Query 022854
Match_columns 291
No_of_seqs 230 out of 1696
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02883 Branched-chain amino 100.0 3.6E-65 7.8E-70 490.5 27.7 278 12-289 2-281 (384)
2 PLN02259 branched-chain-amino- 100.0 1.4E-63 3.1E-68 480.2 25.8 281 7-289 1-285 (388)
3 KOG0975 Branched chain aminotr 100.0 2.5E-63 5.5E-68 464.9 20.8 236 52-288 36-271 (379)
4 PLN02782 Branched-chain amino 100.0 5.3E-61 1.2E-65 464.3 27.4 237 53-289 62-299 (403)
5 PLN03117 Branched-chain-amino- 100.0 1.4E-51 3E-56 393.6 28.1 237 52-289 11-248 (355)
6 PRK13357 branched-chain amino 100.0 6.6E-48 1.4E-52 368.4 28.4 240 50-289 6-246 (356)
7 TIGR01123 ilvE_II branched-cha 100.0 3.7E-40 8.1E-45 309.6 23.0 204 86-289 1-206 (313)
8 TIGR01122 ilvE_I branched-chai 100.0 2.8E-37 6.2E-42 288.0 22.5 194 86-290 1-200 (298)
9 PRK07544 branched-chain amino 100.0 8.7E-37 1.9E-41 284.1 21.6 191 85-290 11-206 (292)
10 PRK06606 branched-chain amino 100.0 1.5E-36 3.3E-41 284.3 23.3 195 85-290 9-208 (306)
11 cd01557 BCAT_beta_family BCAT_ 100.0 4.5E-36 9.7E-41 277.9 23.6 191 98-290 1-191 (279)
12 PRK12479 branched-chain amino 100.0 5.3E-36 1.2E-40 279.9 22.3 190 85-290 6-200 (299)
13 COG0115 IlvE Branched-chain am 100.0 1.2E-35 2.6E-40 275.7 22.6 191 85-289 4-198 (284)
14 PRK08320 branched-chain amino 100.0 1.4E-35 3.1E-40 275.2 22.8 190 85-290 5-199 (288)
15 PRK13356 aminotransferase; Pro 100.0 5.4E-35 1.2E-39 271.3 23.2 189 85-290 9-201 (286)
16 cd01558 D-AAT_like D-Alanine a 100.0 1.6E-34 3.5E-39 265.3 21.9 185 86-289 1-189 (270)
17 PLN02845 Branched-chain-amino- 100.0 6E-34 1.3E-38 270.4 22.8 187 85-289 43-233 (336)
18 PRK07650 4-amino-4-deoxychoris 100.0 1.1E-33 2.4E-38 262.1 22.3 187 85-290 2-192 (283)
19 PRK06680 D-amino acid aminotra 100.0 1.9E-33 4E-38 261.1 23.4 185 85-289 5-196 (286)
20 TIGR03461 pabC_Proteo aminodeo 100.0 2.5E-33 5.3E-38 256.5 22.1 182 86-289 1-185 (261)
21 PRK07849 4-amino-4-deoxychoris 100.0 3.5E-33 7.5E-38 260.3 22.8 188 85-290 9-207 (292)
22 TIGR01121 D_amino_aminoT D-ami 100.0 7.4E-33 1.6E-37 255.8 22.5 186 85-290 2-191 (276)
23 PRK12400 D-amino acid aminotra 100.0 1.2E-32 2.6E-37 256.2 22.8 191 81-290 3-198 (290)
24 PRK06092 4-amino-4-deoxychoris 100.0 1.3E-32 2.7E-37 252.9 22.3 184 85-290 2-188 (268)
25 cd01559 ADCL_like ADCL_like: 4 100.0 1.8E-32 4E-37 249.3 21.0 169 103-289 1-171 (249)
26 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 2E-31 4.4E-36 242.2 22.3 171 103-289 1-175 (256)
27 PRK09266 hypothetical protein; 100.0 4.8E-31 1E-35 242.4 22.0 176 85-289 5-181 (266)
28 PRK07546 hypothetical protein; 99.9 2.9E-22 6.2E-27 178.3 18.8 151 110-290 4-154 (209)
29 PF01063 Aminotran_4: Aminotra 99.8 8.6E-20 1.9E-24 163.0 17.3 147 129-290 1-154 (231)
30 PRK07101 hypothetical protein; 99.7 2.3E-16 4.9E-21 138.5 16.7 136 110-289 3-140 (187)
31 COG5475 Uncharacterized small 30.1 47 0.001 23.7 2.2 23 73-95 27-55 (60)
32 KOG3442 Uncharacterized conser 29.9 1.1E+02 0.0024 25.4 4.6 45 138-186 58-103 (132)
33 COG1255 Uncharacterized protei 24.6 1.2E+02 0.0025 25.2 3.8 53 114-184 51-104 (129)
34 PRK13740 conjugal transfer pro 22.5 58 0.0013 24.2 1.6 9 129-137 43-51 (70)
35 PF03656 Pam16: Pam16; InterP 22.2 58 0.0013 27.0 1.7 39 138-180 57-96 (127)
36 PF07075 DUF1343: Protein of u 21.3 69 0.0015 31.3 2.3 63 98-185 200-263 (365)
37 PF12651 RHH_3: Ribbon-helix-h 21.1 2.6E+02 0.0056 18.5 4.9 36 128-165 7-42 (44)
38 PF01402 RHH_1: Ribbon-helix-h 20.4 2.3E+02 0.0049 17.5 4.2 33 130-164 6-38 (39)
No 1
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=3.6e-65 Score=490.50 Aligned_cols=278 Identities=60% Similarity=0.997 Sum_probs=255.7
Q ss_pred HHHh-hhhhhcccccccccCcccccchhhhhcccccCCCCCCCCCCccCCCCCCCCCCCcccCCceeEEEeec-ceEEcC
Q 022854 12 CLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKG 89 (291)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~ng 89 (291)
.||+ |.|++.++|+++..+.+.++.+++..++...+.......++...++||++|+||+++||||++++|.+ +.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~ 81 (384)
T PLN02883 2 ALRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG 81 (384)
T ss_pred chhhhccccccchhhhhccccceeccccccccchhhhcccccccccccccCCchhcCcCCeecCceEEEEEcCCCcccCC
Confidence 3566 78999999999999999999888766654333333346677778999999999999999999999876 489999
Q ss_pred eeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 022854 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 169 (291)
Q Consensus 90 ~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~ 169 (291)
+|+|+++++++|++++|||||+||||||+|+++||++++||+++|++||++||++|+||.++.++|.++|+++|+.|+.|
T Consensus 82 ~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~w 161 (384)
T PLN02883 82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW 161 (384)
T ss_pred eEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHH
Q 022854 170 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLK 249 (291)
Q Consensus 170 vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~ 249 (291)
||+.+++++||||+++++++.+|+.++.+++++|+++|+++||++|.+++++.+++.++|++|++++++|++|||+++++
T Consensus 162 vp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~ll 241 (384)
T PLN02883 162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLE 241 (384)
T ss_pred CCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHH
Confidence 99988789999999999988899998889999999999999998888899999987789999999999999999999999
Q ss_pred HHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 250 AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 250 a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
++++|+++||||+||||..++|+|+|++++|||+|+++++
T Consensus 242 a~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l 281 (384)
T PLN02883 242 VMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNII 281 (384)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEE
Confidence 9999999999999999987668999999999999999875
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=1.4e-63 Score=480.23 Aligned_cols=281 Identities=67% Similarity=1.147 Sum_probs=254.2
Q ss_pred HHH-HHHHHh-hhhhhcccccccccCcccccchhhhhccccc-CCCCCCCCCCccCCCCCCCCCCCcccCCceeEEEeec
Q 022854 7 MIR-NACLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQD-CEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN 83 (291)
Q Consensus 7 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~ 83 (291)
||+ ..+||+ |+..++++ . ..++.+.++.+++..++... ........++...++||++|+||+++||||++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~td~m~~~~~~~ 78 (388)
T PLN02259 1 MIKTITSLRKTLVLPLHLH-I-RTLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFGLNPADYMYVMKCSK 78 (388)
T ss_pred CccchhhhhhheEeeeehh-h-hhhhhhhhhccccccccchhhccccccccccccccCCccccCCCCcccCceEEEEECC
Confidence 667 788999 88888876 3 67788888888776665332 2223345667778999999999999999999999965
Q ss_pred -ceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 022854 84 -DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162 (291)
Q Consensus 84 -~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~l 162 (291)
+.|.||+++|++++.+++.|++||||||||||||+|+.+||++++||+++|++||++||++|+||.++.++|.++|+++
T Consensus 79 ~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~l 158 (388)
T PLN02259 79 DGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQT 158 (388)
T ss_pred CCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCccc
Q 022854 163 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242 (291)
Q Consensus 163 v~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~g 242 (291)
++.|+.|||+.+.+++||||+++|+++.+|+.|+.+++++|+++|+++||+.|++++++.+++++.|++|++++++|++|
T Consensus 159 v~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~ 238 (388)
