Query 022859
Match_columns 291
No_of_seqs 126 out of 779
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcz_A Protein MEMO1; alpha/be 100.0 4E-80 1.4E-84 566.0 30.2 286 3-289 2-292 (293)
2 3vsj_A 2-amino-5-chlorophenol 100.0 1.9E-32 6.6E-37 247.7 16.9 233 41-288 5-270 (271)
3 3vsj_B 2-amino-5-chlorophenol 100.0 7.3E-31 2.5E-35 241.6 14.2 220 57-289 37-291 (312)
4 1b4u_B LIGA, LIGB, protocatech 100.0 7E-28 2.4E-32 220.9 17.9 231 40-290 5-281 (302)
5 2pw6_A Uncharacterized protein 99.7 5.9E-17 2E-21 146.0 7.0 202 42-254 17-247 (271)
6 3nd1_A Precorrin-6A synthase/C 34.1 1.4E+02 0.0049 25.7 8.1 96 95-190 28-139 (275)
7 1ter_A Tertiapin; toxin; NMR { 33.3 3.7 0.00013 22.0 -1.5 14 42-55 7-20 (26)
8 3icv_A Lipase B, CALB; circula 27.4 91 0.0031 27.7 5.7 87 18-113 114-203 (316)
9 3qst_A Triosephosphate isomera 17.4 97 0.0033 26.8 3.5 44 4-50 4-49 (255)
10 1z9t_A Hypothetical UPF0124 pr 15.5 92 0.0031 26.9 2.9 57 41-114 130-187 (255)
No 1
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=100.00 E-value=4e-80 Score=566.00 Aligned_cols=286 Identities=52% Similarity=0.927 Sum_probs=263.2
Q ss_pred CCcccCccccccCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcCCCCCCEEEEECCCCCCC
Q 022859 3 KIRRASHAGSWYTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNIDPTSISRVFLLGPSHHYY 82 (291)
Q Consensus 3 ~~R~~~~AG~~YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~ 82 (291)
.+|+|+|||+|||+|+++|+++|+.||...+..+. .++|+|+|||||.|||++||++|+.|+..+|||||||||||+..
T Consensus 2 ~~R~~~~AG~~Yp~~~~~L~~~l~~~l~~~~~~~~-~~~~iI~PHAGy~ysG~~aa~ay~~l~~~~p~~VvilGP~H~~~ 80 (293)
T 3bcz_A 2 VCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKR-PARAIIAPHAGYTYCGSCAAHAYKQVDPSITRRIFILGPSHHVP 80 (293)
T ss_dssp CEECCTTBTTTBCSCHHHHHHHHHHHHTTSCCCSC-SCSEEEECCSCHHHHHHHHHHHHTTCCTTTCCEEEEEEECSSSC
T ss_pred CccCCccccCCCCCCHHHHHHHHHHHHhhCCCCCC-CceEEEECCCCccccHHHHHHHHHHhccCCCCEEEEECCCCCCC
Confidence 47999999999999999999999999976543232 37999999999999999999999999878899999999999999
Q ss_pred CCceeEeCCCccccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcC--CCeeEEEEEeCCCCHH
Q 022859 83 TPKCALSTATVYKTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEG--HLIKIVPILVGAVNAE 160 (291)
Q Consensus 83 ~~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~--~~~~IVPi~vg~~~~~ 160 (291)
+.++++++.+.|+||||++++|++++++|.+...+..+|...|..|||+||||||||+++++ ++++||||+||.++.+
T Consensus 81 ~~~~a~~~~~~~~TPlG~l~vD~el~~~L~~~~~~~~~d~~~~~~EHSlEv~LPfL~~~~~~~~~~~~IVPI~vg~~~~~ 160 (293)
T 3bcz_A 81 LSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSES 160 (293)
T ss_dssp CSSEEECSCSEECCSSCCEEBCHHHHHHHHHTSCEEECCHHHHHHCCTTGGGHHHHHHHTGGGTTSCEEEEEEECCCCHH
T ss_pred CCceEEccCCceECCCccCCCCHHHHHHHHhcCCcccccccccchheEEEeeHHHHHHHhCCCCCCceEEEEEcCCCCHH
