RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022854
(291 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 429 bits (1105), Expect = e-151
Identities = 179/270 (66%), Positives = 214/270 (79%), Gaps = 8/270 (2%)
Query: 18 QSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMY 77
+ V S + S A +S S+Y++ +DWDNLGFGL P DYMY
Sbjct: 34 SNSSVSSNPISSKAISLTRCDAVSS-------SSYTEVTELADIDWDNLGFGLVPTDYMY 86
Query: 78 TMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAI 136
MKC+ D F KG L R+G IELSPS+GVLNYGQGLFEG+KAYRKEDG ++LFRP++NAI
Sbjct: 87 IMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRPEENAI 146
Query: 137 RLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196
R++ GAERMCMP+P+++QF++AVK+T LANKRWVPPPGKGSLYIRPLL+GSG +LGLAPA
Sbjct: 147 RMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPA 206
Query: 197 PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKN 256
PEYTFL++ SPVGNYFKEG+AP+NL VE+EFHRATPGG GGVK I NYA VLKA S AK
Sbjct: 207 PEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKA 266
Query: 257 RGFSDVLYLDSVNKKNLEEVSSCNIFILKG 286
+G+SDVLYLD V+KK LEEVSSCNIFI+K
Sbjct: 267 KGYSDVLYLDCVHKKYLEEVSSCNIFIVKD 296
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 396 bits (1019), Expect = e-139
Identities = 187/258 (72%), Positives = 223/258 (86%), Gaps = 4/258 (1%)
Query: 32 FCRYTSQAAASLQQDCEPSAYS--DDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEK 88
F +Y +QAA++L+++ + Y DD AD +DWDNLGFGL PADYMY MKCS F +
Sbjct: 26 FAKYNAQAASALREERKKPLYQNGDDVYAD-LDWDNLGFGLNPADYMYVMKCSKDGEFTQ 84
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G LS YG I+LSPS+GVLNYGQ ++EG KAYRKE+G+L+LFRPD NAIR++ GAERM MP
Sbjct: 85 GELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMP 144
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208
SPS+DQF++AVKQTALANKRWVPP GKG+LYIRPLL+GSGPILGL PAPEYTF+V+ASPV
Sbjct: 145 SPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPV 204
Query: 209 GNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSV 268
GNYFKEG+A LNLYVE+E+ RA PGGAGGVK+I+NYAPVLKA+SRAK+RGFSDVLYLDSV
Sbjct: 205 GNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSV 264
Query: 269 NKKNLEEVSSCNIFILKG 286
KK LEE SSCN+F++KG
Sbjct: 265 KKKYLEEASSCNVFVVKG 282
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 357 bits (917), Expect = e-124
Identities = 145/233 (62%), Positives = 188/233 (80%), Gaps = 2/233 (0%)
Query: 55 DESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLF 113
DE ++ W+ LGF L P DYMY KC + F +G++ YG I +SP +G+LNYGQGLF
Sbjct: 14 DEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLF 73
Query: 114 EGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPP 173
EG+KAYR EDG++ LFRPDQNA+R+QTGA+R+CM PS++QF++AVKQT LANK+WVPPP
Sbjct: 74 EGLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPP 133
Query: 174 GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPG 233
GKG+LYIRPLL+GSG +LG+APAPEYTFL++ASPVGNY K + LNL V+ + RA G
Sbjct: 134 GKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKAS-SGLNLKVDHKHRRAHSG 192
Query: 234 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG 286
G GGVK+ +NY+PV+K++ AK+ GFSDVL+LD+ KN+EE+S+CNIFILKG
Sbjct: 193 GTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKG 245
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 342 bits (878), Expect = e-117
Identities = 169/281 (60%), Positives = 207/281 (73%), Gaps = 4/281 (1%)
Query: 7 MIRNACLRNFSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNL 66
M CL S + S K F + ++AAAS+ ++ A +DE +DWD L
Sbjct: 1 MALRRCLPQSSTT---SSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKL 57
Query: 67 GFGLTPADYMYTMK-CSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQ 125
GF L D+M+ K C + FE+G LSRYG IEL+P++G+LNYGQGL EGMKAYR EDG+
Sbjct: 58 GFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGR 117
Query: 126 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLV 185
++LFRP+ NA+R++ GAERMCM SPS+ QFI+ VKQT LAN+RWVPPPGKGSLY+RPLL
Sbjct: 118 ILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLF 177
