Query 022854
Match_columns 291
No_of_seqs 230 out of 1696
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 5E-63 1.7E-67 473.3 24.2 238 50-287 17-256 (372)
2 3uzo_A Branched-chain-amino-ac 100.0 1.9E-60 6.6E-65 453.6 22.8 234 54-288 17-252 (358)
3 3dtg_A Branched-chain amino ac 100.0 1.4E-59 4.7E-64 449.9 24.0 247 39-285 6-254 (372)
4 4dqn_A Putative branched-chain 100.0 1.2E-58 4.2E-63 439.3 27.7 231 59-289 7-239 (345)
5 2coi_A Branched chain aminotra 100.0 9.4E-58 3.2E-62 439.0 28.3 232 55-287 36-272 (386)
6 2a1h_A Branched chain aminotra 100.0 1.8E-55 6.2E-60 420.4 29.2 231 56-288 17-253 (365)
7 3u0g_A Putative branched-chain 100.0 1.8E-43 6.1E-48 333.2 22.3 199 81-289 26-230 (328)
8 2eiy_A ILVE, branched-chain am 100.0 5.4E-40 1.9E-44 306.1 24.4 194 85-289 8-207 (308)
9 1iye_A Branched-chain amino ac 100.0 9.2E-40 3.2E-44 304.5 24.3 194 85-289 9-208 (309)
10 3daa_A D-amino acid aminotrans 100.0 8.4E-38 2.9E-42 287.9 23.0 185 85-289 3-191 (277)
11 3lul_A 4-amino-4-deoxychorisma 100.0 1E-36 3.5E-41 279.9 23.9 180 85-289 6-188 (272)
12 1i2k_A 4-amino-4-deoxychorisma 100.0 7.1E-37 2.4E-41 279.8 21.2 183 85-289 2-187 (269)
13 2xpf_A 4-amino-4-deoxychorisma 100.0 3.7E-36 1.3E-40 278.8 19.6 182 85-289 24-208 (292)
14 3sno_A Hypothetical aminotrans 100.0 3.6E-36 1.2E-40 282.0 18.2 188 85-289 17-232 (315)
15 2zgi_A Putative 4-amino-4-deox 100.0 3.9E-33 1.3E-37 252.3 16.9 171 85-289 2-173 (246)
16 3csw_A BCAT, putative branched 100.0 1.4E-31 4.8E-36 247.2 15.1 171 86-289 18-190 (285)
17 3qqm_A MLR3007 protein; struct 100.0 5E-28 1.7E-32 215.9 17.6 152 108-289 14-166 (221)
18 3ceb_A D-aminoacid aminotransf 99.9 4E-26 1.4E-30 199.1 13.8 142 107-289 2-147 (194)
19 2cpg_A REPA protein, transcrip 21.2 1.3E+02 0.0044 18.2 4.0 37 128-166 7-43 (45)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=5e-63 Score=473.28 Aligned_cols=238 Identities=38% Similarity=0.741 Sum_probs=223.4
Q ss_pred CCCCCCCccCCCCCCCCCCCcccCCceeEEEeecc-eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEe
Q 022854 50 SAYSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVL 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~-~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~l 128 (291)
.+.+..+...++||++|+||+++||||++++|+++ +|.||+++|++++.|++.|++|||||+||||||+|+++||++++
T Consensus 17 ~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~l 96 (372)
T 3dth_A 17 NTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVS 96 (372)
T ss_dssp CSSCCCHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEE
T ss_pred cCCCCCchhcccchhccCCCCccCCceEEEEEcCCCeEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCCCcEee
Confidence 33444445567899999999999999999999994 89999999999999999999999999999999999999999999
Q ss_pred eChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCC-CCceEEEEEEEEecCCCccccCCCCcEEEEEEee
Q 022854 129 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207 (291)
Q Consensus 129 Fr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~-~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P 207 (291)
|||++|++||++||++|+||.+|.++|.++|+++|+.|+.|||+. .++++||||+++++++.+|+.|+.+++++|+++|
T Consensus 97 Frl~~H~~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p 176 (372)
T 3dth_A 97 FRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASP 176 (372)
T ss_dssp ESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEee
Confidence 999999999999999999997799999999999999999999997 4579999999999988899999889999999999
Q ss_pred cCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECC
Q 022854 208 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGL 287 (291)
Q Consensus 208 ~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g 287 (291)
+++||+.|.+||++.++++|.|++|++++++|++|||+++++|+++|+++||||+||||..++|+|+|++++|||+++++
T Consensus 177 ~~~y~~~g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~ 256 (372)
T 3dth_A 177 AGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGS 256 (372)
T ss_dssp ESCSSSCSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESC
T ss_pred CchhhccCCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEEECC
Confidence 99999989999999998779999999999999988999999999999999999999999866799999999999999987
No 2
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=1.9e-60 Score=453.63 Aligned_cols=234 Identities=42% Similarity=0.747 Sum_probs=215.7
Q ss_pred CCCccCCCCCCCCCCCcccCCceeEEEeecceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhh
Q 022854 54 DDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQ 133 (291)
Q Consensus 54 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~ 133 (291)
..++.+++||++|+||++|||||++++|++|.|.||+++|++++.|++.|++||||||||||||+|+++||++++|||++
T Consensus 17 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~ 96 (358)
T 3uzo_A 17 QAKKLADIDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQ 96 (358)
T ss_dssp -------CCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHH
T ss_pred ccccccCCCcccCCCCCcccCeeEEEEEeCCcEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCC-CceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcc
Q 022854 134 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF 212 (291)
Q Consensus 134 H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~-~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~ 212 (291)
|++||++||++|+||.++.++|.++|+++++.|+.|||+.+ ++++||||+++++++.+|+.|+.++.++|++.|+++||
T Consensus 97 Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~~~ 176 (358)
T 3uzo_A 97 NAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYF 176 (358)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChhhh
Confidence 99999999999999977999999999999999999999864 46899999999998889999888899999999999999
Q ss_pred cCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEE-CCE
Q 022854 213 KEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GLL 288 (291)
Q Consensus 213 ~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk-~g~ 288 (291)
+.|.+|+++.+++ ++|+.|++++++|+++||+++++++++|+++||||+||||.+++|+|+|++++|||+++ ||+
T Consensus 177 ~~g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~ 252 (358)