Confidence 99999999999999999999999999999998777777878899999999999999999852 3799999999999999
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCCcC
Q 022859 161 NEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTIC 240 (291)
Q Consensus 161 ~~~~l~~~L~~~~~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~~~C 240 (291)
+++++|++|.+++++.+++||+||||||||+||||.|+..+.+++++.++++|+++|+.|+++|+++|++++.++++++|
T Consensus 161 ~~~~~g~~l~~~~~~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~t~C 240 (293)
T 3bcz_A 161 KEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTIC 240 (293)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEECCCCEEBGGGTBCCCCGGGCSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCccCCCCCCCCCccccccchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcCcC
Confidence 99999999999998889999999999999999999988655556789999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhCCC---CCceEEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859 241 GRHPISVFLHMLGNCST---KIKIKFLRYEQSSQCKTKRDSSVSYASAAAKV 289 (291)
Q Consensus 241 G~~~i~~~l~~~~~~~~---~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~~ 289 (291)
|.+||.++|.+++.++. ..++++|+|++|++++++++++|||++++|.+
T Consensus 241 G~~pi~~~l~a~~~~~~~~~~~~~~~l~Y~~S~~~~~~~~~~VgYas~~~~~ 292 (293)
T 3bcz_A 241 GRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTV 292 (293)
T ss_dssp THHHHHHHHHHHHHHHHTTCCEEEEEEEEEESSCCCSTTCCEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHcCcccccceEEEEEecCccCCCCCCCCEEEeeEEEEEe
Confidence 99999999999988751 14799999999999999999999999999875
No 2
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=100.00 E-value=1.9e-32 Score=247.68 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=176.1
Q ss_pred ceeeecCCc--hh--ch--HHHHHHHHHhcC----CCCCCEEEEECCCCCCCCCceeE--------eCCCccccCCCCCC
Q 022859 41 RGVIAPHAG--YS--YS--GRAAAYAFGNID----PTSISRVFLLGPSHHYYTPKCAL--------STATVYKTPIGDLP 102 (291)
Q Consensus 41 ~a~I~PHag--~~--ys--g~~aa~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~--------~~~~~~~TPlG~~~ 102 (291)
.++++||.- -. -. -.-...+|+.+. ..+||+|||+||+|......+++ .+..+|. +||+++
T Consensus 5 ~a~~~pH~P~~~l~pe~~~~~~~~~a~~~~~~~l~~~~Pd~ivvis~h~~~~~~~~~i~~~~~~~~~~~~~f~-~~g~~~ 83 (271)
T 3vsj_A 5 SAFLVPGTPLPQLKPEVPSWGQLAAATERAGKALAASRPDVVLVYSTQWLAVLDQQWLTRPRSEGVHVDENWY-EFGDLA 83 (271)
T ss_dssp EEEEECCCSHHHHCTTSHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEEESSSEEEECCSEEEEEECCTTTG-GGCCEE
T ss_pred EEEEcCCCCccCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcccccCcEEEeccCCCcccccCCch-hhcccc
Confidence 467777764 00 01 112234454443 35899999999988777666554 2356777 899865
Q ss_pred ----CcHHHHHHHHhcC---Ccee--cccccCccccccccchHHHHHHhcCCCeeEEEEEeC-CCCHHHHHHHHHHHHHh
