Query 022855
Match_columns 291
No_of_seqs 250 out of 669
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_X RAD23, UV excision repa 97.2 0.00011 3.6E-09 63.4 2.4 49 208-256 25-79 (171)
2 2lnm_A Protein TIC 40, chlorop 96.5 0.0042 1.4E-07 44.5 5.2 19 3-21 7-25 (62)
3 2qsf_X RAD23, UV excision repa 96.4 0.0013 4.5E-08 56.5 2.6 38 2-39 26-72 (171)
4 2lnm_A Protein TIC 40, chlorop 95.6 0.0097 3.3E-07 42.6 3.6 40 32-71 6-45 (62)
5 2f4m_B UV excision repair prot 95.3 0.016 5.6E-07 41.6 4.0 50 209-264 5-56 (61)
6 1pve_A HHR23B, UV excision rep 95.2 0.0087 3E-07 44.4 2.3 50 209-264 7-58 (72)
7 2llw_A Heat shock protein STI1 95.0 0.017 6E-07 42.6 3.5 34 209-243 23-56 (71)
8 2llw_A Heat shock protein STI1 94.2 0.05 1.7E-06 40.1 4.2 36 36-71 18-53 (71)
9 2f4m_B UV excision repair prot 92.6 0.078 2.7E-06 38.0 2.9 8 4-11 7-14 (61)
10 1pve_A HHR23B, UV excision rep 91.4 0.25 8.5E-06 36.5 4.5 45 236-285 10-59 (72)
11 2llv_A Heat shock protein STI1 91.3 0.019 6.4E-07 42.2 -1.6 42 28-69 13-55 (71)
12 1oqy_A HHR23A, UV excision rep 87.8 0.21 7.1E-06 47.6 2.2 48 209-256 238-290 (368)
13 2llv_A Heat shock protein STI1 87.7 0.2 6.7E-06 36.7 1.5 42 4-53 19-62 (71)
14 1oqy_A HHR23A, UV excision rep 75.1 2.5 8.6E-05 40.1 4.3 21 265-285 270-290 (368)
No 1
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.24 E-value=0.00011 Score=63.36 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=37.7
Q ss_pred HHhcc-CChHHHHHHHHhhCChHHHHHHhh----CChhHHHhhhhChH-HHHhhC
Q 022855 208 LNQML-QNPAVTQMMQSLLSNPQYMNQILG----LNPQLRSMVDSNSQ-LREMIQ 256 (291)
Q Consensus 208 m~~mm-~nP~~~~mmq~l~sNP~l~~qmi~----~nP~l~~m~~~nP~-~~~~m~ 256 (291)
+..|+ ++|.|+++.+.+.+||+++..+|. +||++.+++.+||+ |.++|+
T Consensus 25 l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLn 79 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLL 79 (171)
T ss_dssp ---CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHh
Confidence 56678 999999999999999999988886 88888888777776 344443
No 2
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=96.48 E-value=0.0042 Score=44.48 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=9.5
Q ss_pred hhhCCHHHHHhhcCHHHHH
Q 022855 3 EIMNMPVVQNLMNNPEIMR 21 (291)
Q Consensus 3 ~mm~nP~~q~lm~NP~~m~ 21 (291)
.+++||.++.+|+||+++.
T Consensus 7 kl~~dPe~~~~m~dP~~~~ 25 (62)
T 2lnm_A 7 KIMENPDVAMAFQNPRVQA 25 (62)
T ss_dssp HHTTSHHHHHHTTSHHHHH
T ss_pred HHHcChHHHHHcCCHHHHH
Confidence 3445555555555555443
No 3
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=96.42 E-value=0.0013 Score=56.52 Aligned_cols=38 Identities=37% Similarity=0.492 Sum_probs=30.1
Q ss_pred hhhh-CCHHHHHhh----cCHHHHHHHHh----cCHHHHHHHhhChh
Q 022855 2 REIM-NMPVVQNLM----NNPEIMRNLIM----NNPQMREIIDRNPE 39 (291)
Q Consensus 2 ~~mm-~nP~~q~lm----~NP~~m~~mi~----~nP~~~~m~~~nPe 39 (291)
..|+ ++|.|++|. +||+++..||+ +||+|.++|.+|||
T Consensus 26 ~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe 72 (171)
T 2qsf_X 26 GSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPE 72 (171)
T ss_dssp --CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHH
T ss_pred HHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHH
Confidence 3566 889887754 89998888888 88888888888887
No 4
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=95.60 E-value=0.0097 Score=42.55 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=31.0
Q ss_pred HHHhhChhhhhcCCChHHHHHHHHHhhCHHHHHHHHhhhh
Q 022855 32 EIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTD 71 (291)
Q Consensus 32 ~m~~~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d 71 (291)
+-+.++||+..+|+||++++-+-++.+||+.+++.+.+..