T PLN02259 159 ALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSIT 238 (388)
T ss_pred HHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhh
Confidence 99999999998878999999999988889999888899999999999999888888999887779999999999999988
Q ss_pred ChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 243 NY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+++++++++|+++||||+||||..++|+|+|+++||||+|+++++
T Consensus 239 NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l 285 (388)
T PLN02259 239 NYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTI 285 (388)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEE
Confidence 99999999999999999999999986679999999999999999875
No 3
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-63 Score=464.90 Aligned_cols=236 Identities=55% Similarity=0.964 Sum_probs=228.1
Q ss_pred CCCCCccCCCCCCCCCCCcccCCceeEEEeecceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeCh
Q 022854 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~ 131 (291)
...+.+...+||++|+||.++||||++++|+.+.|..|+|.|++++.+||.+.+|||||++||||||||++||++++|||
T Consensus 36 ~~~~~k~~~~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrP 115 (379)
T KOG0975|consen 36 TQTDEKPAPIDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRP 115 (379)
T ss_pred ccCCCccCcCCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecc
Confidence 34566777899999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCc
Q 022854 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (291)
Q Consensus 132 d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y 211 (291)
+.|++||++||.|++||.|+.++|.++|++++.+|++|||+.++++|||||+++|+++.+|+.++.+++|+|+++|+++|
T Consensus 116 d~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~y 195 (379)
T KOG0975|consen 116 DQNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPY 195 (379)
T ss_pred hhhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCE
Q 022854 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLL 288 (291)
Q Consensus 212 ~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~ 288 (291)
|+.|+++|+|.+.+.++|++|+|+|+.|+++||+++++++.+|+++||+|+||||.++ ++|+|+++||||+|++|+
T Consensus 196 f~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d~-~~ItEv~tmNiF~v~~n~ 271 (379)
T KOG0975|consen 196 FKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGDG-GYITEVGTMNIFMVKKNE 271 (379)
T ss_pred ccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecCC-CceeeccceeEEEEEcCc
Confidence 9999999999999999999999999999999999999999999999999999999974 499999999999999886
No 4
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=5.3e-61 Score=464.35 Aligned_cols=237 Identities=72% Similarity=1.273 Sum_probs=223.6
Q ss_pred CCCCccCCCCCCCCCCCcccCCceeEEEeec-ceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeCh
Q 022854 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~ 131 (291)
...+...++||++|+||+++||||++++|++ +.|.||+|+|++++.+++.|++||||||||||||+|+++||++++|||
T Consensus 62 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~ 141 (403)
T PLN02782 62 TEVTELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRP 141 (403)
T ss_pred cCCcccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeCh
Confidence 3445567899999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCc
Q 022854 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (291)
Q Consensus 132 d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y 211 (291)
++|++||++||++|+||.++.|+|.++|+++++.|+.|||+.+.+++||||+++|+++.+|+.|+.+++++|+++|+++|
T Consensus 142 d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~ 221 (403)
T PLN02782 142 EENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY 221 (403)
T ss_pred HHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccc
Confidence 99999999999999999999999999999999999999999887899999999999888999988889999999999999
Q ss_pred ccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 212 ~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+.|.+|+++.++++++|++|++++++|++|||+++++++++|+++||||+||||..++|+|+|++++|||+|+++++
T Consensus 222 ~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l 299 (403)
T PLN02782 222 FKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVI 299 (403)
T ss_pred cccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEE
Confidence 988888999999877999999999999999999999999999999999999999975579999999999999999875
No 5
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=1.4e-51 Score=393.62 Aligned_cols=237 Identities=61% Similarity=1.145 Sum_probs=214.5
Q ss_pred CCCCCccCCCCCCCCCCCcccCCceeEEEeecc-eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeC
Q 022854 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFR 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~-~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr 130 (291)
+.......++||++|+||++|||||+..+|+++ +|.||+++|.+++.+++.|++|+||||||||||+|+..+|++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~ 90 (355)
T PLN03117 11 SKADEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFR 90 (355)
T ss_pred CCccccccccCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeC
Confidence 344555577999999999999999999999876 7999999999999999999999999999999999988899999999
Q ss_pred hhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCC
Q 022854 131 PDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (291)
Q Consensus 131 ~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~ 210 (291)
+++|++||++||++|+||.++.++|.++|.++++.|+.|+|+...+.+||||+++|+++.+|+.|..++.++|++.|.++
T Consensus 91 l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~ 170 (355)
T PLN03117 91 PDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGN 170 (355)
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccc
Confidence 99999999999999999998999999999999999999999876678999999988877788887777889999999877
Q ss_pred cccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 211 YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 211 y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
++.. .+++++.+++.++|+.+.+++++|+++||+.++++.++|+++||||+||||.+++|+|+|++++|||+|+||++
T Consensus 171 ~~~~-~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l 248 (355)
T PLN03117 171 YHKA-SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIV 248 (355)
T ss_pred cccC-CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEE
Confidence 6643 36889988656789888889999997799999999999999999999999975457999999999999999876
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=6.6e-48 Score=368.44 Aligned_cols=240 Identities=45% Similarity=0.825 Sum_probs=213.2
Q ss_pred CCCCCCCccCCCCCCCCCCCcccCCceeEEEeecceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEee
Q 022854 50 SAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLF 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lF 129 (291)
.|......+..+||++||||++.+|||++..|+++.|.||+++|.+++.+++.|++|+||||||||+|+|++.+|++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f 85 (356)
T PRK13357 6 KPNPTSDEKRAIDWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLF 85 (356)
T ss_pred CCCcccccccCCCccccCCCccccceeEEEEecCCcccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeee
Confidence 34455556677899999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred ChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCC-CCCceEEEEEEEEecCCCccccCCCCcEEEEEEeec
Q 022854 130 RPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208 (291)
Q Consensus 130 r~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~-~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~ 208 (291)
++++|++||.+||++|+|+.++.+.+.+++.++++.|+.++++ ..++.+|||++++++.+.+|+.+..++.++|++.|.