Q 022859 103 ----LDLEVIEELKATG---KFEL--MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-AVNAENEAMYGRLFAKY 172 (291)
Q Consensus 103 ----vD~~~~~~L~~~~---~~~~--~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-~~~~~~~~~l~~~L~~~ 172 (291)
.|.+++++|.+.. ++.. .++..+..|||++|||+||+...+ ++|||||.++ ..+.+++.++|++|+++
T Consensus 84 y~~~gd~~la~~i~~~~~~~g~~~~~~~~~~~~lDHg~~vpl~~l~~~~~--~~pvv~i~~~~~~~~~~~~~lG~al~~~ 161 (271)
T 3vsj_A 84 YDIRADTALAEACVTSSPLHGVHARGVNYDGFPIDTGTITACTLMGIGTD--AFPLVVGSNNLYHSGEITEKLAALAVDC 161 (271)
T ss_dssp EEEEBCHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHTCSSS--SSCEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHHHHHHCCCcEEeecCCCCCcchhHHHHHHHHhccCC--CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999997743 3432 244578999999999999987642 5999999999 78999999999999998
Q ss_pred hC--CCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC---CcCChhHHHH
Q 022859 173 VD--DPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN---TICGRHPISV 247 (291)
Q Consensus 173 ~~--~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~---~~CG~~~i~~ 247 (291)
++ +++++||+|||+||+..+.+..+ ..+....+.+++||+++++.|.++|.++|+++..+... ..||..++.+
T Consensus 162 ~~~~~~~vlii~SGdlsH~l~~~~~~~--~~~~~~~~~a~~fD~~~~~~l~~~D~~~L~~~~~~~~~~a~g~~G~~~~~~ 239 (271)
T 3vsj_A 162 AKDQNKRVAVVGVGGLSGSLFREEIDP--REDRIANEEDDKWNRRVLKLIEAGDVSALREAMPVYAKEARVDMGFKHLHW 239 (271)
T ss_dssp HHHTTCCEEEEEECCSCCCCCSSCCCG--GGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred HHHcCCCEEEEEECccccCCcccCCCC--CCCCCCCcchHHHHHHHHHHHHCCCHHHHHhcCHHHHHHhccCCcHHHHHH
Confidence 75 78999999999999974222110 00011126789999999999999999999998776533 5699999999
Q ss_pred HHHHHhhCCCCCceEEEeecCCCCCCCCCCCeeEeeEEEEE
Q 022859 248 FLHMLGNCSTKIKIKFLRYEQSSQCKTKRDSSVSYASAAAK 288 (291)
Q Consensus 248 ~l~~~~~~~~~~~~~ll~Y~~S~~~~~~~~~~VgYas~~~~ 288 (291)
++++++..+ .++++++|++| +.|||+.+.|.
T Consensus 240 l~gal~~~~--~~~~ll~Y~~p--------~gvGy~v~~~~ 270 (271)
T 3vsj_A 240 ILGALKGKF--SGANVLGYGPS--------YGSGAAVIEFR 270 (271)
T ss_dssp HHHHTTTCC--SEEEEEEEEEE--------TTEEEEEEEEE
T ss_pred HHHhcCCCC--CCcceeeeecC--------cccceEEEEEe
Confidence 988877544 47999999998 88999999886
No 3
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=99.97 E-value=7.3e-31 Score=241.65 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=169.4
Q ss_pred HHHHHHhcC----CCCCCEEEEECCCCCCCCCceeE-----------eCCCccccCCCCCCCcHHHHHHHHhcC---Cce
Q 022859 57 AAYAFGNID----PTSISRVFLLGPSHHYYTPKCAL-----------STATVYKTPIGDLPLDLEVIEELKATG---KFE 118 (291)
Q Consensus 57 aa~ay~~l~----~~~~~~VvIlGp~H~~~~~~~~~-----------~~~~~~~TPlG~~~vD~~~~~~L~~~~---~~~ 118 (291)
...+|+.+. +.+||.|||++|+|...++.+.+ ..+..|.++-++++.|.+++++|.+.. ++.
