Query 022859
Match_columns 291
No_of_seqs 126 out of 779
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01875 Memo: Memo-like prote 100.0 3.5E-79 7.6E-84 556.2 23.2 275 6-286 1-276 (276)
2 COG1355 Predicted dioxygenase 100.0 3.6E-78 7.8E-83 533.5 26.4 270 3-288 2-279 (279)
3 PRK00782 hypothetical protein; 100.0 1.6E-75 3.4E-80 529.9 30.8 263 4-288 2-266 (267)
4 cd07361 MEMO_like Memo (mediat 100.0 5.3E-74 1.1E-78 520.4 30.7 265 6-287 1-266 (266)
5 KOG3086 Predicted dioxygenase 100.0 3.9E-74 8.4E-79 494.7 25.4 285 4-289 5-295 (296)
6 cd07320 Extradiol_Dioxygenase_ 100.0 2.2E-39 4.7E-44 292.6 20.4 232 41-287 1-260 (260)
7 cd07951 ED_3B_N_AMMECR1 The N- 100.0 3.8E-32 8.3E-37 245.0 18.8 203 66-287 36-256 (256)
8 cd07952 ED_3B_like Uncharacter 100.0 7.6E-32 1.6E-36 243.1 19.0 220 42-287 2-256 (256)
9 PRK03881 hypothetical protein; 100.0 1.8E-31 3.9E-36 259.1 20.9 210 58-289 31-272 (467)
10 PRK13358 protocatechuate 4,5-d 100.0 1.8E-31 4E-36 242.3 16.8 227 42-289 7-269 (269)
11 cd07365 MhpB_like Subunit B of 100.0 1.2E-29 2.6E-34 233.6 18.4 190 65-268 39-296 (310)
12 cd07359 PCA_45_Doxase_B_like S 100.0 1.4E-27 3E-32 217.1 16.6 207 58-287 30-270 (271)
13 cd07372 2A5CPDO_B The beta sub 99.9 1.4E-25 3.1E-30 205.5 20.8 213 59-289 37-289 (294)
14 cd07370 HPCD The Class III ext 99.9 2E-25 4.4E-30 203.8 20.2 219 58-288 31-279 (280)
15 PRK13370 mhpB 3-(2,3-dihydroxy 99.9 1.2E-25 2.6E-30 207.3 18.7 189 66-268 40-296 (313)
16 cd07362 HPCD_like Class III ex 99.9 9.6E-24 2.1E-28 191.8 20.0 214 59-287 30-272 (272)
17 PRK13363 protocatechuate 4,5-d 99.9 6.5E-23 1.4E-27 190.3 20.7 226 40-290 57-334 (335)
18 cd07373 2A5CPDO_A The alpha su 99.9 7.7E-23 1.7E-27 185.9 19.2 214 58-288 28-270 (271)
19 TIGR02298 HpaD_Fe 3,4-dihydrox 99.9 2E-22 4.3E-27 184.0 21.1 202 58-269 33-270 (282)
20 cd07371 2A5CPDO_AB The alpha a 99.9 8.1E-23 1.8E-27 185.5 18.4 211 58-288 25-267 (268)
21 cd07367 CarBb CarBb is the B s 99.9 2E-22 4.3E-27 182.9 16.9 224 41-287 6-267 (268)
22 PRK13364 protocatechuate 4,5-d 99.9 1.4E-21 3.1E-26 177.5 18.3 189 64-268 44-264 (278)
23 cd07366 3MGA_Dioxygenase Subun 99.9 1.8E-21 3.8E-26 180.4 19.1 220 42-284 57-326 (328)
24 cd07368 PhnC_Bs_like PhnC is a 99.9 1.3E-21 2.8E-26 178.3 16.6 209 58-287 32-276 (277)
25 cd07369 PydA_Rs_like PydA is a 99.9 1E-20 2.3E-25 175.2 16.5 198 66-270 44-317 (329)
26 PRK13365 protocatechuate 4,5-d 99.8 5E-20 1.1E-24 167.8 17.1 207 58-288 34-276 (279)
27 cd07950 Gallate_Doxase_N The N 99.8 4.9E-20 1.1E-24 167.7 15.9 209 58-288 34-276 (277)
28 cd07949 PCA_45_Doxase_B_like_1 99.8 9.4E-20 2E-24 165.7 16.6 196 59-268 35-264 (276)
29 PRK13366 protocatechuate 4,5-d 99.8 5.6E-19 1.2E-23 161.0 17.1 185 58-255 34-254 (284)
30 PRK13367 protocatechuate 4,5-d 99.8 5.7E-19 1.2E-23 167.0 17.7 203 64-288 44-276 (420)
31 PF02900 LigB: Catalytic LigB 99.8 6.1E-20 1.3E-24 166.9 5.4 195 64-269 37-264 (272)
32 PRK13373 putative dioxygenase; 99.8 2.8E-18 6.2E-23 157.3 15.3 199 66-268 44-315 (344)
33 cd07364 PCA_45_Dioxygenase_B S 99.8 6.1E-18 1.3E-22 154.0 16.6 190 66-268 46-265 (277)
34 cd07363 45_DOPA_Dioxygenase Th 99.8 1.6E-17 3.4E-22 149.8 17.7 189 59-255 21-232 (253)
35 PRK13372 pcmA protocatechuate 99.7 1.3E-15 2.7E-20 144.6 15.3 169 65-247 192-389 (444)
36 COG3885 Uncharacterized conser 99.6 2E-14 4.4E-19 124.0 13.8 209 42-269 5-248 (261)
37 COG3384 Aromatic ring-opening 99.3 1.2E-10 2.5E-15 103.7 18.1 210 58-288 29-267 (268)
38 PRK10628 LigB family dioxygena 99.0 1.4E-07 2.9E-12 84.5 20.5 145 101-254 66-222 (246)
39 TIGR00719 sda_beta L-serine de 52.6 21 0.00046 31.1 4.2 64 147-227 7-75 (208)
40 PF10415 FumaraseC_C: Fumarase 35.9 11 0.00023 25.8 -0.3 21 43-63 4-24 (55)
41 KOG2616 Pyridoxalphosphate-dep 35.7 43 0.00093 29.8 3.3 66 42-115 169-239 (266)
42 PF06057 VirJ: Bacterial virul 32.8 49 0.0011 28.7 3.2 37 48-84 73-112 (192)
43 cd07987 LPLAT_MGAT-like Lysoph 32.6 2.4E+02 0.0051 24.0 7.6 112 37-156 18-138 (212)
44 PF08502 LeuA_dimer: LeuA allo 30.3 74 0.0016 25.4 3.8 49 236-286 52-101 (133)
45 PLN02783 diacylglycerol O-acyl 28.5 74 0.0016 29.6 3.9 87 69-156 99-219 (315)
46 TIGR02221 cas_TM1812 CRISPR-as 28.0 3.5E+02 0.0075 23.9 7.8 53 132-189 91-143 (218)
47 COG4148 ModC ABC-type molybdat 26.9 27 0.00059 32.4 0.7 54 134-191 167-227 (352)
48 TIGR02434 CobF precorrin-6A sy 24.4 3E+02 0.0065 24.6 7.0 27 164-190 90-117 (249)
49 PF13607 Succ_CoA_lig: Succiny 23.1 2.6E+02 0.0055 22.7 5.7 46 137-184 45-90 (138)
No 1
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=100.00 E-value=3.5e-79 Score=556.21 Aligned_cols=275 Identities=38% Similarity=0.611 Sum_probs=206.8
Q ss_pred ccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCCCc
Q 022859 6 RASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPK 85 (291)
Q Consensus 6 ~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~~~ 85 (291)
+|+|||+|||+|+++|+++|+.||....... +++++|+|||||.|||++|+++|+.|+..+++|||||||||++.+++
T Consensus 1 ~pa~AG~fYp~~~~~L~~~l~~~~~~~~~~~--~~~~iI~PHAGy~ySG~~aa~ay~~l~~~~~~~vvilGpsH~~~~~~ 78 (276)
T PF01875_consen 1 EPAVAGSFYPADPEELRAQLEAFLEKAPGPG--PARAIIVPHAGYVYSGPTAAHAYAALKESKPKRVVILGPSHTGYGDG 78 (276)
T ss_dssp --TTTTTSS-S-HHHHHHHHH-HHHHTS-----S-SEEEE--S-HHHHHHHHHHHHTT--TTT--EEEEEEE-SSS--SS
T ss_pred CCCcccCCCCCCHHHHHHHHHHHHhcCCCCC--CCCEEECCCccHHhHHHHHHHHHHHHhhcCCCEEEEECCCccCCCCC
Confidence 5899999999999999999999998765322 38999999999999999999999999988899999999999999999
Q ss_pred eeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcC-CCeeEEEEEeCCCCHHHHHH
Q 022859 86 CALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEG-HLIKIVPILVGAVNAENEAM 164 (291)
Q Consensus 86 ~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~-~~~~IVPi~vg~~~~~~~~~ 164 (291)
+++++.+.|+||||+++||++++++|.+..++...++..|..|||||||||||||+||+ ++++||||+||..+.+.+++
T Consensus 79 ~~~~~~~~~~TPlG~v~vD~e~~~~L~~~~~~~~~~~~~h~~EHSlEvqlPFLq~~~~~~~~~~IVPI~vg~~~~~~~~~ 158 (276)
T PF01875_consen 79 IAVSPFDSWETPLGEVPVDSELAEELAKNFPFFEFDDEAHEEEHSLEVQLPFLQYLFPDRRDFKIVPILVGDQSPETAKE 158 (276)
T ss_dssp EEE-SSSEE--SS--EEB-HHHHHHHHHTT-E-EE--HHHHH--TTGGGHHHHHHHTGGGTS-EEEEEEE-S--HHHHHH
T ss_pred eEeccCCeEECCCcccccCHHHHHHHHhcCCCcccchhhccccCcEEEHHHHHHHHhccCCceEEEEEEecCCCHHHHHH
Confidence 99999999999999999999999999998776666778899999999999999999973 24999999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhH
Q 022859 165 YGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP 244 (291)
Q Consensus 165 l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~ 244 (291)
++++|.+++++++++||+||||||||++||+.|. ..++.+..+++|+++|++|+++|+++|++.+.++++++||.+|
T Consensus 159 ~a~~L~~~~~~~~~liV~SsD~sHyg~rfg~~~~---~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~t~CG~~p 235 (276)
T PF01875_consen 159 LAEALAEYLKDEGTLIVASSDFSHYGPRFGDAPK---PEEIAEKIEALDREAIEAIEALDPEGFYEYLKETNNTACGRGP 235 (276)
T ss_dssp HHHHHHHHHTSTTEEEEEE----EEBGGGT--GG---GSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCccccccccccCCCC---CHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCceechHH
Confidence 9999999999888999999999999999998764 2344566677899999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEE
Q 022859 245 ISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAA 286 (291)
Q Consensus 245 i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~ 286 (291)
|+++|.+++.++. .++++|+|+||+|+++++++||||+|++
T Consensus 236 i~~~l~~~~~~~~-~~~~ll~Y~~S~d~~~~~~svVgYas~v 276 (276)
T PF01875_consen 236 IAVLLEAAKALGA-WKGELLDYATSGDVSGDYDSVVGYASIV 276 (276)
T ss_dssp HHHHHHHHHHHHC-EEEEEEEEEESS---STT--EEEEEEE-
T ss_pred HHHHHHHHHHcCC-CeEEEeeeccccCCCCCCCCEEeccccC
Confidence 9999999999885 4899999999999999999999999985
No 2
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=100.00 E-value=3.6e-78 Score=533.49 Aligned_cols=270 Identities=31% Similarity=0.500 Sum_probs=248.8
Q ss_pred CCcccCccccccCCCHHHHHHHHHHHHHh-cC----CCC--CCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEE
Q 022859 3 KIRRASHAGSWYTDNSKRLAEELDGWLRE-AG----LPK--SPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLL 75 (291)
Q Consensus 3 ~~R~~~~AG~~YP~~~~~L~~~l~~~~~~-~~----~~~--~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIl 75 (291)
++|+|+|||+|||+++++|.++|+.|+-. -. +.+ ..+++|+|+|||||.|||++|++.|+.|...+|+|||||
T Consensus 2 ~iR~pavAG~fYp~~~eeL~~~i~~~~~~~~~p~~l~~~~~~~~~~~~v~PHAGy~ySG~taa~~y~~l~~~~~~~vVIl 81 (279)
T COG1355 2 KIREPAVAGQFYPSDPEELLKQIESFFGHNFGPGTLPETGFDRKAIGIVVPHAGYRYSGPTAAHVYSALDEGEPDTVVIL 81 (279)
T ss_pred CccccceeeeeccCCHHHHHHHHHhhhcccCCCCCCCcccccccceEEEcCCCCcEecchhHHHHHHHhhcCCCCEEEEE
Confidence 58999999999999999999999999732 11 111 246999999999999999999999999988899999999
Q ss_pred CCCCCCCCCceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeC
Q 022859 76 GPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG 155 (291)
Q Consensus 76 Gp~H~~~~~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg 155 (291)
||||++...++++++.++|+||||+++||.|+++.|.+..++...|...|..|||||||||||||+|+ .+||||||+++
T Consensus 82 GPnHtg~g~~vsv~~~g~w~TPLG~v~vD~e~~~~l~~~~~~~~~D~~ah~~EHSiEvQlPFLqy~f~-~~fKIVPi~m~ 160 (279)
T COG1355 82 GPNHTGLGSPVSVSPEGEWETPLGDVKVDSELAEELVKHSGIIDLDELAHLYEHSIEVQLPFLQYLFG-DEFKIVPICMG 160 (279)
T ss_pred CCCCCCCCCceEEecCCccccCCCCeeeCHHHHHHHHHhcCCCCchhhhhhhhceEEeehHHHHHHcc-CCcEEEeEEEe
Confidence 99999999999999999999999999999999999999877766788899999999999999999996 48999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHh
Q 022859 156 AVNAENEAMYGRLFAKYVDDP-SNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLE 234 (291)
Q Consensus 156 ~~~~~~~~~l~~~L~~~~~~~-~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~ 234 (291)
.++.+.++++|++|.+++++. +++||+|||||||. | ++.++++|+.+|++|+++|.++|++.+.+
T Consensus 161 ~q~~~~a~~ig~~i~k~i~e~~~~liIaSSDf~HYe------p--------~~~~~~~D~~~I~~I~~~d~~g~~~~~~~ 226 (279)
T COG1355 161 MQDKEVARDIGRAIAKVIKELGDALIIASSDFTHYE------P--------QDIVRRKDRILIKAILALDLDGFYELLER 226 (279)
T ss_pred cccHHHHHHHHHHHHHHHhhcCCeEEEEecCccccC------c--------hhhhhhhHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999999999999999864 69999999999993 3 37788999999999999999999999999
Q ss_pred cCCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859 235 YDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 235 ~~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~ 288 (291)
+++++||.+||.++|.+++.+|. .++++|+|+||+|++++++++||||+++|+
T Consensus 227 ~n~t~CG~gpi~~~l~~~k~~g~-~~~~ll~ya~Sgdvtg~~~~vVgYAs~~~~ 279 (279)
T COG1355 227 TNATMCGYGPIAVLLEASKKLGA-KEAKLLDYATSGDVTGDTDSVVGYASIVFY 279 (279)
T ss_pred cCCccccccHHHHHHHHHHHcCc-ccceeecccccccccCCcccEEeeeeEEeC
Confidence 99999999999999999999986 479999999999999999999999999873
No 3
>PRK00782 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-75 Score=529.90 Aligned_cols=263 Identities=29% Similarity=0.496 Sum_probs=241.0
Q ss_pred CcccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCC
Q 022859 4 IRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYT 83 (291)
Q Consensus 4 ~R~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~ 83 (291)
+|+|+|||+|||+|+++|+++|+.||...+ ....+++|+|+|||||.|||++||++|+.+.. |++||||||||+..+
T Consensus 2 ~R~~~~AG~fYp~~~~~L~~~i~~~~~~~~-~~~~~~~~ii~PHAGy~ySG~~aa~ay~~l~~--p~~vvilGp~H~~~~ 78 (267)
T PRK00782 2 MRYPAVAGQFYPLSPEELLKMLSEFFRDLG-EESRKIIGAVVPHAGYVYSGRTAARVYAALPE--AETFVIIGPNHTGLG 78 (267)
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHhhCC-CCCCCceEEEeCCCCCcccHHHHHHHHHhcCC--CCEEEEECCCCCCCC
Confidence 799999999999999999999999997654 23356899999999999999999999999954 899999999999999
Q ss_pred CceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHH
Q 022859 84 PKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEA 163 (291)
Q Consensus 84 ~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~ 163 (291)
+++++++.+ |+||||++++|.+++++|.. .+...++.+|..|||+||||||||+++ .++++||||++|.++.+++.
T Consensus 79 ~~~av~~~~-~~TPlG~v~vD~~l~~~L~~--~~~~~~~~ah~~EHSiEvqlPFLq~~~-~~~~~iVPI~vg~~~~~~~~ 154 (267)
T PRK00782 79 SPVAVSPEG-WKTPLGDVEVDEELAKALAS--GIIDLDELAHKYEHSIEVQLPFLQYLF-GKDFKIVPICLGMQDEETAR 154 (267)
T ss_pred CCeEEecCc-ccCCCcCCcCCHHHHHHHHH--hhhccchhhhhhhceEEecHHHhhHhh-cCCCeEEEEEcCCCCHHHHH
Confidence 999998777 99999999999999999982 233446678999999999999999996 24899999999999999999
Q ss_pred HHHHHHHHhhC--CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCC
Q 022859 164 MYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICG 241 (291)
Q Consensus 164 ~l~~~L~~~~~--~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG 241 (291)
++|++|.++++ +++++||+|||||||++ ++.++++|+++|+.|+++|+++|++.+.++++++||
T Consensus 155 ~lg~~L~~~~~~~~~~vliIaSsDlSH~~~--------------~~~a~~~D~~~i~~I~~~d~~~l~~~~~~~~~~~CG 220 (267)
T PRK00782 155 EVGEAIAEAIEELGKKVVVIASSDFTHYEP--------------AERAKEKDMILIEAILDLDVDGFYDEIYRMNATACG 220 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcCcCC--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCceEC
Confidence 99999999886 67899999999999964 277899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859 242 RHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 242 ~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~ 288 (291)
.+||.++|.+++.+++ .++++|+|+||+|+++++++||||++++|+
T Consensus 221 ~~pi~~~l~~~~~~g~-~~~~ll~Y~~S~d~~~~~~~vVgYa~~~~~ 266 (267)
T PRK00782 221 YGPIAAMMTYSKKLGA-SKAELLHYATSGDVSGDTSAVVGYAAIVFR 266 (267)
T ss_pred HHHHHHHHHHHHhcCC-CeEEEeeecCccCCCCCCCccEEeeEEEEE
Confidence 9999999999999885 479999999999999999999999999985
No 4
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=100.00 E-value=5.3e-74 Score=520.36 Aligned_cols=265 Identities=41% Similarity=0.689 Sum_probs=248.3
Q ss_pred ccCccccccCCCHHHHHHHHHHHHHhcCC-CCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCCC
Q 022859 6 RASHAGSWYTDNSKRLAEELDGWLREAGL-PKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTP 84 (291)
Q Consensus 6 ~~~~AG~~YP~~~~~L~~~l~~~~~~~~~-~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~~ 84 (291)
+|+|||+|||+|+++|+++|+.|+...+. ....+++|+|+|||||.|||++|+++|+.|+..+||+||||||+|+..+.