T Consensus 86 ~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~ 165 (356)
T PRK13357 86 RPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPV 165 (356)
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEec
Confidence 9999999999999999999779999999999999999876643 234589999999987777788766678999999988
Q ss_pred CCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCE
Q 022854 209 GNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLL 288 (291)
Q Consensus 209 ~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~ 288 (291)
++++..+.+++++.+...+.|..+..++++|+++||+.++++.++|+++||||+||||++++|+|+|++++|||+|++++
T Consensus 166 ~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~ 245 (356)
T PRK13357 166 GAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDG 245 (356)
T ss_pred hhhcccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCE
Confidence 77776666788888765688988888899999669999999999999999999999996446999999999999999887
Q ss_pred e
Q 022854 289 G 289 (291)
Q Consensus 289 ~ 289 (291)
.
T Consensus 246 l 246 (356)
T PRK13357 246 T 246 (356)
T ss_pred E
Confidence 4
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=3.7e-40 Score=309.60 Aligned_cols=204 Identities=50% Similarity=0.903 Sum_probs=179.5
Q ss_pred EEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 022854 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (291)
Q Consensus 86 w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~ 165 (291)
|.||+++|.+++.+++.|+||+||||||||||+|+..+|++++|++++|++||.+||++|+|+.++.+.+.+.+.++++.
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998778999999999999999999999999977999999999999999
Q ss_pred cCCCCCCC-CCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccCh
Q 022854 166 NKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 244 (291)
Q Consensus 166 n~~~vP~~-~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY 244 (291)
|+.++|+. .++.+|||++++++++.+|+++.+.+.++|++.|.++++..|.+++++.+...+.|..+..++++|+.+||
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~ny 160 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNY 160 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceecccc
Confidence 98876643 24578999999987777888876678899999988777766767777766456788888778999996699
Q ss_pred HHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEEC-CEe
Q 022854 245 APVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG-LLG 289 (291)
Q Consensus 245 ~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~-g~~ 289 (291)
+.++++.++|+++||||+|++|++.+|+|+|++++|||++++ |++
T Consensus 161 l~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l 206 (313)
T TIGR01123 161 AASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGEL 206 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEE
Confidence 999999999999999999999986334499999999999985 664
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.8e-37 Score=287.99 Aligned_cols=194 Identities=30% Similarity=0.465 Sum_probs=167.4
Q ss_pred EEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 022854 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (291)
Q Consensus 86 w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~ 164 (291)
|.||+++|.+++.+++.|++|+||||||||||+|++.||. ++|++++|++||.+||++|+|+.+ +.+++.+.|.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGP-AIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcc-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999544322 489999999999999999999976 89999999999999
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC--CcCEEEEEeccccccCCCC-CCCCC
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGVK 239 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G--~~pv~l~v~~~~~Ra~p~g-~g~~K 239 (291)
.|+. .++|||++++++.+.+|+.|. .+++++|++.|.+.++... .+++++.++ ++.|..+.. ++++|
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K 151 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAK 151 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccch
Confidence 9874 468999999877777888763 3678899999887654321 257889887 578877765 48999
Q ss_pred cccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 240 t~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
+.+||+.++++.++|+++|+||+||+|++ |+|+|++++|||+|++|++.
T Consensus 152 ~~~~yl~~v~a~~~a~~~g~de~l~ld~~--g~v~E~s~sNlf~v~~~~l~ 200 (298)
T TIGR01122 152 AGGNYLNSLLAKSEARRHGYDEAILLDVE--GYVAEGSGENIFIVKDGVLF 200 (298)
T ss_pred hhhhhHHHHHHHHHHHHcCCCEEEEECCC--CCEEECCceEEEEEECCEEE
Confidence 99669999999999999999999999975 99999999999999998763
No 9
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=8.7e-37 Score=284.10 Aligned_cols=191 Identities=24% Similarity=0.400 Sum_probs=164.3
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
.|.||+++|.+++.+++.|+||+||||||||+|+| +|+ +|++++|++||.+||++|+|+.+ +.+.+.+.+.+++
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 85 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETL 85 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 787 78899999999999999999987 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC-CCcEEEEEEeecCCccc--CCCcCEEEEEeccccccCCCC-CCCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFK--EGLAPLNLYVEDEFHRATPGG-AGGVK 239 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~-~~~~~~I~~~P~~~y~~--~G~~pv~l~v~~~~~Ra~p~g-~g~~K 239 (291)
+.|+. .+.|||++++++.+.+|+.+. ....++|...|.++++. .+.+++++.++ .++|..|.. .+.+|
T Consensus 86 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k 157 (292)
T PRK07544 86 AANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAK 157 (292)
T ss_pred HhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhh
Confidence 99874 467999999877766787654 34567777777655443 23468899887 477776654 45679
Q ss_pred cccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 240 t~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
++|||+.++++.++|+++|+||+||+|++ |+|+|++++|||+|+||++.
T Consensus 158 ~~~~yl~~vla~~~A~~~G~deal~ld~~--g~V~E~~~sNlf~v~~~~l~ 206 (292)
T PRK07544 158 AAGLYMICTISKHAAEAKGYADALMLDYR--GYVAEATGANIFFVKDGVIH 206 (292)
T ss_pred hhcccHHHHHHHHHHHHcCCCeEEEECCC--CCEEEcCceEEEEEECCEEE
Confidence 88899999999999999999999999975 99999999999999999864
No 10
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=1.5e-36 Score=284.31 Aligned_cols=195 Identities=29% Similarity=0.460 Sum_probs=169.2
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
.|.||+++|.+++.+++.|++|+||||||||+|++++++|+ ++|++++|++||.+||++|+|+.+ +.+.+.+.|.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 87 (306)
T PRK06606 9 IWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGP-AIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVV 87 (306)
T ss_pred EEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCC-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999776565 388999999999999999999987 7899999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC-CCcEEEEEEeecCCcccC-C-CcCEEEEEeccccccCCCC-CCCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKE-G-LAPLNLYVEDEFHRATPGG-AGGVK 239 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~-~~~~~~I~~~P~~~y~~~-G-~~pv~l~v~~~~~Ra~p~g-~g~~K 239 (291)
+.|+. ...|||++++++.+.+|+.|. ..+.++|++.|.++|+.. + .+++++.++ ++.|..+.. ++++|
T Consensus 88 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K 159 (306)
T PRK06606 88 RKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAK 159 (306)
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchh
Confidence 99874 468999999987777788765 467888999887765532 2 257888886 477776664 67899
Q ss_pred cccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 240 t~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
+++||+.++++.++|+++|+||+||+|++ |+|+|++++|||++++|++.
T Consensus 160 ~~~nyl~~vla~~ea~~~G~de~l~l~~~--g~v~E~~~sNlf~v~~~~l~ 208 (306)
T PRK06606 160 ASGNYLNSILAKTEARRNGYDEALLLDVE--GYVSEGSGENIFIVRDGVLY 208 (306)
T ss_pred hhhccHHHHHHHHHHHHcCCCEEEEECCC--CCEEEcCceEEEEEECCEEE
Confidence 87799999999999999999999999975 99999999999999998753
No 11
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=4.5e-36 Score=277.89 Aligned_cols=191 Identities=47% Similarity=0.815 Sum_probs=166.0
Q ss_pred ccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCce
Q 022854 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGS 177 (291)
Q Consensus 98 ~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~ 177 (291)
++++.|++|+||||||||+|+|+..||+.++|++++|++||.+||++|+|+.++.++|.+.+.++++.|+.|+|.....+
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 47899999999999999999996555656689999999999999999999956999999999999999999977666568
Q ss_pred EEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHC
Q 022854 178 LYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNR 257 (291)
Q Consensus 178 lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~ 257 (291)
.|||++++++.+.+|+.+..+++++|++.|.++++....+++++.++ ++.|..+..++.+|+++||+.++++.++|+++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 99999999877777887656788999999987766534467888887 57888886788899866999999999999999
Q ss_pred CCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 258 GFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 258 G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
|+||+|++|++ +|+|+|++++|||++++|++.