T Consensus 37 ~~~~~~~~~~~l~~~~PdaIvviS~Hw~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~y~~~gd~eLA~~i~~~l~~~g~~ 116 (312)
T 3vsj_B 37 LRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGKSVDPIFPNVFRYDFSLNVDVELAEACAEEGRKAGLV 116 (312)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEEEEEESSSEEEECCSEEEEEEECSSCTTTCEEEEEEEBCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEcCCCCccCCeEEeccCCCCccccccCCCccCcccCCCCCCHHHHHHHHHHHHHcCCc
Confidence 345666553 34899999999977665543332 113344456677999999999998743 443
Q ss_pred e--cccccCccccccccchHHHHHHhcCCCeeEEEEEeC----CCCHH----HHHHHHHHHHHhhC--CCCeEEEEeCCC
Q 022859 119 L--MDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG----AVNAE----NEAMYGRLFAKYVD--DPSNFFSVSSDF 186 (291)
Q Consensus 119 ~--~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg----~~~~~----~~~~l~~~L~~~~~--~~~~liv~SsDl 186 (291)
. .++..+..|||++|||+||+ |+.++|||||.++ ..+.+ ++.+||++|+++++ +++++||+||||
T Consensus 117 ~~~~~~~~~~lDHG~~vpL~~l~---p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~~~~d~~Vlii~SG~l 193 (312)
T 3vsj_B 117 TKMMRNPKFRVDYGTITTLHLIR---PQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAIRKTGRKAVLLASNTL 193 (312)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHC---TTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred eeeccCccccCCcchHhHHHHhC---CCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHHHhcCCCEEEEEECcc
Confidence 2 23557899999999999998 4468999999998 47888 99999999999886 789999999999
Q ss_pred CCCCCCCCCccCCc-c-ccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC---CcCChhHHHHHHHHHhhCCCCCce
Q 022859 187 CHWGSRFNYMHYDK-K-HGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN---TICGRHPISVFLHMLGNCSTKIKI 261 (291)
Q Consensus 187 sH~g~~~g~~p~~~-~-~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~---~~CG~~~i~~~l~~~~~~~~~~~~ 261 (291)
||+++.++...... . .....+.+++||+++++.|.++|.++|+++..++.. ++||..++.+|+.+++... .++
T Consensus 194 sH~l~~~~~~~~~~~~~~~~~~~~a~~fD~~~~~~l~~gD~~~L~~~~~e~~~~a~g~cG~~~~~~l~gAl~~~~--~~~ 271 (312)
T 3vsj_B 194 SHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFKLLPQFIDEAFAEVKSGAFTWMHAAMQYPE--LAA 271 (312)
T ss_dssp CCCCCCSCCSSTTCGGGCCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCGGGGSHHHHHHHHTTCCC--CCC
T ss_pred cccCCcccccccccccccCCCCHHHHHHHHHHHHHHHcCCHHHHHhCCHHHHHHhccccCHHHHHHHHHHhcCCC--Ccc
Confidence 99997543311000 0 011237789999999999999999999999887643 8899999999988876633 468
Q ss_pred EEEeecCCCCCCCCCCCeeEeeEEEEEe
Q 022859 262 KFLRYEQSSQCKTKRDSSVSYASAAAKV 289 (291)
Q Consensus 262 ~ll~Y~~S~~~~~~~~~~VgYas~~~~~ 289 (291)
++++|++| ++|||+.+.|..
T Consensus 272 ~ll~Y~~s--------~gvGy~~~~~~~ 291 (312)
T 3vsj_B 272 ELFGYGTV--------IGTGNAVMEWDL 291 (312)
T ss_dssp EEEEEEEE--------TTEEEEEEEEEH
T ss_pred eEEeeECC--------ccceEEEEEEEc
Confidence 99999998 889999999863
No 4
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=99.95 E-value=7e-28 Score=220.89 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=169.2