T Consensus 6 ~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~ 45 (62)
T 2lnm_A 6 SKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKE 45 (62)
T ss_dssp HHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHH
T ss_pred HHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChH
Confidence 3355688888888888888888888888888888776544
No 5
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=95.33 E-value=0.016 Score=41.56 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=28.9
Q ss_pred HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhh-CChH-HHHhh
Q 022855 209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-QNPE-FLRQL 264 (291)
Q Consensus 209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m-~nP~-~l~~m 264 (291)
.-+.++|.+.++-+.+.+||+++..++ +++-+.||++.+++ +||+ |++++
T Consensus 5 ~~Lr~~Pqf~~lR~~vq~NP~~L~~lL------qql~~~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 5 EFLRNQPQFQQMRQIIQQNPSLLPALL------QQIGRENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp GGGTTCHHHHHHHHHHHHCGGGHHHHH------HHHHHHCHHHHHHHHHSHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH------HHHHhHCHHHHHHHHHCHHHHHHHH
Confidence 446677888777777777887776554 33444445444443 2443 44443
No 6
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=95.21 E-value=0.0087 Score=44.42 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=28.3
Q ss_pred HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHHhhhhChHHHHhh-CChH-HHHhh
Q 022855 209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMI-QNPE-FLRQL 264 (291)
Q Consensus 209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~m~~~nP~~~~~m-~nP~-~l~~m 264 (291)
.-+.++|.+.++-+.+.+||+++..++ +++-+.||++.+++ +||+ |++++
T Consensus 7 ~~Lr~~Pqf~qlR~~vqqNP~lL~~lL------qqL~~~NPqL~q~I~~n~e~Fl~ll 58 (72)
T 1pve_A 7 EFLRNQPQFQQMRQIIQQNPSLLPALL------QQIGRENPQLLQQISQHQEHFIQML 58 (72)
T ss_dssp GGGTTCTTTTTHHHHHTTCGGGHHHHH------HHHHTTCHHHHHHHHTTHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH------HHHHhHCHHHHHHHHHCHHHHHHHH
Confidence 456667777777777777777666554 33444444444443 3444 44444
No 7
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.017 Score=42.58 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=17.7
Q ss_pred HhccCChHHHHHHHHhhCChHHHHHHhhCChhHHH
Q 022855 209 NQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRS 243 (291)
Q Consensus 209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi~~nP~l~~ 243 (291)
..+|+||.++.+++.+++||+.+...+ +||.++.
T Consensus 23 ~~im~DP~~~~~lq~~~~NP~~~~k~~-~nP~v~~ 56 (71)
T 2llw_A 23 AAIMQDPVMQSILQQAQQNPAALQEHM-KNPEVFK 56 (71)
T ss_dssp HHHHTCTHHHHHHHHHHHCHHHHHHHH-HSHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHCHHHHHHHH-hCHHHHH
Confidence 345555555555555555555555443 3444443
No 8
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.05 Score=40.07 Aligned_cols=36 Identities=33% Similarity=0.620 Sum_probs=20.2
Q ss_pred hChhhhhcCCChHHHHHHHHHhhCHHHHHHHHhhhh
Q 022855 36 RNPELAHILNDPSTLRQTLEAARNPELMREMMRNTD 71 (291)
Q Consensus 36 ~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe~mr~~d 71 (291)
+.||+..+|+||+++.-+-++.+||+.+++.+.+.+
T Consensus 18 ~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~ 53 (71)
T 2llw_A 18 KDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPE 53 (71)
T ss_dssp HSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHH
T ss_pred cCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHH
Confidence 355555555666555555555666666666555443
No 9
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=92.61 E-value=0.078 Score=37.99 Aligned_cols=8 Identities=38% Similarity=0.534 Sum_probs=3.8
Q ss_pred hhCCHHHH
Q 022855 4 IMNMPVVQ 11 (291)
Q Consensus 4 mm~nP~~q 11 (291)
+.++|.|+
T Consensus 7 Lr~~Pqf~ 14 (61)
T 2f4m_B 7 LRNQPQFQ 14 (61)
T ss_dssp GTTCHHHH
T ss_pred HHcChHHH
Confidence 34555443
No 10
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=91.37 E-value=0.25 Score=36.52 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=27.9
Q ss_pred hCChhH---HHhhhhChHHHHhhCChHHHHh--hcCHHHHHHHHHHHHHHHHhhh
Q 022855 236 GLNPQL---RSMVDSNSQLREMIQNPEFLRQ--LTNPETMQQMVTLQQFLLTQLG 285 (291)
Q Consensus 236 ~~nP~l---~~m~~~nP~~~~~m~nP~~l~~--m~NP~~mqammQiqq~~~~~~~ 285 (291)
.++|++ |+++++||++.+ .++.. -+||+.++.+.+-++.+...|.