T 3uzo_A 177 KGGLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQ 252 (358)
T ss_dssp CSSSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSC
T ss_pred hcCCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCe
Confidence 9889999999974 89999999999998779999999999999999999999998767999999999999995 665
No 3
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=1.4e-59 Score=449.86 Aligned_cols=247 Identities=36% Similarity=0.710 Sum_probs=221.4
Q ss_pred hhhcccccCCCCCCCCCCccCCCCCCCCCCCcccCCceeEEEeec-ceEEcCeeeeCCCcccCcCCccccccCeEEEEEE
Q 022854 39 AAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMK 117 (291)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglk 117 (291)
.++++++.+.+++.+.+....+--++|||||++|||||++++|+. ++|.||+|+|+++++|||.+++|||||+||||||
T Consensus 6 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~fg~~~tdhm~~~~~~~~~gW~ng~ivp~~~~~i~p~~~~lhYG~gvFEgir 85 (372)
T 3dtg_A 6 NSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLK 85 (372)
T ss_dssp ----CCCEECCCSSCCCHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEE
T ss_pred CCcceEEEEeCCCCCCCcchhhhHhhccCCCCCccceeEEEEECCCCcEeCCEEEEchhceeCcchhhhhccceeeeeEE
Confidence 334445555554433332222222689999999999999999985 4899999999999999999999999999999999
Q ss_pred EEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCC-ceEEEEEEEEecCCCccccCC
Q 022854 118 AYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLYIRPLLVGSGPILGLAPA 196 (291)
Q Consensus 118 ay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~-~~lyIRp~~~g~~~~lGv~p~ 196 (291)
+|+++||++++|||++|++||++||++|+||.++.|.+.++++++++.+..|||+..+ .++||||+++++++.+|+.|+
T Consensus 86 aY~~~dG~i~~Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~ 165 (372)
T 3dtg_A 86 AYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPS 165 (372)
T ss_dssp EEECTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCC
T ss_pred EEECCCCeEEeeCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCC
Confidence 9999999999999999999999999999999989999999999999999999998765 699999999999999999999
Q ss_pred CCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEe
Q 022854 197 PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEV 276 (291)
Q Consensus 197 ~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~ 276 (291)
.++.++|+++|+++|+..|.+++.+.++.++.|++|++++.+|++|||+++++++++|+++||||+||||..++|+|+|+
T Consensus 166 ~~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~ 245 (372)
T 3dtg_A 166 NEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEM 245 (372)
T ss_dssp SEEEEEEEEEEESCSSTTSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEE
T ss_pred CCceeeeEecccccccccCcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeec
Confidence 99999999999999999898899898888899999999999999999999999999999999999999998778999999
Q ss_pred CCeEEEEEE
Q 022854 277 SSCNIFILK 285 (291)
Q Consensus 277 s~sNiF~vk 285 (291)
+++|||+|+
T Consensus 246 ~~sNiF~V~ 254 (372)
T 3dtg_A 246 GGMNLFFVF 254 (372)
T ss_dssp TTEEEEEEE
T ss_pred CceEEEEEE
Confidence 999999994
No 4
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-58 Score=439.33 Aligned_cols=231 Identities=46% Similarity=0.797 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCcccCCceeEEEeecceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHH
Q 022854 59 DHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRL 138 (291)
Q Consensus 59 ~~~~~~~l~fg~~~td~m~~~~~~~~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL 138 (291)
+++||++|+||+++||||++++|++|.|.||+++|.+++.|++.|++||||||||||||+|+++||++++|||++|++||
T Consensus 7 ~~~~~~~l~fg~~~td~m~~~~~~~~~w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL 86 (345)
T 4dqn_A 7 VDLDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERL 86 (345)
T ss_dssp CCCCGGGCCSCCCCCSCEEEEEEETTEECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHH
T ss_pred CCCCchhcCCCCcccCceEEEEecCCcEECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCC-CceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCc
Q 022854 139 QTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA 217 (291)
Q Consensus 139 ~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~-~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~ 217 (291)
++||++|+||.++.++|.++|.++++.|+.|||+.+ ++++||||+++++++.+|+.|+.+++++|++.|+++|++.+.+
T Consensus 87 ~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~~ 166 (345)
T 4dqn_A 87 QRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLA 166 (345)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSCC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCCC
Confidence 999999999966999999999999999999999864 4589999999998888999988889999999999999987788
Q ss_pred CEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEE-ECCEe
Q 022854 218 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGLLG 289 (291)
Q Consensus 218 pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~v-k~g~~ 289 (291)
|+++.++++++|+.|++++++|+++||+++++|+++|+++||||+||||.+++|+|+|++++|||++ +||++
T Consensus 167 gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l 239 (345)
T 4dqn_A 167 PTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEF 239 (345)
T ss_dssp CEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEE
T ss_pred CEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEE
Confidence 9999998668999999999999966999999999999999999999999865699999999999998 78865
No 5
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=9.4e-58 Score=439.03 Aligned_cols=232 Identities=32% Similarity=0.562 Sum_probs=212.9
Q ss_pred CCccCCCCCCCCCCCcccCCceeEEEeecc-eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhh
Q 022854 55 DESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQ 133 (291)
Q Consensus 55 ~~~~~~~~~~~l~fg~~~td~m~~~~~~~~-~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~ 133 (291)
+.++.++||++|+||++|||||+.++|+++ +|.||+++|++++.|++.|++|||||+||||||+|+++||+|++|||++
T Consensus 36 ~~~~~~~~~~~~~fg~~~td~m~~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~ 115 (386)
T 2coi_A 36 TILKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNL 115 (386)