T Consensus 160 g~de~l~ld~~-~g~v~E~~~sNlf~v~~~~l~ 191 (279)
T cd01557 160 GYDQALWLDGA-HGYVAEVGTMNIFFVKDGELI 191 (279)
T ss_pred CCCEEEEEcCC-CCEEEEeCcEEEEEEECCEEE
Confidence 99999999973 399999999999999998763
No 12
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=5.3e-36 Score=279.91 Aligned_cols=190 Identities=25% Similarity=0.345 Sum_probs=163.1
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|.+++.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 80 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GGN--VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTL 80 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 887 78899999999999999999877 7999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCC-CCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGA-GGVK 239 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G-~~pv~l~v~~~~~Ra~p~g~-g~~K 239 (291)
+.++. ...|||++++++.+.+|+.|. .++.++|++.|...+.... .+++++.+. .+.|..+..+ ..+|
T Consensus 81 ~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~-~~~r~~~~~~~~~~K 152 (299)
T PRK12479 81 QKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVVSV-ASRRNTPDALDPRIK 152 (299)
T ss_pred HHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCCeEEEEE-eEeccCCCccCccch
Confidence 98764 467999999877677888764 4568888888875332111 145677776 4778776654 6899
Q ss_pred cccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 240 t~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
+. ||+.++++.++|+++|+||+||+|++ |+|+|++++|||++++|++.
T Consensus 153 ~~-nyl~~vla~~ea~~~g~de~l~ld~~--g~v~E~s~sNlf~v~~~~l~ 200 (299)
T PRK12479 153 SM-NYLNNVLVKIEAAQAGVLEALMLNQQ--GYVCEGSGDNVFVVKDGKVL 200 (299)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEEcCC--CcEEECCceEEEEEECCEEE
Confidence 97 99999999999999999999999975 99999999999999998763
No 13
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.2e-35 Score=275.69 Aligned_cols=191 Identities=36% Similarity=0.544 Sum_probs=162.5
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
.|.||+++|.+++.+++.++++|||++||||+|+| +|+ +||+++|++||++||++|+||.| +.+++......++
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~---~g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 78 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAY---NGK--LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLL 78 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEe---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 564 99999999999999999999998 6666666666666
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCC--cCEEEEEeccccccCCCCCCCCCcc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGL--APLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~--~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
+.++ |.+ .+|+||+++++++.+|+.+..++.+.|+++|+++|++.+. +++.+.+++ ..|..+.+++..|.+
T Consensus 79 ~~~~-~~~-----~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~k~ 151 (284)
T COG0115 79 AKNN-LVP-----GLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISS-PVRRAPPGPGAAKKT 151 (284)
T ss_pred HhhC-CCC-----ceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEee-hhhccCCCcchhhhh
Confidence 5554 332 3999999999988899988788999999999999998763 577777763 445555544444444
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEE-CCEe
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GLLG 289 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk-~g~~ 289 (291)
+||+.+++++++|+++|+||+|++|.+ |+|+|++++|||+++ ||+.
T Consensus 152 ~~y~~~~~a~~~A~~~G~~eal~~~~~--G~V~Eg~~sNvf~v~~dg~~ 198 (284)
T COG0115 152 GNYLSSVLAKREAKAAGADEALLLDED--GYVTEGAGSNVFFVKGDGVL 198 (284)
T ss_pred cccHHHHHHHHHHHHCCCCEEEEecCC--CeEEEcCcceEEEEEECCEE
Confidence 599999999999999999999999985 999999999999999 7764
No 14
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=275.16 Aligned_cols=190 Identities=27% Similarity=0.384 Sum_probs=162.1
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||++++..++.+++.|++|+|||||||||+++ +|+ +|++++|++||.+||++|+|+.+ +.+.+.+++.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 79 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NGR--VFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETL 79 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CCE--eecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 887 78899999999999999999877 7999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCC-CCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGA-GGVK 239 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G-~~pv~l~v~~~~~Ra~p~g~-g~~K 239 (291)
+.++. .+.+||++++++.+.+|+.|. .++.+++++.|..+++..- .+++++.+. .+.|..+..+ .++|
T Consensus 80 ~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K 151 (288)
T PRK08320 80 RKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVK 151 (288)
T ss_pred HhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccch
Confidence 99764 467999999877667888765 4667888888875443210 145667665 3667766554 6899
Q ss_pred cccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 240 t~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
+. ||+.++++.++|+++||||+||+|++ |+|+|++++|||++++|+..
T Consensus 152 ~~-nyl~~v~a~~~A~~~g~de~L~ld~~--g~v~E~s~sNlf~~~~~~l~ 199 (288)
T PRK08320 152 SL-NYLNNILAKIEANLAGVDEAIMLNDE--GYVAEGTGDNIFIVKNGKLI 199 (288)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEECCC--CeEEEcCcEEEEEEECCEEE
Confidence 97 99999999999999999999999975 99999999999999998763
No 15
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=5.4e-35 Score=271.33 Aligned_cols=189 Identities=22% Similarity=0.318 Sum_probs=155.8
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
.|.||++++.+.+.+++.|++|+||||||||+|+| +|+ +|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i 83 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EGV--TPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGL 83 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEe---cCC--CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 777 67899999999999999999865 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCc-cccCC-CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCC-CCCCCc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG-AGGVKA 240 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~l-Gv~p~-~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g-~g~~Kt 240 (291)
+.+.. ..++|||++++++.+.. |+.+. ..+.+.+.+.+.+.... +++++.++ ++.|..+.. .+++|+
T Consensus 84 ~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~gv~l~~~-~~~r~~~~~~~~~~K~ 153 (286)
T PRK13356 84 KRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEP---TGFSLTLS-PFRRPTLEMAPTDAKA 153 (286)
T ss_pred HHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCC---CcEEEEEe-eeecCCCCCCCcccee
Confidence 98763 23689999988664433 44443 23444555554432112 46888886 577876654 477898
Q ss_pred ccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 241 ~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
++||+.++++.++|+++|+||+||+|++ |+|+|++++|||+|++|++.
T Consensus 154 ~~nyl~~vla~~ea~~~g~deal~ld~~--G~v~E~~~sNlf~v~~~~l~ 201 (286)
T PRK13356 154 GCLYPNNARALREARSRGFDNALVLDML--GNVAETATSNVFMVKDGVVF 201 (286)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEECCC--CCEEEcCceEEEEEECCEEE
Confidence 8899999999999999999999999975 99999999999999998763
No 16
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=1.6e-34 Score=265.31 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=152.6
Q ss_pred EEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 022854 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (291)
Q Consensus 86 w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~ 164 (291)
|.||+++|..++.+++.|++|+||||||||||++ +|+ +|++++|++||.+||++|+|+.+ +.+.+.+.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NGK--PFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CCE--EecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999 787 78899999999999999999876 89999999999999
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCCCCCCcc
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G-~~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
.|+. ..+.+|+|+ ..|.+ .+|+.+. ..+.++|++.|.++++... .+++++.+.+ +.|. ..+++|+.