T Consensus 10 r~~Pqf~qlR~~vqqNP~lL~-----~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 10 RNQPQFQQMRQIIQQNPSLLP-----ALLQQIGRENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TTCTTTTTHHHHHTTCGGGHH-----HHHHHHHTTCHHHHHHHHTTHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHCHHHHH-----HHHHHHHhHCHHHHHHHHHCHHHHHHHHc
Confidence 445543 455566666663 34444 3678877777777777777663
No 11
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.019 Score=42.20 Aligned_cols=42 Identities=19% Similarity=0.551 Sum_probs=32.2
Q ss_pred HHHHHHHhhChhhhhcCCChHHHHHHHHHhhCHHHHHH-HHhh
Q 022855 28 PQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMRE-MMRN 69 (291)
Q Consensus 28 P~~~~m~~~nPe~~~~l~nP~~lrq~~~~~~nP~~~qe-~mr~ 69 (291)
|.+-+.+..||+++.+|.||++++.+-++.+||+.+++ .+.+
T Consensus 13 p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~d 55 (71)
T 2llv_A 13 PNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTD 55 (71)
T ss_dssp SSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTC
T ss_pred hHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhC
Confidence 44444466788899999999988888888889988877 6643
No 12
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=87.78 E-value=0.21 Score=47.56 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=29.1
Q ss_pred HhccCChHHHHHHHHhhCChHHHHHHh----hCChhHHHhhhhChH-HHHhhC
Q 022855 209 NQMLQNPAVTQMMQSLLSNPQYMNQIL----GLNPQLRSMVDSNSQ-LREMIQ 256 (291)
Q Consensus 209 ~~mm~nP~~~~mmq~l~sNP~l~~qmi----~~nP~l~~m~~~nP~-~~~~m~ 256 (291)
.-+-++|.|+++-+.+.+||+++..+| ..||++.+++.+||+ |.++++
T Consensus 238 ~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~ 290 (368)
T 1oqy_A 238 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN 290 (368)
T ss_dssp HHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHc
Confidence 345567777777777777777766665 356666555555543 444444
No 13
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=87.74 E-value=0.2 Score=36.65 Aligned_cols=42 Identities=21% Similarity=0.592 Sum_probs=19.7
Q ss_pred hhCCHHHHHhhcCHHHHHHHHhcCHHHHHHHhhChh-hhh-cCCChHHHHHH
Q 022855 4 IMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPE-LAH-ILNDPSTLRQT 53 (291)
Q Consensus 4 mm~nP~~q~lm~NP~~m~~mi~~nP~~~~m~~~nPe-~~~-~l~nP~~lrq~ 53 (291)
+.+||-++.+|+||+++.-|- . +.+||. ++. +++||+++.-+
T Consensus 19 l~~dP~t~~~~~DP~~~~~lq-~-------i~~NP~~i~~~~~~dPrv~~~l 62 (71)
T 2llv_A 19 LKKNPKTSEMMKDPQLVAKLI-G-------YKQNPQAIGQDLFTDPRLMTIM 62 (71)
T ss_dssp HHHSSTTHHHHHSCTHHHHHH-H-------HHHSCTTHHHHTTTCHHHHHHH
T ss_pred HHcChHHHHHhcCHHHHHHHH-H-------HHHCHHHHHHHHhhCcHHHHHH
Confidence 344455555555555443221 1 334553 345 56666655443
No 14
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=75.06 E-value=2.5 Score=40.06 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.4
Q ss_pred cCHHHHHHHHHHHHHHHHhhh
Q 022855 265 TNPETMQQMVTLQQFLLTQLG 285 (291)
Q Consensus 265 ~NP~~mqammQiqq~~~~~~~ 285 (291)
+||+.++.+.+-+..|...|+
T Consensus 270 ~nP~l~~~I~~n~~~Fl~~l~ 290 (368)
T 1oqy_A 270 ENPQLLQQISRHQEQFIQMLN 290 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHCHHHHHHHHc
Confidence 699999999999999988875
Done!