T Consensus 1 ~~~~AG~fYp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~PHagy~ysG~~aa~ay~~l~~~~p~~vvilgP~H~~~~~ 80 (266)
T cd07361 1 PPAVAGSFYPADPEELRRQLEAFLAAAPGPPPKEPPKAIIVPHAGYVYSGPVAAHAYAALDPGKPKRVVILGPSHTGYGR 80 (266)
T ss_pred CCCccCCCCCCCHHHHHHHHHHHHHhCcccCCCCCceEEEeCCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCCCC
Confidence 58999999999999999999999987653 34568999999999999999999999999998899999999999999999
Q ss_pred ceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHH
Q 022859 85 KCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAM 164 (291)
Q Consensus 85 ~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~ 164 (291)
++++++.+.|+||||++++|++++++|.+..++...+...|..|||+||||||||++++ +++||||+||.++.+.+.+
T Consensus 81 ~~~~~~~~~~~TPlG~v~vd~~l~~~L~~~~~~~~~~~~~~~~EHs~EvqLpfLq~~~~--~~~iVPi~vg~~~~~~~~~ 158 (266)
T cd07361 81 GCALSSAGAWETPLGDVPVDRELVEELLKLGGFIVDDELAHEEEHSLEVQLPFLQYLLP--DFKIVPILVGDQSPEAAEA 158 (266)
T ss_pred ceeeCCCCCeeCCCcCCccCHHHHHHHHhcCCccccCcchhhhhceeeeHHHHHHHHcC--CCeEEEEEeCCCCHHHHHH
Confidence 99999999999999999999999999999887776666789999999999999999996 8999999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhH
Q 022859 165 YGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP 244 (291)
Q Consensus 165 l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~ 244 (291)
+|++|+++..+++++||+|||||||++ .+.++++|+++|+.|+++|+++|++.+.++++++||.+|
T Consensus 159 ~g~~l~~~~~~~~~~iV~SsDlSH~~~--------------~~~a~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~ 224 (266)
T cd07361 159 LAEALSKYLLDPDTLIVISSDFSHYGP--------------RESAERLDRKAIEAILALDPEGFYEYLRETGNTACGRGP 224 (266)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCcCC--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCceECHHH
Confidence 999999987788999999999999965 278899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859 245 ISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 245 i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
|.++|.+++.++. .++++|+|+||+++++++++||||++++|
T Consensus 225 i~~~l~~~~~~~~-~~~~ll~Y~~S~~~~~~~~~vVgYas~~~ 266 (266)
T cd07361 225 IAVLLEAAKELGA-LKAELLDYATSGDVSGDRDSVVGYASAAF 266 (266)
T ss_pred HHHHHHHHHhcCC-CEEEEeeecCcCCCCCCCCCeEeccEEeC
Confidence 9999999999884 48999999999999999999999999975
No 5
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=100.00 E-value=3.9e-74 Score=494.66 Aligned_cols=285 Identities=59% Similarity=1.008 Sum_probs=265.5
Q ss_pred CcccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCC
Q 022859 4 IRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYT 83 (291)
Q Consensus 4 ~R~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~ 83 (291)
+|+|+|||+||-++.++|.+||+.||.++.... ..+|+||+|||||.|+|++||+||+.+..+..+||+||||+|+.++
T Consensus 5 ~~~AtHAGSWYt~~~~~Ls~QL~~wL~~~~~~~-~paRaiIaPHAGY~YcG~~Aa~ay~qvdps~v~RIFILGPSHHv~l 83 (296)
T KOG3086|consen 5 VVEATHAGSWYTASGPQLSAQLEGWLSQVTLTK-GPARAIIAPHAGYTYCGSCAAYAYKQVDPSNVQRIFILGPSHHVYL 83 (296)
T ss_pred ccccccccccccCCHHHHHHHHHHHHhccCCCC-CCceEEEcCCCCcccchHHHHHHHhhcChhHeeEEEEecCcceeee
Confidence 459999999999999999999999998876433 3489999999999999999999999999999999999999999999
Q ss_pred CceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCC--eeEEEEEeCCCCHHH
Q 022859 84 PKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHL--IKIVPILVGAVNAEN 161 (291)
Q Consensus 84 ~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~--~~IVPi~vg~~~~~~ 161 (291)
++|++++.+.++||||+++||.++.++|.+...|..+|-...+.|||+|||||||.+.+...+ ++||||+||.++.++
T Consensus 84 ~~CalS~~s~yrTPLgdLkVD~~i~~eL~~tg~F~~Mdl~tde~EHSiEM~lP~lak~l~~~~~~~kivPilvg~ls~~~ 163 (296)
T KOG3086|consen 84 SKCALSSASIYRTPLGDLKVDQKICKELWATGMFERMDLDTDEAEHSIEMQLPYLAKVLESRKDTVKIVPILVGALSPSV 163 (296)
T ss_pred cchhhhhhhhhcCccccccccHHHHHHHHHcCCccccccccccchhhhhhhhHHHHHHHhhcCceEEEEeeEecccChHH
Confidence 999999999999999999999999999999988888888888999999999999998886555 999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCC
Q 022859 162 EAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICG 241 (291)
Q Consensus 162 ~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG 241 (291)
...+|+.|.++++|++++||+||||||||.||+|++|.....+|++.++.+|+..++.|+.+|++.|-+++++++|++||
T Consensus 164 e~~~g~lls~Yi~Dp~NlFvvSSDFCHWG~RF~yt~Yd~s~~~I~~sIe~lDk~gM~iiet~~pdaf~~YLk~~~NTICG 243 (296)
T KOG3086|consen 164 EQCYGKLLSKYIKDPSNLFVVSSDFCHWGRRFSYTYYDHSQGPIYESIENLDKQGMKIIETLDPDAFSEYLKKTQNTICG 243 (296)
T ss_pred HHHHHHHHHHHhcCccceEEEeccccccccccccccccCCCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhC---CC-CCceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859 242 RHPISVFLHMLGNC---ST-KIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289 (291)
Q Consensus 242 ~~~i~~~l~~~~~~---~~-~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~ 289 (291)
+.||.++|.++..+ +. +.++++|.|+||..+..-.||+|+||+....+
T Consensus 244 r~PI~v~l~a~~~~~~~~~s~~~f~fl~YaQSs~~~~~~DSSVSYAsg~~~~ 295 (296)
T KOG3086|consen 244 RHPISVILSALSHMRKAGPSKIKFKFLNYAQSSQVRSIDDSSVSYASGALTV 295 (296)
T ss_pred CccHHHHHHHHHHHHhcCCCcceEeecccccccceeeccccceeeeeeeEec
Confidence 99999999866543 22 35799999999999999999999999988754
No 6
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=100.00 E-value=2.2e-39 Score=292.58 Aligned_cols=232 Identities=24% Similarity=0.295 Sum_probs=191.2
Q ss_pred ceeeecCCchhchHHHHHH---------HHHhcCCCCCCEEEEECCCCCCCCCceeEeCCCcccc---------CCCCCC
Q 022859 41 RGVIAPHAGYSYSGRAAAY---------AFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKT---------PIGDLP 102 (291)
Q Consensus 41 ~a~I~PHag~~ysg~~aa~---------ay~~l~~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T---------PlG~~~ 102 (291)
.++++||+||.|++..+++ .++.+...+||+||||||+|....+.+++...+.|+| |+|+++
T Consensus 1 ~~~~v~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (260)
T cd07320 1 LAIIIPHGPALYAAEDTGKTRNDYQPIEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSGQWGRRPVYDVK 80 (260)
T ss_pred CCCcccCCCcchhhcccccccCchHHHHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceeccccccccCCCCCcCCC
Confidence 3689999999999998766 4455655689999999999998888899988899999 999999
Q ss_pred CcHHHHHHHHhcC--Ccee-cccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC--CHHHHHHHHHHHHHhhC--C
Q 022859 103 LDLEVIEELKATG--KFEL-MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV--NAENEAMYGRLFAKYVD--D 175 (291)
Q Consensus 103 vD~~~~~~L~~~~--~~~~-~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~--~~~~~~~l~~~L~~~~~--~ 175 (291)
+|++++++|.+.. ++.. .....|..|||+|||||||+..+ .+++||||.++.. +.+++.++|++|+++++ +
T Consensus 81 ~d~ela~~l~~~~~~~~~~~~~~~~~~~DHg~~vpl~~l~~~~--~~~piVpi~i~~~~~~~~~~~~lG~aL~~~~~~~~ 158 (260)
T cd07320 81 GDPDLAWEIAEELIKEIPVTIVNEMDGLDHGTLVPLSYIFGDP--WDFKVIPLSVGVLVPPFAKLFEFGKAIRAAVEPSD 158 (260)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEcccccCCeeecccHHHHhCCC--CCCcEEEEEeeccCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999998754 2211 12222789999999999998754 3899999999998 89999999999999983 5
Q ss_pred CCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHH---HHHhcCCCcCChhHHHHHHHHH
Q 022859 176 PSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKK---YLLEYDNTICGRHPISVFLHML 252 (291)
Q Consensus 176 ~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~---~~~~~~~~~CG~~~i~~~l~~~ 252 (291)
++++||+||||||++++|++... ......++++|+++++.|+++|.+++++ ...+.+++.||..|+.++++++
T Consensus 159 ~~vliI~SGdlsH~~~~~~~~~~----~~~~~~~~efD~~~~~~l~~~d~~~l~~~~~~~~~~~~~~~g~~~~~~~~ga~ 234 (260)
T cd07320 159 LRVHVVASGDLSHQLQGDRPSSQ----SGYYPIAEEFDKYVIDNLEELDPVEFKNMHQYLTISNATPCGFHPLLILLGAL 234 (260)
T ss_pred CcEEEEEeCccccCCCCCCcccc----cCcCcchHHHHHHHHHHHHcCCHHHHhhcChHHHhcCCCccCHHHHHHHHHhc
Confidence 78999999999999998876311 0112567899999999999999999987 4556688999999999999998
Q ss_pred hhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859 253 GNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 253 ~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
+.... +.+++.|..+. ++|||+++.|
T Consensus 235 ~~~~~--~~~~~~~~~~~-------~~vg~~~~~~ 260 (260)
T cd07320 235 DGKER--KDLFTVYGIPS-------SSTGYAAAIL 260 (260)
T ss_pred CCCcc--ceEEeecCCCC-------CCceEEEEEC
Confidence 77542 36677777763 8899999875
No 7
>cd07951 ED_3B_N_AMMECR1 The N-terminal domain, an extradiol dioxygenase class III subunit B-like domain, of unknown proteins containing a C-terminal AMMECR1 domain. This subfamily is composed of uncharacterized proteins containing an N-terminal domain with similarity to the catalytic B subunit of class III extradiol dioxygenases and a C-terminal AMMECR1-like domain. This model represents the N-terminal domain. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon, however, proteins in this subfamily do not contain a potential metal binding site and may not exhibit class III extradiol dioxygenase-like activity. The AMMECR1 protein was proposed to be a regulatory factor that is potentially involved in the development of AMME contiguous gene deletion syndrome.
Probab=100.00 E-value=3.8e-32 Score=245.03 Aligned_cols=203 Identities=22% Similarity=0.258 Sum_probs=168.8
Q ss_pred CCCCCEEEEECCCCCCCCCceeEeCCCccccCCC---------CCCCcHHHHHHHHhcC---Cc--eecccccCcccccc
Q 022859 66 PTSISRVFLLGPSHHYYTPKCALSTATVYKTPIG---------DLPLDLEVIEELKATG---KF--ELMDICVDEAEHSM 131 (291)
Q Consensus 66 ~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG---------~~~vD~~~~~~L~~~~---~~--~~~d~~~~~~EHsl 131 (291)
..+||+|||+||+|...+..+++.....|.|||| .+++|.+++++|.+.. ++ ...+...|..|||+
T Consensus 36 ~~~pd~ivvvg~h~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~d~~la~~l~~~l~~~g~~~~~~~~~~~~~DHg~ 115 (256)
T cd07951 36 AARPDTIVVVSPHAPVFRDAFAISTGGTLRGDFSRFGAPEVSFGVDLDLELVEEIAGEADKEGLPVGALGERIPELDHGT 115 (256)
T ss_pred HcCCCEEEEECCCcccccceeEeccCCceecchhhcCCCcceEeeeCCHHHHHHHHHHhhhcCCCcccccCCCCCCCchh
Confidence 3689999999999988788889988899999999 7999999999998753 22 22233447899999
Q ss_pred ccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHH
Q 022859 132 EMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSI 209 (291)
Q Consensus 132 EvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~ 209 (291)
|||||||++.+. +++||||.++..+.+++.+||++|+++++ +++++||+||||||+.... .|++ ..+.+
T Consensus 116 ~vpl~~l~~~~~--~~pvVpi~~~~~~~~~~~~lG~aL~~~~~~~~~~vlii~SgdlsH~l~~~--~p~~-----~~~~a 186 (256)
T cd07951 116 LVPLYFLRKAGS--DGKLVRIGLSGLSPEELYAFGRALAAAAEELGRRVALIASGDLSHRLTED--APGG-----YDPRG 186 (256)
T ss_pred hhhHHhhcccCC--cCCeEEEecCCCCHHHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCC--CCCC-----CCcch
Confidence 999999998753 79999999999999999999999999884 5689999999999985321 1111 12456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhc--CCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859 210 EALDKMGMDIIETGDPDAFKKYLLEY--DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 210 ~~~D~~~i~~i~~~d~~~~~~~~~~~--~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
+++|+++++.|.++|.++|+++..+. .++.||..|+.+++++++..+. +++++.|..+ +.|||+.+.+
T Consensus 187 ~~~D~~~~~~l~~~D~~~L~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~--~~~~l~y~~~--------~g~g~~v~~~ 256 (256)
T cd07951 187 PEFDAAIAEALAKGDVDALLALDPELAEEAGECGRRSWQVLAGALDGASV--KGEVLSYEGP--------FGVGYLVAVW 256 (256)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCHHHHHHHHhcChHHHHHHHHhccCCCc--cceeeeccCC--------cccCeEEEeC
Confidence 89999999999999999999875533 5688999999999999988763 7999999997 7899998753
No 8
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=100.00 E-value=7.6e-32 Score=243.12 Aligned_cols=220 Identities=17% Similarity=0.182 Sum_probs=172.3
Q ss_pred eeeecCCchhc---hH--HHHHHHHHhc--CCCCCCEEEEECCCCCCCCCceeEeCC----CccccCC----CCCCCcHH
Q 022859 42 GVIAPHAGYSY---SG--RAAAYAFGNI--DPTSISRVFLLGPSHHYYTPKCALSTA----TVYKTPI----GDLPLDLE 106 (291)
Q Consensus 42 a~I~PHag~~y---sg--~~aa~ay~~l--~~~~~~~VvIlGp~H~~~~~~~~~~~~----~~~~TPl----G~~~vD~~ 106 (291)
++++||-+..+ .. .-+.+.++.. ...+||+|||+||+|......+++... +.|.||. +.+++|.+
T Consensus 2 ~~fi~HG~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~IvvispH~~~~~~~~~i~~~~~~~g~~~~p~~~~~~~~~~d~e 81 (256)
T cd07952 2 IAVIPHGDEIIDPLDEESRKLNEAIKEEGAKNDDPDVLVVITPHGIRLSGHVAVILTEYLEGTLRTNKVLIRSKYPNDRE 81 (256)
T ss_pred eEEcCCCCccCCCCCcchHHHHHHHHHHHHHhcCCCEEEEECCCcccccCceEEeecCeeeeecccCCCceEEecCCCHH
Confidence 57788866222 21 2223344433 245799999999999988888888766 8999999 99999999
Q ss_pred HHHHHHhcC-----CceecccccCc-------cccccccchHHHHHHhcCCCeeEEEEEeCCC-CHHHHHHHHHHHHHhh
Q 022859 107 VIEELKATG-----KFELMDICVDE-------AEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-NAENEAMYGRLFAKYV 173 (291)
Q Consensus 107 ~~~~L~~~~-----~~~~~d~~~~~-------~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-~~~~~~~l~~~L~~~~ 173 (291)
++++|.+.. +....+...|. .||+.-||||||++ .|||+|.++.. +.+++.++|++|++++
T Consensus 82 la~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~------~pvV~is~~~~~~~~~~~~lG~aL~~~~ 155 (256)
T cd07952 82 LANEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLKK------RPIVLITPPRLLPREELVEFGRALGKAL 155 (256)
T ss_pred HHHHHHHHHHHcCCceeeccchhhccccCCCCCCccccccHhhCCC------CCeEEEccccCCCHHHHHHHHHHHHHHH
Confidence 999997753 22222322343 45555599999875 27999999887 9999999999999987
Q ss_pred C--CCCeEEEEeCCCCCCCC---CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHH--HhcCCCcCChhHHH
Q 022859 174 D--DPSNFFSVSSDFCHWGS---RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYL--LEYDNTICGRHPIS 246 (291)
Q Consensus 174 ~--~~~~liv~SsDlsH~g~---~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~--~~~~~~~CG~~~i~ 246 (291)
+ +++++||+||||||+.+ ++++. +.+++||+++++.|+++|.++++++. ...+++.||..|+.
T Consensus 156 ~~~~~~vliIaSGdlSH~l~~~~p~~~~----------~~a~~fD~~~~~~l~~~d~~~l~~~~~~~~~~a~~cg~~pl~ 225 (256)
T cd07952 156 EGYEKRVAVIISADHAHTHDPDGPYGYS----------PDAAEYDAAIVEAIENNDFEALLELDDELIEKAKPDSYWQLL 225 (256)
T ss_pred HhcCCcEEEEEecCccccCCCCCCCCCC----------cchHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhhhcCHHHHH
Confidence 5 46899999999999975 23322 45789999999999999999999873 34467889999999
Q ss_pred HHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859 247 VFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 247 ~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
++|++++..+. ++++++|+.+ +.|||+.+.|
T Consensus 226 ~~lga~~~~~~--~~~vl~Y~~p--------~~~g~~~a~~ 256 (256)
T cd07952 226 ILAGILESSPR--KSKVLYYEVP--------TYFGMMVALF 256 (256)
T ss_pred HHHhhccCCCc--cceEEEccCC--------CceeEEEEeC
Confidence 99999998873 7999999998 8899998764
No 9
>PRK03881 hypothetical protein; Provisional
Probab=99.98 E-value=1.8e-31 Score=259.07 Aligned_cols=210 Identities=20% Similarity=0.305 Sum_probs=172.4
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCccccCCC---------CCCCcHHHHHHHHhcC---Cc--ee
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKTPIG---------DLPLDLEVIEELKATG---KF--EL 119 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG---------~~~vD~~~~~~L~~~~---~~--~~ 119 (291)
..+|+.+. ..+||+|||+||+|......+++.....|.|||| ++++|.+++++|.+.. ++ ..
T Consensus 31 ~~a~~~~~~~l~~~~Pd~IVVispH~~~~~~~~~i~~~~~~~gdf~~fg~~~v~~~~~~d~eLA~~i~~~~~~~g~~~~~ 110 (467)
T PRK03881 31 IDALRELARRIAEKKPDTIIIISPHGPVFRDAVAISDGPRLKGDLGRFGAPEVSFSFKNDLELVEEIAEEAKKEGIPVVE 110 (467)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcccccCcEEEecCcceeeehhccCCCCccccCCCCHHHHHHHHHHHHHcCCceEe
Confidence 45555553 3489999999996665667788888889999998 8999999999997654 32 22
Q ss_pred cc-------cccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCC
Q 022859 120 MD-------ICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWG 190 (291)
Q Consensus 120 ~d-------~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g 190 (291)
.+ ...+..|||+|||||||++.++ +++||||.++..+.+++.++|++|+++++ +++++||+|||||||.