T ss_dssp SSCCCCCCCC-CCTTCCCCSEEEEEEEETTTEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHH
T ss_pred CCcccCCCccccCCccccccceEEEEeCCCcEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHH
Confidence 345667899999999999999999999887 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCccc
Q 022854 134 NAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK 213 (291)
Q Consensus 134 H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~ 213 (291)
|++||++||++|+||.++.++|.++|+++++.|+.|+|+..+.++||||+++|+++.+|+.|+.+++++|+++|+++||+
T Consensus 116 H~~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~ 195 (386)
T 2coi_A 116 NMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFS 195 (386)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC-
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECccccc
Confidence 99999999999999966999999999999999999999866679999999999888899999889999999999999998
Q ss_pred CC-CcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEE---CC
Q 022854 214 EG-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK---GL 287 (291)
Q Consensus 214 ~G-~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk---~g 287 (291)
.| .+|+++.+++++.|++|++++++|+++||+++++++++|+++||||+||||.. +|+|+|++++|||+++ ||
T Consensus 196 ~~~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~-~g~V~E~~~sNiF~v~~~~~g 272 (386)
T 2coi_A 196 SGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGE-DHQITEVGTMNLFLYWINEDG 272 (386)
T ss_dssp ----CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETT-TTEEEEETTEEEEEEEECTTS
T ss_pred ccccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECC-CCEEEEeCCceEEEEEEcCCC
Confidence 87 78999999877789999999999997799999999999999999999999942 4999999999999997 66
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=1.8e-55 Score=420.35 Aligned_cols=231 Identities=33% Similarity=0.589 Sum_probs=214.8
Q ss_pred CccCCCCC-CCCCCCcccCCceeEEEeecceEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhH
Q 022854 56 ESADHMDW-DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQN 134 (291)
Q Consensus 56 ~~~~~~~~-~~l~fg~~~td~m~~~~~~~~~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H 134 (291)
.++.++|| ++|+||++|||||+.++|++.+|.||+++|++++.|++.|++|||||+||||||+|+++||++++|||++|
T Consensus 17 ~~~~~~~~~~~l~fg~~~~d~m~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~H 96 (365)
T 2a1h_A 17 KPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLN 96 (365)
T ss_dssp SCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHH
T ss_pred CccCCCccccccCcCCccccceeeeecccCeEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHH
Confidence 44556788 99999999999999999988779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccC
Q 022854 135 AIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKE 214 (291)
Q Consensus 135 ~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~ 214 (291)
++||++||++|+||.++.++|.++|.++++.|+.|+|+..+.++||||+++++++.+|+.|+.+++++|+++|+++|+..
T Consensus 97 l~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~ 176 (365)
T 2a1h_A 97 MDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPG 176 (365)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECcccccc
Confidence 99999999999999669999999999999999999997666689999999988888999988899999999999999988
Q ss_pred C-CcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEE-cCCCCCeEEEeCCeEEEEEE---CCE
Q 022854 215 G-LAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL-DSVNKKNLEEVSSCNIFILK---GLL 288 (291)
Q Consensus 215 G-~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~L-d~~~~g~V~E~s~sNiF~vk---~g~ 288 (291)
| .+|+++.+++++.|++|++++++|+++||+++++++++|+++||||+||| |. +|+|+|++++|||+++ ||+
T Consensus 177 g~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~--~G~V~E~~~sNif~v~~~~dg~ 253 (365)
T 2a1h_A 177 GSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGP--DHQLTEVGTMNIFVYWTHEDGV 253 (365)
T ss_dssp SSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETT--TTEEEEETTEEEEEEEECTTSC
T ss_pred ccccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECC--CCeEEEcCceEEEEEEecCCCc
Confidence 8 78999999876789999999999997799999999999999999999999 65 5999999999999997 664
No 7
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.8e-43 Score=333.18 Aligned_cols=199 Identities=25% Similarity=0.365 Sum_probs=176.1
Q ss_pred eecc-eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHH
Q 022854 81 CSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDA 158 (291)
Q Consensus 81 ~~~~-~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~ 158 (291)
++++ +|.||+++|++++.+++.|++|+||||||||||+|+++||++++|++++|++||++||++|+||.| +.++|.++
T Consensus 26 ~~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~ 105 (328)
T 3u0g_A 26 DRDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAA 105 (328)
T ss_dssp SCCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHH
T ss_pred cCCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 3444 799999999999999999999999999999999998888977799999999999999999999987 99999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCC-CCcEEEEEEeecCCcccCC--CcCEEEEEeccccccCCCC-
Q 022854 159 VKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG- 234 (291)
Q Consensus 159 i~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~-~~~~~~I~~~P~~~y~~~G--~~pv~l~v~~~~~Ra~p~g- 234 (291)
|.++++.|+. .++||||+++++.+.+|+.|. ..++++|++.|.++|+..+ .+|+++.++ ++.|..+++
T Consensus 106 i~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~R~~~~~~ 177 (328)
T 3u0g_A 106 QRDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTS-SFTRHHVNVS 177 (328)
T ss_dssp HHHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEEC-SSCCCCTTTS
T ss_pred HHHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEe-eeeecCCCCc
Confidence 9999999874 579999999987777898876 3688999999998877432 257999987 588998887
Q ss_pred CCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 235 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 235 ~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
++++|+++||++++++.++|+++|+||+||+|.+ |+|+|++++|||+++||+.
