~i~~l~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vg~i~~G~~~~NvIP 270 (291)
++| +|+| +.|.|||..+++++.+|++.. ..... ...... -....++..+.+++|+|. .|+||
T Consensus 248 ~~H-ss~p-~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP 316 (444)
T PRK07205 248 SVH-AKDA-PQGINAVIRLAKALVVLEPHPALDFLANVIGE--DATGLNIFGDIEDEPSGKLSFNIAG-------LTITK 316 (444)
T ss_pred Ecc-cCCC-ccCcCHHHHHHHHHHhccHHHHHHHHHHhcCC--CCccccCCccccCCCcCCceEEeEE-------EEEEC
Confidence 999 5799 899999999999998886531 10000 000000 000001113456777754 48999
Q ss_pred CceeEEEeecceeeEEe
Q 022852 271 GEARNLSLDDGYFLLYS 287 (291)
Q Consensus 271 ~~a~~~~~D~r~~~~~~ 287 (291)
++|+ +.+|+|+.+-++
T Consensus 317 ~~a~-~~ld~R~~p~~~ 332 (444)
T PRK07205 317 EKSE-IRIDIRIPVLAD 332 (444)
T ss_pred CEEE-EEEEEeCCCCCC
Confidence 9999 999999998654
No 59
>PRK07079 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=210.15 Aligned_cols=232 Identities=16% Similarity=0.092 Sum_probs=152.4
Q ss_pred hHHHHHHHHH----HHHHHcCCeEEEc------ccccEEEEEeCCCCCCCEEEEcccCCCCCCC----------------
Q 022852 4 ASVRAGNLIR----QWMEDAGLRTWVD------HLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------- 57 (291)
Q Consensus 4 ~E~~~~~~i~----~~l~~~G~~v~~d------~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------- 57 (291)
++.++++|+. ++|+++|++++.. ...||++++.+. ++.|+|+|.||+||||.+
T Consensus 38 ~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~-~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~ 116 (469)
T PRK07079 38 RAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIED-DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEE 116 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCC-CCCCEEEEEcccCCCCCChHHhcccCCCCccccc
Confidence 3556777764 5899999998742 235799998543 235899999999999852
Q ss_pred -------CCCCcHHHHHHHHHHHHHHHHc-CCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCC
Q 022852 58 -------GIFDGSLGIITAISALKVLKST-GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGV 129 (291)
Q Consensus 58 -------g~~D~~~gv~a~l~a~~~L~~~-~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~ 129 (291)
|..|||++++++|.|+++|.+. +. +++++|.|++++|||+++ .|++.++...
T Consensus 117 dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~--~~~~~i~~~~~~dEE~g~-----~G~~~l~~~~------------- 176 (469)
T PRK07079 117 GDRWYGRGTADNKGQHTINLAALEQVLAARGG--RLGFNVKLLIEMGEEIGS-----PGLAEVCRQH------------- 176 (469)
T ss_pred CCEEEEEeccCCcHHHHHHHHHHHHHHHhcCC--CCCCCEEEEEECccccCC-----ccHHHHHHHh-------------
Confidence 5679999999999999998653 35 688999999999999842 3766543210
Q ss_pred cHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEec--CCCCCCCCCC
Q 022852 130 TVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRGS--QGHAGTVPMS 207 (291)
Q Consensus 130 ~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~Gk--~aHags~P~~ 207 (291)
. ..+. ++. + +..|++.. + .....+++++||..|++|+++|+ +.|| .+ +
T Consensus 177 ------~-~~~~------------~d~--~---iv~e~~~~-~--~~~~~i~~g~kG~~~~~v~v~G~~~~~hs--~~-~ 226 (469)
T PRK07079 177 ------R-EALA------------ADV--L---IASDGPRL-S--AERPTLFLGSRGAVNFRLRVNLRDGAHHS--GN-W 226 (469)
T ss_pred ------H-HhcC------------CCE--E---EEeCCCcc-C--CCCeEEEEecceEEEEEEEEeeCCCCCCC--Cc-c
Confidence 0 0011 111 1 22344321 0 11234778999999999999998 4464 34 4
Q ss_pred CC--CCHHHHHHHHHHHHHHHhcCCC--CC------------c---ccCCCCCcc---------cc---ccCCCCceEEE
Q 022852 208 MR--QDPMTAAAELIVLLERLCKHPK--DF------------L---SYDGRSNCS---------TL---ESLSSSLVCTV 256 (291)
Q Consensus 208 ~g--~nAi~~aa~~i~~l~~~~~~~~--~~------------~---~~~~~~~~~---------~~---~~~~~~~~~~v 256 (291)
.| .||+..++.+|.++.+...... .| + ......... .. .+....+++|+
T Consensus 227 ~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv 306 (469)
T PRK07079 227 GGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEV 306 (469)
T ss_pred ccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEE
Confidence 44 6999999999998854211100 00 0 000000000 00 01123568999
Q ss_pred EEEeecC--CCcccccCceeEEEeecceeeEEe
Q 022852 257 GEISSWP--SASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 257 g~i~~G~--~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+.|++|. .+.|+||++|+ +.+|+|+.|-.+
T Consensus 307 ~~i~gG~~~~~~NvVP~~a~-~~vdiR~~P~~~ 338 (469)
T PRK07079 307 LAFKTGNPDAPVNAIPGSAR-AVCQLRFVVGTD 338 (469)
T ss_pred EeeecCCCCCcceEecCceE-EEEEEEcCCCCC
Confidence 9999983 25899999999 999999998654
No 60
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.93 E-value=2.1e-24 Score=206.86 Aligned_cols=242 Identities=21% Similarity=0.184 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCCC--------------------CCCCcH
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVDA--------------------GIFDGS 63 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~--------------------g~~D~~ 63 (291)
++.++++||.++|+++|++++ ..+|+.+..... +..++|+|.||+||||.+ |..|||
T Consensus 32 ~~~~~~~~l~~~~~~~g~~~~--~~~~~~~~~~~~-~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~K 108 (447)
T TIGR01887 32 GPKKALDKFLELAKRDGFTTE--NVDNYAGYAEYG-QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDK 108 (447)
T ss_pred hHHHHHHHHHHHHHHcCceEE--EecCceEEEEeC-CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCc
Confidence 468999999999999999886 345655443211 234789999999999863 567999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChh
Q 022852 64 LGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIA 143 (291)
Q Consensus 64 ~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~ 143 (291)
++++++|.|++.|++.+. +++++|.|+|++|||.+ +.|++.+....... | .++.+|
T Consensus 109 G~laa~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g-----~~g~~~~l~~~~~~-----~------------~~~~~d 164 (447)
T TIGR01887 109 GPTIAALYAMKILKELGL--KLKKKIRFIFGTDEETG-----WACIDYYFEHEEAP-----D------------IGFTPD 164 (447)
T ss_pred HHHHHHHHHHHHHHHcCC--CCCCcEEEEEECCcccC-----cHhHHHHHHhcCCC-----C------------EEEeCC
Confidence 999999999999999887 78899999999999984 34666553221000 0 000000
Q ss_pred h---HHhhhhcCCCCceeeEEEeeeccCcc----------ccccCccc---ceEEccc-------------------CcE
Q 022852 144 E---ESLLQLKYDPASVWGYIEVHIEQGPV----------LEWVGFPL---GVVQGIA-------------------GQT 188 (291)
Q Consensus 144 ~---~~~~~~~~~~~~i~a~~elh~e~g~~----------~~~~~~~~---gi~~~~~-------------------G~~ 188 (291)
. ..+++ +. ..++++.+..+.. .++++... -.+.+++ |..
T Consensus 165 ~~~~~~~~e----~g--~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (447)
T TIGR01887 165 AEFPIIYGE----KG--IVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSF 238 (447)
T ss_pred CCcceEEEe----cC--eEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEE
Confidence 0 00011 00 1122222110000 01111111 1233444 666
Q ss_pred -----EEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHH--HHhcCCCC----Ccc---cCCCCCccccccCCCCceE
Q 022852 189 -----RLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLE--RLCKHPKD----FLS---YDGRSNCSTLESLSSSLVC 254 (291)
Q Consensus 189 -----~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~--~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~ 254 (291)
|++|+++|+++| +|+| +.|+|||..+++++.+++ +......+ .+. +-........++..+.+++
T Consensus 239 ~~~~~~~~i~v~G~~aH-ss~p-~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~ 316 (447)
T TIGR01887 239 EVNDGTATITLEGKSAH-GSAP-EKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTM 316 (447)
T ss_pred EecCCEEEEEEEeeecc-cCCC-ccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEE
Confidence 899999999999 6899 999999999999999986 22111000 000 0000000001122467899
Q ss_pred EEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 255 TVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 255 ~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
|+|.|++| . |++|+ +.+|+|+.+..+
T Consensus 317 nvg~I~~g-~-----p~~~~-~~~d~R~~p~~~ 342 (447)
T TIGR01887 317 NVGVIDYE-N-----AEAGL-IGLNVRYPVGND 342 (447)
T ss_pred EEEEEEEe-C-----CcEEE-EEEEEecCCCCC
Confidence 99999988 2 89999 999999988654
No 61
>PRK06156 hypothetical protein; Provisional
Probab=99.89 E-value=9.8e-22 Score=191.92 Aligned_cols=245 Identities=17% Similarity=0.155 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEcccccE-E-EEEeCCCCCCCEEEEcccCCCCCCC--------------------------
Q 022852 6 VRAGNLIRQWMEDAGLRTWVDHLGNV-H-GRVEGLNASAQALLIGSHLDTVVDA-------------------------- 57 (291)
Q Consensus 6 ~~~~~~i~~~l~~~G~~v~~d~~gnv-~-a~~~g~~~~~~~l~l~sH~DtV~~~-------------------------- 57 (291)
..+++||.++|+++|++++. .+|+ + ++++|. +.+.|+|+||+||||.+
T Consensus 75 ~~~~~~l~~~l~~~G~~~~~--~~~~v~~~~~~g~--~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGR 150 (520)
T PRK06156 75 IGFKKLLKSLARDFGLDYRN--VDNRVLEIGLGGS--GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGR 150 (520)
T ss_pred HHHHHHHHHHHHHCCCeEEe--cCCeEEEEEecCC--CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEc
Confidence 35679999999999998753 4674 4 677654 34799999999999852
Q ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc-chhhhccCCCCCcHHHHHH
Q 022852 58 GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP-VSALRVSDKSGVTVLDALR 136 (291)
Q Consensus 58 g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~-~~~~~~~d~~g~~~~e~l~ 136 (291)
|..|||+|++++|.+++.|.+.+. +++++|.|+|++|||.+ +.|++.+..... ++..-..|.+...
