BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022859
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BD0|A Chain A, Crystal Structure Of Memo, Form Ii
pdb|3BD0|B Chain B, Crystal Structure Of Memo, Form Ii
pdb|3BD0|C Chain C, Crystal Structure Of Memo, Form Ii
pdb|3BD0|D Chain D, Crystal Structure Of Memo, Form Ii
Length = 293
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/278 (48%), Positives = 175/278 (62%), Gaps = 6/278 (2%)
Query: 5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
R ASHAGSWYT + +L +L+GWL + K P R +IAPH + +
Sbjct: 4 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 62
Query: 65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
DP+ R+F+LGPSHH +CALS+ +Y+TP+ DL +D ++ EL TG FE M +
Sbjct: 63 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQT 122
Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
DE EHS+EMHLPY AK E H I+P+LVGA++ E +G+LF+KY+ DPSN F V
Sbjct: 123 DEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 182
Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
SSDFCHWG RF Y +YD+ G I++SIE LDKMGM IIE DP +F YL +Y NTICGR
Sbjct: 183 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGR 242
Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRD 277
HPI V L+ L + FL Y QSSQC+ +D
Sbjct: 243 HPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQD 280
>pdb|3BCZ|A Chain A, Crystal Structure Of Memo
pdb|3BCZ|B Chain B, Crystal Structure Of Memo
pdb|3BCZ|C Chain C, Crystal Structure Of Memo
pdb|3BCZ|D Chain D, Crystal Structure Of Memo
Length = 293
Score = 268 bits (685), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/278 (47%), Positives = 170/278 (61%), Gaps = 6/278 (2%)
Query: 5 RRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHXXXXXXXXXXXXXFGNI 64
R ASHAGSWYT + +L +L+GWL + K P R +IAPH + +
Sbjct: 4 REASHAGSWYTASGPQLNAQLEGWLSQVQSTKRP-ARAIIAPHAGYTYCGSCAAHAYKQV 62
Query: 65 DPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICV 124
DP+ R+F+LGPSHH +CALS+ +Y+TP+ DL +D ++ EL TG FE +
Sbjct: 63 DPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGXFERXSLQT 122
Query: 125 DEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSV 182
DE EHS+E HLPY AK E H I+P+LVGA++ E +G+LF+KY+ DPSN F V
Sbjct: 123 DEDEHSIEXHLPYTAKAXESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVV 182
Query: 183 SSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGR 242
SSDFCHWG RF Y +YD+ G I++SIE LDK G IIE DP +F YL +Y NTICGR
Sbjct: 183 SSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKXGXSIIEQLDPVSFSNYLKKYHNTICGR 242
Query: 243 HPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKTKRD 277
HPI V L+ L FL Y QSSQC+ +D
Sbjct: 243 HPIGVLLNAITELQKNGXNXSFSFLNYAQSSQCRNWQD 280
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 165 YGRLFA-KYVDDPSNFFSVSSD---FCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDII 220
+ RL A +Y++ P + ++ D C + RFN + D+ H I I ALD++ M+ +
Sbjct: 130 WERLNADEYIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFIISMIRALDEV-MNKL 188
Query: 221 ETGDPD 226
+ +PD
Sbjct: 189 QRANPD 194
>pdb|3L2D|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2E|B Chain B, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|D Chain D, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2F|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2G|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2
Length = 390
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 114 TGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYV 173
+GKF+ D D ++H+ M +++E + K+ P N + + V
Sbjct: 22 SGKFKAADNFPDLSKHNNVMASQLTKELYEKYWDKVTP---------NGVTFDKCIQTGV 72
Query: 174 DDPSNFFSVSSDFCHWGSRFNYMHY 198
D+P N F C +G ++Y Y
Sbjct: 73 DNPGNKFYGKKTGCVFGDEYSYECY 97
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 77 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By
Cysteine
Length = 228
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 81 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 124
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|4ABS|C Chain C, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 229
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus
Thermophilus
Length = 228
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With
Threonine 217 Replaced By Valine
pdb|3U56|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217v Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1
Resolution
Length = 228
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 81 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVXGAVG 124
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|C Chain C, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|A Chain A, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|A Chain A, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3U4M|A Chain A, Crystal Structure Of Ribosomal Protein Tthl1 In Complex
With 80nt 23s Rna From Thermus Thermophilus
Length = 229
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With
Substitution Thr217ala
Length = 229
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|C Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 228
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 81 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 124
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2V47|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2OM7|K Chain K, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WDI|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|C Chain C, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|C Chain C, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|C Chain C, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|C Chain C, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|C Chain C, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|C Chain C, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|C Chain C, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|2X9S|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|C Chain C, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|C Chain C, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|2XQE|C Chain C, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|C Chain C, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|C Chain C, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|C Chain C, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|C Chain C, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|C Chain C, Ef-Tu Complex 3
pdb|2Y19|C Chain C, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 229
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1
In Complex With 80nt 23s Rna From Thermus Thermophilus
Length = 228
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW+ + +P+V G +
Sbjct: 81 EKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 124
>pdb|4DUC|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
pdb|4DUC|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
Length = 472
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 165 YGRLFA-KYVDDPSNFFSVSSD---FCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDII 220
+ RL A ++++ P + ++ D C + RFN + D+ H I + ALD+ M+ +
Sbjct: 131 WERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDE-AMNKL 189
Query: 221 ETGDPD 226
+ +PD
Sbjct: 190 QRANPD 195
>pdb|3M4V|A Chain A, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
pdb|3M4V|B Chain B, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 108 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 162
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 163 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 195
>pdb|3KX4|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX4|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 108 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 162
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 163 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 195