T Consensus 178 ~~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~~--g~v~E~~~sNif~v~~g~l 230 (328)
T 3u0g_A 178 MVRAKASGWYVNSILANQEATADGYDEALLLDVD--GYVSEGSGENFFLVNRGKL 230 (328)
T ss_dssp CTTSCBGGGHHHHHHHHHHHHHTTCSEEEEECTT--SCEEEESSSEEEEEETTEE
T ss_pred ccchhhhhhhHHHHHHHHHHHHCCCCEEEEECCC--CcEEEcCceeEEEEECCEE
Confidence 8999966699999999999999999999999975 9999999999999999875
No 8
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=5.4e-40 Score=306.10 Aligned_cols=194 Identities=26% Similarity=0.355 Sum_probs=169.1
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|.+++.+++.|++|+||||||||||+|++.+|. ++|++++|++||.+||++|+|+.+ +.+++.++|.+++
T Consensus 8 ~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 86 (308)
T 2eiy_A 8 IWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVV 86 (308)
T ss_dssp EEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999766665 699999999999999999999976 9999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC--CcCEEEEEeccccccCCCC-CCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGV 238 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G--~~pv~l~v~~~~~Ra~p~g-~g~~ 238 (291)
+.|+. .++|||++++++++.+|+.|. .+++++|.+.|+++|+..+ .+++++.++ ++.|..+++ ++++
T Consensus 87 ~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~ 158 (308)
T 2eiy_A 87 RRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITS-SWARFPANVMPGKA 158 (308)
T ss_dssp HHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEEC-SSCBCCTTTSCTTS
T ss_pred HhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEe-cceecCCCCcCcce
Confidence 99863 468999999987777888765 5789999999998877544 368999987 477888875 5899
Q ss_pred CcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 239 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 239 Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+++||+.++++.++|+++|+||+||+|.+ |+|+|++++|||+++||+.
T Consensus 159 Kt~~ny~~~~la~~~A~~~G~de~l~ld~~--G~V~Egs~sNif~v~~g~l 207 (308)
T 2eiy_A 159 KVGGNYVNSALAKMEAVAAGADEALLLDEE--GYVAEGSGENLFFVRDGVI 207 (308)
T ss_dssp CBGGGHHHHHHHHHHHHHTTCSEEEEEBTT--SSEEEESSCEEEEEETTEE
T ss_pred ehhhhHHHHHHHHHHHHHcCCCEEEEECCC--CeEEEcCceEEEEEECCEE
Confidence 999779999999999999999999999975 9999999999999999975
No 9
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=9.2e-40 Score=304.50 Aligned_cols=194 Identities=27% Similarity=0.445 Sum_probs=174.1
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|.+++.+++.|++|+||||||||||+|++++|+ ++|++++|++||.+||++|+|+.+ +.+++.+++.+++
T Consensus 9 ~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~ 87 (309)
T 1iye_A 9 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVI 87 (309)
T ss_dssp EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHH
T ss_pred EEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999877883 389999999999999999999976 9999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccCC--CcCEEEEEeccccccCCCC-CCCC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGG-AGGV 238 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~G--~~pv~l~v~~~~~Ra~p~g-~g~~ 238 (291)
+.|+. .++|||++++++.+.+|+.|+ .+++++|.+.|.++|+..+ .+++++.++ ++.|..+++ ++++
T Consensus 88 ~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~ 159 (309)
T 1iye_A 88 RKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVS-SWNRAAPNTIPTAA 159 (309)
T ss_dssp HHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEEC-SSCCCCTTTSCTTS
T ss_pred HhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEe-eeeccCCCCCCccc
Confidence 99863 579999999987777888865 4788999999998887654 367899987 478888876 5899
Q ss_pred CcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 239 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 239 Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+++||+.++++.++|+++|+||+||+|.+ |+|+|++++|||+++||+.