T Consensus 151 G~~D~Kgg~a~~l~a~~~l~~~~~--~~~~~i~~~~~~dEE~g-----~~G~~~~~~~~~~~~~~~~~D~~~~~------ 217 (520)
T PRK06156 151 GTEDDKGAIVTALYAMKAIKDSGL--PLARRIELLVYTTEETD-----GDPLKYYLERYTPPDYNITLDAEYPV------ 217 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHcCC--CCCceEEEEEecccccC-----chhHHHHHHhcCCCCeEEeeCCCCce------
Confidence 457999999999999999998887 77899999999999984 247776543211 1110000100000
Q ss_pred HCCCChhhHHhhhhcCC----------CCceeeEEEeeeccCccccccCcc---------------------cceEEccc
Q 022852 137 ENSIDIAEESLLQLKYD----------PASVWGYIEVHIEQGPVLEWVGFP---------------------LGVVQGIA 185 (291)
Q Consensus 137 ~~g~~~~~~~~~~~~~~----------~~~i~a~~elh~e~g~~~~~~~~~---------------------~gi~~~~~ 185 (291)
.++|+... .......+ ..+..|......... ...+.+++
T Consensus 218 ---------~~~E~~~~~~~i~~~~~~~~~~~~~l-~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (520)
T PRK06156 218 ---------VTAEKGWGTIMATFPKRAADGKGAEI-VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHG 287 (520)
T ss_pred ---------EEEecceEEEEEEecCcCCCCCceeE-EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcc
Confidence 00010000 00000000 000000000000000 00112244
Q ss_pred CcE---------EEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCC-----CCccc-------CCCCCccc
Q 022852 186 GQT---------RLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPK-----DFLSY-------DGRSNCST 244 (291)
Q Consensus 186 G~~---------~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~-----~~~~~-------~~~~~~~~ 244 (291)
|.. |++|+++|+++| +|.| +.|+|||..+++++.+|+++..... .++.. ........
T Consensus 288 g~~~~~~~~~~~~~~I~v~Gk~aH-sS~P-~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~ 365 (520)
T PRK06156 288 GGFSIDFKRDGKDVTITVTGKSAH-SSTP-ESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAY 365 (520)
T ss_pred cCceEEEEEcCCeEEEEEEeEECC-CCCC-CCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccc
Confidence 554 899999999999 6899 9999999999999999976211000 00000 00000000
Q ss_pred cccCCCCceEEEEEEeecCCCcccccCceeEEEeecceeeEEe
Q 022852 245 LESLSSSLVCTVGEISSWPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 245 ~~~~~~~~~~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
.++..+..+++++.|.+| . ++|+ +.+|+|+.|-++
T Consensus 366 ~~~~~g~~t~~~~~I~gg-~------~~~~-l~iDiR~~p~~~ 400 (520)
T PRK06156 366 KDDFMGPLTLSPTVVGQD-D------KGTE-VTVNLRRPVGKT 400 (520)
T ss_pred cCCCccCcEEeeeEEEEe-C------CeEE-EEEEeeCCCCCC
Confidence 112335678889999988 3 5899 999999999876
No 62
>PRK08554 peptidase; Reviewed
Probab=99.82 E-value=4.7e-19 Score=169.64 Aligned_cols=89 Identities=26% Similarity=0.240 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEEc---ccccEEEEEeCCCCCCCEEEEcccCCCCCCC---------------------CCC
Q 022852 5 SVRAGNLIRQWMEDAGLRTWVD---HLGNVHGRVEGLNASAQALLIGSHLDTVVDA---------------------GIF 60 (291)
Q Consensus 5 E~~~~~~i~~~l~~~G~~v~~d---~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~---------------------g~~ 60 (291)
|.++++|++++|+++|++++.. ...|+++.+ +. ..+.|+|.||+||||.+ |..
T Consensus 26 ~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~-~~--~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~ 102 (438)
T PRK08554 26 SKECPKFIKDTLESWGIESELIEKDGYYAVYGEI-GE--GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSA 102 (438)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEe-CC--CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcc
Confidence 6889999999999999987643 235788887 32 23789999999999974 567
Q ss_pred CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 022852 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGV 100 (291)
Q Consensus 61 D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~ 100 (291)
|||++++++|.|++.|++. .++++|.|+|++|||.+
T Consensus 103 DmKgg~aa~l~A~~~l~~~----~~~~~i~l~~~~dEE~g 138 (438)
T PRK08554 103 DDKGNVASVMLALKELSKE----PLNGKVIFAFTGDEEIG 138 (438)
T ss_pred cchHHHHHHHHHHHHHHhc----CCCCCEEEEEEcccccC
Confidence 9999999999999999874 46789999999999984
No 63
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.63 E-value=3.4e-16 Score=121.47 Aligned_cols=92 Identities=28% Similarity=0.335 Sum_probs=77.0
Q ss_pred EcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceEEEEEEee
Q 022852 182 QGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVCTVGEISS 261 (291)
Q Consensus 182 ~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~i~~ 261 (291)
++++|..+++|+++|+++|+ |.| +.|+||+..+++++..|+++..+... . ......+.++++++.|++
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~-s~~-~~g~nai~~~~~~l~~l~~~~~~~~~--------~--~~~~~~~~~~~~~~~i~g 68 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHS-SRP-EKGVNAIEAAARFLNALEELEFEWAF--------R--PEEFFPGPPTLNIGSIEG 68 (111)
T ss_dssp EEEEEEEEEEEEEESBSEET-TSG-GGSBCHHHHHHHHHHHHHHTTCHBTS--------T--HHHCTCTSEEEEEEEEEE
T ss_pred CcCCCEEEEEEEEEeeccCC-CCc-cCccCHHHHHHHHHHHHHHhhccccc--------c--cccccccccceeEeeccc
Confidence 36899999999999999995 699 99999999999999999988543210 0 000124789999999999
Q ss_pred cCCCcccccCceeEEEeecceeeEEe
Q 022852 262 WPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 262 G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
| .+.|+||++|+ +.+|+|++|.++
T Consensus 69 G-~~~n~ip~~a~-~~~~~R~~p~~~ 92 (111)
T PF07687_consen 69 G-TAPNVIPDEAT-LTVDIRYPPGED 92 (111)
T ss_dssp E-SSTTEESSEEE-EEEEEEESTCHH
T ss_pred C-CcCCEECCEEE-EEEEEECCCcch
Confidence 9 89999999999 999999998765
No 64
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.56 E-value=2.9e-14 Score=130.94 Aligned_cols=103 Identities=26% Similarity=0.323 Sum_probs=85.4
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcc--------------------cccEEEEEeCCCCCCCEEEEcccCCCCCC-----
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDH--------------------LGNVHGRVEGLNASAQALLIGSHLDTVVD----- 56 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~--------------------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~----- 56 (291)
|+.|.++++||+++|+++|++++... ..||+|+++|.. .+.|++.+|+|||++
T Consensus 51 S~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~ 128 (346)
T PRK10199 51 SPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDAD 128 (346)
T ss_pred CHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCCCc
Confidence 67899999999999999999875321 136999998843 478999999999964
Q ss_pred ----------CCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhcc
Q 022852 57 ----------AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 115 (291)
Q Consensus 57 ----------~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~ 115 (291)
-|+.|+++|++++|++++.|++. .++.+|.|+++++||.+ +.||++++..
T Consensus 129 ~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~----~~~~~I~fv~~~~EE~G-----l~GS~~~~~~ 188 (346)
T PRK10199 129 VDANLGGLTLQGMDDNAAGLGVMLELAERLKNV----PTEYGIRFVATSGEEEG-----KLGAENLLKR 188 (346)
T ss_pred cccCCCCcccCCccccHHHHHHHHHHHHHHhhC----CCCCcEEEEEECCcccC-----cHHHHHHHHh
Confidence 17899999999999999999865 46779999999999983 5699987543
No 65
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.32 E-value=7.2e-11 Score=108.33 Aligned_cols=235 Identities=20% Similarity=0.211 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHHcCCeEEEccc------cc--------EEEEEeCCCCCCCEEEEcccCCCCCCC------------
Q 022852 4 ASVRAGNLIRQWMEDAGLRTWVDHL------GN--------VHGRVEGLNASAQALLIGSHLDTVVDA------------ 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G~~v~~d~~------gn--------v~a~~~g~~~~~~~l~l~sH~DtV~~~------------ 57 (291)
+=+++++|+++.|+++|-+++.... .+ |.+++ |+++...++++.||+|++|.+
T Consensus 40 ~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~~-Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~L 118 (473)
T KOG2276|consen 40 EVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGVL-GSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTL 118 (473)
T ss_pred HHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhcc-cCCCCcceEEEEeeeeeeecCCCCCCcCCCeEE
Confidence 4578999999999999976553221 11 44554 777778899999999999975
Q ss_pred ----------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcchhhhccCCC
Q 022852 58 ----------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVSALRVSDKS 127 (291)
Q Consensus 58 ----------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~ 127 (291)
|..|+|+-+++.+.+++++.+.++ .++-+|.|+|..-||. ||..+.+
T Consensus 119 t~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~--~lpvnv~f~~EgmEEs--------gS~~L~~------------- 175 (473)
T KOG2276|consen 119 TEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGI--DLPVNVVFVFEGMEES--------GSEGLDE------------- 175 (473)
T ss_pred EEECCEEeccCcCCCCccchHHHHHHHHHHHhCc--cccceEEEEEEechhc--------cCccHHH-------------
Confidence 667999999999999999999998 8999999999999998 5543311
Q ss_pred CCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEcccCcEEEEEEEEe--cCCCCCCCC
Q 022852 128 GVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIAGQTRLKVTVRG--SQGHAGTVP 205 (291)
Q Consensus 128 g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~G~~~~~i~v~G--k~aHags~P 205 (291)
.+..+ +..+ + ..++. +.+.+...+++ ..+.+..|.+|...|.|+|.| +-.|||-.-
T Consensus 176 --l~~~~--kD~~-------~------~~vD~---vciSdnyWlg~--kkPcltyGlRG~~yf~i~v~g~~~DlHSGvfG 233 (473)
T KOG2276|consen 176 --LIEKE--KDKF-------F------KDVDF---VCISDNYWLGT--KKPCLTYGLRGVIYFQIEVEGPSKDLHSGVFG 233 (473)
T ss_pred --HHHHH--hhhh-------h------ccCCE---EEeeCceeccC--CCcccccccccceeEEEEEeeccccccccccc
Confidence 01000 1111 0 01222 33345555553 234455789999999999999 888987321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCC---------CCCc-----ccC----------CCCCccccccC----------CCC
Q 022852 206 MSMRQDPMTAAAELIVLLERLCKHP---------KDFL-----SYD----------GRSNCSTLESL----------SSS 251 (291)
Q Consensus 206 ~~~g~nAi~~aa~~i~~l~~~~~~~---------~~~~-----~~~----------~~~~~~~~~~~----------~~~ 251 (291)
-.-.-|+..+..++..|.+...+. .++. -|+ .....+. .+. =..