Query: 186 GSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYA 245
GSG LG+A APEYTFLVF SPV NYFKEG A LNLYVE+ RA GG GGVKAISNY
Sbjct: 178 GSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYG 237
Query: 246 PVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG 286
PVL+ + RAK+RGFSDVLYLD+ KN+EEVS+ NIF++KG
Sbjct: 238 PVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKG 278
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 324 bits (833), Expect = e-111
Identities = 112/227 (49%), Positives = 147/227 (64%), Gaps = 2/227 (0%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRK 121
DW NLGFG D+M + + + RL YG +EL P++ VL+YGQ +FEG+KAYR
Sbjct: 18 DWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRH 77
Query: 122 EDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLYI 180
+DG +VLFRPD NA RLQ A+R+ MP + F++AVKQ A++ WVPP G+G SLY+
Sbjct: 78 KDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYL 137
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKA 240
RP ++ + P LG+ PA EY F V ASPVG YFK G+ P++++V DE+ RA PGG G K
Sbjct: 138 RPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKV 197
Query: 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKG 286
NYA L A + AK +G VLYLD+V +EEV N F I K
Sbjct: 198 GGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKD 244
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 254 bits (652), Expect = 1e-84
Identities = 90/189 (47%), Positives = 118/189 (62%), Gaps = 2/189 (1%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
L P++ L+YGQ +FEG+KAYR DG++VLFRPD+NA RL A R+ +P S+++FID
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 158 AVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLA 217
A+K+ + WVP G SLYIRP + G+ P LG++PA EY F VFASPVG YFK G
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 218 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVS 277
++ V F RA PGG G KA NYA L A A +G+ L+LD + EV
Sbjct: 121 GVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDG-AHGYVAEVG 178
Query: 278 SCNIFILKG 286
+ NIF +K
Sbjct: 179 TMNIFFVKD 187
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 245 bits (627), Expect = 2e-80
Identities = 105/199 (52%), Positives = 134/199 (67%), Gaps = 1/199 (0%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
GRL+ YG + L P S VL+YGQ FEG+KAYR DG +VLFRPD NA RL+ A R+ MP
Sbjct: 4 GRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMP 63
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKG-SLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
+ F++A++Q ANK WVPP G G SLY+RP ++G+ P LG+ PAPEY F VFASP
Sbjct: 64 ELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASP 123
Query: 208 VGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267
VG YFK GLAP++++V E+ RA PGG G VK NYA L A ++A +G V+YLD
Sbjct: 124 VGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVYLDP 183
Query: 268 VNKKNLEEVSSCNIFILKG 286
V +EEV + N F + G
Sbjct: 184 VEHTYIEEVGAMNFFFITG 202
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 165 bits (420), Expect = 5e-50
Identities = 68/185 (36%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163
L+YG G+FEG++A + LFR D++ RL A+R+ +P P ++ +A+K+
Sbjct: 3 GLHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELV 57
Query: 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP--EYTFLVFASPVGNYFKEGLAPLNL 221
AN SLYIRPLL LG+AP P E TF+VFASPVG Y K G + L
Sbjct: 58 AANN-------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRL 110
Query: 222 YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 281
+ RA PGG G K + A A G + L LD + E S+ N+
Sbjct: 111 ITSPDRRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDD--NGYVTEGSASNV 167
Query: 282 FILKG 286
FI+K
Sbjct: 168 FIVKD 172
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 152 bits (387), Expect = 9e-45
Identities = 70/201 (34%), Positives = 97/201 (48%), Gaps = 15/201 (7%)
Query: 88 KGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCM 147