T Consensus 111 ~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~--d~pVVpis~~~~~~~~~~~lG~aL~~~~~~~~~rvliIaSGdLSH~l 188 (467)
T PRK03881 111 VDEELARKYEVSGELDHGTMVPLYFLRKAGS--DFKLVHISYGGLSPEELYKFGMAIREAAEELGRKVVLIASGDLSHRL 188 (467)
T ss_pred ecccccccccCCCCCCceEEeehhhhccccC--CCCEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCcccccC
Confidence 22 4567899999999999998753 79999999999999999999999999885 5689999999999997
Q ss_pred CC---CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHh--cCCCcCChhHHHHHHHHHhhCCCCCceEEEe
Q 022859 191 SR---FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLE--YDNTICGRHPISVFLHMLGNCSTKIKIKFLR 265 (291)
Q Consensus 191 ~~---~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~--~~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~ 265 (291)
.. +|+. +.++++|+++++.|.++|.++|+++..+ .+.+.||..|+.+++++++..+. ++++++
T Consensus 189 ~~~~p~g~~----------~~a~~fD~~ii~~i~~gD~~~L~~~~~~~~~~a~~cG~~p~~~~lga~~~~~~--~~~~l~ 256 (467)
T PRK03881 189 TPDGPYGYA----------PEGPEFDRAIVELLSKGDVEGLLSIDEELIEEAGECGLRSVLIMLGALDGYSV--KSEVLS 256 (467)
T ss_pred CCCCCCCCC----------cchHHHHHHHHHHHHcCCHHHHHhcCHHHHHhhhhcCHHHHHHHHHhccccCC--CceEEE
Confidence 32 3332 3457999999999999999999887543 35578999999999999987763 789999
Q ss_pred ecCCCCCCCCCCCeeEeeEEEEEe
Q 022859 266 YEQSSQCKTKRDSSVSYASAAAKV 289 (291)
Q Consensus 266 Y~~S~~~~~~~~~~VgYas~~~~~ 289 (291)
|+++ ++|||+++.|..
T Consensus 257 Y~~~--------~gVGYa~~~f~~ 272 (467)
T PRK03881 257 YEGP--------FGVGYGVARFEP 272 (467)
T ss_pred EeCC--------cccceEEEEEec
Confidence 9964 579999999964
No 10
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.97 E-value=1.8e-31 Score=242.33 Aligned_cols=227 Identities=18% Similarity=0.214 Sum_probs=164.4
Q ss_pred eeeecCCch-----hchHHHHHHHHHhcC----CCCCCEEEEECCCCCCC-----CCceeEeCCCccccCCCC-------
Q 022859 42 GVIAPHAGY-----SYSGRAAAYAFGNID----PTSISRVFLLGPSHHYY-----TPKCALSTATVYKTPIGD------- 100 (291)
Q Consensus 42 a~I~PHag~-----~ysg~~aa~ay~~l~----~~~~~~VvIlGp~H~~~-----~~~~~~~~~~~~~TPlG~------- 100 (291)
++++||.-. .-..+....+++.+. ..+||+|||+||+|+.. ..++++ ..++|.||+|+
T Consensus 7 ~~~~pH~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i-~~~~~~~p~gd~g~~~~~ 85 (269)
T PRK13358 7 AFATSHVLMSSKGGEEQAKRVVEGMREIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLV-GTGDSDTPYGDMDIPREL 85 (269)
T ss_pred ehcccccccCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEE-EecCCCCCccccCCCccc
Confidence 567777311 122333455666654 34899999999999844 445676 46789999998
Q ss_pred CCCcHHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeC-----CCCHHHHHHHHHHHHHh
Q 022859 101 LPLDLEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-----AVNAENEAMYGRLFAKY 172 (291)
Q Consensus 101 ~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~ 172 (291)
++.|.+++++|.+.. ++.......|..||| +++||++ ++|+.++|||||.++ .++.+++.++|++|+++
T Consensus 86 ~~g~~~LA~~l~~~~~~~~~~~a~~~~~~~DHg--~~vPl~~-l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG~al~~~ 162 (269)
T PRK13358 86 VPGHRAFAQAIALHRAADGFDLAQAEELRPDHG--VMIPLLF-MDPGRRIPVVPVYVNINTDPFPSAKRCAALGEVIRQA 162 (269)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeeccccCCCcc--hhhhHHH-hcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHH
Confidence 777777799997643 222212234889999 5777766 666558999999998 56679999999999998
Q ss_pred hC-----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHH
Q 022859 173 VD-----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISV 247 (291)
Q Consensus 173 ~~-----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~ 247 (291)
++ ++|++||+||||||+.+..++. ..++++|+++++.++++|.++|.++..+.-.+.||.+++.+
T Consensus 163 ~~~~~~~~~rvlvIaSGdlSH~l~~~~~~----------~~~~~fD~~~~~~i~~~D~~~l~~~~~~~~~~~~G~g~~~~ 232 (269)
T PRK13358 163 VEKDRPADERVAVIGTGGLSHWLGVPEHG----------EVNEDFDRMVMDALVSGDLEALVALGNEEILEQGGNGGLEI 232 (269)
T ss_pred HHhhCCCCCcEEEEecCCccCCCCCcccc----------ccHHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcCcccHHH
Confidence 74 4789999999999996532222 34589999999999999999997754433336788877743
Q ss_pred H--HHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859 248 F--LHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289 (291)
Q Consensus 248 ~--l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~ 289 (291)
. +.++..++. .++++|+|++ +++.+|||++++|.+
T Consensus 233 ~~~~~~~ga~~g-~~~~~l~Y~~------~~~~vvG~~~~~~~~ 269 (269)
T PRK13358 233 RNWIMAAAAVPG-RRGEKIYYEA------MPQWVTGMGGVQFHV 269 (269)
T ss_pred HHHHHHHhhcCC-CccceEEEEe------cHHHhhhheEEEEeC
Confidence 3 222233333 3799999999 567999999999863
No 11
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=99.97 E-value=1.2e-29 Score=233.57 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=153.7
Q ss_pred CCCCCCEEEEECCCCCCC-CC----cee----EeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccC----cccccc
Q 022859 65 DPTSISRVFLLGPSHHYY-TP----KCA----LSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVD----EAEHSM 131 (291)
Q Consensus 65 ~~~~~~~VvIlGp~H~~~-~~----~~~----~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~----~~EHsl 131 (291)
.+.+||+||||||+|+.. +. .++ ....++|+||.|.+++|.+++++|.+......++ ..+ ..|||+
T Consensus 39 ~~~~PD~iVIigphH~~~f~~~~~p~f~i~~a~~~~gd~~~p~g~~~~d~eLA~~L~~~~~~~g~d-~a~~~~~~lDHg~ 117 (310)
T cd07365 39 AAFDPELVVLFAPDHYNGFFYDLMPPFCIGTAATAVGDYGTLAGPLNVPRDLAEDLARHVLDSGID-VAISHRMQVDHGF 117 (310)
T ss_pred HHcCCCEEEEEcCCcccccccccCCceEeeccCccccccccCCCCCCCCHHHHHHHHHhhhhcCCC-hhhccCCCCCcch
Confidence 356799999999999985 44 233 3346899999999999999999998765322222 233 389999
Q ss_pred ccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCC--------------
Q 022859 132 EMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWG-------------- 190 (291)
Q Consensus 132 EvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g-------------- 190 (291)
|||||||++.++ +++||||.++. .+.++|.+||++|+++++ ++|++||+|||||||.
T Consensus 118 ~VPL~fL~~~~~--~~pVVPI~vn~~~~P~~s~~r~~~lG~al~~ai~~~d~rV~VIaSGdLSH~~~~~~~~~~d~~~~~ 195 (310)
T cd07365 118 TQPLEELFGGLD--RYPVIPIFVNSVAPPLAPMRRARALGEAVGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAE 195 (310)
T ss_pred HhhHHHHhCCCC--CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcccCCCchhhhhcccHHHHH
Confidence 999999998763 68999999999 899999999999999886 5689999999999993
Q ss_pred -----------------------------CCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCC
Q 022859 191 -----------------------------SRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNT 238 (291)
Q Consensus 191 -----------------------------~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~ 238 (291)
.++||.| .+++||+++++.+.++|++++.++..+. +..
T Consensus 196 ~l~~~d~~~~~~~~~~~~~i~~~~~~~~~gp~~~~p----------~~~~fD~~~l~~~~~gd~~~l~~~~~~~~~~~aG 265 (310)
T cd07365 196 RLIAGRNPTPEARAARQQRVIAAAKAFAAGDSTLMP----------LNPEWDRAFLDLLASGDLAALDAMTNDEIAAQAG 265 (310)
T ss_pred HHHhcccchHHHHHHHHhhhhhhhhhcccCcccCCC----------CCHHHHHHHHHHHHcCCHHHHHcCCHHHHHHHhc
Confidence 2344443 3479999999999999999999886653 567
Q ss_pred cCCh--hHHHHHHHHHhhCCCCCceEEEeecC
Q 022859 239 ICGR--HPISVFLHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 239 ~CG~--~~i~~~l~~~~~~~~~~~~~ll~Y~~ 268 (291)
.||. ....++++++...+. .+.+.+.|+.
T Consensus 266 ~~g~Ei~~w~~~~gal~~~~~-~~~~~~~y~p 296 (310)
T cd07365 266 NSAHEVRTWVAAFAALAAAGR-YRAESRYYRP 296 (310)
T ss_pred cccHHHHHHHHHHHHhhhccC-ceeeeEEEeE
Confidence 8999 888888888876654 4788999885
No 12
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=99.95 E-value=1.4e-27 Score=217.14 Aligned_cols=207 Identities=20% Similarity=0.213 Sum_probs=154.8
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCC-----ceeEeC--------CCccccCCCCCCCcHHHHHHHHhcC---Cc
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTP-----KCALST--------ATVYKTPIGDLPLDLEVIEELKATG---KF 117 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~-----~~~~~~--------~~~~~TPlG~~~vD~~~~~~L~~~~---~~ 117 (291)
..+|+.+. ..+||+||||||+|+..+. .+++.. ...|.||.+++++|.+++++|.+.. ++
T Consensus 30 ~~~l~~~~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~elA~~i~~~~~~~g~ 109 (271)
T cd07359 30 FAAFARIRDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGPDEGWLGIPRAPVPGDADLARHLLAGLVEDGF 109 (271)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCCccccccCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 45555553 3589999999999988753 233322 1116999999999999999998753 33
Q ss_pred eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859 118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH 188 (291)
Q Consensus 118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH 188 (291)
..........|||++|||+||+... +++||||.|+. .+.+++.+||++|+++++ +++++||+||||||
T Consensus 110 ~~a~~~~~~lDHg~~vpL~~l~~~~---~~pvVpvsv~~~~~~~~~~~~~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH 186 (271)
T cd07359 110 DVAFSYELRLDHGITVPLHFLDPDN---DVPVVPVLVNCVTPPLPSLRRCYALGRALRRAIESFPGDLRVAVLGTGGLSH 186 (271)
T ss_pred CeeccCCCCCCcchhhHHHHhcCCC---CCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccC
Confidence 2211122448999999999988654 79999999977 367899999999999875 56899999999999
Q ss_pred CCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCC--hhHHHHHHHHHhhCCCCCceEE
Q 022859 189 WGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICG--RHPISVFLHMLGNCSTKIKIKF 263 (291)
Q Consensus 189 ~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG--~~~i~~~l~~~~~~~~~~~~~l 263 (291)
+.+. .+++ ..+++||+++++.|.++|.++|++...+. +...|| ..+..++++++... ++++
T Consensus 187 ~l~~---~~~g-------~~~~~fD~~~~~~l~~~d~~~l~~~~~~~~~~~ag~~~~e~~~~~~~~GA~~~~----~~~~ 252 (271)
T cd07359 187 WPGG---PRHG-------EINEEFDREFLDLLERGDLEALLKATTEETLEEAGNGGHEILNWIAAAGALGEA----PGEV 252 (271)
T ss_pred CCCC---cccc-------ccCHHHHHHHHHHHHhCCHHHHHhcCHHHHHHHcCCCcHHHHHHHHHHHhhccC----ccce
Confidence 9642 1111 23579999999999999999987664332 446799 66777777776543 4789
Q ss_pred EeecCCCCCCCCCCCeeEeeEEEE
Q 022859 264 LRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 264 l~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
++|+... ++.|||+.+.+
T Consensus 253 ~~ye~~~------~~~~G~~~~~~ 270 (271)
T cd07359 253 LYYEPVP------EWNTGMGFAVL 270 (271)
T ss_pred eEEEEch------hhhhhheeeee
Confidence 9999963 27899998765
No 13
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=99.94 E-value=1.4e-25 Score=205.46 Aligned_cols=213 Identities=9% Similarity=0.069 Sum_probs=159.4
Q ss_pred HHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCccccCCC------------CCCCcHHHHHHHHhcC---Ccee
Q 022859 59 YAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKTPIG------------DLPLDLEVIEELKATG---KFEL 119 (291)
Q Consensus 59 ~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG------------~~~vD~~~~~~L~~~~---~~~~ 119 (291)
.+|+.+. +.+||+|||++|+|..... ..+.....++..+. +++.|.+++++|.+.. ++..
T Consensus 37 ~a~~~~~~~i~~~~Pd~IVViSpHw~~~~~-~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~ 115 (294)
T cd07372 37 WAYERARESIEALKPDVLLVHSPHWITSVG-HHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVT 115 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcccccC-eeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCCCe
Confidence 5565553 5689999999997665543 32232222221111 2578999999997643 3322
Q ss_pred --cccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCC--------HHHHHHHHHHHHHhhC--CCCeEEEEeCCCC
Q 022859 120 --MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVN--------AENEAMYGRLFAKYVD--DPSNFFSVSSDFC 187 (291)
Q Consensus 120 --~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~--------~~~~~~l~~~L~~~~~--~~~~liv~SsDls 187 (291)
.+......||+.-|+|-||+ |+.++|||+|.++.++ .+++++||++|+++++ ++|++||+|+|||
T Consensus 116 ~~~~~~~~~LDHGt~vPL~fl~---p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~al~~~~~RV~vIaSG~LS 192 (294)
T cd07372 116 KMMRNPRFRVDYGTITTLHMIR---PQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREAIRKTGRRAVLLASNTLS 192 (294)
T ss_pred eeccCCCCCCCchHHHHHHHhC---CCCCCcEEEEecCcccccccccCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCccc
Confidence 23445679999999999975 4358999999987644 6889999999999886 5789999999999
Q ss_pred CCC----C--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--CC-CcCChhHHHHHHHHHhhCCCC
Q 022859 188 HWG----S--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--DN-TICGRHPISVFLHMLGNCSTK 258 (291)
Q Consensus 188 H~g----~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~~-~~CG~~~i~~~l~~~~~~~~~ 258 (291)
|+. + ++|+.++.+ + ...++++|+++++.+.++|.++|+++..+. ++ ..||..++..++.++...+
T Consensus 193 H~l~~~~~~~p~~~~~~~~---~-~~~~~~fD~~vl~~l~~gd~~~l~~~~~~~~~~A~ge~g~~~~~~~~ga~~~~~-- 266 (294)
T cd07372 193 HWHFHEEPAPPEDMSKEHP---E-TYAGYQWDMRMIELMRQGRMKEVFRLLPQFIEEAFAEVKSGAFTWMHAAMQYPE-- 266 (294)
T ss_pred ccCccCCCCCccccccccc---c-chhHHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhccccchHHHHHHHHhhcCCC--
Confidence 994 2 344443211 0 016789999999999999999999987766 44 6899999999999997766
Q ss_pred CceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859 259 IKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289 (291)
Q Consensus 259 ~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~ 289 (291)
.++++++|+.+ +.|||+.+.|.+
T Consensus 267 ~~~~vlsYegp--------fGvGy~va~~~~ 289 (294)
T cd07372 267 LAAELHGYGTV--------IGTGNAVMEWNL 289 (294)
T ss_pred cCceEeeccCC--------cccCcEEEEEEE
Confidence 47999999998 899999998854
No 14
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=99.94 E-value=2e-25 Score=203.80 Aligned_cols=219 Identities=12% Similarity=0.111 Sum_probs=153.8
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCcccc-------CC------CCCCCcHHHHHHHHhcCCceec
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKT-------PI------GDLPLDLEVIEELKATGKFELM 120 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T-------Pl------G~~~vD~~~~~~L~~~~~~~~~ 120 (291)
..+++.+. ..+||+|||++|+|... ..+.+......++ |. -+.+.|.+++++|.+...-..+
T Consensus 31 ~~~~~~~~~~l~~~~Pd~ivviS~H~~~~-~~~~i~~~~~~~g~~~~~g~p~~~~~i~~~~~gd~ela~~i~~~~~~~g~ 109 (280)
T cd07370 31 IDGLKEIGRRARELGVDTIVVFDTHWLVN-AGYHINANARFSGLFTSNELPHFIADMPYDYAGDPELAHLIAEEATEHGV 109 (280)
T ss_pred HHHHHHHHHHhhHcCCCEEEEECCCcccc-cceeEeccCCCCceecCCCCCchhcCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 34555553 34899999999854343 2233332222222 21 1488999999999875532223
Q ss_pred ccccCccccccccchHHH---HHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCC---
Q 022859 121 DICVDEAEHSMEMHLPYL---AKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGS--- 191 (291)
Q Consensus 121 d~~~~~~EHslEvqlPfL---~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~--- 191 (291)
+...| .||++|++++|+ ++++|+.+++||||.++. .+.+++.+||++|+++++ +++++||+||||||+..
T Consensus 110 ~~~~~-~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~~~~~~~~~~lG~al~~~~~~~~~~v~iIaSG~lsH~l~~~~ 188 (280)
T cd07370 110 KTLAH-EDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWCTHDIEESRRLGEAIRRAIAASDRRVALLASGSLSHRFWPNR 188 (280)
T ss_pred Ceeee-cCCCCCCCeeHhhHHHHhCCCCCceEEEEeecCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeccccccCccCC
Confidence 43345 789999999997 888875589999999954 789999999999999875 56899999999999853
Q ss_pred CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHHHHHHHhhCCC---CCceEEEe-ec
Q 022859 192 RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCST---KIKIKFLR-YE 267 (291)
Q Consensus 192 ~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~~l~~~~~~~~---~~~~~ll~-Y~ 267 (291)
++++... +.......+++||+++++.|+++|.++++++..+.....||..++..+|.++..+|. ..+.++++ |+
T Consensus 189 ~~~~~~~--~~~~~~p~~~~fD~~~~~~i~~gD~~~L~~~~~~~~~~~~g~~g~~~~l~l~~alG~~~~~~~~~~~~~ye 266 (280)
T cd07370 189 ELEAHED--PFTISSPFNRQVDLRVLELWKEGRHAEFLDMLPDYARRCAGEGGMHDTAMLFGALGWDDYDGKAEVVTEYF 266 (280)
T ss_pred Ccccccc--ccccCChhHHHHHHHHHHHHHcCCHHHHHHhCHHHHHHhCccCChHHHHHHHhhhCccccccceeEecccC
Confidence 2233200 000113578999999999999999999998866554466777666666666655543 23467766 98
Q ss_pred CCCCCCCCCCCeeEeeEEEEE
Q 022859 268 QSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 268 ~S~~~~~~~~~~VgYas~~~~ 288 (291)
++ ++|||+.+.|.