T Consensus 234 -G~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~-l~~~~k~~~l~~rWry 311 (473)
T KOG2276|consen 234 -GVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQM-LPTDDKKRILMHRWRY 311 (473)
T ss_pred -chhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccc-cccCchHHHhhhhccc
Confidence 111244444444444444322210 0000 000 0000000 000 124
Q ss_pred ceEEEEEEee---cCCCcccccCceeEEEeecceeeEEe
Q 022852 252 LVCTVGEISS---WPSASNVIPGEARNLSLDDGYFLLYS 287 (291)
Q Consensus 252 ~~~~vg~i~~---G~~~~NvIP~~a~~~~~D~r~~~~~~ 287 (291)
+++++..|.| ||.+.-|||.++. ..+-+|..|.-+
T Consensus 312 PSLsihgIeGaFs~pG~kTVIP~kVi-gkfSiRlVP~md 349 (473)
T KOG2276|consen 312 PSLSIHGIEGAFSGPGAKTVIPAKVV-GKFSIRLVPNMD 349 (473)
T ss_pred CccceecccceeeCCCceEEeehhhe-eeeEEEecCCCC
Confidence 5667767763 5678999999999 999999988643
No 66
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.31 E-value=4.2e-11 Score=110.88 Aligned_cols=181 Identities=19% Similarity=0.183 Sum_probs=125.7
Q ss_pred CHhHHHHHHHHHHHHHHcCC------eEEE-----c--ccccEEEEEeCCCCCCCEEEEcccCCCCCCC-----------
Q 022852 2 SPASVRAGNLIRQWMEDAGL------RTWV-----D--HLGNVHGRVEGLNASAQALLIGSHLDTVVDA----------- 57 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~------~v~~-----d--~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~----------- 57 (291)
|..|...+++|...|.++.+ +++. | ...||+|-++|.. ...+|++.||+|||...
T Consensus 26 T~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~-~k~tvvl~gH~DtV~iedYg~lKd~Afd 104 (553)
T COG4187 26 TPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGT-SKRTVVLHGHFDTVSIEDYGELKDLAFD 104 (553)
T ss_pred CcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCC-CCceEEEeeccceeecccccchhhhccC
Confidence 34678889999998888753 1222 3 2468999999843 35799999999999753
Q ss_pred --------------------------------CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCC
Q 022852 58 --------------------------------GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQST 105 (291)
Q Consensus 58 --------------------------------g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~ 105 (291)
|..|||+|+++.|+.++.+.+.. ..+|+|.|+.+||||..
T Consensus 105 p~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~~---~~~GNlLf~a~pdEE~~----- 176 (553)
T COG4187 105 PLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAART---DRQGNLLFMAVPDEEVE----- 176 (553)
T ss_pred HHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhCC---CCCCcEEEEeccchhhh-----
Confidence 66799999999999999998765 68999999999999984
Q ss_pred cccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCccccccCcccceEEccc
Q 022852 106 FLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWVGFPLGVVQGIA 185 (291)
Q Consensus 106 ~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~~~~~gi~~~~~ 185 (291)
..|.+.....++ ..-++.++. +.+. +..+......+....--+.+|..
T Consensus 177 s~G~r~a~~~L~---------------~L~kk~~l~---------------~~~~--IN~D~~~~~~dGd~~ryvYtGti 224 (553)
T COG4187 177 SRGMREARPALP---------------GLKKKFDLE---------------YTAA--INLDVTSDQGDGDQGRYVYTGTI 224 (553)
T ss_pred cccHHHHHHHHH---------------HHHHhhCce---------------EEEE--eccccccCCCCCccceEEEeccc
Confidence 236553321111 000111111 1111 22222212222222334668899
Q ss_pred CcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 022852 186 GQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLER 225 (291)
Q Consensus 186 G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~ 225 (291)
|..---.-|.|+..|+ +.| ..|+||-..++++..+|+-
T Consensus 225 GKLLp~f~vvG~etHv-G~~-f~Gvnan~maSei~~~le~ 262 (553)
T COG4187 225 GKLLPFFFVVGCETHV-GYP-FEGVNANFMASEITRRLEL 262 (553)
T ss_pred hhhcceeEEEeecccc-CCc-ccCCCHHHHHHHHHHHhhc
Confidence 9888889999999995 699 7999999999999998874
No 67
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.21 E-value=1.5e-11 Score=115.84 Aligned_cols=205 Identities=21% Similarity=0.117 Sum_probs=147.4
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEccccc-------------EEEEEeCCCCCCCEEEEcccCCCCCCC-----------
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGN-------------VHGRVEGLNASAQALLIGSHLDTVVDA----------- 57 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gn-------------v~a~~~g~~~~~~~l~l~sH~DtV~~~----------- 57 (291)
|++|.+++.++.+|++.+|+.++ |+.+| +.+++++....-|.+-+.+|+||++..
T Consensus 21 S~~e~~~~p~~~~~~k~~~~~v~-dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~ 99 (414)
T COG2195 21 SKHEKAVAPSTVGQAKLLGLLVE-DELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILK 99 (414)
T ss_pred CCCccccccccHHHHHHcCchhh-hhhccccccccccCCCCeeeEEeeccccccccccccccccccccccccccCCceee
Confidence 77899999999999999999985 54332 556676654344678888999999521
Q ss_pred ---C--------------------------------------CCCcHHHHHHHHHHHHHHHHc--CCCCCCCCCEEEEEe
Q 022852 58 ---G--------------------------------------IFDGSLGIITAISALKVLKST--GKLGKLKRPVEVIAF 94 (291)
Q Consensus 58 ---g--------------------------------------~~D~~~gv~a~l~a~~~L~~~--~~~~~~~~~i~~v~~ 94 (291)
| +.|.|+|++.++.++..+.+. . -+.++|++.|+
T Consensus 100 ~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~~~---i~h~~i~~g~s 176 (414)
T COG2195 100 ATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKHPE---IPHGGIRGGFS 176 (414)
T ss_pred eccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcCcc---ccccCeEEEec
Confidence 1 247899999999999999966 4 37899999999
Q ss_pred cCCCCcccCCCcccchhhhccCcchhhhccCCCCCcHHHHHHHCCCChhhHHhhhhcCCCCceeeEEEeeeccCcccccc
Q 022852 95 SDEEGVRFQSTFLGSAALAGILPVSALRVSDKSGVTVLDALRENSIDIAEESLLQLKYDPASVWGYIEVHIEQGPVLEWV 174 (291)
Q Consensus 95 ~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~~d~~g~~~~e~l~~~g~~~~~~~~~~~~~~~~~i~a~~elh~e~g~~~~~~ 174 (291)
++||.+ ++|+..+ .+...+.+..+ .++.++
T Consensus 177 ~~Ee~g-----~rg~~~~-----------------~~a~f~a~~ay-----------------------~iDGg~----- 206 (414)
T COG2195 177 PDEEIG-----GRGAANK-----------------DVARFLADFAY-----------------------TLDGGP----- 206 (414)
T ss_pred chHHhh-----hhhhhhc-----------------cHHhhhcceeE-----------------------ecCCCc-----
Confidence 999985 2476643 11111111111 111111
Q ss_pred CcccceEEcccCcEEEEEEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccccCCCCceE
Q 022852 175 GFPLGVVQGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRSNCSTLESLSSSLVC 254 (291)
Q Consensus 175 ~~~~gi~~~~~G~~~~~i~v~Gk~aHags~P~~~g~nAi~~aa~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
...+.....+...+++++.|+..|+++.+ ....||+..+.+++..+..-. ....++.
T Consensus 207 --~g~i~~ea~~~~~~~~~~~g~~~h~~~a~-~~~i~a~~~a~e~~~~~~~~~--------------------~~e~t~~ 263 (414)
T COG2195 207 --VGEIPREAFNAAAVRATIVGPNVHPGSAK-GKMINALLLAAEFILELPLEE--------------------VPELTEG 263 (414)
T ss_pred --cCeeeeeccchheeeeeeeccCcCccchH-HHHhhHHHhhhhhhhcCCccc--------------------ccccccc
Confidence 12233446678889999999999998888 888999998888876555321 1235667
Q ss_pred EEEEEeecCCCcccccCceeEEEeecceeeE
Q 022852 255 TVGEISSWPSASNVIPGEARNLSLDDGYFLL 285 (291)
Q Consensus 255 ~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~~ 285 (291)
+.|..+.+ +..|.|.+++. +..++|-+..