Q ss_pred cceeeecCCchhch--H---------HHHHHHHHhcC----C--CCCCEEEEECCCCCCCCCc-----eeEeCCCc---c
Q 022859 40 VRGVIAPHAGYSYS--G---------RAAAYAFGNID----P--TSISRVFLLGPSHHYYTPK-----CALSTATV---Y 94 (291)
Q Consensus 40 ~~a~I~PHag~~ys--g---------~~aa~ay~~l~----~--~~~~~VvIlGp~H~~~~~~-----~~~~~~~~---~ 94 (291)
+.|+++||.--... + +-...+|+.+. . .+||+|||+||+|+..+.. +++..... |
T Consensus 5 v~~~~~sH~P~i~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~~~Pd~Ivvis~~H~~~~~~~~~~~~~I~~~~~~~~~ 84 (302)
T 1b4u_B 5 TTGITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWIKQPGNMPDVVILVYNDHASAFDMNIIPTFAIGCAETFKPA 84 (302)
T ss_dssp EEEEEECCCHHHHHHHHHTCTTSTTTHHHHHHHHHHHHHHTSTTTSCSEEEEEECCCSSSCCTTEEESBEEECSSEECBC
T ss_pred hEEeECCCCCcccCccccCCcchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCcccccccccCCceEEecCCCCccC
Confidence 34678888543221 0 13455666663 4 6899999999999977532 67766555 9
Q ss_pred ccCCCCCCCc-----HHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCC-----HHH
Q 022859 95 KTPIGDLPLD-----LEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVN-----AEN 161 (291)
Q Consensus 95 ~TPlG~~~vD-----~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~-----~~~ 161 (291)
.+|+|.+++| .+++++|.+.. ++.......+..|||++|||+||+....+..+|||||.++... .++
T Consensus 85 d~~~G~~~~~~~~G~peLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vpL~~l~p~~d~~~ipVVpisv~~~~~p~~~~~~ 164 (302)
T 1b4u_B 85 DEGWGPRPVPDVKGHPDLAWHIAQSLILDEFDMTIMNQMDVDHGCTVPLSMIFGEPEEWPCKVIPFPVNVVTYPPPSGKR 164 (302)
T ss_dssp BCSSSBCSSCCEECCHHHHHHHHHHHHHTTCCCEEESSCCBCHHHHHHHHHHHCSCSSCSSEEEEEEBCCSSSCCCCHHH
T ss_pred cccCCCcCCCCCCCCHHHHHHHHHHHHhcCCCeeccCCcCCCceeeehHHHhcCcccCCcCcEEEEeecCCCCCCCCHHH
Confidence 9999999998 99999997753 3332211347899999999999886541001999999999754 688
Q ss_pred HHHHHHHHHHhh----CCCCeEEEEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHHcCChHHHHHHHHhcCC
Q 022859 162 EAMYGRLFAKYV----DDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDN 237 (291)
Q Consensus 162 ~~~l~~~L~~~~----~~~~~liv~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~~~~~ 237 (291)
+.+||++|++++ ++++|+||+||||||+.+.- +.+ ..+++||+++++.| ++|.++|+++..+...
T Consensus 165 ~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~---~~g-------~~~~~fD~~~~~~l-~~d~~~L~~~~~~~~a 233 (302)
T 1b4u_B 165 CFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGP---RAG-------LINKEFDLNFIDKL-ISDPEELSKMPHIQYL 233 (302)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSST---TTT-------BCCHHHHHHHHHHH-HHCHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCC---cCc-------cchHHHHHHHHHHH-ccCHHHHHhcccchHH
Confidence 999999999987 46789999999999997521 111 13489999999999 9999999888776667
Q ss_pred CcCChhH--HHHHHHHHhhCCCCCceEEEeec--CCCCCCCCCCCeeEeeEEEEEec
Q 022859 238 TICGRHP--ISVFLHMLGNCSTKIKIKFLRYE--QSSQCKTKRDSSVSYASAAAKVD 290 (291)
Q Consensus 238 ~~CG~~~--i~~~l~~~~~~~~~~~~~ll~Y~--~S~~~~~~~~~~VgYas~~~~~~ 290 (291)
+.||..+ +..++.++..++. .+.+++.|+ .+ +.|||+.+.|...