T Consensus 160 K~~~ny~~~~la~~~A~~~G~de~l~ld~~--G~V~Egs~sNif~v~~g~l 208 (309)
T 1iye_A 160 KAGGNYLSSLLVGSEARRHGYQEGIALDVN--GYISEGAGENLFEVKDGVL 208 (309)
T ss_dssp CBGGGHHHHHHHHHHHHHTTCSEEEEECTT--SBEEEETTBEEEEEETTEE
T ss_pred cchhhhHHHHHHHHHHHHcCCCEEEEECCC--CcEEEcCceEEEEEECCEE
Confidence 987799999999999999999999999975 9999999999999999875
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=8.4e-38 Score=287.92 Aligned_cols=185 Identities=16% Similarity=0.219 Sum_probs=154.3
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.||+++|.+++.+++.|++||||||||||||+| +|+ +|++++|++||.+||++|+||.+ +.++|.++|.+++
T Consensus 3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~---~g~--~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li 77 (277)
T 3daa_A 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELV 77 (277)
T ss_dssp EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 786 89999999999999999999976 9999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCcccc-C--CCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-P--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~-p--~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt 240 (291)
+.|+. .+.+||+.++.+.+.+|+. | ..+++++|++.|++++.....+++++.++++ .| ..++++|+
T Consensus 78 ~~n~~-------~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~-~r---~~~~~~Kt 146 (277)
T 3daa_A 78 EKNEL-------NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED-IR---WLRCDIKS 146 (277)
T ss_dssp HHHTC-------CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEEC-CC---CSCTTSCB
T ss_pred HhcCC-------CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecC-cc---ccCCCcch
Confidence 99874 2345555555333334544 3 3678999999999854321124678877643 33 24679998
Q ss_pred ccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 241 ~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
+ ||+++++++++|+++|+||+||+| + |+|+|++++|||+++||+.
T Consensus 147 ~-nyl~~~la~~eA~~~g~~e~l~l~-~--g~v~E~~~sNif~~~~~~l 191 (277)
T 3daa_A 147 L-NLLGAVLAKQEAHEKGCYEAILHR-N--NTVTEGSSSNVFGIKDGIL 191 (277)
T ss_dssp S-CCHHHHHHHHHHHHTTCSEEEEEE-T--TEEEEETTBEEEEEETTEE
T ss_pred h-hhHHHHHHHHHHHHCCCCEEEEEc-C--CEEEEcCceEEEEEECCEE
Confidence 6 999999999999999999999997 3 9999999999999999875
No 11
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=1e-36 Score=279.88 Aligned_cols=180 Identities=18% Similarity=0.217 Sum_probs=154.8
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv 163 (291)
+|.|| .+++.|++.|++||||||||||||+| +|+ +|++++|++||++||++|+||.| +.+++.++|.+++
T Consensus 6 ~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~ 76 (272)
T 3lul_A 6 VIEDK----GDMTPSFGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKI 76 (272)
T ss_dssp ECCCC----C--CCCCCTTBGGGGTCEEEEEEEEE---TTE--ESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred EEECC----ccccccCCccchhhcceEeEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 68888 67889999999999999999999999 787 89999999999999999999998 9999999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCCC--CcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcc
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~--~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
+.|+. .+.|||++++++.+.+|+.++. .++++++ .|.. . ...++++.++ ++.|+.+++++++|++
T Consensus 77 ~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~---~-~~~~v~l~~~-~~~r~~~~~~~~~Kt~ 143 (272)
T 3lul_A 77 QKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYS---I-QKHPVRLISI-NWLRDKANPLYQLKSV 143 (272)
T ss_dssp HHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCC---C-CCSCEEEEEE-EEEECTTCGGGGSCBS
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCC---C-ccccEEEEEE-eEEecCCCcccchhhh
Confidence 99874 4689999998766677887653 3556555 4432 2 2245888876 6889888889999996
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+++++++++|+++|+||+||+|.+ |+|+|++++|||+++||+.
T Consensus 144 -nyl~~~la~~~A~~~G~de~L~ld~~--g~v~E~~~sNif~~~~g~l 188 (272)
T 3lul_A 144 -NYLEAIIAQRQAIAVGADDALFFNTE--NHVTETTCANLFLIENNIL 188 (272)
T ss_dssp -CCHHHHHHHHHHHHTTCSEEEEEETT--SBEEEESSCEEEEEETTEE
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEECCC--CeEEEcCCeEEEEEECCEE
Confidence 99999999999999999999999975 9999999999999999875
No 12
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=7.1e-37 Score=279.84 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=160.3
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (291)
+|.||+ .++.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.++.+++.++|.++++
T Consensus 2 ~~~nG~----~~~~i~~~d~g~~yG~gvfEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~ 72 (269)
T 1i2k_A 2 FLINGH----KQESLAVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA 72 (269)
T ss_dssp EEETTE----EESCCCTTCHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCC----cCCccCccccccccceeEEEEEEEE---CCE--EecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 588998 2578999999999999999999999 886 8999999999999999999998789999999999998
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccC-CCcCEEEEEeccccccCCCCCCCCCcc
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~-G~~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
.+. ++|||++++++.+.+|+.|+ .+++++|.+.|.++++.. ..+++++.++ +++|..+..++++|++
T Consensus 73 ~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~-~~~~~~~~~~~~~Kt~ 142 (269)
T 1i2k_A 73 EQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS-PVRLGRNPHLAGIKHL 142 (269)
T ss_dssp HHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEEC-SCCBCCCTTTTBCCBS
T ss_pred hCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEe-ceecCCCCcccCcchh
Confidence 642 47999999977667788775 578999999999876532 2357899887 4677666679999996
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+.++++.++|+++|+||+||+|.+ |+|+|++++|||+++||+.