T Consensus 264 ~~Gv~~~~-~~~~~V~~~s~-~~~~iR~~d~ 292 (414)
T COG2195 264 PEGVYHLG-DSTNSVEETSL-NLAIIRDFDN 292 (414)
T ss_pred cceEEecc-ccccchhhhhh-hhhhhhhcch
Confidence 78999998 99999999999 8988887654
No 68
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.21 E-value=1e-10 Score=108.51 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=84.4
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCC--------C---------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~--------~--------------- 57 (291)
.|+.|.+++++|+++|+++|+++++|..||++|+++|.. +.+.|+|.+|||+|.- |
T Consensus 18 ~SG~E~~V~~~l~~~l~~~g~ev~~D~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~V~~I~~~G~l~~~~iGG~~~~~l 96 (343)
T TIGR03106 18 PTGFTDAVVRYVAERLEDLGIEYELTRRGAIRATLPGRE-ATPARAVVTHLDTLGAMVRELKDNGRLELVPIGHWSARFA 96 (343)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEECCCeEEEEEECCCC-CCCeEEEEEeeccccceeeEECCCCeEEEEecCCCcccce
Confidence 378999999999999999999999999999999987742 3479999999999963 1
Q ss_pred -----------C--------------------------------------------------------------------
Q 022852 58 -----------G-------------------------------------------------------------------- 58 (291)
Q Consensus 58 -----------g-------------------------------------------------------------------- 58 (291)
|
T Consensus 97 ~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd~v~~~~~~~~~~~~~ 176 (343)
T TIGR03106 97 EGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGDFVAFDPQPEFLANGF 176 (343)
T ss_pred eCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCCEEEECCccEEecCCE
Confidence 0
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcc
Q 022852 59 ----IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVR 101 (291)
Q Consensus 59 ----~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~ 101 (291)
+.|||+|+++++++++.|++.+. +++.+|.++|+++||.++
T Consensus 177 i~gr~~D~K~G~a~~l~~~~~l~~~~~--~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 177 IVSRHLDDKAGVAALLAALKAIVEHKV--PLPVDVHPLFTITEEVGS 221 (343)
T ss_pred EEEEecccHHhHHHHHHHHHHHHhcCC--CCCceEEEEEECCcccCc
Confidence 14789999999999999998765 678999999999999853
No 69
>PRK09961 exoaminopeptidase; Provisional
Probab=99.09 E-value=5.2e-10 Score=103.97 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=88.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCC--------C---------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~--------~--------------- 57 (291)
.|+.|.+++++++++|+++|.++++|..||++++++|. ..+.|+|.+|||+|+- |
T Consensus 15 ~sG~E~~v~~~i~~~l~~~~~~v~~D~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~~~G~l~~~~vGG~~~~~~ 92 (344)
T PRK09961 15 IASSEQEVRQILLEEADRLQKEVRFDGLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAAR 92 (344)
T ss_pred CCCChHHHHHHHHHHHHhhCCEEEECCCCCEEEEEcCC--CCCEEEEEeccceeceEEEEECCCceEEEEeCCCcccccc
Confidence 37899999999999999999999999999999988663 2479999999999964 1
Q ss_pred -----------C-----------------------------------------------------------CCCcHHHHH
Q 022852 58 -----------G-----------------------------------------------------------IFDGSLGII 67 (291)
Q Consensus 58 -----------g-----------------------------------------------------------~~D~~~gv~ 67 (291)
| +.|++.|++
T Consensus 93 ~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~gkalDnR~g~~ 172 (344)
T PRK09961 93 QLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCY 172 (344)
T ss_pred CCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEEEeechhhHhHH
Confidence 1 136689999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch
Q 022852 68 TAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS 119 (291)
Q Consensus 68 a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~ 119 (291)
+++++++.|++. ++..+|+++|+..||.+ ..|++..+..++++
T Consensus 173 ~lle~l~~l~~~----~~~~~v~~~~tvqEEvG-----~rGa~~aa~~i~pd 215 (344)
T PRK09961 173 LLVTLLRELHDA----ELPAEVWLVASSSEEVG-----LRGGQTATRAVSPD 215 (344)
T ss_pred HHHHHHHHhhhc----CCCceEEEEEEcccccc-----hHHHHHHHhccCCC
Confidence 999999999765 46789999999999984 45887665544443
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.08 E-value=5.2e-10 Score=103.93 Aligned_cols=110 Identities=21% Similarity=0.222 Sum_probs=90.0
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCC--------C---------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~--------~--------------- 57 (291)
.|+.|.+++++++++|++++.++++|..||++|.++|.....+.|++.+|||+|.- |
T Consensus 13 pSG~E~~v~~~i~~~l~~~~~~v~~D~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~~~~vGG~~~~~l 92 (350)
T TIGR03107 13 TSGFEHPIRDYLRQDITPLVDQVETDGLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFRVVELGGWNPLVV 92 (350)
T ss_pred CCCCcHHHHHHHHHHHHhhCCEEEECCCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEEEEeCCCcccccc
Confidence 48899999999999999999999999999999998663123479999999999963 1
Q ss_pred -----------C--------------------------------------------------------------------
Q 022852 58 -----------G-------------------------------------------------------------------- 58 (291)
Q Consensus 58 -----------g-------------------------------------------------------------------- 58 (291)
|
T Consensus 93 ~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~~~~~~~~~~~~i 172 (350)
T TIGR03107 93 SSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQTETILTANGKNV 172 (350)
T ss_pred CCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEECCCeEEEcCCCEE
Confidence 0
Q ss_pred ---CCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch
Q 022852 59 ---IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS 119 (291)
Q Consensus 59 ---~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~ 119 (291)
+.|++.|+++++++++.|++. +++.+|+++|++-||.+ +.||+..+..++++
T Consensus 173 ~~kalDdR~g~a~l~e~l~~l~~~----~~~~~l~~~~tvqEEvG-----~rGA~~aa~~i~pD 227 (350)
T TIGR03107 173 ISKAWDNRYGVLMILELLESLKDQ----ELPNTLIAGANVQEEVG-----LRGAHVSTTKFNPD 227 (350)
T ss_pred EEeccccHHHHHHHHHHHHHhhhc----CCCceEEEEEEChhhcC-----chhhhhHHhhCCCC
Confidence 147789999999999999865 46789999999999984 46888765555443
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.05 E-value=9.4e-10 Score=101.57 Aligned_cols=109 Identities=24% Similarity=0.281 Sum_probs=91.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCC--------C---------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~--------~--------------- 57 (291)
.|+.|.+++++++++|++++.++++|..||++++.+|.+ +.+.+++.+|||+|-. |
T Consensus 17 psG~E~eVr~~~~~el~~~~~ev~~D~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~ 95 (355)
T COG1363 17 PSGYEEEVRDVLKEELEPLGDEVEVDRLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVL 95 (355)
T ss_pred CCCcHHHHHHHHHHHHHHhCCceEEcCCCcEEEEecCCC-CCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhc
Confidence 478999999999999999999999999999999998832 2356999999999842 1
Q ss_pred --------------------------------------------------------------------------------
Q 022852 58 -------------------------------------------------------------------------------- 57 (291)
Q Consensus 58 -------------------------------------------------------------------------------- 57 (291)
T Consensus 96 ~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~ 175 (355)
T COG1363 96 EGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVV 175 (355)
T ss_pred cCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEE
Confidence
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch
Q 022852 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS 119 (291)
Q Consensus 58 -g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~ 119 (291)
=.+|++.|++++|++++.| + +. .++.+++++|++-||.+ +.||+..+..+.++
T Consensus 176 skalDdR~gva~lle~lk~l-~-~~--~~~~~vy~v~tvqEEVG-----lrGA~~~a~~i~pd 229 (355)
T COG1363 176 SKALDDRAGVAALLELLKEL-K-GI--ELPADVYFVASVQEEVG-----LRGAKTSAFRIKPD 229 (355)
T ss_pred eeeccchHhHHHHHHHHHHh-c-cC--CCCceEEEEEecchhhc-----cchhhccccccCCC
Confidence 0158899999999999999 4 44 68899999999999984 56998877766654
No 72
>PRK09864 putative peptidase; Provisional
Probab=98.91 E-value=5.7e-09 Score=97.00 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=87.0
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEcccccEEEEEeCCCCCCCEEEEcccCCCCCC--------C---------------
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNASAQALLIGSHLDTVVD--------A--------------- 57 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~--------~--------------- 57 (291)
.|+.|.+++++++++|+.++.++++|..||+++.. |. ..+.|+|.+|||+|.- |
T Consensus 15 ~SG~E~~v~~~l~~~l~~~~dev~~D~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~~~G~l~~~~lGG~~~~~l 91 (356)
T PRK09864 15 VSGDEQEVRDILINTLEPCVNEITFDGLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSM 91 (356)
T ss_pred CCCchHHHHHHHHHHHHHhCCEEEECCCCCEEEEe-CC--CCcEEEEEecccccCEEEEEECCCCeEEEEeCCCcCcccc
Confidence 48899999999999999999999999999999986 52 2469999999999963 1
Q ss_pred -----------C--------------------------------------------------------------------
Q 022852 58 -----------G-------------------------------------------------------------------- 58 (291)
Q Consensus 58 -----------g-------------------------------------------------------------------- 58 (291)
|
T Consensus 92 ~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~~~~l~~~~i~~ 171 (356)
T PRK09864 92 LNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEANFACWGEDKVVG 171 (356)
T ss_pred CCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCCcEEEcCCEEEE
Confidence 0
Q ss_pred -CCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCcch
Q 022852 59 -IFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILPVS 119 (291)
Q Consensus 59 -~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~~~ 119 (291)
+.|++.|+++++++++.|++ ++.+|+++|++-||.+ +.||+..+..++++
T Consensus 172 kalDnR~g~~~lle~l~~l~~------~~~~vy~v~TvQEEvG-----lrGA~~aa~~i~PD 222 (356)
T PRK09864 172 KALDNRIGCAMMAELLQTVNN------PEITLYGVGSVEEEVG-----LRGAQTSAEHIKPD 222 (356)
T ss_pred EeCccHHHHHHHHHHHHHhhc------CCCeEEEEEEcchhcc-----hHHHHHHHhcCCCC
Confidence 14788999999999998863 4578999999999984 56988776666554
No 73
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.82 E-value=7.4e-09 Score=87.26 Aligned_cols=61 Identities=34% Similarity=0.394 Sum_probs=49.7
Q ss_pred EEcccCCCCCC-------------------C-CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCC
Q 022852 46 LIGSHLDTVVD-------------------A-GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQST 105 (291)
Q Consensus 46 ~l~sH~DtV~~-------------------~-g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~ 105 (291)
+|.+|+||||. + |..|+|++++++|.+++.|++.+. +++++|.|+|+++||.++
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~--~~~~~i~~~~~~~EE~g~---- 74 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGD--DLPGNIIFLFTPDEEIGS---- 74 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTT--TCSSEEEEEEESTCCGTS----
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccc--cccccccccccccccCCC----
Confidence 57899999991 1 667999999999999999998777 899999999999999853
Q ss_pred cccchhh
Q 022852 106 FLGSAAL 112 (291)
Q Consensus 106 ~~Gs~~~ 112 (291)
..|++.+
T Consensus 75 ~~g~~~l 81 (189)
T PF01546_consen 75 IGGAKHL 81 (189)
T ss_dssp TTHHHHH
T ss_pred cchhhhh
Confidence 1166654
No 74
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.62 E-value=4.2e-08 Score=82.49 Aligned_cols=64 Identities=31% Similarity=0.499 Sum_probs=53.1
Q ss_pred EEEEcccCCCCC-------CCCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhc
Q 022852 44 ALLIGSHLDTVV-------DAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 114 (291)
Q Consensus 44 ~l~l~sH~DtV~-------~~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~ 114 (291)
.|++++|+|++. ..|+.|..+|++++|++++.|++.+. +++++|+|+|+.+||. ++.||+.++.