T Consensus 234 ~~ag~~~~~~~~~~~~~GA~~~-~~~~~~~y~~~p~--------~~tG~~~~~~~~~ 281 (302)
T 1b4u_B 234 RESGSEGVELVMWLIMRGALPE-KVRDLYTFYHIPA--------SNTALGAMILQPE 281 (302)
T ss_dssp HHHCTTGGGGHHHHHHHHTSCS-CEEEEEEEEEEEE--------TTEEEEEEEEEEG
T ss_pred HHcCCChhHHHHHHHHHHcCCC-CCCcEEEEeccCC--------cceeeEEEEEecC
Confidence 7888765 3444555555554 368888888 43 6799999998653
No 5
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=99.66 E-value=5.9e-17 Score=146.00 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=139.3
Q ss_pred eeeecCCchhc--hHHHHHHHHHhcCC--CCCCEEEEECCCCCCCCCceeEeCCCcccc-------C--C----CCCCCc
Q 022859 42 GVIAPHAGYSY--SGRAAAYAFGNIDP--TSISRVFLLGPSHHYYTPKCALSTATVYKT-------P--I----GDLPLD 104 (291)
Q Consensus 42 a~I~PHag~~y--sg~~aa~ay~~l~~--~~~~~VvIlGp~H~~~~~~~~~~~~~~~~T-------P--l----G~~~vD 104 (291)
.+.++|-+... ....+..+++.+.. .+||.|||+++++.... .++......+| | + ...+.|
T Consensus 17 ~~flsHGsP~~~~~~~~~~~~l~~l~~~l~~P~aIvviSaHw~~~~--~~V~~~~~~~~i~Df~gfp~~ly~~~y~~~g~ 94 (271)
T 2pw6_A 17 ALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVVVSAHWFTRG--TGVTAMETPPTIHDFGGFPQALYDTHYPAPGS 94 (271)
T ss_dssp EEEEECC-CCCCSSCCHHHHHHHHHHHHSCCCSEEEEEEEEEEESS--EEEECCCC-------------CCSCCCCCCBC
T ss_pred EEEECCCCCccCCCchHHHHHHHHHHHhCCCCCEEEEEcCCCCCCc--eEEEeCCCCCCcCCcCcCCCcCcccccCCCCC
Confidence 55567754421 11235566776642 28999999999433333 44444333332 3 2 367899
Q ss_pred HHHHHHHHhcC---CceecccccCccccccccchHHHHHHhcCCCeeEEEEEeC-CCCHHHHHHHHHHHHHhhCCCCeEE
Q 022859 105 LEVIEELKATG---KFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVG-AVNAENEAMYGRLFAKYVDDPSNFF 180 (291)
Q Consensus 105 ~~~~~~L~~~~---~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg-~~~~~~~~~l~~~L~~~~~~~~~li 180 (291)
.++++++.+.. ++.. +......||+.-|+|-| ++|+.++|||||.++ ..+++++.+||++|+++ ++++|+|
T Consensus 95 peLA~~i~~~l~~~g~~~-~~~~~glDHG~~vPL~~---m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~l-rd~~VlI 169 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTL-DKEAWGFDHGSWGVLIK---MYPDADIPMVQLSIDSSKPAAWHFEMGRKLAAL-RDEGIML 169 (271)
T ss_dssp HHHHHHHHHHHTTSCEEE-ESSCCCCCHHHHHHHHH---HSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGG-GGGTEEE
T ss_pred HHHHHHHHHHHHhcCCcc-cccccCCCcchhhhHHH---hcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHH-HHcCcEE
Confidence 99999987754 4432 22456789999988776 567678999999998 47889999999999884 5678999
Q ss_pred EEeCCCCCCCCCCCCccCCccccchhHHHHHHHHHHHHHHH-cC--ChHHHHHHHHhcCCCcC-----ChhHHHHHHHHH
Q 022859 181 SVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIE-TG--DPDAFKKYLLEYDNTIC-----GRHPISVFLHML 252 (291)
Q Consensus 181 v~SsDlsH~g~~~g~~p~~~~~~~~~~~~~~~D~~~i~~i~-~~--d~~~~~~~~~~~~~~~C-----G~~~i~~~l~~~ 252 (291)
|+|+++||.....++.. . ......+++||+++++.|. ++ |.+++.++..+.....| +..|+.++++++
T Consensus 170 igSG~lsHnL~~~~~~~--~--~~~~~~~~eFD~~~~~~l~~~g~~d~~~L~~~~~~~~a~~a~p~~eh~~pl~~alGa~ 245 (271)
T 2pw6_A 170 VASGNVVHNLRTVKWHG--D--SSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTLSNPTPEHYLPLLYVLGAW 245 (271)
T ss_dssp EEEECSSCCTTSCCSSS--C--CCCCHHHHHHHHHHHTTTTCCSCGGGCTTTSGGGSTTHHHHCSSSTTTHHHHHHHHTC
T ss_pred EEeCccccCCCcccccC--c--CCCCchHHHHHHHHHHHHHhcCCcCHHHHhCcccChhHHHhCCchHhHHHHHHHHhCC
Confidence 99999999987654420 0 0113678999999999999 89 99999887654444445 888877777776
Q ss_pred hh
Q 022859 253 GN 254 (291)
Q Consensus 253 ~~ 254 (291)
..
