Query 022855
Match_columns 291
No_of_seqs 250 out of 669
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0010 Ubiquitin-like protein 100.0 3E-48 6.6E-53 377.1 19.0 244 1-284 159-404 (493)
2 KOG0010 Ubiquitin-like protein 99.3 1.6E-11 3.4E-16 121.0 10.4 80 202-285 153-236 (493)
3 smart00727 STI1 Heat shock cha 97.6 6.5E-05 1.4E-09 50.3 3.7 36 208-243 4-39 (41)
4 smart00727 STI1 Heat shock cha 97.4 0.00015 3.1E-09 48.6 2.7 32 2-33 5-40 (41)
5 PF09280 XPC-binding: XPC-bind 95.4 0.028 6E-07 41.1 4.3 40 210-249 3-46 (59)
6 PF09280 XPC-binding: XPC-bind 92.8 0.22 4.7E-06 36.4 4.4 37 2-38 2-46 (59)
7 TIGR00601 rad23 UV excision re 92.2 0.23 5E-06 48.9 5.2 49 208-256 248-301 (378)
8 TIGR00601 rad23 UV excision re 88.9 0.9 2E-05 44.7 6.0 38 243-285 262-301 (378)
9 KOG0011 Nucleotide excision re 86.7 1.1 2.4E-05 43.3 4.9 42 208-255 216-257 (340)
10 KOG0011 Nucleotide excision re 74.0 7.8 0.00017 37.6 5.9 39 242-285 229-269 (340)
11 PF05952 ComX: Bacillus compet 27.7 60 0.0013 23.6 2.5 25 217-241 2-26 (57)
12 KOG2666 UDP-glucose/GDP-mannos 23.5 32 0.0007 33.7 0.6 49 37-93 145-197 (481)
13 PHA02901 virus redox protein; 22.6 1.5E+02 0.0033 22.7 3.9 23 12-34 27-49 (75)
No 1
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=3e-48 Score=377.10 Aligned_cols=244 Identities=46% Similarity=0.774 Sum_probs=191.3
Q ss_pred ChhhhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChhhhhcCCChHHHHHHHHHhhCHHHHHHHHhhhhhhhhhccCC
Q 022855 1 MREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESS 80 (291)
Q Consensus 1 ~~~mm~nP~~q~lm~NP~~m~~mi~~nP~~~~m~~~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d~a~~~le~~ 80 (291)
+++||+||+||+||+|||+||++|.+||+|+++|++|||++|+++||+++||++|++|||++++|+||++|++++++|+|
T Consensus 159 ~~~~m~nP~vq~ll~Npd~mrq~I~anPqmq~lm~~npei~h~ln~p~i~rQtle~arNP~m~qemmrn~d~a~Snlesi 238 (493)
T KOG0010|consen 159 LRQMMENPIVQSLLNNPDLMRQLIMANPQMQDLMQRNPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQDRAMSNLESI 238 (493)
T ss_pred HHHhhhChHHHHHhcChHHHHHHHhcCHHHHHHHhhCCcchhhhcChHHHHHHHHhccCHHHHHHHHhhccccccChhcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhhhhccchhhhhhhcccCCCCCCCCCchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 022855 81 PEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQAREGSNNPSTTTSESTTGSPAPNTNPLPNPWMA 160 (291)
Q Consensus 81 PgG~n~l~~~~~d~q~p~~na~~~~~~~~~~~~npfa~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~en~~pLpNPw~~ 160 (291)
||||++||++|+||+|||+|+... .|++|||++|.+..+.... +++++ ||++|+||||+.