T Consensus 2 ~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~--~~~~~i~fv~~~~EE~-----gl~GS~~~~~ 72 (179)
T PF04389_consen 2 YIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKP--QPKRTIRFVFFDGEEQ-----GLLGSRAFVE 72 (179)
T ss_dssp EEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTH--SSSEEEEEEEESSGGG-----TSHHHHHHHH
T ss_pred EEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhc--ccCccEEEEEeccccc-----CccchHHHHH
Confidence 589999999976 34889999999999999999999765 6788999999999998 4679998753
No 75
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.41 E-value=1.3e-06 Score=87.83 Aligned_cols=107 Identities=25% Similarity=0.384 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHcC---------CeEEEc----------------ccccEEEEEeCCCC-CCCEEEEcccCCCCCCC
Q 022852 4 ASVRAGNLIRQWMEDAG---------LRTWVD----------------HLGNVHGRVEGLNA-SAQALLIGSHLDTVVDA 57 (291)
Q Consensus 4 ~E~~~~~~i~~~l~~~G---------~~v~~d----------------~~gnv~a~~~g~~~-~~~~l~l~sH~DtV~~~ 57 (291)
+|..+.+++.+++++.. +|+..+ ..-||+.++.+..+ +.-.|++++|.|+||.+
T Consensus 79 ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~ 158 (834)
T KOG2194|consen 79 NEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKISPKNGNDKNALLLNAHFDSVPTG 158 (834)
T ss_pred hHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecCCCCCCccceeeeeccccccCCC
Confidence 46688888888877642 222111 12478888865433 33489999999999986
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc
Q 022852 58 -GIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (291)
Q Consensus 58 -g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (291)
|+.|+-.+++++|+++|.+..... .++++|+|+|..+||. .+.||..+..+.+
T Consensus 159 ~gAtDDg~~va~mLe~lRv~s~~~~--~l~~~vVFLfNgaEE~-----~L~gsH~FItQH~ 212 (834)
T KOG2194|consen 159 PGATDDGSGVASMLEALRVLSKSDK--LLTHSVVFLFNGAEES-----GLLGSHAFITQHP 212 (834)
T ss_pred CCCCcchhHHHHHHHHHHHhhcCCC--cccccEEEEecCcccc-----hhhhcccceecCh
Confidence 778888999999999999998865 6799999999999998 4679988877444
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.83 E-value=2.3e-05 Score=71.34 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhcc
Q 022852 60 FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGI 115 (291)
Q Consensus 60 ~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~ 115 (291)
.|++.|+++++++++.|++.+ ++.+|+++|++-||.+ +.|++..+..
T Consensus 133 lDdR~g~~~lle~l~~l~~~~----~~~~v~~v~tvqEEvG-----~rGA~~aa~~ 179 (292)
T PF05343_consen 133 LDDRAGCAVLLELLRELKEKE----LDVDVYFVFTVQEEVG-----LRGAKTAAFR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-----SSEEEEEEESSCTTT-----SHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhcC----CCceEEEEEEeeeeec-----Ccceeecccc
Confidence 367899999999999998764 5589999999999984 4588865443
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=97.74 E-value=9.8e-05 Score=70.73 Aligned_cols=67 Identities=34% Similarity=0.501 Sum_probs=58.4
Q ss_pred CCEEEEcccCCCCCC-CCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcccchhhhccCc
Q 022852 42 AQALLIGSHLDTVVD-AGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAGILP 117 (291)
Q Consensus 42 ~~~l~l~sH~DtV~~-~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~~~~ 117 (291)
...+++.+|+|+++. -|+.|+..|++++|+++|.|+.. .++.+|.|+++..||. ++.||.+++.++.
T Consensus 208 ~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~----~p~~~v~f~~~~aEE~-----Gl~GS~~~~~~~~ 275 (435)
T COG2234 208 DSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN----PPKRTVRFVAFGAEES-----GLLGSEAYVKRLS 275 (435)
T ss_pred CceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC----CCCceEEEEEecchhh-----cccccHHHHhcCC
Confidence 367778899999887 49999999999999999999987 5789999999999998 4679999987765
No 78
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=97.62 E-value=0.00019 Score=72.15 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=64.1
Q ss_pred cccccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHH---HHcCCCCCCCCCEEEEEecCCCCccc
Q 022852 26 DHLGNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVL---KSTGKLGKLKRPVEVIAFSDEEGVRF 102 (291)
Q Consensus 26 d~~gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L---~~~~~~~~~~~~i~~v~~~dEE~~~~ 102 (291)
...-||+++++|+.....-|++++|-|.+-.| +.|...|.+.++++++++ ++.+. +|+++|+|+.|.+||.
T Consensus 336 ~ki~NIig~I~Gs~epD~~ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~~~k~gw--rP~RtI~F~sWdAeEf--- 409 (702)
T KOG2195|consen 336 TKIQNIIGKIEGSEEPDRYVIIGAHRDSWTFG-AIDPNSGTALLLEIARALSKLKKRGW--RPRRTILFASWDAEEF--- 409 (702)
T ss_pred eeeeeEEEEEecCcCCCeEEEEeccccccccC-CcCCCccHHHHHHHHHHHHHHHHcCC--CccceEEEEEccchhc---
Confidence 34578999999965556889999999999777 777777777777777766 45677 8999999999999998
Q ss_pred CCCcccchhhh
Q 022852 103 QSTFLGSAALA 113 (291)
Q Consensus 103 ~~~~~Gs~~~~ 113 (291)
++.||-.++
T Consensus 410 --GliGStE~~ 418 (702)
T KOG2195|consen 410 --GLLGSTEWA 418 (702)
T ss_pred --cccccHHHH
Confidence 457887654
No 79
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0057 Score=54.54 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=80.2
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcc-----------cccEEEEEeCCCCCCCEEEEcccCCCC-CCC----CCCCcHHH
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDH-----------LGNVHGRVEGLNASAQALLIGSHLDTV-VDA----GIFDGSLG 65 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~-----------~gnv~a~~~g~~~~~~~l~l~sH~DtV-~~~----g~~D~~~g 65 (291)
|..-+++.+||.+.|+.+|+.|+.+. ..|+++++... ...-+++.+|+|+- +++ |+.|-..-
T Consensus 68 s~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~--A~r~lVlachydsk~~p~~~~vgatdsAvp 145 (338)
T KOG3946|consen 68 SPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPN--ASRYLVLACHYDSKIFPGGMFVGATDSAVP 145 (338)
T ss_pred CCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCC--cchheeeecccccccCCCcceEeecccccc
Confidence 45678899999999999999887653 35799998643 34679999999996 333 55677777
Q ss_pred HHHHHHHHHHHHHcCC--CCCCCCCEEEEEecCCCCcc---cCCCcccchhhhcc
Q 022852 66 IITAISALKVLKSTGK--LGKLKRPVEVIAFSDEEGVR---FQSTFLGSAALAGI 115 (291)
Q Consensus 66 v~a~l~a~~~L~~~~~--~~~~~~~i~~v~~~dEE~~~---~~~~~~Gs~~~~~~ 115 (291)
+++++..+++|...-. ....+-.+.++|.-+||.-+ -.-+.-||++++.+
T Consensus 146 camll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 146 CAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAK 200 (338)
T ss_pred HHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHH
Confidence 8888999888854211 01345679999999999421 12245688887654
No 80
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=95.85 E-value=0.028 Score=49.57 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=52.1
Q ss_pred CEEEEcccCCCCC--CC---CCCCcHHHHHHHHHHHHHHHHc-CCCCCCCCCEEEEEecCCCCcccCCCcccchhhhc
Q 022852 43 QALLIGSHLDTVV--DA---GIFDGSLGIITAISALKVLKST-GKLGKLKRPVEVIAFSDEEGVRFQSTFLGSAALAG 114 (291)
Q Consensus 43 ~~l~l~sH~DtV~--~~---g~~D~~~gv~a~l~a~~~L~~~-~~~~~~~~~i~~v~~~dEE~~~~~~~~~Gs~~~~~ 114 (291)
|.|++.+.||+.- ++ |+.+...|+++.|+++++|.+. .....++++|.|+|+.+|-. +..||+.++.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~-----dYiGS~R~vy 73 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF-----DYIGSSRFVY 73 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc-----cccchHHHHH
Confidence 4688889999863 33 6666779999999999999765 21125789999999999998 4579997754
No 81
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=95.17 E-value=0.35 Score=44.90 Aligned_cols=79 Identities=28% Similarity=0.317 Sum_probs=56.7
Q ss_pred ccEEEEEeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCC---
Q 022852 29 GNVHGRVEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQST--- 105 (291)
Q Consensus 29 gnv~a~~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~--- 105 (291)
.|+|+.-.+ ....+++.+|.|+.. .|..|+..|++++++++..|...+. ...++.+++||.+.++..
T Consensus 179 y~~Ia~~~~---en~vv~i~AH~DHW~-~G~tDN~lg~~~AV~~~~~lr~~~~------~~~lv~FtAEE~g~p~~~sfy 248 (486)
T COG4882 179 YNVIAVDGG---ENGVVLIGAHLDHWY-TGFTDNILGVAQAVETAGRLRGRGL------AAGLVVFTAEEHGMPGMASFY 248 (486)
T ss_pred EEEEEecCC---CCCceEEeechhhhh-hcccchhhhHHHHHHHHHHHhhcCc------ceeEEEEeccccCCCCCccee
Confidence 356665433 235899999999965 5678999999999999999987653 467788888998765432
Q ss_pred -cccchhhhccCc
Q 022852 106 -FLGSAALAGILP 117 (291)
Q Consensus 106 -~~Gs~~~~~~~~ 117 (291)
..||+.+.+..+
T Consensus 249 Wa~GSr~~lk~~k 261 (486)
T COG4882 249 WAAGSRGLLKESK 261 (486)
T ss_pred ecccchHHHhhcC
Confidence 247777666554
No 82
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=88.47 E-value=1.7 Score=41.33 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=55.7
Q ss_pred ccEEEEEe-CCC-----CCCCEEEEcccCCCCCCC-----CCCCcHHHHHHHHHHHHHHHHcCC--CCCCCCCEEEEEec
Q 022852 29 GNVHGRVE-GLN-----ASAQALLIGSHLDTVVDA-----GIFDGSLGIITAISALKVLKSTGK--LGKLKRPVEVIAFS 95 (291)
Q Consensus 29 gnv~a~~~-g~~-----~~~~~l~l~sH~DtV~~~-----g~~D~~~gv~a~l~a~~~L~~~~~--~~~~~~~i~~v~~~ 95 (291)
.|+.+++. |-+ .+.|+|++.+|+||.-.. |+.-+-.|+.+.|+.++.+..... .+..+.++.|+.+.
T Consensus 194 ~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~ 273 (555)
T KOG2526|consen 194 LNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTA 273 (555)
T ss_pred ceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEcc
Confidence 47888886 432 357999999999997542 333345788888999998876431 11356789998887
Q ss_pred CCCCcccCCCcccchhhhc
Q 022852 96 DEEGVRFQSTFLGSAALAG 114 (291)
Q Consensus 96 dEE~~~~~~~~~Gs~~~~~ 114 (291)
+--- +..|++.|..