T Consensus 76 ~~~~-----~~~~~~~~~-t~g~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~ 144 (270)
T cd01558 76 KNEG-----GEGDVYIQV-TRGVG-PRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL 144 (270)
T ss_pred HcCC-----CCceEEEEE-EeCCC-ccCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh
Confidence 9863 235677775 34443 4565543 4567888888876432211 2467787763 4443 34689997
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+.++++.++|+++|+||+|++|++ |+|+|++++|||++++|+.
T Consensus 145 -ny~~~~~a~~~a~~~g~de~l~ld~~--g~v~E~~~sNif~~~~~~l 189 (270)
T cd01558 145 -NLLNNVLAKQEAKEAGADEAILLDAD--GLVTEGSSSNVFIVKNGVL 189 (270)
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEEcCC--CEEEEcCcEEEEEEECCEE
Confidence 99999999999999999999999975 9999999999999999875
No 17
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=6e-34 Score=270.40 Aligned_cols=187 Identities=19% Similarity=0.198 Sum_probs=156.6
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|.+++.+++.|++|+||||||||||++ +|+ +|++++|++||.+||++|+|+.+ +.+++.+.|.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G~--~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DGH--LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 887 78899999999999999999977 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
+.|+. .+.+||++++.+.+.+++.+. ..+++++++.|...+. ...+++++.+++ +.|. +..+.++|+.
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~gv~l~~~~-~~~~-~~~~~~~Kt~ 187 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQ-DRPEGVKVVTSS-VPIK-PPQFATVKSV 187 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEccccccc-cccCCeEEEEee-eeec-CCccccchhh
Confidence 99864 456888888765555566433 5678888887764222 113567887763 5553 3346789997
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEE-CCEe
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GLLG 289 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk-~g~~ 289 (291)
||+.++++.++|+++|+||+||+|++ |+|+|++++||||++ +|++
T Consensus 188 -nyl~~vla~~eA~~~G~deaLlln~~--G~V~Egt~sNiF~v~~~~~l 233 (336)
T PLN02845 188 -NYLPNALSQMEAEERGAFAGIWLDEE--GFVAEGPNMNVAFLTNDGEL 233 (336)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECCC--CcEEEcCcceEEEEEECCEE
Confidence 99999999999999999999999975 999999999999885 8875
No 18
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.1e-33 Score=262.08 Aligned_cols=187 Identities=21% Similarity=0.267 Sum_probs=158.0
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|..++.+++.|++|+||||+|||||+| +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999 887 67889999999999999999976 7999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcc-cCCCcCEEEEEeccccccCCCCCCCCCc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~-~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt 240 (291)
+.++. ...+||++++++.+.+|+.+. ..+.++|+..|..+.. .....++.+ .+.|..+..+.++|+
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Kt 145 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNTPEGAFRLKS 145 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecCCCCCcchhH
Confidence 98763 468999999876556677654 4678888888875322 112222322 355666777889999
Q ss_pred ccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 241 ~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
+ ||+.++++.++|+++|+||+|++|++ |+|+|++++|||++++|+..
T Consensus 146 ~-~y~~~v~a~~~a~~~g~de~llln~~--G~v~E~s~sNif~v~~g~l~ 192 (283)
T PRK07650 146 H-HYLNNILGKREIGNDPNKEGIFLTEE--GYVAEGIVSNLFWVKGDIVY 192 (283)
T ss_pred H-hHHHHHHHHHHHHHcCCCeEEEECCC--CeEEEcCceEEEEEECCEEE
Confidence 7 99999999999999999999999975 99999999999999998763
No 19
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.9e-33 Score=261.15 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=152.3
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|..++.+++.|++|+||||||||+|+| +|+ +|++++|++||.+||++|+|+.+ +.+.+.+.|.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~ 79 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DGK--LVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELI 79 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CCE--EechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999 887 67789999999999999999976 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCcccc-C--CCCcEEEEEEeecCCcc-cCC-CcCEEEEEeccccccCCCCCCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-P--APEYTFLVFASPVGNYF-KEG-LAPLNLYVEDEFHRATPGGAGGV 238 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~-p--~~~~~~~I~~~P~~~y~-~~G-~~pv~l~v~~~~~Ra~p~g~g~~ 238 (291)
+.|+. ...+||++++++.+..|+. | ..++.++|++.|.++|+ ... .+++++.+.+ ..| ....++
T Consensus 80 ~~~~~-------~~~~lr~~vtrG~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~-~~~---~~~~~~ 148 (286)
T PRK06680 80 RRNRV-------REGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVP-DNR---WKRCDI 148 (286)
T ss_pred HHcCC-------CceEEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEec-CCC---CCCCCc
Confidence 99864 3456666666544444554 3 24678999999886522 111 2467776653 223 235679
Q ss_pred CcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEE-ECCEe
Q 022854 239 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGLLG 289 (291)
Q Consensus 239 Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~v-k~g~~ 289 (291)
|+. ||+.++++.++|+++|+||+|++| + |+|+|++++|||++ ++|++
T Consensus 149 Ks~-nyl~~vla~~eA~~~g~dd~l~ld-~--g~v~E~~~sN~f~~~~~~~l 196 (286)
T PRK06680 149 KSV-GLLPNVLAKQAAKEAGAQEAWMVD-D--GFVTEGASSNAWIVTKDGKL 196 (286)
T ss_pred chh-ccHHHHHHHHHHHHCCCCEEEEec-C--CEEEEcCcEEEEEEEECCEE
Confidence 998 999999999999999999999999 6 99999999999999 88865
No 20
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=2.5e-33 Score=256.47 Aligned_cols=182 Identities=24% Similarity=0.283 Sum_probs=150.5
Q ss_pred EEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 022854 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (291)
Q Consensus 86 w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~ 165 (291)
|.||+. +..+++.|++|+||+|||||||++ +|+ +|++++|++||.+||+.|+|+.++.+++.+.+.++++.
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 788984 678999999999999999999998 887 67789999999999999999988899999999999987
Q ss_pred cCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCCCCCCccc
Q 022854 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242 (291)
Q Consensus 166 n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G-~~pv~l~v~~~~~Ra~p~g~g~~Kt~g 242 (291)
+. ..+||+.+..+.+..|+.+. ..+.++|++.|.++++... .+++++.+++ .++..+..+.++|+.
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~- 140 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL- 140 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-
Confidence 53 35677777654434455443 4567888888887555322 2577888864 444444467899998
Q ss_pred ChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 243 NY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+.++++.++|+++|+||+||+|++ |+|+|++++|||+++||+.
T Consensus 141 ~y~~~~~a~~~A~~~g~de~llln~~--g~v~E~s~sNif~~~~~~l 185 (261)
T TIGR03461 141 NRLEQVLIKAELENSEADEALVLDTD--GNVVECTAANIFWRKGNQV 185 (261)
T ss_pred ccHHHHHHHHHhhhcCCCEEEEECCC--CCEEEeccEEEEEEECCEE
Confidence 99999999999999999999999985 9999999999999999875
No 21
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=3.5e-33 Score=260.30 Aligned_cols=188 Identities=20% Similarity=0.188 Sum_probs=154.0
Q ss_pred eEEcC-----eeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 022854 85 YFEKG-----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (291)
Q Consensus 85 ~w~ng-----~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i 159 (291)
+|.|| +++|.+++.+++.|++|+||||||||||++ +|+ ++++++|++||.+||++|+|+.++.+.|.++|
T Consensus 9 ~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i 83 (292)
T PRK07849 9 VTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLPEPDLDRWRRAV 83 (292)
T ss_pred EEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 79999 999999999999999999999999999999 787 66779999999999999999998999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccC-CCcCEEEEEeccc-----cccCCC
Q 022854 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE-GLAPLNLYVEDEF-----HRATPG 233 (291)
Q Consensus 160 ~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~-G~~pv~l~v~~~~-----~Ra~p~ 233 (291)
.++++.+.. + ....+||+++..+.+.. ..+.++|.+.|..+.... ..+++++.+++.- .+..|.