T Consensus 267 ~~--------~g~g~~v~~~~ 279 (280)
T cd07370 267 PS--------SGTGQVNVWFP 279 (280)
T ss_pred CC--------CccceEEEEec
Confidence 87 88999998773
No 15
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=99.94 E-value=1.2e-25 Score=207.30 Aligned_cols=189 Identities=15% Similarity=0.192 Sum_probs=148.1
Q ss_pred CCCCCEEEEECCCCCCC-CC----ceeE----eCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchH
Q 022859 66 PTSISRVFLLGPSHHYY-TP----KCAL----STATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLP 136 (291)
Q Consensus 66 ~~~~~~VvIlGp~H~~~-~~----~~~~----~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlP 136 (291)
+.+||+||||||+|+.. +. .+++ ...++|.||.|.+++|.+++++|.+......+| ..+ .|++|++++
T Consensus 40 ~~~PD~iVIigpdH~~~f~~d~~P~f~i~~~~~~~gd~~~~~g~~~~d~eLA~~i~~~~~~~g~d-~a~--~~~~~lDHG 116 (313)
T PRK13370 40 AFDPELVVLFAPDHYNGFFYDVMPPFCIGVSATAVGDYGTAAGPLPVPSDLAEALAEAVLDSGID-VAV--SYRMQVDHG 116 (313)
T ss_pred HhCCCEEEEEcCCcccccccccCCceEeccCCCcCcccccCCCCCCCCHHHHHHHHHHhHhcCCC-hhh--cCCcCCCEe
Confidence 46799999999999988 44 2333 335899999999999999999998765333333 233 489999999
Q ss_pred HHH---HHhcC-CCeeEEEEEeC-----CCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCC--------------
Q 022859 137 YLA---KVFEG-HLIKIVPILVG-----AVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGS-------------- 191 (291)
Q Consensus 137 fL~---~~~~~-~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~-------------- 191 (291)
|++ +++++ .+++||||.++ ..+.+++.+||++|+++++ ++|++||+|||||||.+
T Consensus 117 ~~vPL~~l~~~~~~~pVVpI~vn~~~~p~~s~~r~~~lG~aI~~ai~~~d~rVlvIaSGdLSH~~~~~~~~~~d~~~~er 196 (313)
T PRK13370 117 FAQPLEFLLGGLDAYPVIPVFINSVAAPLPPFRRVRLLGEAVGRFLATLDKRVLFLGSGGLSHDPPVPELATADPEVRER 196 (313)
T ss_pred HHHHHHHhcCCCCCceEEEEeecCCCCCcCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcCCCchHhHhhccHHHHHH
Confidence 988 77763 24899999999 6788999999999999886 67899999999999832
Q ss_pred -----------------------------CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCc
Q 022859 192 -----------------------------RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTI 239 (291)
Q Consensus 192 -----------------------------~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~ 239 (291)
++||. ..+++||+++++.+.++|.+++.++..+. ....
T Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~----------p~~~~~D~~~l~~l~~gd~~~l~~~~~~~~~~~aG~ 266 (313)
T PRK13370 197 LIAGRNPTPEERAARQQRVIAAARIFAAGQSALH----------PLNPEWDRAFLDLLESGDLAALDAWTNEEITREAGK 266 (313)
T ss_pred HHccCCccHHHHHHHHhhHHhhhhhcccCcccCC----------CCCHHHHHHHHHHHHcCCHHHHhcCCHHHHHHHhcc
Confidence 22333 34579999999999999999999876544 3678
Q ss_pred CC--hhHHHHHHHHHhhCCCCCceEEEeecC
Q 022859 240 CG--RHPISVFLHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 240 CG--~~~i~~~l~~~~~~~~~~~~~ll~Y~~ 268 (291)
|| ..+..++++++...+. .+.+...|+-
T Consensus 267 ~g~E~r~w~~~~gal~~~~~-~~~~~~~y~p 296 (313)
T PRK13370 267 SAHEIRTWVAAFAALSAFGP-YRAEGRYYRP 296 (313)
T ss_pred chHHHHHHHHHHHHHhhcCC-ceeeeeeeeE
Confidence 99 8888888888855443 3677888874
No 16
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=99.92 E-value=9.6e-24 Score=191.85 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=157.8
Q ss_pred HHHHhcC----CCCCCEEEEECCCCCCCCCce--eEeC----CCc-------cccCCCCCCCcHHHHHHHHhcC---Cce
Q 022859 59 YAFGNID----PTSISRVFLLGPSHHYYTPKC--ALST----ATV-------YKTPIGDLPLDLEVIEELKATG---KFE 118 (291)
Q Consensus 59 ~ay~~l~----~~~~~~VvIlGp~H~~~~~~~--~~~~----~~~-------~~TPlG~~~vD~~~~~~L~~~~---~~~ 118 (291)
.+|+.+. ..+||+|||++|+|....... ..+. .+. ++-++ +++.|.+++++|.+.. ++.
T Consensus 30 ~a~~~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~y-~~~g~~~LA~~i~~~l~~~Gi~ 108 (272)
T cd07362 30 KGMKEIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPY-DYPGDPELGRLLVEEGQEAGLR 108 (272)
T ss_pred HHHHHHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCchhhcccc-CCCCCHHHHHHHHHHHHHcCCc
Confidence 5666653 358999999999776654111 1111 111 11122 6889999999997753 333
Q ss_pred e--cccccCccccccccchHHHHHHhcCCCeeEEEEEeCC--CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCCC
Q 022859 119 L--MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA--VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSR 192 (291)
Q Consensus 119 ~--~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~--~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~~ 192 (291)
. ..+.....||+.-|+|-||. |+.+++||||.++. .+.+++.+||++|+++++ +++++||+|+|+||....
T Consensus 109 ~~~~~~~~~~lDHG~~vPL~~l~---p~~~iPVV~vs~~~~~~~~~~~~~lG~ai~~al~~~~~rv~ii~SG~lsH~l~~ 185 (272)
T cd07362 109 VKAVNDPTYIWDYGTVVPLRYLN---PNKDIPVVSISACWTAASLEESYTWGEVIGKALLESDKRVVFLASGSLSHNLVR 185 (272)
T ss_pred eeeccCCCCCCCcchHHHHHHhC---CCCCCcEEEEeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEEEeCcccccCCC
Confidence 2 12334679999999999865 44589999999986 789999999988888776 589999999999999853
Q ss_pred CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--CCC-cCChhHHHHHHHHHhhCCCCCceEEEeecCC
Q 022859 193 FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--DNT-ICGRHPISVFLHMLGNCSTKIKIKFLRYEQS 269 (291)
Q Consensus 193 ~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~~~-~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S 269 (291)
.+..+.+. ..--...+++||+++++.++++|.++++++..+. +.. .||..++.+|+.+++..+ .+.++++|+++
T Consensus 186 ~~~~~~g~-~~~~~~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~A~~e~g~~~~~~~~g~~~g~~--~~~~v~sYe~~ 262 (272)
T cd07362 186 GPEAEEGM-NHYPSLAEQQMDRRFIQLLREGQFQEACNMLPQYARAAGVESGGRHLTVMLGVMQGWG--KVAELHGYGPS 262 (272)
T ss_pred CCCCcccc-cCCCChhHHHHHHHHHHHHHcCCHHHHHHhCHHHHHHhcCCcccHHHHHHHHHhcCCc--ccceeccCCCC
Confidence 32211010 0000257889999999999999999999987765 445 999999999999998765 47899999998
Q ss_pred CCCCCCCCCeeEeeEEEE
Q 022859 270 SQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 270 ~~~~~~~~~~VgYas~~~ 287 (291)
+.|||+.+.|
T Consensus 263 --------~G~G~~va~~ 272 (272)
T cd07362 263 --------SGTGNAVMTF 272 (272)
T ss_pred --------CCcCeeEEEC
Confidence 8899998765
No 17
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.91 E-value=6.5e-23 Score=190.29 Aligned_cols=226 Identities=15% Similarity=0.206 Sum_probs=164.7
Q ss_pred cceeeecCCchhchHHHHHHHHHhc----CCCCCCEEEEECCCCCCCC-----CceeEeCCCccccC-------------
Q 022859 40 VRGVIAPHAGYSYSGRAAAYAFGNI----DPTSISRVFLLGPSHHYYT-----PKCALSTATVYKTP------------- 97 (291)
Q Consensus 40 ~~a~I~PHag~~ysg~~aa~ay~~l----~~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~~TP------------- 97 (291)
...-|.|..+=....++. .+|..+ .+.+||+|||+||+|...| +.+++.....+..+
T Consensus 57 ~~~~~~~e~~~~~~~~~~-~a~~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~ 135 (335)
T PRK13363 57 LEEQITPEERTERHAACE-AAIERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPG 135 (335)
T ss_pred hhcccCcccccchHHHHH-HHHHHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhcccccccccc
Confidence 334455555444444443 355444 3578999999999995553 45666655444432
Q ss_pred ------------CCCCCCcHHHHHHHHhcC---Cceec--ccc--cCccccccccchHHHHHHhcCCCeeEEEEEeCC--
Q 022859 98 ------------IGDLPLDLEVIEELKATG---KFELM--DIC--VDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-- 156 (291)
Q Consensus 98 ------------lG~~~vD~~~~~~L~~~~---~~~~~--d~~--~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-- 156 (291)
-+.++.|.+++++|.+.. ++... +.. .+..||++-+++ ++++|+.+++||||.++.
T Consensus 136 ~~~~~~~~~p~~~~~~~gd~eLA~~I~~~l~~~G~d~~~~~~~~~~~glDHG~~~pl---~~l~p~~dipVVpIsl~~~~ 212 (335)
T PRK13363 136 VKAAMPGYMPDAETTYPVVPELARHMIRRLVDDGFDITALDRLPDGEGEGHAFGFVH---RQLMKDNVLPTVPVLVNTFY 212 (335)
T ss_pred ccccccccCCCCCcCCCCCHHHHHHHHHHHHHcCCCeeeecccccccCCCccchhhH---HHhcCCCCCcEEEEEeccCC
Confidence 255788999999998754 33221 111 123799954443 345666689999999983
Q ss_pred ----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHH
Q 022859 157 ----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAF 228 (291)
Q Consensus 157 ----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~ 228 (291)
++.+++.+||++|+++++ +++++||+||||||+.. +++||+++++.|+++|.+++
T Consensus 213 ~P~~~s~~~~~~lG~aL~~~i~~~~~d~rVlIIaSGdLSH~l~-----------------~~efD~~~l~~l~~~D~~~L 275 (335)
T PRK13363 213 PPNQPTPRRCIALGRSLRRAIRSWPEDARVAVIASGGLSHFVI-----------------DEELDRLIIDAIRAKDFAAL 275 (335)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCc-----------------HHHHHHHHHHHHHcCCHHHH
Confidence 677899999999999875 37899999999999942 37999999999999999999
Q ss_pred HHHHHhc-CCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEEec
Q 022859 229 KKYLLEY-DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAKVD 290 (291)
Q Consensus 229 ~~~~~~~-~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~~ 290 (291)
+++..+. ++..||..+..++++++..++ .++++++|.-.....+. ..|||+.+.+.-+
T Consensus 276 ~~~~~~~~~aG~~eir~wi~~~GAl~~~~--~~~evlsY~p~~r~e~~--tg~g~~~a~~~~~ 334 (335)
T PRK13363 276 ASLDEAILQSGTSEIKNWIAVAGALDDAG--LDMTWVDYVPCYRTEAG--TGTGMGFAAWRTD 334 (335)
T ss_pred HccCHHHHHhCchhHHHHHHHHHhhccCC--CCceEEEEEeeccCCCC--cceEEEEEEEecC
Confidence 9886544 677899999999999998875 47999999877544444 7899999888654
No 18
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=99.91 E-value=7.7e-23 Score=185.95 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=158.1
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCC--C---cccc--CCC----CCCCcHHHHHHHHhcC---Ccee
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTA--T---VYKT--PIG----DLPLDLEVIEELKATG---KFEL 119 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~--~---~~~T--PlG----~~~vD~~~~~~L~~~~---~~~~ 119 (291)
..+|+.+. +.+||+|||++|+|.......++... . ..+| +|| .++.|++++++|.+.. ++..
T Consensus 28 ~~a~~~lg~~l~~~~Pd~IvviS~Hw~~~~~~~~v~~~~~~g~~~~~~~~df~g~p~~~~g~~eLA~~i~~~~~~~gi~~ 107 (271)
T cd07373 28 AAATRQAGKALAASRPDVVLVYSTQWFAVLDQQWLTRPRSEGVHVDENWHEFGELPYDIRSDTALAEACVTACPEHGVHA 107 (271)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCcccccceeEeeccccccccccChhHhcCcccccCCCHHHHHHHHHHHHHCCCcE
Confidence 45666654 35899999999977764444444320 0 1111 222 4788999999997643 3322
Q ss_pred --cccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhCC--CCeEEEEeCCCCCCCCCCC
Q 022859 120 --MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVDD--PSNFFSVSSDFCHWGSRFN 194 (291)
Q Consensus 120 --~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~~--~~~liv~SsDlsH~g~~~g 194 (291)
.+......||+.-|+|-||++-. .++||||+.++. .+.+++.+||++|++++++ +|++||+|+|+||+..+-+
T Consensus 108 ~~~~~~~~~lDHG~~vPL~~l~~~~--~~iPvV~~s~~~~~~~~~~~~lG~al~~~l~~~~~rV~iIgSG~lSH~L~~~~ 185 (271)
T cd07373 108 RGVDYDGFPIDTGTITACTLMGIGT--EALPLVVASNNLYHSGEITEKLGAIAADAAKDQNKRVAVVGVGGLSGSLFREE 185 (271)
T ss_pred EEecCCCCCCcchhHHHHHHHcccC--CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecccccCcCcCC
Confidence 33323478999999999986643 489999999977 7889999999999987775 8999999999999974322
Q ss_pred Cc---cCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHHHHHHHHHhhCCCCCceEEEeecC
Q 022859 195 YM---HYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 195 ~~---p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~ 268 (291)
+. |.+ ..+.+++||+++++.+.++|.++++++..+. .-+.||..|+.++++++..... ++++++|+.
T Consensus 186 ~~~~~~~~-----~~p~~~~FD~~~~~~l~~gd~~~ll~~~~~~~~~~~~~~g~~pl~~~~Ga~~~~~~--~~~~l~ye~ 258 (271)
T cd07373 186 IDPREDHI-----ANEEDDKWNRRVLKLIEAGDLPALREAMPVYAKAARVDMGFKHLHWILGALGGKFS--GANVLGYGP 258 (271)
T ss_pred CcCCCCCc-----cCccHHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccCChHHHHHHHHhcCCCcc--CcceeeccC
Confidence 11 111 1256789999999999999999999864332 3468999999999999977552 478999998
Q ss_pred CCCCCCCCCCeeEeeEEEEE
Q 022859 269 SSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 269 S~~~~~~~~~~VgYas~~~~ 288 (291)
+ +.|||+.+.|.
T Consensus 259 ~--------~G~G~~va~f~ 270 (271)
T cd07373 259 S--------YGSGAAVVEFR 270 (271)
T ss_pred C--------cccCeEEEEEe
Confidence 7 88999999885
No 19
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=99.90 E-value=2e-22 Score=184.00 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=148.5
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeCCCcccc---CCC----------CCCCcHHHHHHHHhcC---Cc
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALSTATVYKT---PIG----------DLPLDLEVIEELKATG---KF 117 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T---PlG----------~~~vD~~~~~~L~~~~---~~ 117 (291)
..+++.+. ..+||+|||++|+|..... +.++.....+| .+| +.+.|.+++++|.+.. ++
T Consensus 33 ~~al~~l~~~l~~~~Pd~IVViS~H~~~~~~-~~i~~~~~~~g~~~~~g~p~~l~~~~y~~~gd~eLA~~i~~~~~~~gi 111 (282)
T TIGR02298 33 IDGHKEISRRAKEMGVDTIVVFDTHWLVNSG-YHINCNDQFSGSYTSHELPHFIQDLRYDYPGNPALGQLIADEAQEHGV 111 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcCCC-eEEecCCCCcceecCCCCChhhhCceeeCCCCHHHHHHHHHHHHHCCC
Confidence 45565553 3589999999997766533 33333222222 222 2778999999997743 33
Q ss_pred eec--ccccCccccccccchHHHHHHhcCCCeeEEEEEeC--CCCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCC
Q 022859 118 ELM--DICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG--AVNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGS 191 (291)
Q Consensus 118 ~~~--d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg--~~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~ 191 (291)
... +......||+.-|+|-||. |+.++|||||.++ ..+.+++.+||++|+++++ +++++||+|+|+||...
T Consensus 112 ~~~~~~~~~~~lDHG~~vPL~~l~---p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~rV~iIaSG~lSH~L~ 188 (282)
T TIGR02298 112 KTLAHQVPSLGLEYGTLVPMRYMN---EDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDGRVAVLASGSLSHRFW 188 (282)
T ss_pred ceeeccCCCCCCCeehHhHHHHhC---CCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEecccceecC
Confidence 321 3445679999999999965 4457999999987 5688999999999999975 57999999999999986
Q ss_pred C------CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHHHHHHHHHhhCCCCCceE
Q 022859 192 R------FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPISVFLHMLGNCSTKIKIK 262 (291)
Q Consensus 192 ~------~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i~~~l~~~~~~~~~~~~~ 262 (291)
. +|+.|.. .+-.+++|+++++.++++|.++++++..++ ....||.+++.+|+++++.-+.+.+.+
T Consensus 189 ~~~~~~p~g~~~~a------~~f~~~~D~~v~~~l~~gd~~~l~~~~~~~~~~~age~g~~~~~~l~Gal~~~~~~~~~~ 262 (282)
T TIGR02298 189 DNKDLAPEGMTTIA------SEFNRQVDLRVLELWRERDYREFCAMLPDYAVKCNGEGGMHDTVMLFGALGWDDYDGEVE 262 (282)
T ss_pred cccCCCcccCCchh------hHHHHHHHHHHHHHHHcCCHHHHHHhCHHHHHhcCcccChHHHHHHHhccCCCCccccce
Confidence 3 3343321 133567899999999999999999987755 368999999999999995433223455
Q ss_pred -EEeecCC
Q 022859 263 -FLRYEQS 269 (291)
Q Consensus 263 -ll~Y~~S 269 (291)
+..|.+|
T Consensus 263 ~l~~y~~~ 270 (282)
T TIGR02298 263 VITEYFPS 270 (282)
T ss_pred EeccccCC
Confidence 6678888
No 20
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=99.90 E-value=8.1e-23 Score=185.50 Aligned_cols=211 Identities=15% Similarity=0.118 Sum_probs=156.6
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeC--CCcccc-----CCCC----CCCcHHHHHHHHhcC---Ccee
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALST--ATVYKT-----PIGD----LPLDLEVIEELKATG---KFEL 119 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~--~~~~~T-----PlG~----~~vD~~~~~~L~~~~---~~~~ 119 (291)
..+++.+. ..+||+|||++|+|....+.+.+.. .....+ .+|. ++.|.+++++|.+.. ++..