T Consensus 246 ~~ 247 (271)
T 2pw6_A 246 DG 247 (271)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 6
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=34.14 E-value=1.4e+02 Score=25.74 Aligned_cols=96 Identities=8% Similarity=0.000 Sum_probs=47.9
Q ss_pred ccCCCCCCCcHHHHHHHHhcCCceecccccCccccccccchHHHHHHhcCCCeeEEEEEeCCCCH-------------H-
Q 022859 95 KTPIGDLPLDLEVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHLIKIVPILVGAVNA-------------E- 160 (291)
Q Consensus 95 ~TPlG~~~vD~~~~~~L~~~~~~~~~d~~~~~~EHslEvqlPfL~~~~~~~~~~IVPi~vg~~~~-------------~- 160 (291)
.++-|+...=+--+.+++++.+....++.....++-+.+....|+++.+..+.+++++-.+.... +
T Consensus 28 G~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y~~~~~~~~~~ 107 (275)
T 3nd1_A 28 GIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSYRKGVDDWHDA 107 (275)
T ss_dssp ECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC---------CHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccchhhhhhhhhhHh
Confidence 44555533222123344455554443333222223233345677776542136888776543221 1
Q ss_pred HHHHHHHHHHHhhC--CCCeEEEEeCCCCCCC
Q 022859 161 NEAMYGRLFAKYVD--DPSNFFSVSSDFCHWG 190 (291)
Q Consensus 161 ~~~~l~~~L~~~~~--~~~~liv~SsDlsH~g 190 (291)
....+.+.|.+.++ +++++++.|+|=+=|+
T Consensus 108 ~~~~~~~~i~~~l~~~G~~Va~l~~GDP~i~~ 139 (275)
T 3nd1_A 108 IAETWLSEITAHVPGLEGRVALLVWGDPSLYD 139 (275)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEEESBCTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCcccc
Confidence 11234555655554 4678888888888775
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=33.32 E-value=3.7 Score=22.00 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.5
Q ss_pred eeeecCCchhchHH
Q 022859 42 GVIAPHAGYSYSGR 55 (291)
Q Consensus 42 a~I~PHag~~ysg~ 55 (291)
-+|.||.-|.-.|+
T Consensus 7 riiiphmcwkkcgk 20 (26)
T 1ter_A 7 RIIIPHMCWKKCGK 20 (26)
T ss_dssp SSSCCHHHHHHHHC
T ss_pred cEechhHHHHHhCc
Confidence 47899999987775
No 8
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A*
Probab=27.43 E-value=91 Score=27.68 Aligned_cols=87 Identities=10% Similarity=0.169 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcceeeecCCchhchHHHHHHHHHhcC--CCCCCEEEEECCCCCCCCCceeEeCCCccc
Q 022859 18 SKRLAEELDGWLREAGLPKSPEVRGVIAPHAGYSYSGRAAAYAFGNID--PTSISRVFLLGPSHHYYTPKCALSTATVYK 95 (291)
Q Consensus 18 ~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~~ysg~~aa~ay~~l~--~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~ 95 (291)
.+++.+.|+..++..+. . +..|+ |+...|.++.++.+... ..+.+++|.|||.|++..-.-.+... .+-
T Consensus 114 ~~~la~~I~~l~~~~g~---~--~v~LV---GHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~Gt~~a~l~~~~-~~~ 184 (316)