T Consensus 239 PgG~n~l~~my~diqdPm~Na~~~-----~~g~Npfasl~~~~~s~~~--------------~~~~~-eN~~plPn~~~~ 298 (493)
T KOG0010|consen 239 PGGYNALRRMYTDIQDPMLNAASE-----QFGGNPFASLPGNQGSGTG--------------GSPSP-ENNSPLPNPWAQ 298 (493)
T ss_pred ccHHHHHHHHhhhccchhhhhccc-----ccCCCCcccccCccccCCC--------------CCCCc-ccCCCCCCcccC
Confidence 999999999999999999999874 4899999999877765311 11233 899999999985
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCC-CCCCCCCCCCcccccC-CCCChHHHHhccCChHHHHHHHHhhCChHHHHHHhhCC
Q 022855 161 AGTGGAQTNTTRSSSLGDARPQTP-AGIAGLSSPGFEDIFG-AMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLN 238 (291)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~-~g~~g~g~~~~~~~~g-~~~~p~~m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~n 238 (291)
+...... ......+.++.+.+.. ...+.++.++..+..+ ...++.++++|++ |++++|++.+.+||.++.+
T Consensus 299 ~~~~s~~-a~~~~~~t~G~~s~~~~~n~s~~~~~~~~a~lq~i~~n~~~~~~l~s-~~~~~m~~~~s~~P~~a~~----- 371 (493)
T KOG0010|consen 299 ASTTSSP-AANPTPGTSGGTSSNGNSNPSQLGSPGMQAGLQMITENPSLLQQLLS-PYIRSMFQSASQNPLQAAQ----- 371 (493)
T ss_pred CCCCCCC-CCCCCcCccCccccCCCCCccccCCcchhhhhhccccChhhhhhccc-hhhHHHHhhhccCchhhhc-----
Confidence 3211100 0000000011000000 0000122222222222 2478899999999 9999999999999998866
Q ss_pred hhHHHhhhhChHHHHhhCChHHHHhhcCHHHHHHHHHHHHHHHHhh
Q 022855 239 PQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQL 284 (291)
Q Consensus 239 P~l~~m~~~nP~~~~~m~nP~~l~~m~NP~~mqammQiqq~~~~~~ 284 (291)
||+ |+||+++++|+||+++++++||||++....
T Consensus 372 ------------~~~-mq~p~~~~~~~np~a~~ai~qiqq~~~~~~ 404 (493)
T KOG0010|consen 372 ------------LRQ-MQNPDVLRAMSNPRAMQAIRQIQQGLQTLA 404 (493)
T ss_pred ------------ccc-ccCchHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 335 889999999999999999999999998754
No 2
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=121.01 Aligned_cols=80 Identities=39% Similarity=0.678 Sum_probs=74.3
Q ss_pred CCChHHHHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhhCChHHHHh----hcCHHHHHHHHHHH
Q 022855 202 MQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQ----LTNPETMQQMVTLQ 277 (291)
Q Consensus 202 ~~~p~~m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m~nP~~l~~----m~NP~~mqammQiq 277 (291)
..+|+++.+||+||.+ |.|++||+||+|+|.+||++++++++||+++|+++||+++|+ .+||+.+|++|+++
T Consensus 153 ~snpe~~~~~m~nP~v----q~ll~Npd~mrq~I~anPqmq~lm~~npei~h~ln~p~i~rQtle~arNP~m~qemmrn~ 228 (493)
T KOG0010|consen 153 LSNPEALRQMMENPIV----QSLLNNPDLMRQLIMANPQMQDLMQRNPEIGHLLNNPLILRQTLESARNPEMMQEMMRNQ 228 (493)
T ss_pred ccCHHHHHHhhhChHH----HHHhcChHHHHHHHhcCHHHHHHHhhCCcchhhhcChHHHHHHHHhccCHHHHHHHHhhc
Confidence 4799999999999987 778899999999999999999999999999999999999998 47999999999999
Q ss_pred HHHHHhhh
Q 022855 278 QFLLTQLG 285 (291)
Q Consensus 278 q~~~~~~~ 285 (291)
+...+++.
T Consensus 229 d~a~Snle 236 (493)
T KOG0010|consen 229 DRAMSNLE 236 (493)
T ss_pred cccccChh
Confidence 98777764
No 3
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=97.64 E-value=6.5e-05 Score=50.32 Aligned_cols=36 Identities=39% Similarity=0.621 Sum_probs=31.7
Q ss_pred HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHH
Q 022855 208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRS 243 (291)
Q Consensus 208 m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~ 243 (291)
+.++++||+++++++.+++||++++.++.+||++++
T Consensus 4 ~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~ 39 (41)
T smart00727 4 MALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQ 39 (41)
T ss_pred HHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHh
Confidence 456778999999999999999999999877888764
No 4
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=97.37 E-value=0.00015 Score=48.61 Aligned_cols=32 Identities=28% Similarity=0.629 Sum_probs=23.0
Q ss_pred hhhhCCHHHHHhhc----CHHHHHHHHhcCHHHHHH
Q 022855 2 REIMNMPVVQNLMN----NPEIMRNLIMNNPQMREI 33 (291)
Q Consensus 2 ~~mm~nP~~q~lm~----NP~~m~~mi~~nP~~~~m 33 (291)
.++++||.|+++++ ||++++.++++||++++.
