Query 022861
Match_columns 291
No_of_seqs 122 out of 217
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06454 DUF1084: Protein of u 100.0 3.1E-73 6.6E-78 524.2 23.6 271 21-291 11-281 (281)
2 PF04479 RTA1: RTA1 like prote 84.5 9.6 0.00021 34.1 9.8 133 141-283 72-214 (226)
3 PF06664 MIG-14_Wnt-bd: Wnt-bi 74.9 72 0.0016 29.6 17.7 22 114-135 122-143 (298)
4 PF04123 DUF373: Domain of unk 66.0 1.1E+02 0.0023 29.6 11.7 91 138-239 155-245 (344)
5 TIGR02357 thia_yuaJ probable p 45.3 1.2E+02 0.0027 26.3 7.8 61 220-280 112-177 (183)
6 PF02117 7TM_GPCR_Sra: Serpent 44.0 2.3E+02 0.0049 26.8 10.1 19 178-196 195-213 (328)
7 PF03189 Otopetrin: Otopetrin; 43.5 3.4E+02 0.0074 26.9 13.9 84 200-289 297-384 (441)
8 PF10319 7TM_GPCR_Srj: Serpent 43.1 1E+02 0.0022 29.2 7.4 123 84-207 68-232 (310)
9 COG5264 VTC1 Vacuolar transpor 33.1 86 0.0019 25.7 4.5 53 176-230 60-112 (126)
10 PF10323 7TM_GPCR_Srv: Serpent 30.4 1.8E+02 0.0038 26.7 6.8 22 62-83 21-42 (283)
11 PF13687 DUF4153: Domain of un 23.3 2.3E+02 0.005 24.9 6.0 39 53-91 138-176 (217)
12 KOG1589 Uncharacterized conser 22.7 80 0.0017 25.4 2.5 23 38-60 75-97 (118)
13 PF11044 TMEMspv1-c74-12: Plec 22.3 81 0.0017 21.2 2.1 16 189-204 17-32 (49)
14 PF04193 PQ-loop: PQ loop repe 21.3 2.2E+02 0.0047 19.4 4.4 50 40-91 4-54 (61)
15 TIGR00912 2A0309 spore germina 21.3 3.6E+02 0.0077 25.2 7.2 31 30-66 34-64 (359)
16 PF07444 Ycf66_N: Ycf66 protei 21.3 1.7E+02 0.0037 22.3 4.0 28 171-198 32-59 (84)
17 PF03620 IBV_3C: IBV 3C protei 20.8 1.3E+02 0.0029 23.0 3.3 31 21-60 5-35 (93)
18 PF05875 Ceramidase: Ceramidas 20.7 6.2E+02 0.014 22.7 11.4 36 23-58 12-49 (262)
19 PF10326 7TM_GPCR_Str: Serpent 20.7 59 0.0013 29.9 1.7 22 186-207 208-229 (307)
No 1
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=100.00 E-value=3.1e-73 Score=524.19 Aligned_cols=271 Identities=66% Similarity=1.147 Sum_probs=263.7
Q ss_pred ccccccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHhhhheeeeeehhhhhhch
Q 022861 21 TSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGFHMQVFLLHP 100 (291)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~La~ly~ll~~~~~~QL~ri~~r~~~~~~t~qkvf~lL~~l~~~~R~i~F~~~~~~~~~~~ 100 (291)
.|||+|.|++++||+|++|+||++|++++++|++|++|+++|.|+++||+||+||+++++++++|++||++.+++...++
T Consensus 11 ~~w~~~~~~~~~~~~~~~~~La~iy~~v~~~aliQl~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~iyF~~~~~~~~~~~ 90 (281)
T PF06454_consen 11 NDWWNDVNESDKWQDGLFYALAAIYLLVALVALIQLIRIQYRVPKYGWTTQKVFHLLIFLANLVRAIYFFLLPSVFLIDP 90 (281)
T ss_pred cchHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeccccCccHHHHHHHHHHHHHHHHeEEEEEhHhhHhcCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCcceeEEEehhHHHHHHHHHhhheeeccccchHHHHHHHHHH
Q 022861 101 KVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIA 180 (291)
Q Consensus 101 ~~~~~iL~~lP~~lfFstf~LLvlfWa~i~~~a~~~~~~~l~~~f~~iN~iiy~~~i~i~i~~~~~~~~~~~i~~~~~~a 180 (291)
+..+++|+++|+++|||+|+++++||+|+||++++..++|+|+.|.++|+++|++++++|++.+.++.+.++++++.++|
T Consensus 91 ~~~~~iL~~lP~~lfFSty~llvlfWaeIy~~ar~~~~~~l~~~~~~iN~~iY~~~i~i~i~~~~~~~~~v~~i~~~~~A 170 (281)