T Consensus 84 ~~~v~~~~~---~--~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~ 153 (292)
T PRK07849 84 ELAIEEWRA---P--EDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPW 153 (292)
T ss_pred HHHHHHhcC---C--CCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcc
Confidence 999998631 0 13578898776543322 256788888887543211 2356778775311 122444
Q ss_pred CCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 234 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 234 g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
.+.++|++ ||+.++++.++|+++|+||+||+|.+ |+|+|++++|||+++||+..
T Consensus 154 ~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~~--G~v~E~s~~Nif~~~~g~l~ 207 (292)
T PRK07849 154 LLAGAKTL-SYAVNMAALRYAARRGADDVIFTSTD--GYVLEGPTSTVVIATDDRLL 207 (292)
T ss_pred cccccchh-hhHHHHHHHHHHHHcCCCEEEEEcCC--CcEEECCceEEEEEECCEEE
Confidence 57889997 99999999999999999999999986 99999999999999999864
No 22
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=7.4e-33 Score=255.79 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=147.3
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
.|.||+++|.+++.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.+ +.+.+.+.|.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g~--~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NGK--LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 787 78999999999999999999976 8999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCcccc-CC--CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-PA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~-p~--~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt 240 (291)
+.|+. ...+||+.+.++.+..|.. |. ..+.+++++.|.+..+..-.+++++.+..+ .|. ...++|+
T Consensus 77 ~~~~~-------~~~~irl~~~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~-~~~---~~~~~K~ 145 (276)
T TIGR01121 77 EKNNL-------NTGHVYFQVTRGVAPRNHQFPAGTVKPVITAYTKEVPRPEENLEKGVKAITVED-IRW---LRCDIKS 145 (276)
T ss_pred HhcCC-------CceEEEEEEEcCCCCcCCCCCCCCCCcEEEEEEecccCChhHHhcCeEEEEecC-CCc---cCCCcch
Confidence 99874 3456666665433234444 22 245667777765422111124566655432 232 3467999
Q ss_pred ccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 241 ~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
. ||+.++++.++|+++|+||+||++ + |+|+|++++|||++++|++.
T Consensus 146 ~-nyl~~vla~~eA~~~g~de~l~~~-~--g~v~E~~~sNif~v~~~~~~ 191 (276)
T TIGR01121 146 L-NLLGNVLAKQEAHEKGAYEAILHR-G--GTVTEGSSSNVYGIKDGVLY 191 (276)
T ss_pred h-hhHHHHHHHHHHHHcCCCEEEEec-C--CeEEecCceeEEEEECCEEE
Confidence 7 999999999999999999999995 3 89999999999999998753
No 23
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=256.20 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=148.3
Q ss_pred eecceEEcCeeeeCCC--cccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHH
Q 022854 81 CSNDYFEKGRLSRYGK--IELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFID 157 (291)
Q Consensus 81 ~~~~~w~ng~lvp~~~--~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~ 157 (291)
|..-+|.||+++|.++ ..+++.|++|+||||||||||++ +|+ +|++++|++||.+||++|+|+.| +.+++.+
T Consensus 3 ~~~~~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~ 77 (290)
T PRK12400 3 YERFVLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFSKAELIT 77 (290)
T ss_pred cccEEEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 3444899999999994 55999999999999999999999 787 66779999999999999999987 7899999
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCC
Q 022854 158 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGA 235 (291)
Q Consensus 158 ~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~ 235 (291)
.+.++++.|+. ....+||+.+.++.+..|+.++ ..+++++++.|.........+++++...+ .. +...
T Consensus 78 ~l~~~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~---~~~~ 147 (290)
T PRK12400 78 LLYKLIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEYGVRAISEP-DT---RWLR 147 (290)
T ss_pred HHHHHHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhcCcEEEECC-CC---CccC
Confidence 99999999862 1245677777755444565543 34566666665321111012456665432 11 2234
Q ss_pred CCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 236 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 236 g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
.++|+. ||+.++++.++|+++|+||+||+| + |+|+|++++|||+++||++.
T Consensus 148 ~~~Kt~-nyl~~vla~~ea~~~g~deaL~l~-~--g~v~E~t~sNif~v~~~~l~ 198 (290)
T PRK12400 148 CDIKSL-NLLPNILAATKAERKGCKEALFVR-N--GTVTEGSHSNFFLIKNGTLY 198 (290)
T ss_pred CCCccc-ccHHHHHHHHHHHHcCCCEEEEEc-C--CEEEEcCceEEEEEECCEEE
Confidence 678997 999999999999999999999996 3 99999999999999998763
No 24
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=1.3e-32 Score=252.86 Aligned_cols=184 Identities=22% Similarity=0.233 Sum_probs=149.1
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (291)
+|.||++ ...++++|++|+||||||||||++ +|+ +|++++|++||.+||++|+||.++.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 5889985 578999999999999999999998 887 6778999999999999999998877888888887773
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC-CcCEEEEEeccccccCCCCCCCCCcc
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G-~~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
.. ...+||+.++.+.+..|+.+. ..+.++|++.|.++++.+. .+++++.+++ ..+..+..+.++|+.
T Consensus 73 ~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 142 (268)
T PRK06092 73 EL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL 142 (268)
T ss_pred hC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh
Confidence 21 245778777765555666654 4568888888887554322 2578888864 444434457789997
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEec
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~~ 290 (291)
||+.++++.++|+++|+||+||+|++ |+|+|++++|||+++||+..
T Consensus 143 -ny~~~~~a~~~A~~~g~de~l~l~~~--g~v~E~s~sNif~v~~~~~~ 188 (268)
T PRK06092 143 -NRLEQVLIRAELEQTEADEALVLDSE--GWVIECCAANLFWRKGGVVY 188 (268)
T ss_pred -hhHHHHHHHHHHHhcCCCEEEEECCC--CCEEEccceEEEEEECCEEE
Confidence 99999999999999999999999975 99999999999999998753
No 25
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=1.8e-32 Score=249.27 Aligned_cols=169 Identities=27% Similarity=0.370 Sum_probs=143.9
Q ss_pred CccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEE
Q 022854 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (291)
Q Consensus 103 d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp 182 (291)
|++|+||||||||||+| +|+ +|++++|++||.+||++|+|++++.+.+.++|.++++.++. ...+||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DGR--LFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CCE--EccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 68999999999999999 887 67899999999999999999955999999999999999864 3579999
Q ss_pred EEEecCCCccccCC--CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCC
Q 022854 183 LLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFS 260 (291)
Q Consensus 183 ~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~d 260 (291)
+++.+.+..|+.+. .++.++|++.|.++ ....+++++.++ ++.|..+..++++|+. ||+.++++.++|+++|+|
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~gv~l~~~-~~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~d 144 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPP--AWRQDGVRLITC-PVRLGEQPLLAGLKHL-NYLENVLAKREARDRGAD 144 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCH--HHHhCCcEEEEc-ccccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCC
Confidence 88865544566543 56788888888653 112356788886 4777677789999996 999999999999999999
Q ss_pred EEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 261 DVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 261 d~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+||+|++ |+|+|++++|||++++|+.
