Query 022861
Match_columns 291
No_of_seqs 122 out of 217
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z73_A Rhodopsin; visual pigme 47.3 1.6E+02 0.0055 26.5 16.5 22 33-54 29-50 (448)
2 2agh_C Zinc finger protein HRX 13.1 99 0.0034 17.8 1.6 26 264-289 5-31 (31)
3 3rlb_A THIT; S-component, ECF 12.8 2.8E+02 0.0095 23.1 5.1 64 224-287 123-192 (192)
4 2k4f_A T-cell surface glycopro 9.0 1.4E+02 0.0049 19.8 1.5 9 283-291 34-42 (57)
5 2l9u_A Receptor tyrosine-prote 8.0 4E+02 0.014 16.1 3.1 17 180-196 17-33 (40)
6 4eiy_A Adenosine receptor A2A/ 7.4 8.7E+02 0.03 21.1 6.8 42 11-54 6-47 (447)
7 4ea3_A Fusion protein of nocic 7.2 1.1E+03 0.039 20.5 14.2 21 34-54 121-141 (434)
8 1u19_A Rhodopsin; G protein-co 6.6 1E+03 0.036 19.6 14.6 18 37-54 37-54 (349)
9 1fdm_A FD coat protein, FD maj 5.5 4.9E+02 0.017 16.9 2.7 12 191-202 35-46 (50)
10 1ihs_I Hirutonin; hydrolase(se 5.3 2.7E+02 0.0092 15.4 1.2 13 279-291 3-16 (26)
No 1
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=47.29 E-value=1.6e+02 Score=26.48 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 022861 33 WQDGIFYSLCAAYALVSSVALI 54 (291)
Q Consensus 33 ~~~~l~~~La~ly~ll~~~~~~ 54 (291)
......+.+++++.+++++|++
T Consensus 29 ~~~~~~~~~~i~~~ii~i~gi~ 50 (448)
T 2z73_A 29 VPDAVYYSLGIFIGICGIIGCG 50 (448)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHh
Confidence 3455777888888888877765
No 2
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=13.09 E-value=99 Score=17.80 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=18.7
Q ss_pred HHhhHHhhHhhhccCCCCCC-CCCccc
Q 022861 264 EILPSALVLYILRKLPPKRI-SAQYHP 289 (291)
Q Consensus 264 EilPs~lvL~~~r~~p~~~~-~~~~~~ 289 (291)
.|+|+=.+=+.+++-|.-++ .+|-||
T Consensus 5 nilpsdimdfvlkntpsmqal~~~~e~ 31 (31)
T 2agh_C 5 NILPSDIMDFVLKNTPSMQALGESPES 31 (31)
T ss_dssp CSSCHHHHHHHHHHSCCCCCCCCCSCC
T ss_pred ccChHHHHHHHHhCChhHHHHhccCCC
Confidence 46888888888888887666 455543
No 3
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=12.76 E-value=2.8e+02 Score=23.05 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHH--hccCCCCCCccchhHHHH---HHHHHHHHhhHHhhHhhh-ccCCCCCCCCCc
Q 022861 224 ICFTCFLIRCFVVVLS--AFDKDASLDVMDHPVLNL---IYYMLVEILPSALVLYIL-RKLPPKRISAQY 287 (291)
Q Consensus 224 ic~~~F~~R~i~~l~~--~~~~~~~~~~~~~~~~~~---i~y~i~EilPs~lvL~~~-r~~p~~~~~~~~ 287 (291)
-+.+....|.+...++ .++.+.-.+..+.++.++ .-|.+.|.+=++.++..+ ++.|+--.+.+|
T Consensus 123 g~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~~l~~~ii~~iv~~lL~k~~~~~~~~~~~ 192 (192)
T 3rlb_A 123 GTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSNY 192 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC
Confidence 3444455565554443 223222122232333333 236777877777777555 445533334443
No 4
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=8.97 E-value=1.4e+02 Score=19.77 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=6.0
Q ss_pred CCCCcccCC
Q 022861 283 ISAQYHPIR 291 (291)
Q Consensus 283 ~~~~~~~~~ 291 (291)
.+..||||+