T Consensus 5 ~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~ 40 (41)
T smart00727 5 ALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQL 40 (41)
T ss_pred HHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhh
Confidence 46777887777665 888888877667776653
No 5
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=95.40 E-value=0.028 Score=41.08 Aligned_cols=40 Identities=33% Similarity=0.514 Sum_probs=23.7
Q ss_pred hccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHhhhhCh
Q 022855 210 QMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNS 249 (291)
Q Consensus 210 ~mm~nP~~~~mmq~l~sNP~l~~qmi----~~nP~l~~m~~~nP 249 (291)
.+.++|.+.++-+.+.+||+++..++ .+||++.+++.+||
T Consensus 3 ~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~ 46 (59)
T PF09280_consen 3 FLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNP 46 (59)
T ss_dssp GGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTH
T ss_pred HHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCH
Confidence 46778888887777778886554443 44554444444444
No 6
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=92.78 E-value=0.22 Score=36.37 Aligned_cols=37 Identities=35% Similarity=0.653 Sum_probs=20.8
Q ss_pred hhhhCCHHHHHh---h-cCHH----HHHHHHhcCHHHHHHHhhCh
Q 022855 2 REIMNMPVVQNL---M-NNPE----IMRNLIMNNPQMREIIDRNP 38 (291)
Q Consensus 2 ~~mm~nP~~q~l---m-~NP~----~m~~mi~~nP~~~~m~~~nP 38 (291)
..+.++|.|+.| + +||+ ++++|-.+||++.++|.+||
T Consensus 2 ~~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~ 46 (59)
T PF09280_consen 2 EFLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNP 46 (59)
T ss_dssp GGGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTH
T ss_pred hHHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCH
Confidence 457777876543 2 6764 34444455666666665555
No 7
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.22 E-value=0.23 Score=48.85 Aligned_cols=49 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred HHhccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHhhhhChH-HHHhhC
Q 022855 208 LNQMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNSQ-LREMIQ 256 (291)
Q Consensus 208 m~~mm~nP~~~~mmq~l~sNP~l~~qmi----~~nP~l~~m~~~nP~-~~~~m~ 256 (291)
+.-+.++|.|+++-+.+.+||+++..++ ..||++.+++.+||+ |.++|+
T Consensus 248 l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~ 301 (378)
T TIGR00601 248 LEFLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQENPQLLQQISQHPEQFLQMLN 301 (378)
T ss_pred HHHhhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHhc
Confidence 5566688888888888888998776665 355555554444442 444443
No 8
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.94 E-value=0.9 Score=44.74 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=21.1
Q ss_pred HhhhhChHHHHhhCChHHHHhh--cCHHHHHHHHHHHHHHHHhhh
Q 022855 243 SMVDSNSQLREMIQNPEFLRQL--TNPETMQQMVTLQQFLLTQLG 285 (291)
Q Consensus 243 ~m~~~nP~~~~~m~nP~~l~~m--~NP~~mqammQiqq~~~~~~~ 285 (291)
+++++||++.+ .+++++ +||+.+|.|.+-+..|...|+
T Consensus 262 ~~vq~NP~~L~-----~lLqql~~~nP~l~q~I~~n~e~Fl~ll~ 301 (378)
T TIGR00601 262 QVVQQNPQLLP-----PLLQQIGQENPQLLQQISQHPEQFLQMLN 301 (378)
T ss_pred HHHHHCHHHHH-----HHHHHHHhhCHHHHHHHHHCHHHHHHHhc