T PF06454_consen 91 NVLDYILNDLPTFLFFSTYTLLVLFWAEIYYQARSVSTDKLRPIFIVINVVIYLFQIIIWILLFFSPSSTVSIIYAIFIA 170 (281)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhheecccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999889999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhccccccccccceeeeeeeeehhHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHH
Q 022861 181 VVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYY 260 (291)
Q Consensus 181 ~isll~a~~F~~yG~kL~~~lr~~~~es~~~~~kl~~v~~vt~ic~~~F~~R~i~~l~~~~~~~~~~~~~~~~~~~~i~y 260 (291)
++++++|+||++||+|++.|||++|.|+++|++|++|++.+|.+|++||++||+++++++++++.|+|..++++++++||
T Consensus 171 ~isli~a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~~~~~~~~~~~~d~~~~~i~~~iyy 250 (281)
T PF06454_consen 171 VISLIAALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMVLFSAFDKPANLDVLSHPILNFIYY 250 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888899889999999999
Q ss_pred HHHHHhhHHhhHhhhccCCCCCCCCCcccCC
Q 022861 261 MLVEILPSALVLYILRKLPPKRISAQYHPIR 291 (291)
Q Consensus 261 ~i~EilPs~lvL~~~r~~p~~~~~~~~~~~~ 291 (291)
+++|++|++++||++||+|||++++|||||+
T Consensus 251 ~i~EivPs~lvL~~~r~lPp~~~~~~~~~~~ 281 (281)
T PF06454_consen 251 FITEIVPSALVLYILRKLPPKRASAQYHPIR 281 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcccccCCCCC
Confidence 9999999999999999999999999999996
No 2
>PF04479 RTA1: RTA1 like protein; InterPro: IPR007568 This family is comprised of fungal proteins with multiple transmembrane regions. RTA1 (P53047 from SWISSPROT) is involved in resistance to 7-aminocholesterol [], while RTM1 (P40113 from SWISSPROT) confers resistance to an unknown toxic chemical in molasses []. These proteins may bind to the toxic substance, and thus prevent toxicity. They are not thought to be involved in the efflux of xenobiotics [].; GO: 0006950 response to stress, 0016021 integral to membrane
Probab=84.48 E-value=9.6 Score=34.14 Aligned_cols=133 Identities=19% Similarity=0.181 Sum_probs=67.5
Q ss_pred ceeEEEehhHHHHHHHHHhhheeec-ccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccccccc----cc
Q 022861 141 LRIFYISVNGIIYFIQVCIWVYLWI-DDS---SAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKG----RR 212 (291)
Q Consensus 141 l~~~f~~iN~iiy~~~i~i~i~~~~-~~~---~~~~i~~~~~~a~isll~a~~F~~yG~kL~~~lr~~~~es~~----~~ 212 (291)
....|+..+++..++|.+--.+... +.. +.+.+.--.+|.+...+..+....+-.|+ ++.+.+.+. .+
T Consensus 72 ~~~iFv~~Dv~s~~lQ~~Gg~l~~~~~s~~~G~~i~iaGl~~Ql~~~~~F~~~~~~f~~r~----~~~~~~~~~~~~~~~ 147 (226)
T PF04479_consen 72 YTKIFVTLDVISLVLQAAGGGLAASANSRKTGRNIVIAGLALQLAFFGIFLILALRFHYRL----RRRPRKAVHRNRPKS 147 (226)
T ss_pred hhHHHHHHHHHHHHHhhcCcceeeecccccCCCEEEEehHHHHHHHHHHHHHHHHHHHHHH----hcccccccccccccc
Confidence 3457788888888888765443322 111 11111111222222211122222333333 333322221 12
Q ss_pred eeeeeeeeehhHHHHHHHHHHHHHHHH-hccCCCCCCccchhHHHHHHHHHHHHhhHHhhHhhhcc-CCCCCC
Q 022861 213 KKLHEVGSVTAICFTCFLIRCFVVVLS-AFDKDASLDVMDHPVLNLIYYMLVEILPSALVLYILRK-LPPKRI 283 (291)
Q Consensus 213 ~kl~~v~~vt~ic~~~F~~R~i~~l~~-~~~~~~~~~~~~~~~~~~i~y~i~EilPs~lvL~~~r~-~p~~~~ 283 (291)
++.+.....-.+.+++-.+||++=+.- +.+.+. ....|. .++.+.|-+|..+....+.- -||+..