T Consensus 143 -n~~~~~~a~~~A~~~G~de~l~ld~~--G~v~E~s~sNif~v~~g~l 187 (269)
T 1i2k_A 143 -NRLEQVLIRSHLEQTNADEALVLDSE--GWVTECCAANLFWRKGNVV 187 (269)
T ss_dssp -CCHHHHHHHHHHTTSSCSEEEEEBTT--SBEEECSSSEEEEEETTEE
T ss_pred -hhHHHHHHHHHHHHCCCCEEEEECCC--CcEEEcCceEEEEEECCEE
Confidence 99999999999999999999999975 9999999999999999875
No 13
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=3.7e-36 Score=278.78 Aligned_cols=182 Identities=20% Similarity=0.223 Sum_probs=158.0
Q ss_pred eEEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~ 164 (291)
.|.||+++ +.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+||.+ .+++.++|.++++
T Consensus 24 ~~~nG~~~----~~i~~~d~g~~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~-~~~l~~~i~~~v~ 93 (292)
T 2xpf_A 24 DWVDGRPA----AELSVRDRGLAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAIPLD-TAALRQELLAFCA 93 (292)
T ss_dssp EEETTEEC----SEEETTBHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred EEECCEEE----EEEcccchhhhcCcEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHH
Confidence 79999998 78999999999999999999999 887 78999999999999999999985 8999999999998
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCC--CCcEEEEEEeecCCcccC-CCcCEEEEEeccccccCCCCCCCCCcc
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGAGGVKAI 241 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~~-G~~pv~l~v~~~~~Ra~p~g~g~~Kt~ 241 (291)
... +.|||++++++.+.+|+.|+ .+++++|.+.|+++++.. ..+++++.+++ +.|..+.+++++|++
T Consensus 94 ~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 163 (292)
T 2xpf_A 94 ALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFACR-TRLAEQPLLAGLKHL 163 (292)
T ss_dssp HHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEECC-CCBCCCTTTTBCCBS
T ss_pred hCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEee-eeccCCCCCCCcchh
Confidence 742 36999999865556788775 478899999999876632 13578998875 555555568899996
Q ss_pred cChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 242 gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+.+++++++|+++|+||+||+|++ |+|+|++++|||+++||+.
T Consensus 164 -ny~~~~la~~~A~~~G~de~L~ld~~--G~V~Egs~sNif~v~~g~l 208 (292)
T 2xpf_A 164 -NRLEQVLARAEWSDAGHAEGLMLDVH--ERVVEGVFSNLLLVLDGTL 208 (292)
T ss_dssp -CCHHHHHHHTTCCCTTCSEEEEEBTT--CCEEEESSSEEEEEETTEE
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECCC--CCEEEcCCeEEEEEECCEE
Confidence 99999999999999999999999985 9999999999999999875
No 14
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.6e-36 Score=281.95 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=131.7
Q ss_pred eEEc---Cee--eeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 022854 85 YFEK---GRL--SRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (291)
Q Consensus 85 ~w~n---g~l--vp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i 159 (291)
+|.| |++ +|.+++.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+||.|+.+++.+++
T Consensus 17 v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i 91 (315)
T 3sno_A 17 LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIR---DGH--ACNVRRHGERFKASAALLGLPEPILEDWEKAT 91 (315)
T ss_dssp EEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred EEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 6899 999 9999999999999999999999999999 787 88999999999999999999998999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCC-CcCEEEEEecc-c----------
Q 022854 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDE-F---------- 227 (291)
Q Consensus 160 ~~lv~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G-~~pv~l~v~~~-~---------- 227 (291)
.++++.+. |+.+..++|||++++++.+.+| .++++|++.|+++++... .+++++.+++. +
T Consensus 92 ~~~v~~~~---~~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~ 163 (315)
T 3sno_A 92 QMGIESWY---SHPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIG 163 (315)
T ss_dssp HHHHHHHH---TC--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHHHHHCEEEEEEEC------------
T ss_pred HHHHHhhc---ccCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhhhcCCEEEEEecccccccccccccc
Confidence 99999832 1101257899999986654443 368899999988664321 24677777641 1
Q ss_pred -----------cccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 228 -----------HRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 228 -----------~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
.|..|++++++||+ ||+.++++.++|+++|+||+||+|.+ | |+|++++|||+++||+.