T Consensus 145 e~l~l~~~--g~v~E~~~~Nif~~~~~~~ 171 (249)
T cd01559 145 EALFLDTD--GRVIEGTASNLFFVKDGEL 171 (249)
T ss_pred EEEEEcCC--CCEEEecceEEEEEECCEE
Confidence 99999975 9999999999999999875
No 26
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=2e-31 Score=242.22 Aligned_cols=171 Identities=39% Similarity=0.566 Sum_probs=145.2
Q ss_pred CccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHHHcCCCCCCCCCceEEEE
Q 022854 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-PSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (291)
Q Consensus 103 d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~-~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIR 181 (291)
|++|+|||||||||+++ +|+ +|++++|++||.+||+.|+|+. ++.+.+.+.+.++++.+.. ...+||
T Consensus 1 drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KGR--LFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---CcE--EEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 68999999999999998 887 7788999999999999999995 4999999999999998653 468999
Q ss_pred EEEEecCCCccccCC--CCcEEEEEEeecCCcccCCCcCEEEEEecccccc-CCCCCCCCCcccChHHHHHHHHHHHHCC
Q 022854 182 PLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVLKAISRAKNRG 258 (291)
Q Consensus 182 p~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra-~p~g~g~~Kt~gNY~~~l~a~~~A~~~G 258 (291)
++++++.+.+|+.+. .++.+++++.|.+++.....+++++.+++ ..|. .+..+.++|+. ||+.++++.++|+++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSP-DRRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEee-eEEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 999877666777543 67889999998876411223678888875 4443 45578999998 9999999999999999
Q ss_pred CCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 259 FSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 259 ~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
+||+|++|++ |+|+|++++|||++++|+.
T Consensus 147 ~de~llld~~--g~v~E~s~sNlf~~~~~~l 175 (256)
T cd00449 147 ADEALLLDDN--GYVTEGSASNVFIVKDGEL 175 (256)
T ss_pred CCEEEEECCC--CcEEEcCceEEEEEECCEE
Confidence 9999999986 9999999999999999875
No 27
>PRK09266 hypothetical protein; Provisional
Probab=99.98 E-value=4.8e-31 Score=242.43 Aligned_cols=176 Identities=19% Similarity=0.176 Sum_probs=145.4
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (291)
+|.||+++|..++. .+++|||||||||+++ +|+ +|++++|++||.+||++|+++.++.+.+.+.+.++++
T Consensus 5 ~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~ 74 (266)
T PRK09266 5 IELNGRPATAEDLA-----ALALANYGHFTSMQVR---DGR--VRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALA 74 (266)
T ss_pred EEECCEECCHHHhh-----hHhhccceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 79999999998876 4999999999999998 887 6778999999999999997765689999999999994
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCC-CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccC
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISN 243 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~-~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gN 243 (291)
. .. ...+||++++++.+.+|+.+. .+++++|++.|..++. .+++++.++ ++.|. ..++|+. |
T Consensus 75 ~-~~-------~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~---~~~v~l~~~-~~~r~----~~~~K~~-~ 137 (266)
T PRK09266 75 A-GP-------ADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGP---AGPLRLQSV-PYERE----LPHIKHV-G 137 (266)
T ss_pred c-CC-------CcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCC---CCCeEEEEE-Eeccc----CCCCCCC-C
Confidence 3 21 468999998865555665432 4677888888765433 256777776 35564 3579998 9
Q ss_pred hHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 244 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 244 Y~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+.++++.++|+++|+||+|++|++ |+|+|++++|||++++|+.
T Consensus 138 ~l~~vla~~~a~~~g~de~l~ln~~--g~v~E~~~sNlf~v~~~~l 181 (266)
T PRK09266 138 TFGQLHLRRLAQRAGFDDALFVDPD--GRVSEGATWNLGFWDGGAV 181 (266)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEcCC--CcEEEcCceEEEEEECCEE
Confidence 9999999999999999999999975 9999999999999999875
No 28
>PRK07546 hypothetical protein; Provisional
Probab=99.90 E-value=2.9e-22 Score=178.28 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=117.5
Q ss_pred CeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCC
Q 022854 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 189 (291)
Q Consensus 110 ~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~ 189 (291)
.++||||+++ ++|+ ++++++|++||.+||+.|++|.+ .+.+.+.+.++++.+. +..+||.++..++
T Consensus 4 ~~lfETi~~~--~~G~--~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~~g- 69 (209)
T PRK07546 4 FELIETLRWE--PGAG--FPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLARDG- 69 (209)
T ss_pred ccEEEEEEEe--CCCC--cccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcCCC-
Confidence 4799999986 2566 67789999999999999999974 6788899999887632 3578887665432
Q ss_pred CccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCC
Q 022854 190 ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVN 269 (291)
Q Consensus 190 ~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~ 269 (291)
.+++.+.|..+.... .+.++.+.+ ..+..+..+.++||. ||+.++++.++|+++|+||+|++|++
T Consensus 70 ----------~~~i~~~p~~~~~~~--~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~~- 134 (209)
T PRK07546 70 ----------RLTVETAPLPPLPPD--TVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNER- 134 (209)
T ss_pred ----------CEEEEEecCCCCCCC--CcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECCC-
Confidence 356777776532221 235666553 445555567789997 99999999999999999999999975
Q ss_pred CCeEEEeCCeEEEEEECCEec
Q 022854 270 KKNLEEVSSCNIFILKGLLGK 290 (291)
Q Consensus 270 ~g~V~E~s~sNiF~vk~g~~~ 290 (291)
|+|+|++++|||++++|+..
T Consensus 135 -G~v~E~s~~Ni~~~~~~~~~ 154 (209)
T PRK07546 135 -GEVCEGTITNVFLDRGGGML 154 (209)
T ss_pred -CcEEEcCceeEEEEECCEEE
Confidence 99999999999999998753
No 29
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=99.84 E-value=8.6e-20 Score=162.96 Aligned_cols=147 Identities=26% Similarity=0.277 Sum_probs=105.5
Q ss_pred eChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEee
Q 022854 129 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207 (291)
Q Consensus 129 Fr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P 207 (291)
|++++|++||.+||+.+ +..+ +.+.+.+.+.++++.+.. .+..|||++++++++..+..+............
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 68999999999999999 5444 889999999999999872 145699999998877676665543332222211
Q ss_pred cCCcccCCCcCEEEEEeccccccCCC-----CCCCCCcccChHHHHH-HHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEE
Q 022854 208 VGNYFKEGLAPLNLYVEDEFHRATPG-----GAGGVKAISNYAPVLK-AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 281 (291)
Q Consensus 208 ~~~y~~~G~~pv~l~v~~~~~Ra~p~-----g~g~~Kt~gNY~~~l~-a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNi 281 (291)
..... +..........+..+. .++++|++ ||..+++ +.++|+++|+||+|++|++ |+|+|++++||
T Consensus 74 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~~--G~v~E~~~sNi 145 (231)
T PF01063_consen 74 PPRRP-----PPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDED--GNVTEGSTSNI 145 (231)
T ss_dssp TCHHH-----HEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEETT--SBEEEESSSEE
T ss_pred ccccC-----CcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecCC--CCcCCCCCccc
Confidence 11111 1111111123333333 38899998 8888888 7777779999999999986 99999999999
Q ss_pred EEEECCEec
Q 022854 282 FILKGLLGK 290 (291)
Q Consensus 282 F~vk~g~~~ 290 (291)
|+++||+..
T Consensus 146 f~~~~~~~~ 154 (231)
T PF01063_consen 146 FFVKDGTLY 154 (231)
T ss_dssp EEEETTEEE
T ss_pred ccccCCEEE
Confidence 999999763
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.72 E-value=2.3e-16 Score=138.55 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=94.7
Q ss_pred CeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCC-C-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEec
Q 022854 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187 (291)
Q Consensus 110 ~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~-~-~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~ 187 (291)
.++||||+++ +|+ ++++++|++||.+||+.+++.. + +.+.+.+.+.++ . .+..++|++. +.