T Consensus 148 ~~~~~~~~~L~~a~~li~iR~iyR~vE~~~G~~g--~l~~~E----~~fyvlDa~~m~l~~~~~~v~~hpg~~ 214 (226)
T PF04479_consen 148 WRWRIFLIALYVASLLILIRSIYRLVEFAQGWDG--YLMTHE----WYFYVLDALPMLLAMVILNVWFHPGYI 214 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhheecCCCCC--CchHhH----HHHHHHHHHHHHHHHHHHHhhcCchhh
Confidence 222344455556777888999986542 211111 112344 45778999999999988887 777764
No 3
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=74.86 E-value=72 Score=29.59 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 022861 114 LFFSTYTLLVLFWAEIYHQARS 135 (291)
Q Consensus 114 lfFstf~LLvlfWa~i~~~a~~ 135 (291)
.+=.-++.+.+||--+++.-+.
T Consensus 122 ~q~~F~~~Ll~FwL~~~~~~r~ 143 (298)
T PF06664_consen 122 FQSIFYAYLLLFWLVFFDSLRM 143 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444577888999999976653
No 4
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=65.96 E-value=1.1e+02 Score=29.58 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCcceeEEEehhHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccccccccccceeeee
Q 022861 138 TDKLRIFYISVNGIIYFIQVCIWVYLWIDDSSAAEFIGKIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHE 217 (291)
Q Consensus 138 ~~~l~~~f~~iN~iiy~~~i~i~i~~~~~~~~~~~i~~~~~~a~isll~a~~F~~yG~kL~~~lr~~~~es~~~~~kl~~ 217 (291)
.++.++.+..+-.++.++.-+..+..+ .+.....+.+++|+.+++.|..+...+++...+.+. .-...|
T Consensus 155 Dp~~~~~~lGvPG~~lLiy~i~~l~~~----------~~~a~~~i~~~iG~yll~kGfgld~~~~~~~~~~~~-~l~~g~ 223 (344)
T PF04123_consen 155 DPEYRRTFLGVPGLILLIYAILALLGY----------PAYALGIILLLIGLYLLYKGFGLDDYLREWLERFRE-SLYEGR 223 (344)
T ss_pred ChhhhceeecchHHHHHHHHHHHHHcc----------hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcc-ccccce
Confidence 445677777444655544433333221 223456678888999999999999888876555432 222336
Q ss_pred eeeehhHHHHHHHHHHHHHHHH
Q 022861 218 VGSVTAICFTCFLIRCFVVVLS 239 (291)
Q Consensus 218 v~~vt~ic~~~F~~R~i~~l~~ 239 (291)
+..+|.+.+....+=+++.-+.