T 3icv_A 114 TEYMVNAITTLYAGSGN---N--KLPVL---TWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGPLDAL-AVS 184 (316)
T ss_dssp HHHHHHHHHHHHHHTTS---C--CEEEE---EETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBSCC-------CCC
T ss_pred HHHHHHHHHHHHHHhCC---C--ceEEE---EECHHHHHHHHHHHhccccchhhceEEEECCCCCCchhhhhhhhc-ccc
Confidence 45666666666654321 1 23333 66777877755444442 45778999999988765321111100 000
Q ss_pred cC-CCCCCCcHHHHHHHHh
Q 022859 96 TP-IGDLPLDLEVIEELKA 113 (291)
Q Consensus 96 TP-lG~~~vD~~~~~~L~~ 113 (291)
+| .-++..+.++.++|.+
T Consensus 185 ~~a~~q~~~gS~fl~~Ln~ 203 (316)
T 3icv_A 185 APSVWQQTTGSALTTALRN 203 (316)
T ss_dssp CHHHHHTBTTCHHHHHHHH
T ss_pred ChhHHhhCCCCHHHHHHhh
Confidence 01 1125556677777765
No 9
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=17.44 E-value=97 Score=26.76 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=30.5
Q ss_pred CcccCccccc--cCCCHHHHHHHHHHHHHhcCCCCCCCcceeeecCCch
Q 022859 4 IRRASHAGSW--YTDNSKRLAEELDGWLREAGLPKSPEVRGVIAPHAGY 50 (291)
Q Consensus 4 ~R~~~~AG~~--YP~~~~~L~~~l~~~~~~~~~~~~~~~~a~I~PHag~ 50 (291)
.|+|-++|.| ||.+.++..++++.+..... + .+...+|+|=.-|
T Consensus 4 mr~~~i~gNWKmn~~~~~~~~~l~~~l~~~~~--~-~~~ev~v~Pp~~~ 49 (255)
T 3qst_A 4 MRTFFVGGNWKANPKTVQEAEKLVEMLNGAKV--E-GNVEVVVAAPFVF 49 (255)
T ss_dssp -CCCEEEEECCSCCSSHHHHHHHHHHHHTCCC--C-SSCEEEEECCGGG
T ss_pred CCCcEEEEEhhcccCCHHHHHHHHHHHHhhcc--c-CCceEEEeCCHHH
Confidence 3899999999 78889998888877653221 1 2355677776654
No 10
>1z9t_A Hypothetical UPF0124 protein YFIH; putative laccase, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; HET: CIT; 1.54A {Escherichia coli} PDB: 1xaf_A 1u05_A 1rw0_A
Probab=15.52 E-value=92 Score=26.88 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=35.7
Q ss_pred ceeeecCCchh-chHHHHHHHHHhcCCCCCCEEEEECCCCCCCCCceeEeCCCccccCCCCCCCcHHHHHHHHhc
Q 022859 41 RGVIAPHAGYS-YSGRAAAYAFGNIDPTSISRVFLLGPSHHYYTPKCALSTATVYKTPIGDLPLDLEVIEELKAT 114 (291)
Q Consensus 41 ~a~I~PHag~~-ysg~~aa~ay~~l~~~~~~~VvIlGp~H~~~~~~~~~~~~~~~~TPlG~~~vD~~~~~~L~~~ 114 (291)
..+-+-||||. -.+.+...+.+.+.....+.++.|||+= .. . -.+|+.|+++++.+.
T Consensus 130 ~vVaa~HAGWrGt~~gI~~~tv~~m~~~~~di~a~iGPsI---------~~-~-------~YEVg~ev~~~F~~~ 187 (255)
T 1z9t_A 130 TEVAAAHAGWRGLCAGVLEETVSCFADNPENILAWLGPAI---------GP-R-------AFEVGGEVREAFMAV 187 (255)
T ss_dssp SCEEEEEECHHHHHHTHHHHHHHTCCSCGGGEEEEECSCC---------CT-T-------TCEECHHHHHHHHHH
T ss_pred CEEEEecCCchhhHhhHHHHHHHHHhCCcccEEEEECccc---------CC-c-------ceeECHHHHHHHHhh
Confidence 34555699997 3455556677766644345678899831 11 0 146788888887654
Done!