T Consensus 25 ~~al~~l~~~l~~~~Pd~IvviS~Hw~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~y~~~g~~eLA~~i~~~~~~~gi~~ 104 (268)
T cd07371 25 SWAYERAGASLAASRPDVVLVYSTQWIAVLDHHWLTRPRSEGRHVDENWPEFGRLDYSINVDVELAEACVEEGRKAGLVT 104 (268)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCccccCcEEecccccceeecCcccchhceeeecCCCCHHHHHHHHHHHHHCCCcE
Confidence 45565553 3589999999996666554344432 111111 2333 778999999997643 3322
Q ss_pred --cccccCccccccccchHHHHHHhcCCCeeEEEEEeCC--CCHHHHHHHHHHHHHhhCC--CCeEEEEeCCCCCCCCC-
Q 022859 120 --MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA--VNAENEAMYGRLFAKYVDD--PSNFFSVSSDFCHWGSR- 192 (291)
Q Consensus 120 --~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~--~~~~~~~~l~~~L~~~~~~--~~~liv~SsDlsH~g~~- 192 (291)
.+......||+.-|+|-||. |+.+.++||+.++. .+.+++.+||++|++++++ +|++||+|+|+||+..+
T Consensus 105 ~~~~~~~~~lDHG~~vPL~~l~---p~~~ipvV~vs~~~~~~~~~~~~~lG~al~~~l~~~~~rv~iIgSG~lsH~l~~~ 181 (268)
T cd07371 105 RMMRYPRFPIDTGTITALTLMR---PGTDIPPVVISANNLYLSGEETEGEMDLAGKATRDAGKRVAVLGSGGLSHSHFHE 181 (268)
T ss_pred EEecCCCCCCCchhHHHHHHhc---CCCCCCeEEEEecCcCCCHHHHHHHHHHHHHHHHHcCCcEEEEEecCccccccCC
Confidence 13445678999999999965 44478999999864 6889999999999988775 89999999999999631
Q ss_pred ----CCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--C-CCcCChhHHHHHHHHHhhCCCCCceEEEe
Q 022859 193 ----FNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--D-NTICGRHPISVFLHMLGNCSTKIKIKFLR 265 (291)
Q Consensus 193 ----~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~-~~~CG~~~i~~~l~~~~~~~~~~~~~ll~ 265 (291)
++|.- ....+++||+++++.+.++|.++++++..+. . ...||...+..++.++...+ .++++++
T Consensus 182 ~~~~~~~~~-------~~~~~~~fD~~~~~~~~~gd~~~l~~~~~~~~~~a~~~~g~~~~~~l~gal~~~~--~~~~v~~ 252 (268)
T cd07371 182 EIDPPKDHI-------ESEEGDKWNRRMLELMEQGDMSALFELLPQYIKEARADMGSKAFTWMLGAMGYPE--LAAEVHG 252 (268)
T ss_pred CCCcccccc-------cchhhHHHHHHHHHHHHcCCHHHHHhcCHHHHHHhcccccHHHHHHHHHhcCCcc--cCccEee
Confidence 11111 1256789999999999999999999965333 3 37899999999999988765 4789999
Q ss_pred ecCCCCCCCCCCCeeEeeEEEEE
Q 022859 266 YEQSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 266 Y~~S~~~~~~~~~~VgYas~~~~ 288 (291)
|+.+ +.|||+.+.|.
T Consensus 253 Ye~~--------~G~G~~va~~~ 267 (268)
T cd07371 253 YGTV--------YGSGNAVIEFN 267 (268)
T ss_pred ccCC--------CccceEEEEEe
Confidence 9998 88999999885
No 21
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=99.89 E-value=2e-22 Score=182.86 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=158.6
Q ss_pred ceeeecCCchhchHHH--H---HHHHHhcC----CCCCCEEEEECCCCCCCC-----CceeEeCCCcc------ccCCCC
Q 022859 41 RGVIAPHAGYSYSGRA--A---AYAFGNID----PTSISRVFLLGPSHHYYT-----PKCALSTATVY------KTPIGD 100 (291)
Q Consensus 41 ~a~I~PHag~~ysg~~--a---a~ay~~l~----~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~------~TPlG~ 100 (291)
-++++||.-....|.- . ..+|+.+. +.+||+|||++|+|...+ +.+++...+.+ ..|-..
T Consensus 6 ~~~~~~H~~~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~ 85 (268)
T cd07367 6 GAAATSHILMSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPREL 85 (268)
T ss_pred EEEecCCcCcCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCccc
Confidence 3678888532221211 1 33444442 358999999999997653 23455433333 334446
Q ss_pred CCCcHHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHh
Q 022859 101 LPLDLEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKY 172 (291)
Q Consensus 101 ~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~ 172 (291)
++.|.+++++|.+.. ++..........||+.-|+|-||. |+.++|||||.++.. +.+++.+||++|+++
T Consensus 86 ~~gd~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~---p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~ 162 (268)
T cd07367 86 FPGHREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMG---PKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQY 162 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhC---CCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHH
Confidence 889999999997643 443222233468999999999965 335899999999553 678999999999998
Q ss_pred hC-----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChh-
Q 022859 173 VD-----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRH- 243 (291)
Q Consensus 173 ~~-----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~- 243 (291)
++ ++|++||+|+||||.. ++.+.+ ..+++||+++++.+.++|.+.+.++..++ ....||..
T Consensus 163 i~~~~~~d~rV~iiaSGgLSH~l---~~~~~~-------~~~~efD~~i~~~l~~gd~~~L~~~~~~~~~~~ag~~g~e~ 232 (268)
T cd07367 163 VEKRRPAGERVAVIAAGGLSHWL---GVPRHG-------EVNEAFDRMFLDLLEGGNGERLAGMGNDEILDQAGNGGLEI 232 (268)
T ss_pred HHhcCCCCCcEEEEEcccccCCC---CCCccc-------ccCHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhCcccchHH
Confidence 64 4789999999999996 233221 34689999999999999999999987533 56789999
Q ss_pred -HHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859 244 -PISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 244 -~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
+..++++++... ++++++|+...+ -..|++.+-|
T Consensus 233 ~~w~~~~GAl~~~----~~~v~~Ye~~~~------w~~g~~~~~~ 267 (268)
T cd07367 233 VNWIMAAAAVEAQ----SGEKVYYEPMPQ------WMTGMGGMEF 267 (268)
T ss_pred HHHHHHHhhcCCC----CccEEEEEEhHH------hhhhheeeec
Confidence 877777776543 479999999743 4566666543
No 22
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.88 E-value=1.4e-21 Score=177.51 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=141.8
Q ss_pred cCCCCCCEEEEECCCCCCCC--C---ceeEeCCCccccC---CC-----CCCCcHHHHHHHHhcC---CceecccccCcc
Q 022859 64 IDPTSISRVFLLGPSHHYYT--P---KCALSTATVYKTP---IG-----DLPLDLEVIEELKATG---KFELMDICVDEA 127 (291)
Q Consensus 64 l~~~~~~~VvIlGp~H~~~~--~---~~~~~~~~~~~TP---lG-----~~~vD~~~~~~L~~~~---~~~~~d~~~~~~ 127 (291)
+.+.+||+|||+|++|...+ + .+++......... +| .++.|.+++++|.+.. ++..........
T Consensus 44 v~~~~PDvvVvis~dH~~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~~~~~~lA~~i~~~l~~~gid~~~~~~~~l 123 (278)
T PRK13364 44 LEKVKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPEYSNADEGWGIPTLAPFKGDTELSWHIIESLVEEEFDITTCQEMLV 123 (278)
T ss_pred HHHhCCCEEEEECCchHhhhccccCCeEEEeeCceecCChhhcCCCCCCCCCCCHHHHHHHHHHHHHcCCCeecccCCCC
Confidence 34678999999999998764 3 4666665555555 44 7899999999998754 333222234568
Q ss_pred ccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCC--CCCCc
Q 022859 128 EHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGS--RFNYM 196 (291)
Q Consensus 128 EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~--~~g~~ 196 (291)
||+.-|+|.||..-. +.++|||||.++. .+.+++.+||++|+++++ ++|++||+|+||||+.. ++||.
T Consensus 124 DHG~~vPL~~l~~~~-d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~p~G~~ 202 (278)
T PRK13364 124 DHAFTLPLELFWPGR-DYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLDGERAGFI 202 (278)
T ss_pred CcchhhhHHHhCccc-CCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCCcccC
Confidence 999999999976532 1248899999944 468999999999999984 57999999999999963 44443
Q ss_pred cCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCCh--hHHHHHHHHHhhCCCCCceEEEeecC
Q 022859 197 HYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGR--HPISVFLHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 197 p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~--~~i~~~l~~~~~~~~~~~~~ll~Y~~ 268 (291)
+++||+++++.+.+ |.+++.++..+. +...||. .+..++++++.. +. .+.....|..
T Consensus 203 ------------~~~fD~~~l~~l~~-d~~~l~~~~~~e~~~~AG~~g~Eir~wi~~~gAl~~-~~-~~~~~~~y~p 264 (278)
T PRK13364 203 ------------NKDFDLQCMDSLVS-DPEWLTQYSNHELVELAGTQGVELLNWLAMRGALGG-KV-REVHRNYHIP 264 (278)
T ss_pred ------------CHHHHHHHHHHHHh-CHHHHHcCCHHHHHHHcccccHHHHHHHHHHHhhcC-Cc-eEEEEeeeec
Confidence 27999999999999 999999876332 5678999 888888888876 32 3445555543
No 23
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.88 E-value=1.8e-21 Score=180.39 Aligned_cols=220 Identities=14% Similarity=0.197 Sum_probs=157.4
Q ss_pred eeeecCCchhchHHHHHHHHHhc----CCCCCCEEEEECCCCCCCCC-----ceeEeCCCcccc----------------
Q 022859 42 GVIAPHAGYSYSGRAAAYAFGNI----DPTSISRVFLLGPSHHYYTP-----KCALSTATVYKT---------------- 96 (291)
Q Consensus 42 a~I~PHag~~ysg~~aa~ay~~l----~~~~~~~VvIlGp~H~~~~~-----~~~~~~~~~~~T---------------- 96 (291)
.-|.|-.+=....++. .+|..+ .+.+||+|||+||+|...+. .+++...+.+..
T Consensus 57 ~~i~~e~~~~~~~~~~-~a~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~ 135 (328)
T cd07366 57 NQITPEEMAARYARCQ-AALDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEA 135 (328)
T ss_pred cccCccccccchHHHH-HHHHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhcccccccccccc
Confidence 3445554433333433 345444 35789999999999986543 466654333332
Q ss_pred -------CCCCCCCcHHHHHHHHhcC---Cceec--cc--ccCccccccccchHHHHHHhcCCCeeEEEEEeCC------
Q 022859 97 -------PIGDLPLDLEVIEELKATG---KFELM--DI--CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA------ 156 (291)
Q Consensus 97 -------PlG~~~vD~~~~~~L~~~~---~~~~~--d~--~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~------ 156 (291)
+-..++.|.+++++|.+.. ++... +. .....+|++-+. +++++|+.++|||||.++.
T Consensus 136 ~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~dv~~~~~~~~~~~lDHG~~~~---l~~~~p~~~iPVVpisin~~~~p~~ 212 (328)
T cd07366 136 AAGYAPDEARTYPCHPELARHLIKHTVADGFDVAALDHLPDTVGIPHAFGFI---YRRIMGDLVIPVVPVLINTFYPPNQ 212 (328)
T ss_pred ccccCCCCCcCCCCCHHHHHHHHHHHHHcCCCeeeecccCcccCCCcchhhH---HHHhcCCCCCcEEEEeecCCCCCCC
Confidence 3455889999999998754 33221 11 112468995444 3446665689999999977
Q ss_pred CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 022859 157 VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYL 232 (291)
Q Consensus 157 ~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~ 232 (291)
.+.+++.+||++|+++++ ++|++||+|+||||.. .+++||+++++.+.++|.+.|+++.
T Consensus 213 ps~~r~y~lG~aL~~ai~~~~~d~rV~IIaSGgLSH~l-----------------~~~eFD~~~l~~l~~gD~~~L~~~~ 275 (328)
T cd07366 213 PSARRCFEFGRAVARAIRSWPGDARVGVIASGGLSHFV-----------------IDEEFDRRILDALRNRDAEFLSSLP 275 (328)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCC-----------------ChHHHHHHHHHHHHcCCHHHHHcCC
Confidence 367899999999999985 6799999999999994 2379999999999999999999876
Q ss_pred Hhc-CCCcCChhHHHHHHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeE
Q 022859 233 LEY-DNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYAS 284 (291)
Q Consensus 233 ~~~-~~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas 284 (291)
.+. ++..||.....++++++...+ .++++++|+.+....--+..++|++.
T Consensus 276 ~~~~~aG~~elr~wi~~~GAl~~~~--~~~~vl~Ye~~~r~~~~TG~~~~f~~ 326 (328)
T cd07366 276 EAHLQSGTSELKNWIAAAGALDDLG--LKMTSVDYVPCYRTEAGTGTAMGFVA 326 (328)
T ss_pred HHHHhccchhHHHHHHHHHhhcCCC--cceeEEEeeCCccccccccceeeEEe
Confidence 544 567899999999999998765 47899999998622222335566654
No 24
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.88 E-value=1.3e-21 Score=178.32 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=152.3
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCc-----eeEeCCCccccCCCC--------CCCcHHHHHHHHhcC---Cc
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPK-----CALSTATVYKTPIGD--------LPLDLEVIEELKATG---KF 117 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~-----~~~~~~~~~~TPlG~--------~~vD~~~~~~L~~~~---~~ 117 (291)
..+|+.+. +.+||+|||+||+|...+.. +++... +..+|+|. ++.|++++++|.+.. ++
T Consensus 32 ~~a~~~~~~~v~~~~pD~ivvi~~dH~~~f~~~~~P~f~i~~~-~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~~~g~ 110 (277)
T cd07368 32 WHAYAICAERLAALQVTSVVVIGDDHYTLFGTYCLPMYLIGTG-DVDGPYDPLPGLPRAVIENNEPLAHHIMQHGLEYGI 110 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCchHhhhhhccCCceEEecc-cccCCccccCCCCcccCcCCHHHHHHHHHHHHHcCC
Confidence 44555543 57899999999999887543 244433 36777764 889999999998754 34
Q ss_pred eecccccCccccccccchHHHHHH--hcCCCeeEEEEEeC-----CCCHHHHHHHHHHHHHhhC----CCCeEEEEeCCC
Q 022859 118 ELMDICVDEAEHSMEMHLPYLAKV--FEGHLIKIVPILVG-----AVNAENEAMYGRLFAKYVD----DPSNFFSVSSDF 186 (291)
Q Consensus 118 ~~~d~~~~~~EHslEvqlPfL~~~--~~~~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~~~----~~~~liv~SsDl 186 (291)
..........||+.-++|-||..- +-+.++++|||.++ ..+.+++.+||++|+++++ +++++||+|+|+
T Consensus 111 ~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~~~~~~lG~al~~ai~~~~~d~rVliIaSG~L 190 (277)
T cd07368 111 DWAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITSWRAHELGRVIGAAVEAWQGDERVAIIGSGGI 190 (277)
T ss_pred CEeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCcc
Confidence 222223445799999999998420 00137889999985 4677999999999999775 679999999999
Q ss_pred CCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCC--hhHHHHHHHHHhhCCCCCce
Q 022859 187 CHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICG--RHPISVFLHMLGNCSTKIKI 261 (291)
Q Consensus 187 sH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG--~~~i~~~l~~~~~~~~~~~~ 261 (291)
||..... +.+ ..+++||+++++.+.++|.++|+++..++ ....|| ..+..++++++..+ ++
T Consensus 191 SH~l~~~---~~~-------~~~~~fD~~~~~~l~~gd~~~L~~~~~~~~~~~aG~gg~e~~~~~~~~Gal~~~----~~ 256 (277)
T cd07368 191 SHWVGTA---EMG-------AVNEGFDREIMKLVAQGDLAALIALSDEEILEDGGNGGMEIRNWACAMGALPAA----RG 256 (277)
T ss_pred cCCCCCc---ccc-------ccCHHHHHHHHHHHHcCCHHHHHhCCHHHHHHHcccccHHHHHHHHHHHhcCCC----Cc
Confidence 9997322 221 34589999999999999999999986544 345677 56777777777543 68
Q ss_pred EEEeecCCCCCCCCCCCeeEeeEEEE
Q 022859 262 KFLRYEQSSQCKTKRDSSVSYASAAA 287 (291)
Q Consensus 262 ~ll~Y~~S~~~~~~~~~~VgYas~~~ 287 (291)
++++|+...+ -.+|++.+-|
T Consensus 257 ~vl~Ye~~~~------w~~G~~~~~~ 276 (277)
T cd07368 257 EVIAYEPVAE------WVTGLGFMQL 276 (277)
T ss_pred cEEEEechHH------HHhhhheeec
Confidence 9999998632 4566666543
No 25
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.86 E-value=1e-20 Score=175.21 Aligned_cols=198 Identities=17% Similarity=0.190 Sum_probs=139.4
Q ss_pred CCCCCEEEEECCCCCCCC-C----ceeEeCCCccccCCC----CCCC--------cHHHHHHHHhcC---CceecccccC
Q 022859 66 PTSISRVFLLGPSHHYYT-P----KCALSTATVYKTPIG----DLPL--------DLEVIEELKATG---KFELMDICVD 125 (291)
Q Consensus 66 ~~~~~~VvIlGp~H~~~~-~----~~~~~~~~~~~TPlG----~~~v--------D~~~~~~L~~~~---~~~~~d~~~~ 125 (291)
+.+||+|||++++|...+ . .+++.....+++++| .+.+ |++++++|.+.. ++...-....
T Consensus 44 ~~~PD~iVV~~sdH~~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~dva~~~~~ 123 (329)
T cd07369 44 AARPDVIIAFLDDHFENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLLRALVHDSFDCARMGEI 123 (329)
T ss_pred HhCCCEEEEEcCCchhhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHHHHHHHCCCCeeecCCc
Confidence 568999999999998733 2 477777667776743 4444 999999997644 3322111123
Q ss_pred ccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCC-----
Q 022859 126 EAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGS----- 191 (291)
Q Consensus 126 ~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~----- 191 (291)
..+|++-|+|-||... .++++|||.++. .+.+++.+||++|+++++ |+|++||+|+||||+.+
T Consensus 124 ~~DHG~~vPL~~l~p~---~~ipvVpI~in~~~~p~~~~~r~~~lG~AI~~aie~~~~d~rVaiIaSG~LSH~p~~~~~~ 200 (329)
T cd07369 124 EYGNNLLVPWKLMKPD---LDVSVIPIYTNVFSPPLMKYSRAYALGAAVRKAIEDLPDDLRVAFMATGGLSHWPPYWNPN 200 (329)
T ss_pred CCCccceeeHHHhcCC---CCCcEEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCcccccc
Confidence 4699999999996643 378999996644 567899999999999995 47999999999999531
Q ss_pred ---------------CCCCccCCc---------------------cccchhH-HHHHHHHHHHHHHHcCChHHHHHHHHh
Q 022859 192 ---------------RFNYMHYDK---------------------KHGVIHK-SIEALDKMGMDIIETGDPDAFKKYLLE 234 (291)
Q Consensus 192 ---------------~~g~~p~~~---------------------~~~~~~~-~~~~~D~~~i~~i~~~d~~~~~~~~~~ 234 (291)
+|||.|-.. +....+. .+++||+++++.+.++|.+.+.++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~fD~~~l~~l~~gd~~~l~~~~~~ 280 (329)
T cd07369 201 QPETDPFLQRMKEYQTYGKPVLEKDPNLFVDLAAYEIEMAKKNQWPLNSKHPLVNAAWDRKFLKAYCRGDSEWLKNLTYE 280 (329)
T ss_pred chhhhhhhhhccccCcCCcCcchhhhhhhhhhhhhhhhhhhhhcccccccCCccCHHHHHHHHHHHHcCCHHHHHcCCHH
Confidence 466633100 0001122 478999999999999999999987643
Q ss_pred c---CCCcCChhH--HHHHHHHHhhCCCCCceEEEeecCCC
Q 022859 235 Y---DNTICGRHP--ISVFLHMLGNCSTKIKIKFLRYEQSS 270 (291)
Q Consensus 235 ~---~~~~CG~~~--i~~~l~~~~~~~~~~~~~ll~Y~~S~ 270 (291)
. ....||... ..++++++ +. .+.++++|+...