T Consensus 224 it~ityvva~~l~iig~i~g~~ 245 (344)
T PF04123_consen 224 ITFITYVVALLLIIIGIIYGYL 245 (344)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777666665544
No 5
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=45.31 E-value=1.2e+02 Score=26.27 Aligned_cols=61 Identities=26% Similarity=0.246 Sum_probs=29.9
Q ss_pred eehhHHHHHHHHHHHHHHHHh--ccCCCCCCccchhHHHH---HHHHHHHHhhHHhhHhhhccCCC
Q 022861 220 SVTAICFTCFLIRCFVVVLSA--FDKDASLDVMDHPVLNL---IYYMLVEILPSALVLYILRKLPP 280 (291)
Q Consensus 220 ~vt~ic~~~F~~R~i~~l~~~--~~~~~~~~~~~~~~~~~---i~y~i~EilPs~lvL~~~r~~p~ 280 (291)
.+..-+.++...|.+..+.+. ++.+.-.+..+-|..+. ..|.+.|.+=+..++..+.+..|
T Consensus 112 ~i~~g~iv~~~~r~~~~~i~g~iffg~yAp~g~~~~~ysl~yn~~~~~~e~ii~~iv~~~l~~~~~ 177 (183)
T TIGR02357 112 KIILGSLVASLLRYFWHFIAGVIFWGSYAPKGMSAWLYSLIYNGSSALVEALICAIVLILLPKKAP 177 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334455566667777765442 21111111112222222 33577777767776766665444
No 6
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=43.96 E-value=2.3e+02 Score=26.78 Aligned_cols=19 Identities=11% Similarity=0.474 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022861 178 FIAVVSFIAALGFLLYGGR 196 (291)
Q Consensus 178 ~~a~isll~a~~F~~yG~k 196 (291)
..+++.+++.+...+|-.|
T Consensus 195 ~l~i~~~i~s~~l~~~nkk 213 (328)
T PF02117_consen 195 VLTIFNLIVSIFLMYYNKK 213 (328)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666655555544
No 7
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=43.47 E-value=3.4e+02 Score=26.91 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=42.7
Q ss_pred HhccccccccccceeeeeeeeehhHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHh----hHHhhHhhh
Q 022861 200 MLRRFPIESKGRRKKLHEVGSVTAICFTCFLIRCFVVVLSAFDKDASLDVMDHPVLNLIYYMLVEIL----PSALVLYIL 275 (291)
Q Consensus 200 ~lr~~~~es~~~~~kl~~v~~vt~ic~~~F~~R~i~~l~~~~~~~~~~~~~~~~~~~~i~y~i~Eil----Ps~lvL~~~ 275 (291)
++|+.+.+.+.+.+.+-.+.. .++..+...-|.+-++.......+.+ .+... +.+.+.+++ =+.+++-..
T Consensus 297 ~~r~l~~~~~~~~~~LD~iLL--~va~~G~~ly~~fsIia~~~~~~~~~-~~~l~---l~~~ll~iiQv~~QtlFIl~a~ 370 (441)
T PF03189_consen 297 RMRKLKFSSKNPGRSLDVILL--VVAAFGEFLYSYFSIIAGIFTDPHGS-LNWLN---LIYSLLRIIQVTLQTLFILDAS 370 (441)
T ss_pred HhhhccccccCccccHhHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCC-cChHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 466655544444455544333 45566666667776665432211111 11211 223334433 345777777
Q ss_pred ccCCCCCCCCCccc
Q 022861 276 RKLPPKRISAQYHP 289 (291)
Q Consensus 276 r~~p~~~~~~~~~~ 289 (291)
|+.+.++...+.+|
T Consensus 371 rR~~~~~~~~~~kp 384 (441)
T PF03189_consen 371 RRRCSSEEQQRRKP 384 (441)
T ss_pred hccccccccccchH
Confidence 77776666655665
No 8
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=43.07 E-value=1e+02 Score=29.23 Aligned_cols=123 Identities=12% Similarity=0.192 Sum_probs=60.9
Q ss_pred hhheeeeeehhhhhhc-hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcc-CC-CCcceeEEEehhHHHHHHHHHhh
Q 022861 84 VRAVVFGFHMQVFLLH-PKVLTLVVLDLPGLLFFSTYTLLVLFWAEIYHQARS-LP-TDKLRIFYISVNGIIYFIQVCIW 160 (291)
Q Consensus 84 ~R~i~F~~~~~~~~~~-~~~~~~iL~~lP~~lfFstf~LLvlfWa~i~~~a~~-~~-~~~l~~~f~~iN~iiy~~~i~i~ 160 (291)
-|-.++.+..+|--.+ ++.. ..+...=.-+--.+|.+|..-..-=|-.-++ +. .+..+|.+....+...+...+.|
T Consensus 68 yry~F~~fi~dG~F~~~s~l~-~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W 146 (310)
T PF10319_consen 68 YRYAFVVFISDGPFFEKSELG-QHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASW 146 (310)
T ss_pred cceEEEEEEcCCcCcCcchHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3544555544443222 3333 3344444445567888887654333322221 11 23344666666666555555555
Q ss_pred hee-----eccc------------------cc----------h-HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHh
Q 022861 161 VYL-----WIDD------------------SS----------A-AEFIGK-----IFIAVVSFIAALGFLLYGGRLFFML 201 (291)
Q Consensus 161 i~~-----~~~~------------------~~----------~-~~i~~~-----~~~a~isll~a~~F~~yG~kL~~~l 201 (291)
... +.|+ .| . -+.... ....++|...-..+...|.|+-+|+
T Consensus 147 ~~ic~~~~~ad~EiR~YIre~F~e~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL 226 (310)
T PF10319_consen 147 HVICYFCMYADDEIRDYIRESFREVYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKL 226 (310)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 1111 11 0 112222 2234455555566889999999999
Q ss_pred cccccc
Q 022861 202 RRFPIE 207 (291)
Q Consensus 202 r~~~~e 207 (291)
++...+
T Consensus 227 ~~~~~~ 232 (310)
T PF10319_consen 227 NKMSST 232 (310)
T ss_pred hhchhh
Confidence 765443
No 9
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.08 E-value=86 Score=25.70 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhccccccccccceeeeeeeeehhHHHHHHH
Q 022861 176 KIFIAVVSFIAALGFLLYGGRLFFMLRRFPIESKGRRKKLHEVGSVTAICFTCFL 230 (291)
Q Consensus 176 ~~~~a~isll~a~~F~~yG~kL~~~lr~~~~es~~~~~kl~~v~~vt~ic~~~F~ 230 (291)
+.+.|.++.+.+++..+|..++|.+ |...+..++...--.+.+- +++|++.++
T Consensus 60 g~~~a~vftivaif~~~ya~~lY~k-Ra~~Ir~R~~~pyDD~~GP-~lv~vvL~v 112 (126)
T COG5264 60 GMISAYVFTIVAIFCGFYALMLYLK-RAVNIRQRSAGPYDDRLGP-TLVCVVLLV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCccccCC-chhHHHHHH
Confidence 4456788899999999999999954 4333333322111113443 355665554
No 10
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=30.40 E-value=1.8e+02 Score=26.74 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=13.2
Q ss_pred hcCCcccchhHHHHHHHHHHHh
Q 022861 62 RVPEYGWTTQKVFHLMNFIVNG 83 (291)
Q Consensus 62 r~~~~~~t~qkvf~lL~~l~~~ 83 (291)
+.|++..+.+..||-++...+.
T Consensus 21 ~~r~~~~~~~~~Fy~l~~~~~i 42 (283)
T PF10323_consen 21 KLRKRSKTFKSTFYTLLIQHCI 42 (283)
T ss_pred HcccCccccCCHHHHHHHHHHH
Confidence 4434444567788877776553
No 11
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=23.32 E-value=2.3e+02 Score=24.92 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcccchhHHHHHHHHHHHhhhheeeee
Q 022861 53 LIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGF 91 (291)
Q Consensus 53 ~~QL~ri~~r~~~~~~t~qkvf~lL~~l~~~~R~i~F~~ 91 (291)
..|.+-+..|..++|||..+..-.++.++...=++++.+
T Consensus 138 ~l~~~ai~~RI~qYGlT~~R~~~~~~~~~~~~~~l~~~~ 176 (217)
T PF13687_consen 138 VLAFYAIWLRISQYGLTPNRYYALLLAIFLLIYALYYIF 176 (217)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666777899999998888887777666665554
No 12
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=80 Score=25.37 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022861 38 FYSLCAAYALVSSVALIQLIRIE 60 (291)
Q Consensus 38 ~~~La~ly~ll~~~~~~QL~ri~ 60 (291)
+|-|+.+-..+++.+.+||.|+.
T Consensus 75 N~~LfsVN~f~~~tg~~QL~Ri~ 97 (118)
T KOG1589|consen 75 NYSLFSVNFFVAITGIYQLTRIA 97 (118)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999986
No 13
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.28 E-value=81 Score=21.22 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHhccc
Q 022861 189 GFLLYGGRLFFMLRRF 204 (291)
Q Consensus 189 ~F~~yG~kL~~~lr~~ 204 (291)
-|++.|..+|.+++..
T Consensus 17 If~~iGl~IyQkikqI 32 (49)
T PF11044_consen 17 IFAWIGLSIYQKIKQI 32 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3789999999888754
No 14
>PF04193 PQ-loop: PQ loop repeat
Probab=21.29 E-value=2.2e+02 Score=19.38 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCCcccchhHHHHHHHHHHHhhhheeeee
Q 022861 40 SLCAAYALVSSVALI-QLIRIELRVPEYGWTTQKVFHLMNFIVNGVRAVVFGF 91 (291)
Q Consensus 40 ~La~ly~ll~~~~~~-QL~ri~~r~~~~~~t~qkvf~lL~~l~~~~R~i~F~~ 91 (291)
+++.+-.++.+.+.+ |+++..++....|.+. .+.++....+..+.+|...