G L +LS L+YG G+FE ++AY + LFR D++ RL+ A+R+ +
Sbjct: 7 NGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSAKRLGL 61
Query: 148 PSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207
P P ++ I+ + Q LA VP LYIRPL+ G G LG+ A E T +V ASP
Sbjct: 62 PRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAASP 116
Query: 208 VGNYFKEGLA--PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 265
VG Y K G + L + R P G G K NY + A AK G + L L
Sbjct: 117 VGAYLKGGRLEKGVVLVISSPV-RRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLL 175
Query: 266 DSVNKKNLEEVSSCNIFILKG 286
D + E + N+F +KG
Sbjct: 176 DE--DGYVTEGAGSNVFFVKG 194
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 72.4 bits (178), Expect = 1e-14
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 105 VLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163
L+YG G+FEG++AY + G +FR ++ RL A+ M P S ++ ++A ++T
Sbjct: 20 ALHYGTGVFEGIRAYDTDKG-PAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETL 78
Query: 164 LANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT--FLVFASPVGNYFKEGLAPLN 220
N S YIRPL+ G G LGL P Y ++ A P G Y E
Sbjct: 79 RKN-------NLRSAYIRPLVFRGDGD-LGLNPRAGYKPDVIIAAWPWGAYLGEEALEKG 130
Query: 221 LYVE-DEFHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ + + R P KA NY L A S A+ G+ + + LD + + E S
Sbjct: 131 IDAKVSSWRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSG 188
Query: 279 CNIFILKG 286
NIFI+K
Sbjct: 189 ENIFIVKD 196
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 64.4 bits (158), Expect = 6e-12
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 34/194 (17%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+YG G+FEG++AY G + FR ++ RL A+ + M P S+D+ ++A ++
Sbjct: 30 LHYGTGVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 165 ANKRWVPPPGKGSLYIRPLL-VGSGPILGLAPAPEYT---FLVFASPVGNYF-KEGLAP- 218
N S YIRPL+ VG GL P + A P G Y +E L
Sbjct: 89 KNNL-------KSAYIRPLVFVGDE---GLGVRPHGLPTDVAIAAWPWGAYLGEEALEKG 138
Query: 219 LNLYVEDEFHRA----TPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 274
+ + V + R P A KA NY + A + A+ G+ + L LD
Sbjct: 139 IRVKVS-SWTRHAPNSIPTRA---KASGNYLNSILAKTEARRNGYDEALLLDVEGY---- 190
Query: 275 EVSSC---NIFILK 285
VS NIFI++
Sbjct: 191 -VSEGSGENIFIVR 203
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 61.3 bits (149), Expect = 3e-11
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 129 FRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSG 188
F D++ RL+ A+ + SI+ +++ AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 189 PILGLAPAPEYTFLVFASPVGNYFK-EGLAPLN-LYVEDEFHRATPGGAGGVKAISNYAP 246
GL+P ++ + L L + G K +
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGH---KTTNYLDN 111
Query: 247 VLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG 286
VL A+ A+ GF D L LD N+ E S+ NIFI+KG
Sbjct: 112 VLAALRAAERAGFDDALLLDE--DGNVTEGSTSNIFIVKG 149
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 59.2 bits (144), Expect = 2e-10
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 32/187 (17%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANK 167
YG G+FE M+A DG+L L D + RL+ A R+ +P P + + A++ AN
Sbjct: 6 YGDGVFETMRAL---DGRLFLL--DAHLARLERSARRLGIPEPDLPRLRAALESLLAAN- 59
Query: 168 RWVPPPGKGSLYIRPLLV-GSGPILGLAPA--PEYTFLVFASPVGNYFKE-----GLAPL 219
+G IR +L G G G AP+ P V P+ +++ P+
Sbjct: 60 ----DIDEG--RIRLILSRGPGG-RGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPV 112
Query: 220 NLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSC 279
L G+K + NY + A A++RG + L+LD+ + E ++
Sbjct: 113 RL--------GEQPLLAGLKHL-NYLENVLAKREARDRGADEALFLDTDG--RVIEGTAS 161
Query: 280 NIFILKG 286
N+F +K
Sbjct: 162 NLFFVKD 168
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 47.6 bits (114), Expect = 3e-06
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 47/195 (24%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E ++ Y +G F D++ RL A+ + + P + ++ + +++ N
Sbjct: 23 FGDGVYEVIRVY---NG--KPFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDE 226
+ G+G +YI+ + G GP P +V + L P L