T Consensus 281 ~~~~~aG~~g~e~~~wi~~~gAl---~~-~~~~~~~Ye~~~ 317 (329)
T cd07369 281 EVEEEGGHGGHEILNWVAVMGAM---DG-KKAKLLLYEPVL 317 (329)
T ss_pred HHHHHcccchHHHHHHHHHHHhc---CC-CCcceEEEechH
Confidence 3 345677766 34444544 33 368999999864
No 26
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.84 E-value=5e-20 Score=167.80 Aligned_cols=207 Identities=13% Similarity=0.105 Sum_probs=140.5
Q ss_pred HHHHHhc----CCCCCCEEEEECCCCCCCC--Cc---eeEeCCCcc-----ccCCC---CCCCcHHHHHHHHhcC---Cc
Q 022859 58 AYAFGNI----DPTSISRVFLLGPSHHYYT--PK---CALSTATVY-----KTPIG---DLPLDLEVIEELKATG---KF 117 (291)
Q Consensus 58 a~ay~~l----~~~~~~~VvIlGp~H~~~~--~~---~~~~~~~~~-----~TPlG---~~~vD~~~~~~L~~~~---~~ 117 (291)
-.+|+.+ ++.+||+|||+|++|...+ +. +++.....+ ..|.. .++.|.+++++|.+.. ++
T Consensus 34 ~~a~~~i~~~v~~~~PDviVvi~sdH~~~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~ 113 (279)
T PRK13365 34 FDGYEPVAAWLAEQKADVLVFFYNDHCTTFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEF 113 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCchHHHhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3445544 3578999999999998765 33 554443333 22223 3888999999998754 33
Q ss_pred eecccccCccccccccchHHHHHHhcCCCeeEEEEEeC-----CCCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859 118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-----AVNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH 188 (291)
Q Consensus 118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-----~~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH 188 (291)
...-......||+.-|+|.||..-..+.++|||||.++ ..+.+++.+||++|+++++ ++|++||+|+||||
T Consensus 114 ~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~pvVpi~in~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH 193 (279)
T PRK13365 114 DLTVFQDKPIDHGCAAPLPLLWPHVPDWPGTVVPIAINVLQYPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSH 193 (279)
T ss_pred CeeeccCCCCCchhhhHHHHhCCccccCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCcccc
Confidence 22212245689999999999764211124889999987 3467999999999999984 56999999999999
Q ss_pred CCC--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcC---CCcCChhHH--HHHHHHHhhCCCCCce
Q 022859 189 WGS--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYD---NTICGRHPI--SVFLHMLGNCSTKIKI 261 (291)
Q Consensus 189 ~g~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~---~~~CG~~~i--~~~l~~~~~~~~~~~~ 261 (291)
+.. ++||.| ++||+++++.+. +|.+.+.++..+.- ...||...+ .++++++.... .+.
T Consensus 194 ~l~~~~~g~~~------------~~~D~~f~~~l~-~d~~~l~~~~~~~~~~~aG~~g~ei~~wi~~~gal~~~~--~~~ 258 (279)
T PRK13365 194 QIHGERSGFNN------------TEWDMEFLDRFQ-HAPETLTDLTHTDYVRLGGAESVEQIMWLAMRGALGGPI--RKL 258 (279)
T ss_pred CCCCCCccCCC------------HHHHHHHHHHHh-hCHHHHHcCCHHHHHHHcCcccHHHHHHHHHHHhhcCCC--eEE
Confidence 974 444432 689999999997 59999998766443 344555443 22334443211 234
Q ss_pred EEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859 262 KFLRYEQSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 262 ~ll~Y~~S~~~~~~~~~~VgYas~~~~ 288 (291)
++..|..+ .+||+.+.|+
T Consensus 259 ~~~yy~p~---------~~G~~~~~~~ 276 (279)
T PRK13365 259 HQNYYLMT---------TTAMTVVLYE 276 (279)
T ss_pred EEEEEEEe---------cccEEEEEec
Confidence 44555543 3899988875
No 27
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=99.84 E-value=4.9e-20 Score=167.74 Aligned_cols=209 Identities=17% Similarity=0.214 Sum_probs=142.1
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCC-C----ceeEeCCCccccC--------CCCCCCcHHHHHHHHhcC---Cc
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYT-P----KCALSTATVYKTP--------IGDLPLDLEVIEELKATG---KF 117 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~-~----~~~~~~~~~~~TP--------lG~~~vD~~~~~~L~~~~---~~ 117 (291)
..+|+.++ +.+||+|||++++|...+ . .+++......+.. ...++.|++++++|.+.. ++
T Consensus 34 ~~a~~~~~~~i~~~~PD~iVvi~~dH~~~f~~d~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~ 113 (277)
T cd07950 34 FDGYEPVKQWLAEQKPDVLFMVYNDHVTSFFFDHYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEF 113 (277)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCcHHHHhccccCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCC
Confidence 45555553 568999999998897654 2 3555444444321 257899999999998753 33
Q ss_pred eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859 118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH 188 (291)
Q Consensus 118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH 188 (291)
..........||+.-|+|-||..-..+.+++||||.++.. +.+++.+||++|+++++ ++|++||+|+||||
T Consensus 114 ~~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH 193 (277)
T cd07950 114 DLTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSH 193 (277)
T ss_pred CeeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCcccc
Confidence 2222234568999999999976421012478999988775 78999999999999975 45899999999999
Q ss_pred CCC--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhH--HHHHHHHHhhCCCC-CceEE
Q 022859 189 WGS--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHP--ISVFLHMLGNCSTK-IKIKF 263 (291)
Q Consensus 189 ~g~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~--i~~~l~~~~~~~~~-~~~~l 263 (291)
+.. ++|+.| ++||+++++.+.+ |.+++.++..+.-...+|++. +..-+.++..++.+ .+.++
T Consensus 194 ~l~~~~~g~~~------------~~~D~~f~~~l~~-d~~~l~~~~~~~~~~~aG~~~~E~~~wi~~~gal~~~~~~~~~ 260 (277)
T cd07950 194 QVHGERAGFNN------------TEWDMEFLDLIEN-DPESLAAMTHADYATLGGAEGAEVIMWLIMRGALSDRVRELHR 260 (277)
T ss_pred CCCCCCCCCCC------------HHHHHHHHHHHHh-CHHHHHcCCHHHHHHHcCcchHHHHHHHHHHHhhcCCCeEeee
Confidence 974 333322 6899999999997 999998876555445565433 33333333444321 12333
Q ss_pred EeecCCCCCCCCCCCeeEeeEEEEE
Q 022859 264 LRYEQSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 264 l~Y~~S~~~~~~~~~~VgYas~~~~ 288 (291)
.|+.+ +.+||+.+.|+
T Consensus 261 -~yy~p--------~~tg~~~~~~~ 276 (277)
T cd07950 261 -NYYLP--------SMTGIATLVFE 276 (277)
T ss_pred -eEEee--------eecceeEEEec
Confidence 44443 46999998874
No 28
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=99.84 E-value=9.4e-20 Score=165.75 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=142.9
Q ss_pred HHHHhc----CCCCCCEEEEECCCCCCCC--C---ceeEeCCCccccC---C-----CCCCCcHHHHHHHHhcC---Cce
Q 022859 59 YAFGNI----DPTSISRVFLLGPSHHYYT--P---KCALSTATVYKTP---I-----GDLPLDLEVIEELKATG---KFE 118 (291)
Q Consensus 59 ~ay~~l----~~~~~~~VvIlGp~H~~~~--~---~~~~~~~~~~~TP---l-----G~~~vD~~~~~~L~~~~---~~~ 118 (291)
.+|+.+ .+.+||+|||++++|...+ + .+++.....+.+. + ..++.|++++++|.+.. ++.
T Consensus 35 ~a~~~~~~~v~~~~PD~iVvis~dH~~~f~~~~~p~f~i~~~~~~~g~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~d 114 (276)
T cd07949 35 DGFPPVHDWLEKAKPDVAVVFYNDHGLNFFLDKMPTFAVGAAPSYRNADEGWGIPALAPFKGDPELSWHLIESLVEDEFD 114 (276)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcHHhhhccccCCcEEEecCccccCcccccCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 455544 3578999999998896654 2 4666644433322 2 56889999999998754 343
Q ss_pred ecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCC
Q 022859 119 LMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHW 189 (291)
Q Consensus 119 ~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~ 189 (291)
.........||+.-|+|.||..-. +.++|||||.++.. +.+++.+||++|+++++ ++|++||+|+||||+
T Consensus 115 ~~~~~~~~lDHG~~vPL~~l~~~~-d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~ 193 (276)
T cd07949 115 ITTCQEMLVDHACTLPMQLFWPGA-EWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQ 193 (276)
T ss_pred eeccCCCCCCcchhhHHHHhcCcc-CCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccC
Confidence 322234678999999999977532 12589999999854 77899999999999886 368999999999999
Q ss_pred CCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHH-h--cCCCcCChh--HHHHHHHHHhhCCCCCceEEE
Q 022859 190 GSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLL-E--YDNTICGRH--PISVFLHMLGNCSTKIKIKFL 264 (291)
Q Consensus 190 g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~-~--~~~~~CG~~--~i~~~l~~~~~~~~~~~~~ll 264 (291)
... .+++ ..+++||+++++.+. +|.+.+.++.. + .+...||.. +..++++++.... .+...+
T Consensus 194 l~~---~~~g-------~~~~~fD~~~~~~l~-~d~~~L~~~~~~~~~~~AG~~g~e~~~wi~~~GAl~~~~--~~~~~~ 260 (276)
T cd07949 194 LDG---ERAG-------FINKDFDRYCLDKMV-DNPEWLTKYSIEELVELAGTQGVEFLMWIAMRGALGDEV--REVHRN 260 (276)
T ss_pred CCC---CCcc-------cchHHHHHHHHHHHh-cCHHHHHcCCHHHHHHHcccccHHHHHHHHHHHhhccCC--eeeeee
Confidence 631 1121 134899999999999 59999988763 3 256789999 5777788876633 367777
Q ss_pred eecC
Q 022859 265 RYEQ 268 (291)
Q Consensus 265 ~Y~~ 268 (291)
.|..
T Consensus 261 ~y~~ 264 (276)
T cd07949 261 YHIP 264 (276)
T ss_pred eEee
Confidence 7775
No 29
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=99.82 E-value=5.6e-19 Score=160.96 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=132.7
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCC-----ceeEeCC---CccccCCCCCC-----CcHHHHHHHHhcC---Cc
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTP-----KCALSTA---TVYKTPIGDLP-----LDLEVIEELKATG---KF 117 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~-----~~~~~~~---~~~~TPlG~~~-----vD~~~~~~L~~~~---~~ 117 (291)
..+|+.++ +.+||+|||+|++|...+. .+++... ..+..++|..+ .|++++++|.+.. ++
T Consensus 34 ~~a~~~i~~~i~~~~PDvvVii~~dH~~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~~~g~ 113 (284)
T PRK13366 34 FKGYEFSKQWEKEEKPDVIFLVYNDHATAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVIQDDF 113 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCcHHhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 44555553 5689999999999987653 3554432 34556677544 4599999987654 34
Q ss_pred eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCC
Q 022859 118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCH 188 (291)
Q Consensus 118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH 188 (291)
..........||+.-|+|-||.--....++|||||.++. .+.+++.+||++|+++++ +++++||+|+||||
T Consensus 114 ~~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH 193 (284)
T PRK13366 114 DLTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSH 193 (284)
T ss_pred CEeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCcccc
Confidence 322222356899999998886531101148999997655 367899999999999984 46799999999999
Q ss_pred CCC--CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHH--HHHHHHHhhC
Q 022859 189 WGS--RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPI--SVFLHMLGNC 255 (291)
Q Consensus 189 ~g~--~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i--~~~l~~~~~~ 255 (291)
+.. ++|+. +++||+++++.+.+ |.+++.++..++ +...||...+ .++++++...
T Consensus 194 ~l~~p~~g~~------------~~~fD~~~l~~l~~-d~~~l~~l~~~~~~~~AG~~G~e~~~Wi~~~gAl~~~ 254 (284)
T PRK13366 194 QLQGPRAGLI------------NREWDNAFLDRLIA-DPDGLSKMPHIDYVREAGSEGIELVMWLIARGAMSDV 254 (284)
T ss_pred CCCCCCCCCC------------cHHHHHHHHHHHhc-CHHHHHcCCHHHHHHHcccchHHHHHHHHHHHhhhcc
Confidence 953 23332 47999999999987 999998876522 6678999888 6667777663
No 30
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=99.82 E-value=5.7e-19 Score=167.01 Aligned_cols=203 Identities=17% Similarity=0.196 Sum_probs=142.5
Q ss_pred cCCCCCCEEEEECCCCCCCC-----CceeEeCCCccccCCC---------CCCCcHHHHHHHHhcC---CceecccccCc
Q 022859 64 IDPTSISRVFLLGPSHHYYT-----PKCALSTATVYKTPIG---------DLPLDLEVIEELKATG---KFELMDICVDE 126 (291)
Q Consensus 64 l~~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~~TPlG---------~~~vD~~~~~~L~~~~---~~~~~d~~~~~ 126 (291)
|++.+||.|||+|++|...| +.+++-....+. |.+ +++-+++++++|.+.. ++.........
T Consensus 44 l~~~~PDvvVv~~nDH~~~Ff~d~~P~F~IG~~~~~~-~~D~~g~P~~ly~~~G~peLA~~I~~~L~~~gfD~a~~~~~~ 122 (420)
T PRK13367 44 LEEKKPDVLLYIFNDHVTSFFFDHYSAFALGIDEQYA-VADEGGGPRDLPPVRGHAALSRHIGASLMADEFDMSFFQDKP 122 (420)
T ss_pred HHHhCCCEEEEEccchhhhcCcccCCCeEEEeccccc-ccccCCCccccCCCCCCHHHHHHHHHHHHhcCCCeecccCCC
Confidence 34578999999999999865 235554322222 433 4555999999998754 44332234567
Q ss_pred cccccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCC--CCCC
Q 022859 127 AEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGS--RFNY 195 (291)
Q Consensus 127 ~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~--~~g~ 195 (291)
.||++-|+|-||.---.+.++++|||.|+.. +.+++.+||++|+++++ +++|+||+|+|+||... ++|+
T Consensus 123 lDHG~~VPL~~l~p~ad~~P~~VVPi~invvq~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~~~g~ 202 (420)
T PRK13367 123 LDHGLFSPLSALLPHDDGWPVQVVPLQVGVLQFPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGERCGF 202 (420)
T ss_pred CCcchhhhHHHhCCccccCCCceeeeeeceeecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCCCC
Confidence 8999999999863211012478999988764 68999999999999984 46899999999999963 2333
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHHH--HHHHhhCCCCCceEEEeecCCCCCC
Q 022859 196 MHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVF--LHMLGNCSTKIKIKFLRYEQSSQCK 273 (291)
Q Consensus 196 ~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~~--l~~~~~~~~~~~~~ll~Y~~S~~~~ 273 (291)
. .++||+++++.+.+ |++.+.++...+-...||.+...+. +.+...++.+.+.....|+.+
T Consensus 203 ~------------n~~wD~~Fld~L~~-d~e~L~~~~~~e~~~~aG~~g~Ei~~Wl~a~GAL~~~~~~~~~~Yy~P---- 265 (420)
T PRK13367 203 N------------NPEWDAQFLDLLVN-DPERLTEMTLAEYATLGGMEGAEVIMWLIMRGALSANVECLHRDYYLP---- 265 (420)
T ss_pred C------------CHHHHHHHHHHHHh-CHHHHHcCCHHHHHHHcCCchHHHHHHHHHHhhhccCCeeeeeeeeec----
Confidence 2 26899999999997 9999998877667789997776554 333344432222223455554
Q ss_pred CCCCCeeEeeEEEEE
Q 022859 274 TKRDSSVSYASAAAK 288 (291)
Q Consensus 274 ~~~~~~VgYas~~~~ 288 (291)
+.+||+.+.|.
T Consensus 266 ----s~tG~~~~~~e 276 (420)
T PRK13367 266 ----SMTGIATLILE 276 (420)
T ss_pred ----chhceEEEEEe
Confidence 56889988875
No 31
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=99.79 E-value=6.1e-20 Score=166.94 Aligned_cols=195 Identities=21% Similarity=0.202 Sum_probs=132.3
Q ss_pred cCCCCCCEEEEECCCCCCCC----C-ceeEeCCC------ccc-------cCCCCCCCcHHHHHHHHhcC---Cceeccc
Q 022859 64 IDPTSISRVFLLGPSHHYYT----P-KCALSTAT------VYK-------TPIGDLPLDLEVIEELKATG---KFELMDI 122 (291)
Q Consensus 64 l~~~~~~~VvIlGp~H~~~~----~-~~~~~~~~------~~~-------TPlG~~~vD~~~~~~L~~~~---~~~~~d~ 122 (291)
|...+||+|||+||+|...+ . .+++.... ++. .+-..++.|.+++++|.+.. ++.....
T Consensus 37 l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~gfp~~~~~~~~~~~g~~~la~~i~~~l~~~g~~~~~~ 116 (272)
T PF02900_consen 37 LREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYGFPPELYEIKYPAPGDPELAERIAEHLRKAGFDVAAS 116 (272)
T ss_dssp CHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS-----SSSBSSS--EEB-HHHHHHHHHHHHHTTS-EEEC
T ss_pred HHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCcccccccccccccccccCCCCCCCHHHHHHHHHHHHhcCCCEEec
Confidence 34568999999999888732 1 23343322 222 23345889999999997643 4442224
Q ss_pred ccCccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC--CCCeEEEEeCCCCCCCCCCCC
Q 022859 123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD--DPSNFFSVSSDFCHWGSRFNY 195 (291)
Q Consensus 123 ~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g~~~g~ 195 (291)
.....||++-|+|-|| +|+.++++|||.++. .+.+++.+||++|+++++ ++|++||+|+|+||.....+.
T Consensus 117 ~~~~lDHG~~vPL~~l---~p~~~~Pvv~is~~~~~~p~~~~~~~~~lG~aL~~~~~~~~~rv~vi~SG~lsH~l~~~~~ 193 (272)
T PF02900_consen 117 PERGLDHGVWVPLYFL---FPDADIPVVPISINSFAPPSPSPERHYRLGRALRKARESSDERVAVIASGGLSHNLRDPRP 193 (272)
T ss_dssp SS--B-HHHHHHHHHH---CTT-SSEEEEEEEETSSS-TS-HHHHHHHHHHHHHHHHTSGGCEEEEEEE-SS--TTSTTT
T ss_pred cCcCCccccceeeeec---ccccCcceeeeEeecccccCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccCCCcccc
Confidence 5678999999988886 444589999999975 688999999999999986 679999999999999864332
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc-C----CCcCChhHHHHHHHHHhhCCCCCceEEEeecCC
Q 022859 196 MHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY-D----NTICGRHPISVFLHMLGNCSTKIKIKFLRYEQS 269 (291)
Q Consensus 196 ~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~-~----~~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~S 269 (291)
..+.. ..+++||+++++.|.++|.++++++..+. . +..|+..|+.+++++++..+ .+.+++.|+..
T Consensus 194 ~~~~~------~~~~~fD~~i~~~l~~gd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GA~~~~~--~~~~~~~y~~~ 264 (272)
T PF02900_consen 194 GGYDP------PWAEEFDEWILDALESGDLEALLDLDDEEPEAAAAHPEEHFRPWLVAAGAAGGAE--IKAEVLSYEPP 264 (272)
T ss_dssp TS---------CHHHHHHHHHHCCCCH-HHHTCTTGGHCCHCHHHHGCCCCCHHHHHHHHTS-SEC--SCEEEEECCCE
T ss_pred cchhh------HhHHHHHHHHHHHHHcCChHHHhhcChhhHHHHhCCChhHHHHHHHHHHhcCCCc--cceeeEEEeCc
Confidence 21110 26789999999999999999988876533 1 23999999999999998733 47899999986
No 32
>PRK13373 putative dioxygenase; Provisional
Probab=99.78 E-value=2.8e-18 Score=157.32 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=139.8
Q ss_pred CCCCCEEEEECCCCCCCCC-----ceeEeCC----Cccc--------cCCCCCCCcHHHHHHHHhcC---CceecccccC
Q 022859 66 PTSISRVFLLGPSHHYYTP-----KCALSTA----TVYK--------TPIGDLPLDLEVIEELKATG---KFELMDICVD 125 (291)
Q Consensus 66 ~~~~~~VvIlGp~H~~~~~-----~~~~~~~----~~~~--------TPlG~~~vD~~~~~~L~~~~---~~~~~d~~~~ 125 (291)
+.+||.|||+|++|+..|. .+++-.. +.|+ ++.|.++++.+++++|++.. +|+..-....