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~--~~~~l~~~g~~~~~~~~~~ 54 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSL--WFLLLWLIGSILWVLYSIL 54 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccH--HHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 8887765432234433 5666666777777766643
No 15
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=21.28 E-value=3.6e+02 Score=25.17 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=22.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 022861 30 SSQWQDGIFYSLCAAYALVSSVALIQLIRIELRVPEY 66 (291)
Q Consensus 30 ~~~~~~~l~~~La~ly~ll~~~~~~QL~ri~~r~~~~ 66 (291)
++.| +...++.+.+++..+.+.++.+ |+|+.
T Consensus 34 ~~~w---i~~ll~~~~~~~~~~~~~~l~~---~~p~~ 64 (359)
T TIGR00912 34 QDGW---ISIILGGLIIIFLLCLMIKIMS---KFPEK 64 (359)
T ss_pred CCee---HHHHHHHHHHHHHHHHHHHHHH---HCCCC
Confidence 3456 6678888888888888888876 45443
No 16
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=21.25 E-value=1.7e+02 Score=22.32 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022861 171 AEFIGKIFIAVVSFIAALGFLLYGGRLF 198 (291)
Q Consensus 171 ~~i~~~~~~a~isll~a~~F~~yG~kL~ 198 (291)
+++=+|.+.+.+.++.|+-+...|+|+-
T Consensus 32 v~Rd~D~~fs~vgLl~g~IL~~~gwRld 59 (84)
T PF07444_consen 32 VSRDYDIFFSSVGLLYGLILWFQGWRLD 59 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 6777788888888888888888888874
No 17
>PF03620 IBV_3C: IBV 3C protein; InterPro: IPR005296 These proteins are the product of ORF 3C from Infectious bronchitis virus. Currently, the function of this protein remains unknown.
Probab=20.81 E-value=1.3e+02 Score=22.95 Aligned_cols=31 Identities=35% Similarity=0.195 Sum_probs=22.8
Q ss_pred ccccccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022861 21 TSWWAEINESSQWQDGIFYSLCAAYALVSSVALIQLIRIE 60 (291)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~La~ly~ll~~~~~~QL~ri~ 60 (291)
-+.|-++|++ .|.++|.+++++|++-+.|.+
T Consensus 5 l~~sleeNG~---------Flt~lYv~~gfialYllgk~L 35 (93)
T PF03620_consen 5 LSKSLEENGS---------FLTALYVLLGFIALYLLGKAL 35 (93)
T ss_pred HHHHHHhcCc---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456667773 577889999999988888754
No 18
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=20.71 E-value=6.2e+02 Score=22.73 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=24.1
Q ss_pred ccccccC--CccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 022861 23 WWAEINE--SSQWQDGIFYSLCAAYALVSSVALIQLIR 58 (291)
Q Consensus 23 ~~~~~~~--~~~~~~~l~~~La~ly~ll~~~~~~QL~r 58 (291)
+|=|+|. |+-+.+-.+-.--..|.++|+.+..+..|
T Consensus 12 dwCE~nY~~s~yiAEf~NtlSNl~fi~~al~gl~~~~~ 49 (262)
T PF05875_consen 12 DWCEENYVVSPYIAEFWNTLSNLAFIVAALYGLYLARR 49 (262)
T ss_pred ccchhccccCcccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455553 56555666666677788888888777776
No 19
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=20.67 E-value=59 Score=29.85 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHhcccccc
Q 022861 186 AALGFLLYGGRLFFMLRRFPIE 207 (291)
Q Consensus 186 ~a~~F~~yG~kL~~~lr~~~~e 207 (291)
......++|.|.++++++....
T Consensus 208 s~~iii~cg~~~~~~i~~~~~~ 229 (307)
T PF10326_consen 208 SFFIIIYCGIKIYKKIKKLSSI 229 (307)
T ss_pred HHHHHHHHHhhhHHHHhccccc
Confidence 3344679999999999876554
Done!