Query 022861
Match_columns 291
No_of_seqs 122 out of 217
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 12:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022861.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022861hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 7.4 70 0.0051 23.0 1.2 22 34-55 97-118 (119)
2 d1u19a_ f.13.1.2 (A:) Rhodopsi 6.8 4.8E+02 0.035 19.7 16.5 18 37-54 36-53 (348)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.4 2.5E+02 0.018 14.8 2.9 17 37-53 17-33 (34)
4 d2ho2a1 b.72.1.1 (A:253-285) A 4.8 66 0.0048 17.8 -0.2 6 283-288 24-29 (33)
5 d2cupa3 g.39.1.3 (A:8-34) Four 4.6 1.5E+02 0.011 15.3 1.2 14 6-19 5-18 (27)
6 d1kf6c_ f.21.2.2 (C:) Fumarate 3.8 1.9E+02 0.014 20.8 1.7 9 21-29 13-21 (130)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 3.0 3.2E+02 0.023 17.8 2.1 11 269-279 34-44 (91)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 2.8 4E+02 0.029 14.0 1.9 10 122-131 18-27 (33)
9 d2cr8a1 g.41.11.1 (A:8-48) MDM 2.7 3.4E+02 0.025 15.4 1.6 28 4-31 12-39 (41)
10 d1e12a_ f.13.1.1 (A:) Halorhod 2.6 1.1E+03 0.077 17.7 7.6 24 105-128 208-231 (239)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=7.39 E-value=70 Score=23.00 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 022861 34 QDGIFYSLCAAYALVSSVALIQ 55 (291)
Q Consensus 34 ~~~l~~~La~ly~ll~~~~~~Q 55 (291)
..-++|.+|+++.++++++++|
T Consensus 97 g~~~fYg~A~l~sv~~~~~v~~ 118 (119)
T d1kf6d_ 97 GKWVFYGLAAILTVVTLIGVVT 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4458999999999999998765
No 2
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.82 E-value=4.8e+02 Score=19.69 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022861 37 IFYSLCAAYALVSSVALI 54 (291)
Q Consensus 37 l~~~La~ly~ll~~~~~~ 54 (291)
.+..+++++.+++++|+.
T Consensus 36 ~~~~~~~~~~ii~v~gi~ 53 (348)
T d1u19a_ 36 QFSMLAAYMFLLIMLGFP 53 (348)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356778888887777765
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.36 E-value=2.5e+02 Score=14.85 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022861 37 IFYSLCAAYALVSSVAL 53 (291)
Q Consensus 37 l~~~La~ly~ll~~~~~ 53 (291)
+.+.||.+|..++++++
T Consensus 17 lafslamlfvfialiay 33 (34)
T d1xmeb2 17 LAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45667777777777654
No 4
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.84 E-value=66 Score=17.75 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.5
Q ss_pred CCCCcc
Q 022861 283 ISAQYH 288 (291)
Q Consensus 283 ~~~~~~ 288 (291)
+.+|+|
T Consensus 24 GttQwe 29 (33)
T d2ho2a1 24 GTTQWE 29 (33)
T ss_dssp TEEESS
T ss_pred Cccccc
Confidence 344444
No 5
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.64 E-value=1.5e+02 Score=15.31 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=10.4
Q ss_pred CCCCCCCccccccc
Q 022861 6 GMPLNSSSSEFGTV 19 (291)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (291)
..|||.|+-|+--.
T Consensus 5 rkpigad~ke~h~k 18 (27)
T d2cupa3 5 RKPIGADSKEVHYK 18 (27)
T ss_dssp CCBCCSSSCEEEET
T ss_pred cCCcCcchHHhhcc
Confidence 46999998876544
No 6
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=1.9e+02 Score=20.80 Aligned_cols=9 Identities=22% Similarity=1.117 Sum_probs=6.6
Q ss_pred ccccccccC
Q 022861 21 TSWWAEINE 29 (291)
Q Consensus 21 ~~~~~~~~~ 29 (291)
.+||.+.+.
T Consensus 13 ~~WW~k~~F 21 (130)
T d1kf6c_ 13 STWWKKLPF 21 (130)
T ss_dssp TTGGGSSHH
T ss_pred chHhhcCcH
Confidence 569988764
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=3.2e+02 Score=17.77 Aligned_cols=11 Identities=9% Similarity=0.003 Sum_probs=4.9
Q ss_pred HhhHhhhccCC
Q 022861 269 ALVLYILRKLP 279 (291)
Q Consensus 269 ~lvL~~~r~~p 279 (291)
.+++|+.+|-+
T Consensus 34 ~~~~~~~~ryR 44 (91)
T d1fftb2 34 LMAVGFAWKYR 44 (91)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHhhheeee
Confidence 34445544433
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=2.78 E-value=4e+02 Score=14.03 Aligned_cols=10 Identities=30% Similarity=1.188 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q 022861 122 LVLFWAEIYH 131 (291)
Q Consensus 122 LvlfWa~i~~ 131 (291)
+++||-.++-
T Consensus 18 ilvfw~gv~a 27 (33)
T d1xmec1 18 ILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4568877763
No 9
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.71 E-value=3.4e+02 Score=15.44 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=19.3
Q ss_pred ccCCCCCCCccccccccccccccccCCc
Q 022861 4 ITGMPLNSSSSEFGTVLTSWWAEINESS 31 (291)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (291)
-.|+|+..-=.-=-.-|.||-.|....+
T Consensus 12 ~~N~Pl~ryC~rCWalRk~Wlpd~p~l~ 39 (41)
T d2cr8a1 12 KFNSPSKRYCFRCWALRKDWYSDCSKLT 39 (41)
T ss_dssp CEECSSCCBCTTTCCBCCCCCCCCCCCS
T ss_pred ccCCcchhHHHHHHHHHHhhcCCccccC
Confidence 3577777666666667888888877644
No 10
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=2.58 E-value=1.1e+03 Score=17.65 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 022861 105 LVVLDLPGLLFFSTYTLLVLFWAE 128 (291)
Q Consensus 105 ~iL~~lP~~lfFstf~LLvlfWa~ 128 (291)
.+.+.+-..+=-..|.++++.|+.
T Consensus 208 ~i~Y~ilDv~~K~~fgl~il~~a~ 231 (239)
T d1e12a_ 208 SWAYSVLDVFAKYVFAFILLRWVA 231 (239)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333333467777777753
Done!