T Consensus 44 e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l~~~gfDva~s~~m 123 (344)
T PRK13373 44 AARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLEALRLTRQERFGGAPEIAERLLRSLVADGYDVARMGEI 123 (344)
T ss_pred HhCCCEEEEEccchhhhhccccCCceEEEecccccCCccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeeece
Confidence 5789999999999997652 3454322 2333 66788999999999998865 4433222345
Q ss_pred ccccccccchHHHHHHhcCCCeeEEEEEeCC-----CCHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCc
Q 022859 126 EAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-----VNAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYM 196 (291)
Q Consensus 126 ~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-----~~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~ 196 (291)
..+|++.++|-|| +|+...+||||.+|. .+.++|.+||++|+++++ ++||+||+|+.|||+.+-.+..
T Consensus 124 ~vDHg~~vPl~~l---~~~~~~pvVPV~vN~~~~P~p~~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH~p~~~~~~ 200 (344)
T PRK13373 124 EYGNNLMVPWKLM---APRSAPAIIPVFTNVFSPPVMPYRRAYAFGAALRNAAEALDADLRVAFMATGGMSHWPPFWNDS 200 (344)
T ss_pred eCCcceeeeHHHh---CCCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCcccCCCcccccC
Confidence 7799998887764 544456899999998 356899999999999996 4799999999999984311110
Q ss_pred -c--------------CC--------------------------ccccchh-HHHHHHHHHHHHHHHcCChHHHHHHHHh
Q 022859 197 -H--------------YD--------------------------KKHGVIH-KSIEALDKMGMDIIETGDPDAFKKYLLE 234 (291)
Q Consensus 197 -p--------------~~--------------------------~~~~~~~-~~~~~~D~~~i~~i~~~d~~~~~~~~~~ 234 (291)
| .| .+....+ ..+++||+++|+.+.++|.+.+.++..+
T Consensus 201 ~p~~~~~l~~~~~~q~~G~~~~~r~~~~~r~~~~~~i~~~~r~~~~~~~~~~~iN~ewD~~fLd~l~~gD~e~L~~~t~~ 280 (344)
T PRK13373 201 SPEADAFLARMKAFQTHGKSVLEKDPHLLRDLAAYEIEMAERNQWPLNSPHPLVNEAWDRQMLDALARGDVEFLCGLQYE 280 (344)
T ss_pred chhhhhhhhccccccccCCCchhhhhhhhhhhhhhhhhHHHHhhccccccccccCHHHHHHHHHHHHcCCHHHHHcCCHH
Confidence 0 00 0001111 2677999999999999999999887665
Q ss_pred cCCCcCChhHHHHH--HHHHhhCCCCCceEEEeecC
Q 022859 235 YDNTICGRHPISVF--LHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 235 ~~~~~CG~~~i~~~--l~~~~~~~~~~~~~ll~Y~~ 268 (291)
.-...-|.+...+. +.+...++. .+.+++.|+-
T Consensus 281 e~~~~~G~gg~Ei~~Wiaa~gAlg~-~~~~~~~Yep 315 (344)
T PRK13373 281 DVKRDGGHGGQEIINWIELMGAMKG-APATLLEYEA 315 (344)
T ss_pred HHHHHcCcccHHHHHHHHHHHhccC-CCcceEEEEE
Confidence 54455666554443 455555554 4678888875
No 33
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=99.78 E-value=6.1e-18 Score=153.97 Aligned_cols=190 Identities=13% Similarity=0.122 Sum_probs=134.2
Q ss_pred CCCCCEEEEECCCCCCCCC-----ceeEeCCCccccC---CC-----CCCCcHHHHHHHHhcC---CceecccccCcccc
Q 022859 66 PTSISRVFLLGPSHHYYTP-----KCALSTATVYKTP---IG-----DLPLDLEVIEELKATG---KFELMDICVDEAEH 129 (291)
Q Consensus 66 ~~~~~~VvIlGp~H~~~~~-----~~~~~~~~~~~TP---lG-----~~~vD~~~~~~L~~~~---~~~~~d~~~~~~EH 129 (291)
+.+||+|||+|++|...+. .+++.....+..- +| .++.|++++++|.+.. ++..........||
T Consensus 46 ~~~pD~vVvi~~dH~~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~~~~~~lDH 125 (277)
T cd07364 46 KNKPDVAIIVYNDHASAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTIVNEMDVDH 125 (277)
T ss_pred HhCCCEEEEEcCchHHhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCc
Confidence 5789999999999987653 3565544433311 12 5889999999998753 34332222357899
Q ss_pred ccccchHHHHHHhcCCCeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----CCCeEEEEeCCCCCCCCCCCCccCCc
Q 022859 130 SMEMHLPYLAKVFEGHLIKIVPILVGAV-----NAENEAMYGRLFAKYVD----DPSNFFSVSSDFCHWGSRFNYMHYDK 200 (291)
Q Consensus 130 slEvqlPfL~~~~~~~~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~~~~liv~SsDlsH~g~~~g~~p~~~ 200 (291)
+.-|+|.||..-....+++||||.++.. +.+++.+||++|+++++ ++|++||+|+|+||...... ++
T Consensus 126 G~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~~~rd~rV~iIaSG~lSH~L~~~~---~g- 201 (277)
T cd07364 126 GLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVESYDEDLKVAIWGTGGMSHQLQGER---AG- 201 (277)
T ss_pred chhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCC---cc-
Confidence 9999999975421012478999988764 67899999999999875 46799999999999964321 11
Q ss_pred cccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc---CCCcCChhHH--HHHHHHHhhCCCCCceEEEeecC
Q 022859 201 KHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY---DNTICGRHPI--SVFLHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 201 ~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~---~~~~CG~~~i--~~~l~~~~~~~~~~~~~ll~Y~~ 268 (291)
..+++||+++++.+.+ |.+.+.++..+. +..-||...+ .++++++.... .+.....|..
T Consensus 202 ------~~~~eFD~~i~~~l~~-d~~~l~~~~~~~~~~~ag~~g~e~~~wi~~~GAl~~~~--~~~~~~~~~p 265 (277)
T cd07364 202 ------LINKEFDNRFLDKLIS-DPEGLAKMPHIEYLREAGSEGIELVMWLIMRGALDEQV--RELHRFYHVP 265 (277)
T ss_pred ------CchHHHHHHHHHHHHh-CHHHHHcCCchHHHHHcCccchhHHHHHHHHhhhccCC--eEEEEeeeec
Confidence 1268999999999998 999998876422 4566888877 66777776532 2444455443
No 34
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=99.77 E-value=1.6e-17 Score=149.75 Aligned_cols=189 Identities=16% Similarity=0.091 Sum_probs=133.8
Q ss_pred HHHHhcCC--CCCCEEEEECCCCCCCCCceeEeCCCc-----cccCC------CCCCCcHHHHHHHHhcC---Cceeccc
Q 022859 59 YAFGNIDP--TSISRVFLLGPSHHYYTPKCALSTATV-----YKTPI------GDLPLDLEVIEELKATG---KFELMDI 122 (291)
Q Consensus 59 ~ay~~l~~--~~~~~VvIlGp~H~~~~~~~~~~~~~~-----~~TPl------G~~~vD~~~~~~L~~~~---~~~~~d~ 122 (291)
.+++.+.+ .+||+|||++|+|......+.+..... +.-|- =+.+.|.+++++|.+.. ++.....
T Consensus 21 ~~l~~~~~~l~~p~~IiviSaHw~~~~~~i~~~~~~~~~~df~gfp~~~y~~~y~~~g~~eLa~~i~~~l~~~gi~~~~~ 100 (253)
T cd07363 21 AFLRELGKELPKPKAILVISAHWETRGPTVTASARPETIYDFYGFPPELYEIQYPAPGSPELAERVAELLKAAGIPARLD 100 (253)
T ss_pred HHHHHHHHhcCCCCEEEEEcCCcccCCCeEEecCCCCceeCCCCCCHHHeeccCCCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 66666642 289999999997766644444432211 12121 14688999999998754 3322222
Q ss_pred ccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-CHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCcc
Q 022859 123 CVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-NAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKK 201 (291)
Q Consensus 123 ~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-~~~~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~ 201 (291)
.....||++-|+|-|+ +|+.+++||||.++.. +.+++.+||++|+++. +++++||+|+|+||.....+....
T Consensus 101 ~~~~lDHG~~vPL~~~---~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~-~~~v~ii~SG~lsH~l~~~~~~~~--- 173 (253)
T cd07363 101 PERGLDHGAWVPLKLM---YPDADIPVVQLSLPASLDPAEHYALGRALAPLR-DEGVLIIGSGSSVHNLRALRWGGP--- 173 (253)
T ss_pred CCcCCcccHHHHHHHH---cCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhh-hCCEEEEecCcceechhhhccccC---
Confidence 2466899999999885 4555899999999876 8899999999999865 569999999999999853222100
Q ss_pred ccchhHHHHHHHHHHHHHHHcCChHHHHHHHH------hcCCCcCChhHHHHHHHHHhhC
Q 022859 202 HGVIHKSIEALDKMGMDIIETGDPDAFKKYLL------EYDNTICGRHPISVFLHMLGNC 255 (291)
Q Consensus 202 ~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~------~~~~~~CG~~~i~~~l~~~~~~ 255 (291)
......+++||+++++.|.++|.++++.... +-+.+.|+..|+.+++++++..
T Consensus 174 -~~~~~~~~~Fd~~i~~~l~~~d~~~l~~~~~~~~~~~~ahp~~~h~~pll~~lGa~~~~ 232 (253)
T cd07363 174 -APPPPWALEFDDWLKDALTAGDLDALLDYWEKAPHARRAHPTEEHLLPLLVALGAAGGD 232 (253)
T ss_pred -CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHhCccHHHcCCChHHHHHHHHHhcCCCCC
Confidence 0012567999999999999999999664322 1234669999999999887653
No 35
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=99.67 E-value=1.3e-15 Score=144.59 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=125.8
Q ss_pred CCCCCCEEEEECCCCCCCC-----CceeEeCCCccc-cC--CCCCCC-----cHHHHHHHHhcC---CceecccccCccc
Q 022859 65 DPTSISRVFLLGPSHHYYT-----PKCALSTATVYK-TP--IGDLPL-----DLEVIEELKATG---KFELMDICVDEAE 128 (291)
Q Consensus 65 ~~~~~~~VvIlGp~H~~~~-----~~~~~~~~~~~~-TP--lG~~~v-----D~~~~~~L~~~~---~~~~~d~~~~~~E 128 (291)
.+.+||.|||+|++|...| +.+++-....+. .+ .|.+++ +++++++|++.. ++..........|
T Consensus 192 ~~~~PDVvVi~~nDH~~~Ff~d~mP~FaIG~~~~~~p~d~g~G~~~v~~~pG~peLA~~I~~~L~~~GfD~a~~~erglD 271 (444)
T PRK13372 192 KEHLPDVIILVYNDHATAFDLEIIPTFAIGTAAEFPPADEGWGPRPVPDVIGHPELAAHIAQSVIQDDFDLTIVNEMDVD 271 (444)
T ss_pred HHhCCCEEEEEccchhhhcCcccCCCeEEEEccccCCCcccCCCCCCCCCCCCHHHHHHHHHHHHhcCCChhhccCCCCC
Confidence 4578999999999999865 235554333322 11 455555 999999998754 4433333456789
Q ss_pred cccccchHHHHHHhcCC---CeeEEEEEeCCC-----CHHHHHHHHHHHHHhhC----C-CCeEEEEeCCCCCCCCCCCC
Q 022859 129 HSMEMHLPYLAKVFEGH---LIKIVPILVGAV-----NAENEAMYGRLFAKYVD----D-PSNFFSVSSDFCHWGSRFNY 195 (291)
Q Consensus 129 HslEvqlPfL~~~~~~~---~~~IVPi~vg~~-----~~~~~~~l~~~L~~~~~----~-~~~liv~SsDlsH~g~~~g~ 195 (291)
|++-|+|-+ ++|+. ++|||||.|+.. +.++|.+||++|+++.+ | ++|+||+|+.+||+...
T Consensus 272 HG~~vPL~l---m~P~ad~~~IPVVPvsvN~~~~Plps~~R~~~LG~AL~~lres~~~D~erVlIIGSGGLSHnL~~--- 345 (444)
T PRK13372 272 HGLTVPLSL---MCGDPEAWPCPVIPFAVNVVQYPVPSGRRCYELGQAIRRAIDKWDADPLNVQIWGTGGMSHQLQG--- 345 (444)
T ss_pred chhhhhHHH---hCCcccCCCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHhhcccccCCEEEEecCcccCCCCC---
Confidence 999999887 45532 489999999886 88999999999999987 2 68999999999999531
Q ss_pred ccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcCChhHHHH
Q 022859 196 MHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISV 247 (291)
Q Consensus 196 ~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~CG~~~i~~ 247 (291)
+ ... ..+++||+++++.|.+ |++.+.++........||.+..-+
T Consensus 346 -~---~~g---~in~eFD~~~ld~L~~-D~e~L~~~~~~~~~~~aG~~g~El 389 (444)
T PRK13372 346 -P---RAG---LINEEFDNAFLDHLIA-DPEAAAEIPHIDYVDEAGSEGIEL 389 (444)
T ss_pred -C---CCc---cchHHHHHHHHHHHHh-CHHHHHcCcccHHHHHcCCchHHH
Confidence 1 111 3568999999999998 999988876655667899875443
No 36
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2e-14 Score=123.95 Aligned_cols=209 Identities=16% Similarity=0.210 Sum_probs=154.4
Q ss_pred eeeecCCchh-----chHHHHHHHHHhcCC-C-CCCEEEEECCCCCCCCCceeEeCCCccccC--C--------CCCCCc
Q 022859 42 GVIAPHAGYS-----YSGRAAAYAFGNIDP-T-SISRVFLLGPSHHYYTPKCALSTATVYKTP--I--------GDLPLD 104 (291)
Q Consensus 42 a~I~PHag~~-----ysg~~aa~ay~~l~~-~-~~~~VvIlGp~H~~~~~~~~~~~~~~~~TP--l--------G~~~vD 104 (291)
-.|.||-+=. ---+..-.|++.+.. . .++|+|||+|+-....+-+++- ..++-+| + +...+|
T Consensus 5 iyv~PHgdEii~~~~~e~~~l~kA~k~i~~~~~~seT~VvIsPHgi~ldd~iavi-ys~~l~g~~~~~k~~~i~~ey~~d 83 (261)
T COG3885 5 IYVIPHGDEIIDPEDEESRKLNKAIKEIASDDKGSETYVVISPHGIRLDDYIAVI-YSEYLSGLPYRTKHHPIRKEYKND 83 (261)
T ss_pred EEeccCCccccCCchhHHHHHHHHHHHHHcccCCCceEEEEcCCceeeechhhHH-hHHhhcccccccccCcchhhhhcc
Confidence 4577885322 223444667777753 2 3899999999443333334432 1223332 2 458899
Q ss_pred HHHHHHHHhcC--Ccee----cc-----cccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhh
Q 022859 105 LEVIEELKATG--KFEL----MD-----ICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYV 173 (291)
Q Consensus 105 ~~~~~~L~~~~--~~~~----~d-----~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~ 173 (291)
++++++|.+.. .+-. ++ .....++|+--++|.||+. -+||-+.-..++.+...++|..|.+++
T Consensus 84 reLa~~I~~~a~g~~p~v~it~~~lkg~~s~~~Ld~G~~IPL~Flk~------rrIV~lt~arl~~~~l~~Fg~~l~~~l 157 (261)
T COG3885 84 RELADKIYEEAKGQFPLVCITFSILKGNYSRCPLDWGSLIPLYFLKR------RRIVLLTPARLSREILVKFGDNLGKAL 157 (261)
T ss_pred HHHHHHHHHHhccCCceEEEechhhcCcCCccccccccccchhhccc------eeEEEechhhccHHHHHHHHHHHHHHH
Confidence 99999997743 1111 11 2336789999999999743 479999988889999999999999999
Q ss_pred C--CCCeEEEEeCCCCCCCC---CCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhc--CCCcCChhHHH
Q 022859 174 D--DPSNFFSVSSDFCHWGS---RFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEY--DNTICGRHPIS 246 (291)
Q Consensus 174 ~--~~~~liv~SsDlsH~g~---~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~--~~~~CG~~~i~ 246 (291)
+ ++++.+|+|.|.+|-.. +|||+++ .++.|+.+++.+.++|.+++++...+. ++.-|++..+.
T Consensus 158 e~~~~ki~lIiSaD~aHth~edGPYGYs~~----------se~yDk~iv~~lks~n~e~l~~iD~~~I~~Akpdsy~sll 227 (261)
T COG3885 158 EEYERKISLIISADHAHTHDEDGPYGYSEE----------SEEYDKIIVDSLKSGNFEALLSIDDEVIAEAKPDSYWSLL 227 (261)
T ss_pred HHhhcceEEEEecccccccCCCCCCCCChh----------HHHHHHHHHHHhcccCHHHHHhccHHHHHhcCCchHHHHH
Confidence 7 47999999999999985 7888754 479999999999999999999987766 67889999999
Q ss_pred HHHHHHhhCCCCCceEEEeecCC
Q 022859 247 VFLHMLGNCSTKIKIKFLRYEQS 269 (291)
Q Consensus 247 ~~l~~~~~~~~~~~~~ll~Y~~S 269 (291)
++++.++.... |+++..|+-.
T Consensus 228 i~lgiLe~~~~--K~~~~~y~~~ 248 (261)
T COG3885 228 ILLGILEESPR--KMSLVEYYVP 248 (261)
T ss_pred HHHHHHhcccc--cceEEEEecc
Confidence 99999998764 6776666543
No 37
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=99.34 E-value=1.2e-10 Score=103.69 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=147.1
Q ss_pred HHHHHhcC----CCCCCEEEEECCCCCCCCCceeEeC---CCccccCCCC----------CCCcHHHHHHHHhcCC---c
Q 022859 58 AYAFGNID----PTSISRVFLLGPSHHYYTPKCALST---ATVYKTPIGD----------LPLDLEVIEELKATGK---F 117 (291)
Q Consensus 58 a~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~~~---~~~~~TPlG~----------~~vD~~~~~~L~~~~~---~ 117 (291)
-++.+.|. +.+||+||+++| |+.......++. .+.|.+=.|- -+-+++++++|.+... +
T Consensus 29 ~~~l~~lG~~~~e~rp~tIiV~Sa-Hw~t~~~~~v~~~e~~~~i~DfygFP~~ly~~~Y~a~G~peLa~~i~~~l~~~~v 107 (268)
T COG3384 29 TRGLRELGRELPELRPDTIIVFSA-HWETRGAYHVTASEHPETIHDFYGFPDELYDVKYPAPGSPELAQRIVELLAKLGV 107 (268)
T ss_pred HHHHHHHHHhhhhcCCCEEEEEec-eEEecCceeEEcccCcceeeccCCCCHHHHhccCCCCCCHHHHHHHHHHhcccCc
Confidence 34444443 347999999999 776544444433 3444444443 6778899988877542 2
Q ss_pred eecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCC-CHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCc
Q 022859 118 ELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAV-NAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYM 196 (291)
Q Consensus 118 ~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~-~~~~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~ 196 (291)
.. +...-..||+.=++| ++.||+.++|||.|.+... +.+..+++|++|+++.++ .++||+|+.++|....+.+.