T Consensus 164 ~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~~--G-v~E~s~sN~f~~~~g~l 232 (315)
T 3sno_A 164 KATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDGD--R-VLEGATSTVVSFKGDKI 232 (315)
T ss_dssp ------------------------------------------CEEEEEEETT--E-EEEESSSEEEEEETTEE
T ss_pred ccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeCC--C-cEEcCCeeEEEEECCEE
Confidence 12345567899998 99999999999999999999999985 9 99999999999999875
No 15
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=3.9e-33 Score=252.27 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=141.0
Q ss_pred eEEcCeeeeCCCcccCcCCccccc-cCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 022854 85 YFEKGRLSRYGKIELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTA 163 (291)
Q Consensus 85 ~w~ng~lvp~~~~~l~~~d~~l~Y-G~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv 163 (291)
.|.||+.. +++.|++|+| |||||||||+| +|+ +|++++|++||.+||++|+|+.+..+++.+++.+++
T Consensus 2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~ 70 (246)
T 2zgi_A 2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALL 70 (246)
T ss_dssp EEETTEEC------CCSSCHHHHHSCCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEECCccc------CCCccCcccccCeeEEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 48899954 4899999999 99999999999 786 899999999999999999999873389999999999
Q ss_pred HHcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccC
Q 022854 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISN 243 (291)
Q Consensus 164 ~~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gN 243 (291)
+.|.. .+++|||++++++++.+|+.|.+ .+..+++. +++++.+++ + |..|+ ++++|++ |
T Consensus 71 ~~~~~------~~~~~vR~~v~~g~~~~~~~p~~--------~~~~~~~~---~g~~l~~~~-~-r~~~~-~~~~Kt~-n 129 (246)
T 2zgi_A 71 RAFPK------APCLRLRFTVGEGVRLSEARPYA--------PLPLSLYR---EGVRVRLTG-Y-RVHPD-LARYKTG-N 129 (246)
T ss_dssp TSCTT------CSEEEEEEEEETTEEEEEEEECC--------CCCTHHHH---HCBCEEEEE-E-ECCTT-TTTSCBS-C
T ss_pred HhcCC------CCCEEEEEEEECCCCccCcCcCC--------CCchhHhh---cCeEEEEec-c-cCCCC-Cccchhh-h
Confidence 87721 25799999998665545553321 11122333 356788874 5 88887 8899998 9
Q ss_pred hHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 244 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 244 Y~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+.++++.++|+++|+||+||+|++ |+|+|++++|||+++||+.
T Consensus 130 ~~~~~~a~~~A~~~g~de~l~ld~~--G~v~Egs~sNif~v~~g~l 173 (246)
T 2zgi_A 130 YLPYRLALEEARKEGAFEGLLLDAF--GHVVDGSRTSPLLFREGTL 173 (246)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEECTT--SCEEEESSSEEEEEETTEE
T ss_pred hHHHHHHHHHHHHcCCCEEEEECCC--CCEEEcCCeEEEEEECCEE
Confidence 9999999999999999999999975 9999999999999999975
No 16
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=99.97 E-value=1.4e-31 Score=247.23 Aligned_cols=171 Identities=19% Similarity=0.164 Sum_probs=146.5
Q ss_pred EEcCeeeeCCCcccCcCCccccccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHH
Q 022854 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (291)
Q Consensus 86 w~ng~lvp~~~~~l~~~d~~l~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~-~~e~~~~~i~~lv~ 164 (291)
|.+|++++..++.+++.|++| |||||||||+| +|+ +|++++|++||.+||++|+||.+ +.+++.+++.++++
T Consensus 18 ~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~ 90 (285)
T 3csw_A 18 RGKFRRADEISLDFSLFEKSL--QGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90 (285)
T ss_dssp TTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHHT
T ss_pred ccCceEcccccCEeCCccccc--ceeeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 889999999999999999999 99999999999 887 89999999999999999999966 99999999999998
Q ss_pred HcCCCCCCCCCceEEEEEEEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCC-CCCCCCcccC
Q 022854 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG-GAGGVKAISN 243 (291)
Q Consensus 165 ~n~~~vP~~~~~~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~-g~g~~Kt~gN 243 (291)
.++ +..|||+++... .++++|.+.|+++++ ..+++++.++ ++.|.... .+.++|++ |
T Consensus 91 ~~~--------~~~~iR~~v~~~----------~~~~~i~~~p~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~~Kt~-~ 148 (285)
T 3csw_A 91 EFK--------QEVRIKVYLFPD----------SGEVLFVFSPLNIPD--LETGVEVKIS-NVRRIPDLSTPPALKIT-G 148 (285)
T ss_dssp TCS--------SCEEEEEEECTT----------TCCEEEEEEECCCCC--CTTCEEEEEC-SSCCCCTTTSCTTCCBT-T
T ss_pred hhC--------CCeEEEEEEEcC----------CCEEEEEEEeCCCcc--ccCCeEEEEE-eEEecCCCCCCCccchh-c
Confidence 874 247999888211 126889999998765 2357888886 45554333 35799998 7
Q ss_pred hHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 244 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 244 Y~~~l~a~~~A~~~G~dd~L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
|+++++++++|++ +||+||+|++ |+|+|++++|||+++||+.