T Consensus 274 aG~l-----NyqGTkkWLe 287 (555)
T KOG2526|consen 274 AGKL-----NYQGTKKWLE 287 (555)
T ss_pred Cccc-----cccchhhhhh
Confidence 6332 4568887643
No 83
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=79.63 E-value=19 Score=35.09 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCeEEEcc--------cccEEEEEeCCCCCCCEEEEcccCCCC--------------CCCCCC----
Q 022852 7 RAGNLIRQWMEDAGLRTWVDH--------LGNVHGRVEGLNASAQALLIGSHLDTV--------------VDAGIF---- 60 (291)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d~--------~gnv~a~~~g~~~~~~~l~l~sH~DtV--------------~~~g~~---- 60 (291)
..++++++.+++.|++|++-. ++-+++.=+|+.. .|.++...+...- +..|+.
T Consensus 175 ~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l~Y~g~~~~~~~i~LVGKGiTFDsGG~slKp 253 (468)
T cd00433 175 YLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVLEYKGKGASKKPIALVGKGITFDTGGLSLKP 253 (468)
T ss_pred HHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEEEECCCCCCCCcEEEEcCceEecCCCccccC
Confidence 356777888888899887522 2334444444321 2333333322111 011332
Q ss_pred ---------CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 022852 61 ---------DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (291)
Q Consensus 61 ---------D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~ 99 (291)
|| +|-|+.+++++++.+.+ ++.+|..+.-..|--
T Consensus 254 ~~~M~~Mk~DM-~GAAaVlga~~aia~l~----~~vnV~~i~~~~EN~ 296 (468)
T cd00433 254 AAGMDGMKYDM-GGAAAVLGAMKAIAELK----LPVNVVGVLPLAENM 296 (468)
T ss_pred ccChhhccccc-hhHHHHHHHHHHHHHcC----CCceEEEEEEeeecC
Confidence 34 67778899999999874 677888888777764
No 84
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=73.97 E-value=47 Score=30.61 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCeEEEcc--------c-------------cc-EEEEEeCCC-CCCCEEEEccc---CCC-----CC
Q 022852 7 RAGNLIRQWMEDAGLRTWVDH--------L-------------GN-VHGRVEGLN-ASAQALLIGSH---LDT-----VV 55 (291)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d~--------~-------------gn-v~a~~~g~~-~~~~~l~l~sH---~Dt-----V~ 55 (291)
..++++++.+++.|++|++-. + +. |+-+|.|.. ...+.|.|.|. +|| -|
T Consensus 19 ~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i~LVGKGiTFDtGG~~lKp 98 (311)
T PF00883_consen 19 TFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPIALVGKGITFDTGGLSLKP 98 (311)
T ss_dssp HHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEEEEEEEEEEEEE-TTSSSC
T ss_pred HHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccEEEEcceEEEecCCccCCC
Confidence 467889999999999887521 0 12 566677655 44567777753 222 22
Q ss_pred CCCC----CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 022852 56 DAGI----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (291)
Q Consensus 56 ~~g~----~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~ 99 (291)
.++= .|| +|-++.+++++++.+.+ ++.+|..+.-..|--
T Consensus 99 ~~~M~~Mk~DM-~GAAaV~ga~~aia~lk----~~vnV~~~l~~~EN~ 141 (311)
T PF00883_consen 99 SGGMEGMKYDM-GGAAAVLGAMRAIAKLK----LPVNVVAVLPLAENM 141 (311)
T ss_dssp STTGGGGGGGG-HHHHHHHHHHHHHHHCT-----SSEEEEEEEEEEE-
T ss_pred CcchhhcccCc-chHHHHHHHHHHHHHcC----CCceEEEEEEccccc
Confidence 2222 244 66677889999999875 567888887777664
No 85
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=70.82 E-value=11 Score=37.10 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=51.7
Q ss_pred ccEEEEEeCCCC-CCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCcccCCCcc
Q 022852 29 GNVHGRVEGLNA-SAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGVRFQSTFL 107 (291)
Q Consensus 29 gnv~a~~~g~~~-~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~~~~~~~~ 107 (291)
-|++|.++..|. +..++++..-+++.. +.. ...|++-+|+.++++++... +.+||+|+++.+|..
T Consensus 4 ~nvy~i~rapR~d~tEaivl~~~~~~~~--~~~-n~~~v~l~lal~~~~~~~~~---wsKDii~l~~~~~~~-------- 69 (504)
T PF04114_consen 4 TNVYGILRAPRGDGTEAIVLVVPWRDSD--GEY-NAGGVALALALARYFRRQSY---WSKDIIFLFTDDELA-------- 69 (504)
T ss_pred eEEEEEEecCCCCCceeEEEEEecCCCC--ccc-chhhHHHHHHHHHHhhhchh---hhccEEEEecCCcch--------
Confidence 379999876543 346788877665432 222 36788888999999998764 789999999876554
Q ss_pred cchhhhcc
Q 022852 108 GSAALAGI 115 (291)
Q Consensus 108 Gs~~~~~~ 115 (291)
|.+.+...
T Consensus 70 g~~awl~~ 77 (504)
T PF04114_consen 70 GMQAWLEA 77 (504)
T ss_pred HHHHHHHH
Confidence 77766543
No 86
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.72 E-value=25 Score=34.89 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCeEEEccc----------ccEEEEEeCCCCC-CCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 022852 10 NLIRQWMEDAGLRTWVDHL----------GNVHGRVEGLNAS-AQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKS 78 (291)
Q Consensus 10 ~~i~~~l~~~G~~v~~d~~----------gnv~a~~~g~~~~-~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~ 78 (291)
.++..++++.|.++..... .||++.+++.|.+ ...+++.--++-- .+. | ..+++-++..++.+++
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~vP~~~~--~~~-~-~~~v~l~lsla~~f~r 167 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLVVPYGRS--SGS-N-SASVALLLSLADYFSR 167 (617)
T ss_pred hHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEEEecccC--CCc-c-hhHHHHHHHHHHHhcC
Confidence 4567788888998765443 4899999875543 3567775333321 122 2 4555555666777766
Q ss_pred cCCCCCCCCCEEEEEecCC
Q 022852 79 TGKLGKLKRPVEVIAFSDE 97 (291)
Q Consensus 79 ~~~~~~~~~~i~~v~~~dE 97 (291)
.- -+.+||+++++-++
T Consensus 168 ~~---yWsKDII~v~~d~~ 183 (617)
T KOG3566|consen 168 WV---YWSKDIIFVFTDGP 183 (617)
T ss_pred Ce---eecccEEEEEeCCc
Confidence 54 47899999998773
No 87
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=66.89 E-value=59 Score=32.39 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 022852 61 DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (291)
Q Consensus 61 D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~ 99 (291)
|| +|-++.|++++++.+.+ ++.+|..+.-..|--
T Consensus 322 DM-gGAAaVlga~~AiA~Lk----lpvnVv~iiplaENm 355 (569)
T PTZ00412 322 DM-MGAATVMCTLKAIAKLQ----LPVNVVAAVGLAENA 355 (569)
T ss_pred cc-hhHHHHHHHHHHHHHcC----CCeEEEEEEEhhhcC
Confidence 44 56677888999998874 567888777777764
No 88
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=66.07 E-value=20 Score=33.79 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=43.2
Q ss_pred HHHHcCCeEEEcc---ccc-EEEE--EeCCCCCCCEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 022852 15 WMEDAGLRTWVDH---LGN-VHGR--VEGLNASAQALLIGSHLDTVVDAGIFDGSLGIITAISALKVLKSTGKLGKLKRP 88 (291)
Q Consensus 15 ~l~~~G~~v~~d~---~gn-v~a~--~~g~~~~~~~l~l~sH~DtV~~~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~ 88 (291)
.|++--++|.+|. -|+ -++. ++|. ..+.|+|.+|+.+ +.-+.|.-+|++.++..++.|++.. .+.+
T Consensus 98 ~L~dg~Y~V~IdS~l~~G~L~ygE~~ipG~--s~~EillsthiCH--PsmANdnLSG~~v~~~La~~L~~~~----~ryt 169 (386)
T PF09940_consen 98 ALPDGEYEVVIDSTLEDGSLTYGEFVIPGE--SDEEILLSTHICH--PSMANDNLSGPAVLTFLAKWLKQLP----NRYT 169 (386)
T ss_dssp T--SSEEEEEEEEEEES-EEEEEEEEE--S--SS-EEEEEEE------S-TTTTHHHHHHHHHHHHHHTTS------SSE
T ss_pred hCCCCceEEEEeeeecCCceeEEEEEecCC--CCCeEEEEEeccC--cccccccccHHHHHHHHHHHHhcCC----cCce
Confidence 3443235565543 244 2333 4664 3578999999876 3457899999999999999998764 4589
Q ss_pred EEEEEec
Q 022852 89 VEVIAFS 95 (291)
Q Consensus 89 i~~v~~~ 95 (291)
.+|+|.|
T Consensus 170 YRflf~P 176 (386)
T PF09940_consen 170 YRFLFVP 176 (386)
T ss_dssp EEEEEE-
T ss_pred EEEEEcc
Confidence 9999999
No 89
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=55.73 E-value=94 Score=30.51 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCeEEEcc--------cccEEEEEeCCCCCCCEEEEcccCCC----CCCC-------CC---------
Q 022852 8 AGNLIRQWMEDAGLRTWVDH--------LGNVHGRVEGLNASAQALLIGSHLDT----VVDA-------GI--------- 59 (291)
Q Consensus 8 ~~~~i~~~l~~~G~~v~~d~--------~gnv~a~~~g~~~~~~~l~l~sH~Dt----V~~~-------g~--------- 59 (291)
.++++.+.+++.|+++++-. ++-+++.=+|+. ..|.++...+.-. +-.| |+
T Consensus 193 ~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~-~~prli~l~Y~g~~~~i~LVGKGITFDsGG~slKp~~~M 271 (483)
T PRK00913 193 LAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSA-NPPRLIVLEYKGGKKPIALVGKGLTFDSGGISLKPAAGM 271 (483)
T ss_pred HHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCC-CCCeEEEEEECCCCCeEEEEcCceEecCCCccCCCCcCh
Confidence 46677777788899887521 233666655543 2345544444311 1111 22
Q ss_pred ----CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 022852 60 ----FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (291)
Q Consensus 60 ----~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~ 99 (291)
.|| +|-++.+++++++.+.+ ++.+|..+.-..|--
T Consensus 272 ~~MK~DM-~GAAaVlga~~aia~lk----l~vnV~~v~~l~ENm 310 (483)
T PRK00913 272 DEMKYDM-GGAAAVLGTMRALAELK----LPVNVVGVVAACENM 310 (483)
T ss_pred hhccccc-HhHHHHHHHHHHHHHcC----CCceEEEEEEeeccC
Confidence 244 67778899999999874 678888888888765
No 90
>PRK02256 putative aminopeptidase 1; Provisional