>pdb|4DUD|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUD|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUE|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
pdb|4DUE|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
Length = 471
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1SMI|A Chain A, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMI|B Chain B, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMJ|A Chain A, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|B Chain B, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|C Chain C, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|D Chain D, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
Length = 471
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|2HPD|A Chain A, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|2HPD|B Chain B, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1P0V|A Chain A, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0V|B Chain B, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|4DUF|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|C Chain C, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|D Chain D, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
Length = 471
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 165 YGRLFA-KYVDDPSNFFSVSSD---FCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDII 220
+ RL A ++++ P + ++ D C + RFN + D+ H I + ALD+ M+ +
Sbjct: 130 WERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDE-AMNKL 188
Query: 221 ETGDPD 226
+ +PD
Sbjct: 189 QRANPD 194
>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
Length = 455
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3KX5|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX5|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1P0W|A Chain A, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0W|B Chain B, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3EKB|A Chain A, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
pdb|3EKB|B Chain B, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3BEN|A Chain A, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
pdb|3BEN|B Chain B, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 108 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 162
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 163 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 195
>pdb|3KX3|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX3|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3DGI|A Chain A, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
pdb|3DGI|B Chain B, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
Length = 461
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|2BMH|A Chain A, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|2BMH|B Chain B, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2J1M|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J1M|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
Length = 455
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|2IJ2|A Chain A, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
pdb|2IJ2|B Chain B, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1P0X|A Chain A, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0X|B Chain B, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3EKF|A Chain A, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKF|B Chain B, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|2NNB|A Chain A, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
pdb|2NNB|B Chain B, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
Length = 471
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1YQP|A Chain A, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
pdb|1YQP|B Chain B, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|3EKD|A Chain A, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKD|B Chain B, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1YQO|A Chain A, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1YQO|B Chain B, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|2IJ4|A Chain A, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
pdb|2IJ4|B Chain B, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1ZO4|A Chain A, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
pdb|1ZO4|B Chain B, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
Length = 473
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 110 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 164
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 165 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 197
>pdb|1ZOA|A Chain A, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
pdb|1ZOA|B Chain B, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
Length = 473
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 110 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 164
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 165 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 197
>pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1ZO9|A Chain A, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
pdb|1ZO9|B Chain B, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
Length = 473
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 165 YGRLFA-KYVDDPSNFFSVSSD---FCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDII 220
+ RL A ++++ P + ++ D C + RFN + D+ H I + ALD+ M+ +
Sbjct: 133 WERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDE-AMNKL 191
Query: 221 ETGDPD 226
+ +PD
Sbjct: 192 QRANPD 197
>pdb|2IJ3|A Chain A, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
pdb|2IJ3|B Chain B, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|4DUB|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
pdb|4DUB|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
Length = 472
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 165 YGRLFA-KYVDDPSNFFSVSSD---FCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDII 220
+ RL A ++++ P + ++ D C + RFN + D+ H I + ALD+ M+ +
Sbjct: 131 WERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDE-AMNKL 189
Query: 221 ETGDPD 226
+ +PD
Sbjct: 190 QRANPD 195
>pdb|4DUA|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
pdb|4DUA|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
Length = 471
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 165 YGRLFA-KYVDDPSNFFSVSSD---FCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDII 220
+ RL A ++++ P + ++ D C + RFN + D+ H I + ALD+ M+ +
Sbjct: 130 WERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDE-AMNKL 188
Query: 221 ETGDPD 226
+ +PD
Sbjct: 189 QRANPD 194
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFA-KYVDDPSNFFSVSSD---FCHWGSR 192
+ + +G+ +V I V V + RL A ++++ P + ++ D C + R
Sbjct: 107 FSQQAMKGYHAMMVDIAVQLVQK-----WERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPD 226
FN + D+ H I + ALD+ M+ ++ +PD
Sbjct: 162 FNSFYRDQPHPFITSMVRALDE-AMNKLQRANPD 194
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|C Chain C, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|E Chain E, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
pdb|1ZHO|G Chain G, The Structure Of A Ribosomal Protein L1 In Complex With
Mrna
Length = 228
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LDGW + +P+V G +
Sbjct: 81 EKIKEAEEAGADYVGGEEIIQKILDGWXDFDAVVATPDVXGAVG 124
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2
Length = 229
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 2 EKIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIA 45
EKI+ A AG+ Y + + + LD W+ + +P+V G +
Sbjct: 82 EKIKEAEEAGADYVGGEEIIQKILDAWMDFDAVVATPDVMGAVG 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,437,332
Number of Sequences: 62578
Number of extensions: 337758
Number of successful extensions: 842
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 59
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)