T Consensus 34 PNPDYEpIR 42 (57)
T 2k4f_A 34 PNPDYEPIR 42 (57)
T ss_dssp CSGGGCTTC
T ss_pred CCCCcchhh
Confidence 345688885
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.03 E-value=4e+02 Score=16.08 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022861 180 AVVSFIAALGFLLYGGR 196 (291)
Q Consensus 180 a~isll~a~~F~~yG~k 196 (291)
++++++.|..|+|.-+|
T Consensus 17 ~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEccc
Confidence 56778888888887544
No 6
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=7.43 E-value=8.7e+02 Score=21.06 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=11.8
Q ss_pred CCccccccccccccccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 022861 11 SSSSEFGTVLTSWWAEINESSQWQDGIFYSLCAAYALVSSVALI 54 (291)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~La~ly~ll~~~~~~ 54 (291)
.-|+.+..+..|++++.++.+. .....++.+++.+++++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~i~~~gi~ 47 (447)
T 4eiy_A 6 ALSYIFCLVFADYKDDDDGAPP--IMGSSVYITVELAIAVLAIL 47 (447)
T ss_dssp ------------------CCCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhccccCCcccCCCC--CCCcchHHHHHHHHHHHHHH
Confidence 4467777777787777665432 22334555566666655554
No 7
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=7.21 E-value=1.1e+03 Score=20.55 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 022861 34 QDGIFYSLCAAYALVSSVALI 54 (291)
Q Consensus 34 ~~~l~~~La~ly~ll~~~~~~ 54 (291)
......++++++.+++++|++
T Consensus 121 ~~~~~~~~~~~~~~i~~~gi~ 141 (434)
T 4ea3_A 121 PLGLKVTIVGLYLAVCVGGLL 141 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 345667777788888777765
No 8
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=6.64 E-value=1e+03 Score=19.56 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022861 37 IFYSLCAAYALVSSVALI 54 (291)
Q Consensus 37 l~~~La~ly~ll~~~~~~ 54 (291)
....+++++.++++.|+.
T Consensus 37 ~~~~~~~~~~~i~~~gi~ 54 (349)
T 1u19_A 37 QFSMLAAYMFLLIMLGFP 54 (349)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777777777755
No 9
>1fdm_A FD coat protein, FD major coat protein; membrane protein, micelles, viral protein; NMR {Enterobacteria phage FD} SCOP: h.1.4.1 PDB: 1ifd_A 1ifi_A 1ifj_A 1mzt_A 2hi5_A 2cpb_A 2cps_A
Probab=5.50 E-value=4.9e+02 Score=16.90 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=9.1
Q ss_pred HHHHHHHHhHhc
Q 022861 191 LLYGGRLFFMLR 202 (291)
Q Consensus 191 ~~yG~kL~~~lr 202 (291)
...|+||++|..
T Consensus 35 a~igIklfKKf~ 46 (50)
T 1fdm_A 35 ATIGIKLFKKFT 46 (50)
T ss_dssp HHHHHHHHHTTT
T ss_pred hhhhhhhhhhcc
Confidence 467999998754
No 10
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=5.35 E-value=2.7e+02 Score=15.40 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=7.3
Q ss_pred CCCCCCC-CcccCC
Q 022861 279 PPKRISA-QYHPIR 291 (291)
Q Consensus 279 p~~~~~~-~~~~~~ 291 (291)
||.+-.+ .++|||
T Consensus 3 pPqshn~gDFe~IP 16 (26)
T 1ihs_I 3 PXQSHNDGDFEEIP 16 (26)
T ss_pred CcccCCCCCCCcCC
Confidence 4444433 388876
Done!