T Consensus 149 ~l~~~la~~~A~~--~de~L~ld~~--G~V~Egs~sNif~v~~g~l 190 (285)
T 3csw_A 149 RTDIVLARREIVD--CYDVILLGLN--GQVCEGSFSNVFLVKEGKL 190 (285)
T ss_dssp CHHHHHHHTTCSS--SSEEEEECTT--SBEEEESSSEEEEEETTEE
T ss_pred cHHHHHHHHHHHh--CCeEEEECCC--CcEEEcCceEEEEEECCEE
Confidence 9999999998877 9999999975 9999999999999999875
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=99.96 E-value=5e-28 Score=215.91 Aligned_cols=152 Identities=15% Similarity=0.056 Sum_probs=130.4
Q ss_pred ccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceEEEEEEEEec
Q 022854 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187 (291)
Q Consensus 108 YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp~~~g~ 187 (291)
-|++||||||+| ++|+ +|++++|++||.+||++|+||. +.+++.++|.++++ +. .+.+|||++++++
T Consensus 14 ~g~glFEtir~~--~~G~--~~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~~ 80 (221)
T 3qqm_A 14 ADFELIETMRWQ--PGTS--FLRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTRLALARN 80 (221)
T ss_dssp SCCEEEEEEEEE--TTTE--ETTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEEEEEETT
T ss_pred CCCEEEEEEEEe--cCCc--CcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEEEEEEcC
Confidence 489999999998 3676 7899999999999999999995 88999999999987 43 2578999999864
Q ss_pred CCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEEEEEcC
Q 022854 188 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267 (291)
Q Consensus 188 ~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~L~Ld~ 267 (291)
+ .+.|.+.|+++++. .+++++.+++ +.|..++.++++|++ ||+.+++++++|+++|+||+||+|+
T Consensus 81 g-----------~~~i~~~p~~~~~~--~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~~ 145 (221)
T 3qqm_A 81 G-----------DATASAQPYEPLAA--DKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLANE 145 (221)
T ss_dssp S-----------CEEEEEEECCCCCT--TCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEBT
T ss_pred C-----------CEEEEEEcCCCCCC--CCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEECC
Confidence 3 36788889887653 2578898874 677777789999996 9999999999999999999999997
Q ss_pred CCCCeEEEeCCeEEEEEEC-CEe
Q 022854 268 VNKKNLEEVSSCNIFILKG-LLG 289 (291)
Q Consensus 268 ~~~g~V~E~s~sNiF~vk~-g~~ 289 (291)
+ |+|+|++++|||++++ |+.
T Consensus 146 ~--g~v~E~s~sNif~~~~~~~l 166 (221)
T 3qqm_A 146 R--GEICEGTITNVFADFGDGVL 166 (221)
T ss_dssp T--SCEEEESSCEEEEECSSSCE
T ss_pred C--CeEEEcCceeEEEEeCCCEE
Confidence 5 9999999999999997 754
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=99.93 E-value=4e-26 Score=199.09 Aligned_cols=142 Identities=11% Similarity=0.034 Sum_probs=111.4
Q ss_pred cccCeEEEEEEEEEecCCeEEeeChhhHHHHHHHHH-hhcCCC--CC-CHHHHHHHHHHHHHHcCCCCCCCCCceEEEEE
Q 022854 107 NYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGA-ERMCMP--SP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (291)
Q Consensus 107 ~YG~~vFEglkay~~~dG~i~lFr~d~H~~RL~~Sa-~~L~mp--~~-~~e~~~~~i~~lv~~n~~~vP~~~~~~lyIRp 182 (291)
+||++||||||+| +|+ +|++++|++||.+|| ++|+|| .+ +.+++.+++. +++.|+. +++|||+
T Consensus 2 ~~g~~vfEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~-------~~~~iR~ 68 (194)
T 3ceb_A 2 MWQFPLFETILIE---QGQ--AKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHRE-------GLIRCRI 68 (194)
T ss_dssp CTTCCEEEEEEEE---TTE--ECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCSS-------SEEEEEE
T ss_pred CCCCeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCCC-------CCEEEEE
Confidence 6999999999999 887 899999999999999 999999 54 8999999988 8877653 6899998
Q ss_pred EEEecCCCccccCCCCcEEEEEEeecCCcccCCCcCEEEEEeccccccCCCCCCCCCcccChHHHHHHHHHHHHCCCCEE
Q 022854 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDV 262 (291)
Q Consensus 183 ~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~G~~pv~l~v~~~~~Ra~p~g~g~~Kt~gNY~~~l~a~~~A~~~G~dd~ 262 (291)
++.++ .++ +...|..+ .++.... ....+..++++|++ ||+ ++++.+|+++|+||+
T Consensus 69 ~~~~g--~~~----------~~~~p~~~---~~~~~~~-------~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~ 123 (194)
T 3ceb_A 69 DYNHH--DYV----------LQCFPYQQ---KVYRTFK-------PVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEI 123 (194)
T ss_dssp EECSS--CEE----------EEEEEECC---CCCCCEE-------EEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEE
T ss_pred EEeCC--ccE----------EEEecCCC---CcEEEEE-------EecCCCcchhhccc-CHH--HHHHHHHhhCCCCEE
Confidence 88754 122 22233221 1221111 11234468899996 998 778999999999999
Q ss_pred EEEcCCCCCeEEEeCCeEEEEEECCEe
Q 022854 263 LYLDSVNKKNLEEVSSCNIFILKGLLG 289 (291)
Q Consensus 263 L~Ld~~~~g~V~E~s~sNiF~vk~g~~ 289 (291)
||+ .+ |+|+|++++|||+++||+.
T Consensus 124 l~l-~~--G~v~E~s~sNif~~~~g~l 147 (194)
T 3ceb_A 124 MII-RQ--GKVTDCSIGNLIFRQNNQW 147 (194)
T ss_dssp EEE-ET--TEECCCSSSEEEEEETTEE
T ss_pred EEE-eC--CEEEEeccEEEEEEECCEE
Confidence 999 64 9999999999999999975
No 19
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=21.19 E-value=1.3e+02 Score=18.24 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.8
Q ss_pred eeChhhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 022854 128 LFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALAN 166 (291)
Q Consensus 128 lFr~d~H~~RL~~Sa~~L~mp~~~~e~~~~~i~~lv~~n 166 (291)
+.-+++-+++|..-|+..|++ -.+.+.++|.+.+...
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~s--rS~~ir~ai~~~l~~~ 43 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGLS--KSAMISVALENYKKGQ 43 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHCC
T ss_pred EecCHHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHc
Confidence 445799999999999999985 3566778888877643
Done!