Confidence 33445555553 334443 466666666666666666554
No 9
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=86.68 E-value=1.1 Score=43.28 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=29.0
Q ss_pred HHhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhh
Q 022855 208 LNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI 255 (291)
Q Consensus 208 m~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m 255 (291)
+.-+.+.|.|+++.+-+.+||++++-|+ +++-+.||++.+.+
T Consensus 216 l~fLr~~~qf~~lR~~iqqNP~ll~~~L------qqlg~~nP~L~q~I 257 (340)
T KOG0011|consen 216 LEFLRNQPQFQQLRQMIQQNPELLHPLL------QQLGKQNPQLLQLI 257 (340)
T ss_pred hhhhhccHHHHHHHHHHhhCHHHHHHHH------HHHhhhCHHHHHHH
Confidence 4557788899999888889999886554 44445555555444
No 10
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=74.05 E-value=7.8 Score=37.57 Aligned_cols=39 Identities=36% Similarity=0.580 Sum_probs=28.1
Q ss_pred HHhhhhChHHHHhhCChHHHHhh--cCHHHHHHHHHHHHHHHHhhh
Q 022855 242 RSMVDSNSQLREMIQNPEFLRQL--TNPETMQQMVTLQQFLLTQLG 285 (291)
Q Consensus 242 ~~m~~~nP~~~~~m~nP~~l~~m--~NP~~mqammQiqq~~~~~~~ 285 (291)
|+|+++||++.+ | +|+.+ .||+.+|.+.+-|..|...|+
T Consensus 229 R~~iqqNP~ll~----~-~Lqqlg~~nP~L~q~Iq~nqe~Fl~mln 269 (340)
T KOG0011|consen 229 RQMIQQNPELLH----P-LLQQLGKQNPQLLQLIQENQEAFLQLLN 269 (340)
T ss_pred HHHHhhCHHHHH----H-HHHHHhhhCHHHHHHHHHHHHHHHHHhh
Confidence 445566777765 3 44443 699999999999999888775
No 11
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=27.74 E-value=60 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=20.8
Q ss_pred HHHHHHHhhCChHHHHHHhhCChhH
Q 022855 217 VTQMMQSLLSNPQYMNQILGLNPQL 241 (291)
Q Consensus 217 ~~~mmq~l~sNP~l~~qmi~~nP~l 241 (291)
+|.+++-|.+||++++++...+-.|
T Consensus 2 ~Q~iV~YLv~nPevl~kl~~g~asL 26 (57)
T PF05952_consen 2 KQEIVNYLVQNPEVLEKLKEGEASL 26 (57)
T ss_pred hHHHHHHHHHChHHHHHHHcCCeeE
Confidence 4788899999999999998766554
No 12
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=23.52 E-value=32 Score=33.74 Aligned_cols=49 Identities=29% Similarity=0.562 Sum_probs=34.5
Q ss_pred Chhhh-hcCCChHHHHHHHHHhhCHHHHHHHHhhhhhhhhhccCCcccchh---hHhhhhc
Q 022855 37 NPELA-HILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNM---LRRMYET 93 (291)
Q Consensus 37 nPe~~-~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d~a~~~le~~PgG~n~---l~~~~~d 93 (291)
+|.+. ++|+|||+|.+=..+ .| +-|.||-+-+=+.+|+|+.| |+.+|+.
T Consensus 145 ~~~i~fqilsnpeflaegtai-kd-------l~npdrvligg~etpeg~~av~~l~~vyeh 197 (481)
T KOG2666|consen 145 SKGIKFQILSNPEFLAEGTAI-KD-------LFNPDRVLIGGRETPEGFQAVQALKDVYEH 197 (481)
T ss_pred CCCceeEeccChHHhcccchh-hh-------hcCCceEEECCCCChhHHHHHHHHHHHHHh
Confidence 44443 688888888763211 11 45778999999999999977 5777766
No 13
>PHA02901 virus redox protein; Provisional
Probab=22.58 E-value=1.5e+02 Score=22.70 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=18.5
Q ss_pred HhhcCHHHHHHHHhcCHHHHHHH
Q 022855 12 NLMNNPEIMRNLIMNNPQMREII 34 (291)
Q Consensus 12 ~lm~NP~~m~~mi~~nP~~~~m~ 34 (291)
-+-.|.+.++.+|.++|.-...+
T Consensus 27 ~l~eDr~~ik~~L~sqP~k~~iL 49 (75)
T PHA02901 27 YLKEDRETIRAILESQPYKKKIL 49 (75)
T ss_pred HHHhCHHHHHHHHHcCchHHHHH
Confidence 34489999999999999866554
Done!