Probab=52.50 E-value=21 Score=34.73 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=31.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 022852 56 DAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGV 100 (291)
Q Consensus 56 ~~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~ 100 (291)
.+.+.|+..++.+++.+++.+. .+...+.++++..||.|
T Consensus 255 ~s~rLDNr~~~~~~leal~~~~------~~~~~~~~~~~dqEEVG 293 (462)
T PRK02256 255 GAYGQDDRVCAYTSLEALLELE------NPEKTAVVLLVDKEEIG 293 (462)
T ss_pred eccccccHHHHHHHHHHHHhcc------cCCCeEEEEEEcccccC
Confidence 4567899999999998887653 24568899999999984
No 91
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=42.19 E-value=1.4e+02 Score=29.31 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCC
Q 022852 60 FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEG 99 (291)
Q Consensus 60 ~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~ 99 (291)
+|| +|-|+.++++.++.+.+ ++.+|+.+.-..|--
T Consensus 275 ~DM-gGAAaV~g~~~a~a~l~----l~vnv~~vl~~~ENm 309 (485)
T COG0260 275 YDM-GGAAAVLGAMRALAELK----LPVNVVGVLPAVENM 309 (485)
T ss_pred ccc-chHHHHHHHHHHHHHcC----CCceEEEEEeeeccC
Confidence 344 56677889999999884 567888887777764
No 92
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=35.47 E-value=99 Score=29.74 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=35.8
Q ss_pred CHhHHHHHHHHHHHHHHcCCeE-E-----Eccc---------c-cEEEEEeCCC--CCCCEEEEcccCCCC
Q 022852 2 SPASVRAGNLIRQWMEDAGLRT-W-----VDHL---------G-NVHGRVEGLN--ASAQALLIGSHLDTV 54 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v-~-----~d~~---------g-nv~a~~~g~~--~~~~~l~l~sH~DtV 54 (291)
|+.++.++.+++++|.+.||.- + .+.. + +++|.+-|.+ +..+--++.+|+|.=
T Consensus 20 spTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaHtDSP 90 (437)
T COG1362 20 SPTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAHTDSP 90 (437)
T ss_pred CCChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEeecCCC
Confidence 5678999999999999999842 1 1111 2 3666654543 334566788999973
No 93
>PRK02813 putative aminopeptidase 2; Provisional
Probab=35.44 E-value=92 Score=30.02 Aligned_cols=53 Identities=26% Similarity=0.311 Sum_probs=34.8
Q ss_pred CHhHHHHHHHHHHHHHHcCCeE-EE-c----cc---------c-cEEEEEeCCCCC--CCEEEEcccCCCC
Q 022852 2 SPASVRAGNLIRQWMEDAGLRT-WV-D----HL---------G-NVHGRVEGLNAS--AQALLIGSHLDTV 54 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v-~~-d----~~---------g-nv~a~~~g~~~~--~~~l~l~sH~DtV 54 (291)
|+.++.+.++++++|++.||.- .. + .. + .++|..-|..+. ..--++.+|+|..
T Consensus 18 s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP 88 (428)
T PRK02813 18 SPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSP 88 (428)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCC
Confidence 4678899999999999999952 11 1 11 1 256655454431 2356788999975
No 94
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=33.55 E-value=2.6e+02 Score=27.62 Aligned_cols=88 Identities=15% Similarity=0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCeEEEcc--------cccEEEEEeCCCCCCCEEEEcccCCCCCC--------------CCCC----
Q 022852 7 RAGNLIRQWMEDAGLRTWVDH--------LGNVHGRVEGLNASAQALLIGSHLDTVVD--------------AGIF---- 60 (291)
Q Consensus 7 ~~~~~i~~~l~~~G~~v~~d~--------~gnv~a~~~g~~~~~~~l~l~sH~DtV~~--------------~g~~---- 60 (291)
..++++.+++...|+.+++.. .+-+++.-+++. ..|.++..+|..+-+. .|+.
T Consensus 210 ~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~-~pP~ll~lsY~g~~~~~~~i~lvGKGvtfDsGGl~iK~ 288 (513)
T KOG2597|consen 210 QFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASC-EPPRLLELSYKGTSGADKTILLVGKGVTFDSGGLSIKP 288 (513)
T ss_pred HHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccC-CCCEEEEEEEcCCCCCcceEEEEecceEEecCcccccc
Confidence 356788888999998765421 222444444432 2355555555554322 1332
Q ss_pred ---------CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 022852 61 ---------DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGV 100 (291)
Q Consensus 61 ---------D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~ 100 (291)
|| +|-|+.+++++++.+.+ ++-++.+++--.|-..
T Consensus 289 ~~~M~~mr~dm-~GAA~v~~~~~a~~~l~----~~in~~~v~plcENm~ 332 (513)
T KOG2597|consen 289 KTGMDGMRRDM-GGAAVVLGAFRAAAQLS----LPINVHAVLPLCENMP 332 (513)
T ss_pred CCChhhhhhhc-cccHHHHHHHHHHHhcC----CCCceEEEEeeeccCC
Confidence 33 55667788888888875 4578888887777753
No 95
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=32.80 E-value=1.1e+02 Score=29.88 Aligned_cols=51 Identities=12% Similarity=0.262 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEccc-----------------ccEEEEEeCCC---CCCCEEEEcccCCC
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHL-----------------GNVHGRVEGLN---ASAQALLIGSHLDT 53 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~-----------------gnv~a~~~g~~---~~~~~l~l~sH~Dt 53 (291)
|+.++.+.++++++|++.|| ++.++. ..++|..-|.+ ....--++.+|.|.
T Consensus 19 s~t~~hav~~~~~~L~~~GF-~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDs 89 (465)
T PTZ00371 19 TGSPFHAVQELKERLKKSGF-KQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDS 89 (465)
T ss_pred CCCHHHHHHHHHHHHHHCcC-EEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccC
No 96
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=31.64 E-value=1.7e+02 Score=25.79 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=37.6
Q ss_pred EEEEcccCCCCCCCCCCCc--HHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 022852 44 ALLIGSHLDTVVDAGIFDG--SLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (291)
Q Consensus 44 ~l~l~sH~DtV~~~g~~D~--~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE 98 (291)
.|.+.||+|.+|..+.+.. ..+.+=|..+++.|.+.+. .+...+.+....|-+
T Consensus 165 ~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~g~--~~~~~~~~~G~gd~~ 219 (244)
T COG1360 165 NIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLINGGL--VEAKRLSVVGYADTR 219 (244)
T ss_pred eEEEEeCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHcCC--CCcceEEEEeccccc
Confidence 8999999999997655433 4566667888899988764 345566666655544
No 97
>PRK02813 putative aminopeptidase 2; Provisional
Probab=31.26 E-value=48 Score=31.98 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=29.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCCCc
Q 022852 56 DAGIFDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEEGV 100 (291)
Q Consensus 56 ~~g~~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE~~ 100 (291)
.+.+.|+..++.+++.+++.+. . +.++.++++..||.+
T Consensus 229 ~s~~lDnr~~~~~~l~al~~~~------~-~~~~~~~~~d~EEVG 266 (428)
T PRK02813 229 SSGRLDNLSSCHAGLEALLAAA------S-DATNVLAAFDHEEVG 266 (428)
T ss_pred EEecchhHHHHHHHHHHHHhcC------C-CCeEEEEEEecCccC
Confidence 3567899999998888886543 2 467899999999984
No 98
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=1.4e+02 Score=29.56 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=53.4
Q ss_pred cEEEEEeC-----C-CCCCCEEEEcccCCCCCC----CCCCC-cHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 022852 30 NVHGRVEG-----L-NASAQALLIGSHLDTVVD----AGIFD-GSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (291)
Q Consensus 30 nv~a~~~g-----~-~~~~~~l~l~sH~DtV~~----~g~~D-~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE 98 (291)
|+|..++. + .+..+.++...-||+--- .++.+ --.++.+.|+++++|++......++++|.|+|..+|-
T Consensus 159 nvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~get 238 (596)
T KOG2657|consen 159 NVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFNGET 238 (596)
T ss_pred cceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEeecce
Confidence 57766542 1 122566777788887531 23334 5678888899999998765434688999999999988
Q ss_pred CcccCCCcccchhh
Q 022852 99 GVRFQSTFLGSAAL 112 (291)
Q Consensus 99 ~~~~~~~~~Gs~~~ 112 (291)
... +||..+
T Consensus 239 ~~y-----lgS~r~ 247 (596)
T KOG2657|consen 239 LDY-----LGSGRA 247 (596)
T ss_pred eee-----ccchhh
Confidence 744 577744
No 99
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=30.34 E-value=99 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.6
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEccccc
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDHLGN 30 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~~gn 30 (291)
+.||..++.||.+.+++.|+++..-...+
T Consensus 10 ~~ED~~t~~yL~~~a~qaG~~~~~~~i~~ 38 (97)
T PF03738_consen 10 YPEDRGTVQYLMDTARQAGLDTRFIPIED 38 (97)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEEETTTT
T ss_pred ChHHHHHHHHHHHHHHHCCCCeEEechHh
Confidence 46899999999999999999977555444
No 100
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=25.79 E-value=2.5e+02 Score=24.82 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=38.0
Q ss_pred CEEEEcccCCCCCCC--CC--CCcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 022852 43 QALLIGSHLDTVVDA--GI--FDGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (291)
Q Consensus 43 ~~l~l~sH~DtV~~~--g~--~D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE 98 (291)
..|.+.||.|..|.. +. ++-..+..=|..++++|.+.+. .....|.+....+..