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQPLP-----LPPAELL---- 122
Query: 227 FHRATPGGAGGVKAIS--------------NYAP-VLKAISRAKNRGFSDVLYLDSVNKK 271
GV+ I+ N VL AK G + + LD+
Sbjct: 123 --------EKGVRVITVPDIRWLRCDIKSLNLLNNVLAKQ-EAKEAGADEAILLDADG-- 171
Query: 272 NLEEVSSCNIFILKG 286
+ E SS N+FI+K
Sbjct: 172 LVTEGSSSNVFIVKN 186
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 45.7 bits (109), Expect = 1e-05
Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 30/169 (17%)
Query: 109 GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKR 168
G G+FE + DG+ + RL A + +P P +D++ AV LA +
Sbjct: 38 GDGVFETLLVR---DGRPCNLEA--HLERLARSAALLDLPEPDLDRWRRAV---ELAIEE 89
Query: 169 WVPPPGKGSL---YIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFK----EGLAPLNL 221
W P + +L Y R G P T V SPV EG++ + L
Sbjct: 90 WRAPEDEAALRLVYSRGRESGGAP----------TAWVTVSPVPERVARARREGVSVITL 139
Query: 222 ---YVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267
Y D RA P G K +S YA + A+ A RG DV++ +
Sbjct: 140 DRGYPSDAAERA-PWLLAGAKTLS-YAVNMAALRYAARRGADDVIFTST 186
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 45.3 bits (108), Expect = 1e-05
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 173 PGKGSLYIRPLLVG-SGPILGLAPAPEYT---FLVFASPVGNY--FKEGLAPLNLYVEDE 226
+LYIRP+ G G+AP PE T + +P+ F L+P
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSP-------- 138
Query: 227 FHRATPGGA-GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK 285
F R T A KA Y +A+ A++RGF + L LD + N+ E ++ N+F++K
Sbjct: 139 FRRPTLEMAPTDAKAGCLYPNNARALREARSRGFDNALVLDMLG--NVAETATSNVFMVK 196
Query: 286 G 286
Sbjct: 197 D 197
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 42.2 bits (100), Expect = 1e-04
Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 76/215 (35%)
Query: 104 GVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQT 162
G L YG G+FEG++AY +G +FR ++ RL A+ + + P S ++ + V +T
Sbjct: 25 GFL-YGDGVFEGIRAY---NG--RVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLET 78
Query: 163 ALANKRWVPPPGKGSLYIRPLL---VGSGPILGLAP--APEYTFLVFASPVGNYFKEGLA 217
N YIR ++ VG LGL P P+ T + A P+G Y E
Sbjct: 79 LRKN-------NLRDAYIRLVVSRGVGD---LGLDPRKCPKPTVVCIAEPIGLYPGE--- 125
Query: 218 PLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVL--------YLDSV- 268
LY G LK I+ + R D L YL+++
Sbjct: 126 ---LY--------EKG--------------LKVITVSTRRNRPDALSPQVKSLNYLNNIL 160
Query: 269 -----NKKNLEE---------VSSC---NIFILKG 286
N ++E V+ NIFI+K
Sbjct: 161 AKIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKN 195
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 39.6 bits (93), Expect = 0.001
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 106 LNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164
L+Y +FEG +AY G+ +F+ +++ RL+ AE + P S+ + IDA K+ L
Sbjct: 32 LHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVAE-IDAAKKETL 85
Query: 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-PVGNYF----KEGLAPL 219
A Y+RP+ ++G++ L A+ +YF K L
Sbjct: 86 AANGLT------DAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRL 139
Query: 220 NLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS--RAKNRGFSDVLYLDSVNKKNLEEV 276
++ ++ R P A KA Y ++ IS A+ +G++D L LD + + E
Sbjct: 140 DI---AKWRRPDPETAPSAAKAAGLY--MICTISKHAAEAKGYADALMLDY--RGYVAEA 192
Query: 277 SSCNIFILK 285
+ NIF +K
Sbjct: 193 TGANIFFVK 201
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 39.1 bits (92), Expect = 0.001
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
LS S YG G F R DGQ+ L ++ RLQ ER+ +P Q
Sbjct: 11 SLSVSDRSTQYGDGCFTTA---RVRDGQVSLL--SRHLQRLQDACERLAIPLDDWAQLEQ 65
Query: 158 AVKQTALA 165
+KQ A
Sbjct: 66 EMKQLAAE 73
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 38.7 bits (91), Expect = 0.002
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFID 157
++S S L YG G F K +G++ L D + RLQ A R+ +P P D +
Sbjct: 9 QISVSDRGLQYGDGCFTTAKVR---NGKIELL--DLHLERLQDAAARLGIPLPDWDALRE 63
Query: 158 AVKQTAL 164
+ Q A
Sbjct: 64 EMAQLAA 70