T Consensus 108 ~a-~~~~~gLDHGtwvpL---~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~vlilaSGs~~H~l~~~~~~ 182 (268)
T COG3384 108 PA-DAPSWGLDHGTWVPL---RYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREE-GVLILASGSLVHNLRLLKWA 182 (268)
T ss_pred cc-cCCccCCCccceeee---hhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-CEEEEecCcceeehhhhhhc
Confidence 21 224567899997775 4578888999999999886 688889999999998764 69999999999998765554
Q ss_pred cCCccccchhHHHHHHHHHHHHHHH--cCChHHHHHHHHhcCC------CcCChhHHHHHHHHHhhCCCCCceEEEeecC
Q 022859 197 HYDKKHGVIHKSIEALDKMGMDIIE--TGDPDAFKKYLLEYDN------TICGRHPISVFLHMLGNCSTKIKIKFLRYEQ 268 (291)
Q Consensus 197 p~~~~~~~~~~~~~~~D~~~i~~i~--~~d~~~~~~~~~~~~~------~~CG~~~i~~~l~~~~~~~~~~~~~ll~Y~~ 268 (291)
..+ .+..+++||..+.+.|. .+|.+.|.++.+.... +.=...|+..+|++... + .+.+++-+..
T Consensus 183 ~~~-----~~~~a~~F~~~~~~~v~~~~~d~~~~~~~~~~~p~~~~~~~~~eH~~pL~~~lG~~~~-~--~~~ei~~d~~ 254 (268)
T COG3384 183 GDG-----PYPWAREFDEWMKKNVVLWGGDFAPLCNYLPLYPDALIAEPGEEHLLPLLYALGAWDG-D--EKVEIVTDLF 254 (268)
T ss_pred CCC-----CChhHHHHHHHHHHHHHHhccchHHHhHhhhhchHhhhCCCCccchHHHHHHhhccCC-C--CCeeEEeccc
Confidence 221 34788999999999996 3588999998776632 34445566666665544 1 3677776444
Q ss_pred CCCCCCCCCCeeEeeEEEEE
Q 022859 269 SSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 269 S~~~~~~~~~~VgYas~~~~ 288 (291)
- ..+||+.++.|.
T Consensus 255 ~-------~~s~sm~~~~F~ 267 (268)
T COG3384 255 E-------SGSLSMLNAQFP 267 (268)
T ss_pred c-------cccceeEEEecC
Confidence 2 256888887764
No 38
>PRK10628 LigB family dioxygenase; Provisional
Probab=98.98 E-value=1.4e-07 Score=84.46 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=102.5
Q ss_pred CCCcHHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCC-CCHHHHHHHHHHHHHhhCCC
Q 022859 101 LPLDLEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA-VNAENEAMYGRLFAKYVDDP 176 (291)
Q Consensus 101 ~~vD~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~-~~~~~~~~l~~~L~~~~~~~ 176 (291)
.+-++++++++.+.. +. ..++.....||++=|+|-. .+|+.++|||.|.+.. .+.+...++|++|+++ +++
T Consensus 66 a~G~p~LA~~i~~ll~~~~~-~~~~~~rGlDHG~WvpL~~---m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~L-R~~ 140 (246)
T PRK10628 66 APGSPALAQRLVELLAPVPV-TLDKEAWGFDHGSWGVLIK---MYPDADIPMVQLSIDSTKPAAWHFEMGRKLAAL-RDE 140 (246)
T ss_pred CCCCHHHHHHHHHHhhhcCc-ccCCcccCcccchhhhhhh---hCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhh-ccC
Confidence 566777777776643 33 2233347789999887654 7888899999999955 5777889999999986 667
Q ss_pred CeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcC-C--hHHHHHHHHhcCC-----CcCChhHHHHH
Q 022859 177 SNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETG-D--PDAFKKYLLEYDN-----TICGRHPISVF 248 (291)
Q Consensus 177 ~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~-d--~~~~~~~~~~~~~-----~~CG~~~i~~~ 248 (291)
.++||+|+..+|=+..+.+... ......+.+||..+.+.|.+. | .+.++++.+..+. +.-=.-|+.++
T Consensus 141 gvLIigSG~~~HNL~~~~~~~~----~~~~~wa~~F~~wl~~~l~~~~~~r~~~L~~~~~~p~a~~ahPt~EH~lPL~~a 216 (246)
T PRK10628 141 GIMLVASGNVVHNLRTVKWHGD----SSPYPWAESFNQFVKANLTWQGPVEQHPLVNYLQHEGGALSNPTPEHYLPLLYV 216 (246)
T ss_pred CEEEEecCccccchhhhcccCC----CCCchHHHHHHHHHHHHHhcCccchHHHHHHHHhCcChhhcCCChHHHHHHHHH
Confidence 8999999999999865544211 112356789999999999954 5 8888887443322 33445566666
Q ss_pred HHHHhh
Q 022859 249 LHMLGN 254 (291)
Q Consensus 249 l~~~~~ 254 (291)
+++++.
T Consensus 217 lGAa~~ 222 (246)
T PRK10628 217 LGAWDG 222 (246)
T ss_pred hcCCCC
Confidence 666543
No 39
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=52.61 E-value=21 Score=31.06 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=47.7
Q ss_pred eeEE-EEEeCCCCHHH--HHHHHHHHHHhhCC--CCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHH
Q 022859 147 IKIV-PILVGAVNAEN--EAMYGRLFAKYVDD--PSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIE 221 (291)
Q Consensus 147 ~~IV-Pi~vg~~~~~~--~~~l~~~L~~~~~~--~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~ 221 (291)
|.|+ ||++|..+..+ +.++|+.+.+++.+ +++-|-.+++|+..+. + .-.|..++.-++
T Consensus 7 ~~i~g~v~~Gpsssht~laerlG~l~~ql~~~~~~~I~i~~~Gsla~t~~-------~----------~~~~~A~l~GlL 69 (208)
T TIGR00719 7 FDIIGPIMIGPSSSHTAGAAKIANVARSIFGNEPEQIEFQFHGSFAETFK-------G----------HGTDRAIIGGIL 69 (208)
T ss_pred hhEecCceECCChhHHHHHHHHHHHHHHHhcCCCcEEEEEEEeeecccCC-------C----------chHHHHHHhhhc
Confidence 4588 99999877755 48888888888764 4688999999997421 0 256888888888
Q ss_pred cCChHH
Q 022859 222 TGDPDA 227 (291)
Q Consensus 222 ~~d~~~ 227 (291)
...++.
T Consensus 70 ~~~~~~ 75 (208)
T TIGR00719 70 DFDPDD 75 (208)
T ss_pred CCCCCc
Confidence 766554
No 40
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=35.88 E-value=11 Score=25.76 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.9
Q ss_pred eeecCCchhchHHHHHHHHHh
Q 022859 43 VIAPHAGYSYSGRAAAYAFGN 63 (291)
Q Consensus 43 ~I~PHag~~ysg~~aa~ay~~ 63 (291)
+++||.||.-+-++|-+|++.
T Consensus 4 aL~p~iGYe~aa~iAk~A~~~ 24 (55)
T PF10415_consen 4 ALNPYIGYEKAAEIAKEALAE 24 (55)
T ss_dssp GGHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhccHHHHHHHHHHHHc
Confidence 578999999999999888853
No 41
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=35.70 E-value=43 Score=29.78 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=41.7
Q ss_pred eeeecCCchhchHHHHHHHHHhcCCCCCC-EEEEECCCCCCCCCceeEeCCCccccCCCCCC----CcHHHHHHHHhcC
Q 022859 42 GVIAPHAGYSYSGRAAAYAFGNIDPTSIS-RVFLLGPSHHYYTPKCALSTATVYKTPIGDLP----LDLEVIEELKATG 115 (291)
Q Consensus 42 a~I~PHag~~ysg~~aa~ay~~l~~~~~~-~VvIlGp~H~~~~~~~~~~~~~~~~TPlG~~~----vD~~~~~~L~~~~ 115 (291)
=++.||-.- |. ..+|+.+++.+|+ .+|+++|.|..-|.... . .+..||+|+-. +-++....|.++.
T Consensus 169 YiLdPHTAV---av--~~~~r~idkt~ps~~~i~lstAh~aKFa~AV-~--~Al~~~~s~yn~~~~~h~~~l~~l~~~e 239 (266)
T KOG2616|consen 169 YILDPHTAV---AV--NYHYRQIDKTQPSIPYICLSTAHPAKFAEAV-N--AALSTPESPYNFVALVHPEELCTLMRRE 239 (266)
T ss_pred eeecCchHH---HH--HHHHHHHhccCCCCceEEecccChhhhhHHH-H--HHhcCCCCCccccchhcHHHHHHHHhhh
Confidence 688999642 33 4557888876665 47999999998876532 1 24556666633 4445555555443
No 42
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=32.77 E-value=49 Score=28.66 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=31.8
Q ss_pred CchhchHHHHHHHHHhcC---CCCCCEEEEECCCCCCCCC
Q 022859 48 AGYSYSGRAAAYAFGNID---PTSISRVFLLGPSHHYYTP 84 (291)
Q Consensus 48 ag~~ysg~~aa~ay~~l~---~~~~~~VvIlGp~H~~~~~ 84 (291)
+||.|..-+...+|..|. ..+...|++|+|++...|+
T Consensus 73 iGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFe 112 (192)
T PF06057_consen 73 IGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFE 112 (192)
T ss_pred EeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEE
Confidence 799999999999999996 3577889999999987753
No 43
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=32.56 E-value=2.4e+02 Score=24.03 Aligned_cols=112 Identities=20% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCCCCceeEeCCCccccCCCCCCCcHHHHHHHHhcCC
Q 022859 37 SPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKATGK 116 (291)
Q Consensus 37 ~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~ 116 (291)
..++.-+++||..+.+-+-+.+.++..+... ..+..+. .+ ..+. ++-.+.|-.-+|.+++|++-+.++++++.
T Consensus 18 ~~~~~i~v~NH~s~~~D~~~l~~~~~~~~~~--~~~~~la-~~-~~~~---~p~~~~~~~~~g~i~~~r~~~~~~L~~G~ 90 (212)
T cd07987 18 DEGPALLVHPHGGLPIDGALLAAAFLLLFPG--RLPRALA-DH-FLFP---LPGLRDLLRRLGAVPGSRENCVRLLREGE 90 (212)
T ss_pred CCCcEEEEECCcchhHHHHHHHHHHHHhCCC--CeeEEee-cc-ccee---CccHHHHHHHcCCcccCHHHHHHHhcCCC
Confidence 3467899999999875666665543222221 2333333 11 1111 11123444456889999988877777653
Q ss_pred ceec-ccc--------cCccccccccchHHHHHHhcCCCeeEEEEEeCC
Q 022859 117 FELM-DIC--------VDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGA 156 (291)
Q Consensus 117 ~~~~-d~~--------~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~ 156 (291)
...+ .+- ......-++.+--|.+-... .+++|||+.+-.
T Consensus 91 ~l~ifPeGtr~~~~~~~~~~~~~~~~~~G~~~lA~~-~~~pIvPv~~~G 138 (212)
T cd07987 91 LVLIFPGGAREALKSKREEYYLLWKKRKGFARLALR-AGAPIVPVFTFG 138 (212)
T ss_pred EEEEEcCCHHHHhccCCCeEEEEECCCcCHHHHHHH-cCCCeEeEEEeC
Confidence 2211 110 01112233455556665553 378999999954
No 44
>PF08502 LeuA_dimer: LeuA allosteric (dimerisation) domain; InterPro: IPR013709 This is the C-terminal regulatory (R) domain of alpha-isopropylmalate synthase, which catalyses the first committed step in the leucine biosynthetic pathway []. This domain, is an internally duplicated structure with a novel fold []. It comprises two similar units that are arranged such that the two -helices pack together in the centre, crossing at an angle of 34 degrees, sandwiched between the two three-stranded, antiparallel beta-sheets. The overall domain is thus constructed as a beta-alpha-beta three-layer sandwich []. ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process; PDB: 3HQ1_A 3HPZ_B 1SR9_A 3FIG_B 3HPS_A 3F6G_A 3F6H_A.
Probab=30.28 E-value=74 Score=25.39 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=36.4
Q ss_pred CCCcCChhHHHHHHHHHhh-CCCCCceEEEeecCCCCCCCCCCCeeEeeEEE
Q 022859 236 DNTICGRHPISVFLHMLGN-CSTKIKIKFLRYEQSSQCKTKRDSSVSYASAA 286 (291)
Q Consensus 236 ~~~~CG~~~i~~~l~~~~~-~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~ 286 (291)
..+..|.+||-++..+++. .+ .+.++.+|..-.--.+.....+.|.-+-
T Consensus 52 ~~~~~GnGpv~A~~~Al~~~~g--~~i~l~dy~~~al~~gsda~a~a~V~i~ 101 (133)
T PF08502_consen 52 TISGTGNGPVDAFFNALNKALG--IDIELIDYSEHALGSGSDAQAEAYVEIE 101 (133)
T ss_dssp EEEEEESSHHHHHHHHHHCHCC--CEEEEEEEEEEESTTSTT-EEEEEEEEE
T ss_pred EEEEECCChHHHHHHHHHHHcC--CceEEEEEEEEeccCCCCcEEEEEEEEE
Confidence 3567899999999999988 66 3799999987654455555677776654
No 45
>PLN02783 diacylglycerol O-acyltransferase
Probab=28.54 E-value=74 Score=29.62 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCEEEEECCCCCCCCCcee-----------------EeCCCccccCC--------CCCCCcHHHHHHHHhcCCcee-ccc
Q 022859 69 ISRVFLLGPSHHYYTPKCA-----------------LSTATVYKTPI--------GDLPLDLEVIEELKATGKFEL-MDI 122 (291)
Q Consensus 69 ~~~VvIlGp~H~~~~~~~~-----------------~~~~~~~~TPl--------G~~~vD~~~~~~L~~~~~~~~-~d~ 122 (291)
++.-.|++.||+..++... +....-|.+|+ |.+++|++-+.++++++.... +.+
T Consensus 99 ~~~~~I~~~nH~S~ldi~~~~~~~~~~~~p~~~~~~lak~~lf~iP~~g~~~~~~G~ipv~R~~~~~~Lk~G~sv~IfPe 178 (315)
T PLN02783 99 PNRAYVFGYEPHSVLPIGVIALADLSGFLPLPKIRALASSAVFYTPFLRHIWTWLGLDPASRKNFTSLLKAGYSCIIVPG 178 (315)
T ss_pred CCCCEEEEECCCcchhhHHHhhhhhhhccCCCchHHHhhhhhccCcHHHHHHHHcCCeEEcHHHHHHHHhCCCEEEEEcC
Confidence 4555677777776654311 11123356674 889999998888887653221 111
Q ss_pred ccC---cccccc-----ccchHHHHHHhcCCCeeEEEEEeCC
Q 022859 123 CVD---EAEHSM-----EMHLPYLAKVFEGHLIKIVPILVGA 156 (291)
Q Consensus 123 ~~~---~~EHsl-----EvqlPfL~~~~~~~~~~IVPi~vg~ 156 (291)
-.. ...++- ..+--|.+-... .+++|||+.+-.
T Consensus 179 Gtre~~~~~~~~~~~~~~~k~G~~~lA~~-~g~PIVPv~i~G 219 (315)
T PLN02783 179 GVQECLYMEHGSEVAYLKSRKGFVKIAME-TGAPLVPVFCFG 219 (315)
T ss_pred CchhhcccCCCccccccCCCCcHHHHHHH-cCCCEEEEEEEC
Confidence 110 111222 234455665553 379999998644
No 46
>TIGR02221 cas_TM1812 CRISPR-associated protein, TM1812 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1812 of Thermotoga maritima, is found also in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, a large plasmid of Synechocystis sp. PCC 6803, and Fibrobacter succinogenes S85.
Probab=28.01 E-value=3.5e+02 Score=23.93 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=27.6
Q ss_pred ccchHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCC
Q 022859 132 EMHLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHW 189 (291)
Q Consensus 132 EvqlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~~~~~liv~SsDlsH~ 189 (291)
|.|.-.++. ++ .++..+.|=.|........++-+.|...+++.+.+++ |.+|-
T Consensus 91 ~~~~~l~~~-~~-~~i~~~~IP~g~~~~~e~w~iF~~l~~~l~~~d~ii~---DITHg 143 (218)
T TIGR02221 91 ELQLKLIEK-LG-DKVLKRLIPDAVSGSKEQWDLFMSLTNEVDHGDEIYL---DITHG 143 (218)
T ss_pred HHHHhhhhh-cC-CccEEEeCCCCCCchHHHHHHHHHHHhcCCCCCEEEE---EccCc
Confidence 345555566 43 2344344333333331445565667777765554444 88985
No 47
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.93 E-value=27 Score=32.39 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=33.1
Q ss_pred chHHHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhCCCC-------eEEEEeCCCCCCCC
Q 022859 134 HLPYLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPS-------NFFSVSSDFCHWGS 191 (291)
Q Consensus 134 qlPfL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~~~~-------~liv~SsDlsH~g~ 191 (291)
-||||+.+.. +++| ||++-+.+.+...+||+-+. .+++.+ --++.|.||.-|++
T Consensus 167 ilpylERL~~--e~~I-PIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e~v~~~~~~~p~~~ 227 (352)
T COG4148 167 ILPYLERLRD--EINI-PILYVSHSLDEVLRLADRVV-VLENGKVKASGPLEEVWGSPDFPPWLP 227 (352)
T ss_pred HHHHHHHHHH--hcCC-CEEEEecCHHHHHhhhheEE-EecCCeEEecCcHHHHhcCcccCcccC
Confidence 5899999974 5555 88887777776666666543 122211 13555666666653
No 48
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=24.40 E-value=3e+02 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHHHhhC-CCCeEEEEeCCCCCCC
Q 022859 164 MYGRLFAKYVD-DPSNFFSVSSDFCHWG 190 (291)
Q Consensus 164 ~l~~~L~~~~~-~~~~liv~SsDlsH~g 190 (291)
++++.|.+.++ +++++++.|+|=+-|+
T Consensus 90 ~~a~~i~~~~~~g~~Vv~L~~GDP~~ys 117 (249)
T TIGR02434 90 IWAQAIAEELGDDGTGAFLVWGDPSLYD 117 (249)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCchHhh
Confidence 46677777554 6789999999988873
No 49
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=23.13 E-value=2.6e+02 Score=22.65 Aligned_cols=46 Identities=4% Similarity=0.027 Sum_probs=27.1
Q ss_pred HHHHHhcCCCeeEEEEEeCCCCHHHHHHHHHHHHHhhCCCCeEEEEeC
Q 022859 137 YLAKVFEGHLIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSS 184 (291)
Q Consensus 137 fL~~~~~~~~~~IVPi~vg~~~~~~~~~l~~~L~~~~~~~~~liv~Ss 184 (291)
+|+|+..+++.++|-+.+-.... -++|.++++++...|.++++-++
T Consensus 45 ~l~~~~~D~~t~~I~ly~E~~~d--~~~f~~~~~~a~~~KPVv~lk~G 90 (138)
T PF13607_consen 45 LLEYLAEDPDTRVIVLYLEGIGD--GRRFLEAARRAARRKPVVVLKAG 90 (138)
T ss_dssp HHHHHCT-SS--EEEEEES--S---HHHHHHHHHHHCCCS-EEEEE--
T ss_pred HHHHHhcCCCCCEEEEEccCCCC--HHHHHHHHHHHhcCCCEEEEeCC
Confidence 67887766688999999876554 35788888877656556666555
Done!