T Consensus 160 ~~i~I~GhTD~~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~g~--~~~~ri~~~G~G~~~ 217 (252)
T PRK06667 160 RNFRIEGHTDNVDVNPEGPWKSNWELSGARAVNMLEYILNYGD--QSESWFQVSGFAGSR 217 (252)
T ss_pred ceEEEEEeCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCC--CCcceEEEEEECCCC
Confidence 468999999998754 32 3345666667888999998875 445667777666444
No 101
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.56 E-value=2.2e+02 Score=19.56 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCeEEEcccccEEEEEeCCCCC
Q 022852 9 GNLIRQWMEDAGLRTWVDHLGNVHGRVEGLNAS 41 (291)
Q Consensus 9 ~~~i~~~l~~~G~~v~~d~~gnv~a~~~g~~~~ 41 (291)
.+.+.+.|+++||++....-.++..+.+..|.+
T Consensus 21 ~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~D 53 (70)
T PF03484_consen 21 PEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFD 53 (70)
T ss_dssp HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT
T ss_pred HHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCC
Confidence 467888999999998765444466676666543
No 102
>PRK06778 hypothetical protein; Validated
Probab=24.24 E-value=1.4e+02 Score=27.09 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=35.0
Q ss_pred CEEEEcccCCCCCCC-CCCCc-HHHHHHHHHHHHHHHHcCCCCCCCCCE-EEEEecC
Q 022852 43 QALLIGSHLDTVVDA-GIFDG-SLGIITAISALKVLKSTGKLGKLKRPV-EVIAFSD 96 (291)
Q Consensus 43 ~~l~l~sH~DtV~~~-g~~D~-~~gv~a~l~a~~~L~~~~~~~~~~~~i-~~v~~~d 96 (291)
..|.+.||.|.+|.. +.++. ..+.+=|..++++|.+.++ .+ ..| .+.+..+
T Consensus 183 ~~I~V~GHTD~~p~~~~~~sNweLS~~RA~~V~~~L~~~Gv--~~-~ri~~v~G~g~ 236 (289)
T PRK06778 183 NKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGM--PE-DKVMQVSAMAD 236 (289)
T ss_pred CcEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC--CH-HHeeeeeeccC
Confidence 468899999999864 33443 5677777889999998886 44 444 3444443
No 103
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=23.29 E-value=96 Score=29.97 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=30.2
Q ss_pred CHhHHHHHHHHHHHHHHcCCeEEEcc-------c----------ccEEEEEeCCC--CCCCEEEEcccCCCC
Q 022852 2 SPASVRAGNLIRQWMEDAGLRTWVDH-------L----------GNVHGRVEGLN--ASAQALLIGSHLDTV 54 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v~~d~-------~----------gnv~a~~~g~~--~~~~~l~l~sH~DtV 54 (291)
|+.++.+.++++++|++.||.- .++ . ..++|..-|.+ ....--++.+|.|.=
T Consensus 5 spT~~Hav~~~~~~L~~~GF~e-L~e~~~W~l~~ggkyy~~r~~ssliAF~vg~~~~~~~G~~ivgaHtDSP 75 (432)
T PF02127_consen 5 SPTPFHAVANAKERLEKAGFTE-LDETEKWDLKPGGKYYVTRNGSSLIAFAVGGKFPPGNGFRIVGAHTDSP 75 (432)
T ss_dssp TSSHHHHHHHHHHHHHHTTHEE-STTTSSTT--TTSEEEEEETTTEEEEEEEETTS-GCG-EEEEEEE---S
T ss_pred CCCHHHHHHHHHHHHHHcCCeE-cccccccCCCCCCEEEEEeCCCEEEEEEeCCcCCcccceEEEEEecCCC
Confidence 5668899999999999999852 111 1 12555443332 122345778999973
No 104
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=22.65 E-value=2.3e+02 Score=22.21 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=35.8
Q ss_pred CEEEEcccCCCCCCC-CCC--CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCC
Q 022852 43 QALLIGSHLDTVVDA-GIF--DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDE 97 (291)
Q Consensus 43 ~~l~l~sH~DtV~~~-g~~--D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dE 97 (291)
..|.+.||.|..+.. +.+ ....+..=|..+..+|.+.++ ....|.+....+.
T Consensus 61 ~~i~I~GhTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi---~~~ri~~~g~G~~ 115 (137)
T TIGR03350 61 GRITVVGHTDNVPIRTSRFPSNWHLSEARAKAVADVLAQGGV---PAGRVRAEGRGDS 115 (137)
T ss_pred CeEEEEEecCCCCCccCCcccHHHHHHHHHHHHHHHHHHcCC---CHHHEEEEEECCC
Confidence 579999999998753 222 456677777888899988886 3445665554433
No 105
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=22.59 E-value=2.2e+02 Score=27.45 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=37.7
Q ss_pred CEEEEcccCCCCCCC-CC--C-CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 022852 43 QALLIGSHLDTVVDA-GI--F-DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (291)
Q Consensus 43 ~~l~l~sH~DtV~~~-g~--~-D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE 98 (291)
..|.+.||.|.+|.. |. + +-..+..=+..+.++|.+.++ ...+-+.+++..+..
T Consensus 187 n~I~I~GHTD~~P~~~g~~~~SNWeLSaaRA~aV~r~Li~~Gv--~~~ril~v~G~Gd~~ 244 (421)
T PRK12799 187 NKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGL--DEGKILRVVGMASTM 244 (421)
T ss_pred CcEEEEEEcCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHcCC--CcccEEEEEEeCCCC
Confidence 358899999999874 32 2 234566666888899998887 544445777777654
No 106
>PRK02256 putative aminopeptidase 1; Provisional
Probab=21.30 E-value=2.6e+02 Score=27.34 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=33.7
Q ss_pred CHhHHHHHHHHHHHHHHcCCeE-E-Ecc-----------cc-cEEEEEeCCCC-CCCEEEEcccCCCC
Q 022852 2 SPASVRAGNLIRQWMEDAGLRT-W-VDH-----------LG-NVHGRVEGLNA-SAQALLIGSHLDTV 54 (291)
Q Consensus 2 s~~E~~~~~~i~~~l~~~G~~v-~-~d~-----------~g-nv~a~~~g~~~-~~~~l~l~sH~DtV 54 (291)
|+.++.+.+++++.|++.||.- . .+. .+ .++|..-|... ...--++.+|.|.=
T Consensus 38 sptp~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP 105 (462)
T PRK02256 38 CKTEREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSP 105 (462)
T ss_pred CCCHHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCC
Confidence 4567889999999999999952 1 111 01 25665545443 12345788999974
No 107
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=21.24 E-value=2e+02 Score=26.51 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=37.1
Q ss_pred CEEEEcccCCCCCCCC-C-C--CcHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEecCCC
Q 022852 43 QALLIGSHLDTVVDAG-I-F--DGSLGIITAISALKVLKSTGKLGKLKRPVEVIAFSDEE 98 (291)
Q Consensus 43 ~~l~l~sH~DtV~~~g-~-~--D~~~gv~a~l~a~~~L~~~~~~~~~~~~i~~v~~~dEE 98 (291)
..|.+.||.|.+|... . + +-..+.+=+..+.++|.+.++ .+.+-+.+.+..+..
T Consensus 192 ~~I~I~GHTD~~p~~~g~~~~sNweLS~aRA~aV~~~L~~~Gi--~~~ri~~~~G~gd~~ 249 (317)
T PRK09041 192 NRISLSGHTDATPYANGEKGYSNWELSADRANASRRELVAGGM--DEGKVLRVVGLASTM 249 (317)
T ss_pred CeEEEEEecCCCcccCCCccccHHHHHHHHHHHHHHHHHHcCC--ChhHeEEEEEeCCCC
Confidence 4689999999998643 2 2 346777777889999998887 444323566655443
No 108
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.16 E-value=2.2e+02 Score=21.69 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHcCCe-EEEccccc-EEEEEeCCCCCCCEEEEcc
Q 022852 3 PASVRAGNLIRQWMEDAGLR-TWVDHLGN-VHGRVEGLNASAQALLIGS 49 (291)
Q Consensus 3 ~~E~~~~~~i~~~l~~~G~~-v~~d~~gn-v~a~~~g~~~~~~~l~l~s 49 (291)
.++..+.+||.+.+.+.|+. +++....| +...+... .|.++++-
T Consensus 33 ~ed~~IR~yL~k~~~~agis~I~I~R~~~~i~I~I~t~---rPg~vIG~ 78 (109)
T cd02412 33 HEDLKIRKFIKKKLKKAGISRIEIERKADRVEVTIHTA---RPGIIIGK 78 (109)
T ss_pred HhHHHHHHHHHHHHhhCCccEEEEEEcCCCEEEEEEeC---CCCcccCC
Confidence 36788999999999999985 44444344 44444332 35676654
No 109
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=21.00 E-value=2.1e+02 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=21.2
Q ss_pred CCHhHHHHHHHHHHHHHHcCCeEEEc
Q 022852 1 MSPASVRAGNLIRQWMEDAGLRTWVD 26 (291)
Q Consensus 1 ~s~~E~~~~~~i~~~l~~~G~~v~~d 26 (291)
+|..|.....-..+.|+++||+++..
T Consensus 61 l~~~e~~~l~~~~~~l~~~Gf~~~~~ 86 (136)
T smart00853 61 LSPEEAALLEEHQELLARLGFELEIF 86 (136)
T ss_pred cCHHHHHHHHHHHHHHHHcCeEEEcc
Confidence 46778888888899999999998743
No 110
>PRK06156 hypothetical protein; Provisional
Probab=20.17 E-value=94 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.4
Q ss_pred eEEEEEEeecCCCcccccCceeEEEee
Q 022852 253 VCTVGEISSWPSASNVIPGEARNLSLD 279 (291)
Q Consensus 253 ~~~vg~i~~G~~~~NvIP~~a~~~~~D 279 (291)
...+..++|| ...|+||+.|. +.+.
T Consensus 240 ~~~l~~~~gG-~~~n~ip~~a~-~~~~ 264 (520)
T PRK06156 240 GAEIVAMTGG-AFANQIPQTAV-ATLS 264 (520)
T ss_pred ceeEEEEEcC-CcCCCCCCccE-EEEe
Confidence 4567788898 99999999998 7643
No 111
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=20.15 E-value=99 Score=28.09 Aligned_cols=28 Identities=29% Similarity=0.145 Sum_probs=21.3
Q ss_pred EEEEEEeecCCCcccccCceeEEEeecceee
Q 022852 254 CTVGEISSWPSASNVIPGEARNLSLDDGYFL 284 (291)
Q Consensus 254 ~~vg~i~~G~~~~NvIP~~a~~~~~D~r~~~ 284 (291)
+++..++-| -... ||-.|. +.+|+|++|
T Consensus 165 ~~i~~~SFg-~k~g-~p~dad-~vfDvR~lp 192 (288)
T PRK05416 165 LTVTVESFG-FKYG-IPLDAD-LVFDVRFLP 192 (288)
T ss_pred eEEEEEeec-ccCC-CCCCCC-EEEEeCcCC
Confidence 556566666 4444 799999 999999987
Done!