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 35.7 bits (82), Expect = 0.019
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
YG G+FEG+++Y +F ++ RL A+ + + P ++D+ +AV QT N
Sbjct: 29 YGDGVFEGIRSYGGN-----VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 167 KRWVPPPGKGSLYIRPLLVGSGP-ILGLAP 195
YIR L+V G LGL P
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDP 105
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.8 bits (72), Expect = 0.48
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 2 MRPATMIRNACLRNFSQSLR------------VGSAFLKSGDFCRYTSQAAASLQQDCEP 49
+ P T RN ++SLR +A LK R+TS A+L+Q EP
Sbjct: 423 LSPRTTRRNMLATELTESLRRNLLWERQQKSATANAVLKR----RHTSHDVANLKQYPEP 478
Query: 50 SAYSDDESADHMDWD 64
D+ + W+
Sbjct: 479 PGAKKDKDVKNSSWN 493
>gnl|CDD|212579 cd11706, DHR2_DOCK2, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 2. Dock2 is a hematopoietic
cell-specific, class A DOCK and is an atypical guanine
nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It plays an important role in lymphocyte migration
and activation, T-cell differentiation, neutrophil
chemotaxis, and type I interferon induction. DOCK
proteins are divided into four classes (A-D) based on
sequence similarity and domain architecture; class A
includes Dock1, 2 and 5. All DOCKs contain two homology
domains: the DHR-1 (Dock homology region-1), also called
CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and
DHR-2 (also called CZH2 or Docker). The DHR-1 domain
binds phosphatidylinositol-3,4,5-triphosphate. This
alignment model represents the DHR-2 domain of Dock2,
which contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock2, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 421
Score = 29.6 bits (66), Expect = 1.9
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 108 YGQG----------LFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQ 154
YGQG ++ G + R+ED Q+ L NA +L T + P I
Sbjct: 149 YGQGFPSFLRNKVFIYRGKEYERREDFQMQLMSQFPNAEKLNTTS----APGDDIKN 201
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 29.4 bits (66), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 64 DNLGFGLTP--ADYMYTMKCSNDYFEKGRLSRYG 95
D LGFG +P AD +YT++ + E+ L RY
Sbjct: 239 DLLGFGRSPKPADSLYTLREHLEMIERSVLERYK 272
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 73 and 85 amino acids
in length.
Length = 83
Score = 27.2 bits (60), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 183 LLVGSGPILGLAPAPEYTFL 202
LL+G+ ILGL AP Y F+
Sbjct: 59 LLLGTASILGLLAAPAYFFI 78
>gnl|CDD|226222 COG3698, COG3698, Predicted periplasmic protein [Function unknown].
Length = 250
Score = 28.5 bits (64), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 191 LGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 238
L A + L+FA G Y APL LYVE+ + AGG
Sbjct: 69 LLAALNKQGQSLLFAMNGGMY-HPDYAPLGLYVENGKEQVPLNTAGGE 115
>gnl|CDD|237973 PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional.
Length = 759
Score = 28.1 bits (63), Expect = 6.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 96 KIELSPSSGVLNYGQGLFEG---------MKAYRKEDGQLVLFRP 131
K +L+ S ++N+G L+EG M A ++ +LV+F P
Sbjct: 191 KRDLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP 235
>gnl|CDD|226595 COG4110, COG4110, Uncharacterized protein involved in stress
response [General function prediction only].
Length = 200
Score = 27.1 bits (60), Expect = 8.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 112 LFEGMKAYRKEDGQLVLFRPDQNAI--RLQTGAERMCM 147
++EG+ ++ K DG + + PDQ I +L G R M
Sbjct: 120 IYEGVPSWDKTDGVVTIKVPDQPPIETQLTEGENRRTM 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,047,202
Number of extensions: 1445856
Number of successful extensions: 1134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 31
Length of query: 291
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 195
Effective length of database: 6,679,618
Effective search space: 1302525510
Effective search space used: 1302525510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)