T Consensus 3 ~~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~-~~ 65 (187)
T PRK07101 3 FPLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY-NA 65 (187)
T ss_pred CcceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe-cC
Confidence 3699999998 887 7788999999999999998855 3 777777777554 1 1457888655 44
Q ss_pred CCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcC
Q 022854 188 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267 (291)
Q Consensus 188 ~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~ 267 (291)
+ .+++ ...|..+.. .+++++..+++ ...++|+. |+. .+....|++.|+||+|++|
T Consensus 66 g-~~~~----------~~~~~~~~~---~~~~~~~~~~~-------~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~- 120 (187)
T PRK07101 66 E-IYQV----------QYFPYQRRP---IRSFQPVYCDD-------IDYSLKYT-DRS--ALNELFAQKGECDEIIIIK- 120 (187)
T ss_pred C-cEEE----------EEEcCCCCC---cCceEEEecCC-------cccccccC-CHH--HHHHHHHHhCCCCEEEEEc-
Confidence 3 2222 223332211 23455543322 23378998 653 3445556779999999998
Q ss_pred CCCCeEEEeCCeEEEEEECCEe
Q 022854 268 VNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 268 ~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
+ |+|+|++++|||++++|+.
T Consensus 121 ~--G~v~E~~~sNi~~~~~~~~ 140 (187)
T PRK07101 121 N--GLVTDTSIGNLAFFDGKQW 140 (187)
T ss_pred C--CEEEEccceEEEEEECCEE
Confidence 3 9999999999999999875
No 31
>COG5475 Uncharacterized small protein [Function unknown]
Probab=30.06 E-value=47 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.0
Q ss_pred CCceeEEEeecc------eEEcCeeeeCC
Q 022854 73 ADYMYTMKCSND------YFEKGRLSRYG 95 (291)
Q Consensus 73 td~m~~~~~~~~------~w~ng~lvp~~ 95 (291)
+|.|+.+.|-+| .+...+|+|..
T Consensus 27 s~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~ 55 (60)
T COG5475 27 SDGMYECRWFDGYGVKREAFHEDELVPGE 55 (60)
T ss_pred cCCeEEEEEecCCCcccccccccceeccc
Confidence 578999999876 36667777654
No 32
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.90 E-value=1.1e+02 Score=25.39 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEe
Q 022854 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVG 186 (291)
Q Consensus 138 L~~Sa~~L~mp~~-~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g 186 (291)
|..++..|++..+ ..+++..--..|.+.|.. ..++++||.--++.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdk----skGGSFYLQSKVfR 103 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDK----SKGGSFYLQSKVFR 103 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCc----ccCcceeehHHHHH
Confidence 6788999999977 999999999999998864 24579999754443
No 33
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.57 E-value=1.2e+02 Score=25.17 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=33.5
Q ss_pred EEEEEEEecCCeEEeeChhhHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEE
Q 022854 114 EGMKAYRKEDGQLVLFRPDQNAIRLQTGAERM-CMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLL 184 (291)
Q Consensus 114 Eglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L-~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~ 184 (291)
||++++++. +|.|..-+ .+.|+.+ .|.+ .-++...|.++.++-+ ..+||+|+.
T Consensus 51 ~g~~~v~DD-----itnP~~~i---Y~~A~lIYSiRp--ppEl~~~ildva~aVg--------a~l~I~pL~ 104 (129)
T COG1255 51 EGLRFVVDD-----ITNPNISI---YEGADLIYSIRP--PPELQSAILDVAKAVG--------APLYIKPLT 104 (129)
T ss_pred ccceEEEcc-----CCCccHHH---hhCccceeecCC--CHHHHHHHHHHHHhhC--------CCEEEEecC
Confidence 888888754 77665443 3444443 4443 3456677777777655 579999754
No 34
>PRK13740 conjugal transfer protein TraY; Provisional
Probab=22.55 E-value=58 Score=24.24 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=4.7
Q ss_pred eChhhHHHH
Q 022854 129 FRPDQNAIR 137 (291)
Q Consensus 129 Fr~d~H~~R 137 (291)
+|+.+|+.|
T Consensus 43 lRL~DHL~r 51 (70)
T PRK13740 43 IRLRDHLKR 51 (70)
T ss_pred HHHHHHHHh
Confidence 355555555
No 35
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=22.24 E-value=58 Score=27.00 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEE
Q 022854 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYI 180 (291)
Q Consensus 138 L~~Sa~~L~mp~~-~~e~~~~~i~~lv~~n~~~vP~~~~~~lyI 180 (291)
|..++..|+++.. +.|++.+--+.|.+.|.. . .+|+.||
T Consensus 57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~---~-kGGSfYL 96 (127)
T PF03656_consen 57 LDEARQILNVKEELSREEIQKRYKHLFKANDP---S-KGGSFYL 96 (127)
T ss_dssp HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C---C-CTS-HHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhccCC---C-cCCCHHH
Confidence 4677889999984 999999999999999973 2 3567776
No 36
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.28 E-value=69 Score=31.27 Aligned_cols=63 Identities=24% Similarity=0.335 Sum_probs=44.6
Q ss_pred ccCcCCccccc-cCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCc
Q 022854 98 ELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG 176 (291)
Q Consensus 98 ~l~~~d~~l~Y-G~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~ 176 (291)
.++-.+.++.| |.++||+..+-.+. |.-+.| +.+|-|..+.+.+.+.++++ +. .
T Consensus 200 Nlpt~~sa~lYpg~~l~EgtnlSeGR-GTt~PF-------------e~iGAP~id~~~la~~ln~~----~l-------~ 254 (365)
T PF07075_consen 200 NLPTLESALLYPGTCLFEGTNLSEGR-GTTRPF-------------EIIGAPWIDPERLAAELNAL----KL-------P 254 (365)
T ss_pred CCCChhHHhhccceeEeccccccccc-CCCccc-------------eeeCCCCCCHHHHHHHHHhc----cC-------C
Confidence 47778889999 99999998876332 555677 57888888877776665542 11 3
Q ss_pred eEEEEEEEE
Q 022854 177 SLYIRPLLV 185 (291)
Q Consensus 177 ~lyIRp~~~ 185 (291)
.++.||+.+
T Consensus 255 Gv~frp~~f 263 (365)
T PF07075_consen 255 GVRFRPVSF 263 (365)
T ss_pred CeeEeeeee
Confidence 467787776
No 37
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=21.11 E-value=2.6e+02 Score=18.48 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=29.7
Q ss_pred eeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 022854 128 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (291)
Q Consensus 128 lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~ 165 (291)
+.-+++-+++|..-++..++|. .+.+.++|..+++.
T Consensus 7 ~~l~~el~~~L~~ls~~t~i~~--S~Ll~eAle~~l~k 42 (44)
T PF12651_consen 7 FSLDKELYEKLKELSEETGIPK--SKLLREALEDYLEK 42 (44)
T ss_pred EecCHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHh
Confidence 4456888999999999999985 47788899988864
No 38
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.37 E-value=2.3e+02 Score=17.54 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 022854 130 RPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (291)
Q Consensus 130 r~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (291)
-+++-.++|..-|+..+++. .+.+.++|.+.++
T Consensus 6 l~~~~~~~l~~~a~~~g~s~--s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSR--SELIREAIREYLE 38 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSH--HHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHh
Confidence 36888999999999999764 4667777777664
Done!