Query 022862
Match_columns 291
No_of_seqs 179 out of 1459
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 8.8E-25 1.9E-29 172.4 8.1 99 42-142 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 1E-21 2.3E-26 154.9 7.9 92 152-243 1-106 (106)
3 PF01102 Glycophorin_A: Glycop 95.8 0.0027 5.9E-08 51.1 0.2 33 257-289 62-95 (122)
4 PF08693 SKG6: Transmembrane a 94.7 0.025 5.4E-07 36.4 2.0 8 262-269 15-22 (40)
5 PF02439 Adeno_E3_CR2: Adenovi 94.3 0.034 7.5E-07 35.2 2.0 23 260-282 4-26 (38)
6 PTZ00382 Variant-specific surf 91.8 0.12 2.5E-06 40.0 2.1 22 255-276 62-83 (96)
7 PF15102 TMEM154: TMEM154 prot 91.1 0.14 3E-06 42.4 2.0 15 261-275 58-72 (146)
8 PF14610 DUF4448: Protein of u 89.1 0.25 5.4E-06 42.7 2.0 29 258-286 156-184 (189)
9 PF11857 DUF3377: Domain of un 86.9 0.85 1.8E-05 33.3 3.3 28 256-283 26-53 (74)
10 PF01034 Syndecan: Syndecan do 86.7 0.2 4.3E-06 35.6 -0.0 21 261-281 11-31 (64)
11 PF01299 Lamp: Lysosome-associ 82.1 0.37 8E-06 44.9 -0.4 28 259-286 270-297 (306)
12 PF12669 P12: Virus attachment 80.7 2.7 5.9E-05 29.3 3.7 7 264-270 2-8 (58)
13 PF05568 ASFV_J13L: African sw 80.2 1 2.2E-05 37.3 1.5 30 260-289 30-59 (189)
14 PF08114 PMP1_2: ATPase proteo 77.7 4.5 9.8E-05 26.1 3.6 19 268-286 16-34 (43)
15 PF02009 Rifin_STEVOR: Rifin/s 76.9 0.84 1.8E-05 42.5 0.2 15 58-72 35-49 (299)
16 PHA03265 envelope glycoprotein 76.5 2.6 5.7E-05 39.8 3.3 27 262-288 350-377 (402)
17 PF04478 Mid2: Mid2 like cell 75.9 1.3 2.8E-05 37.0 1.0 21 261-281 51-71 (154)
18 PF08374 Protocadherin: Protoc 68.2 7.6 0.00016 34.3 4.0 25 261-286 40-64 (221)
19 PF05454 DAG1: Dystroglycan (D 65.9 2 4.3E-05 39.8 0.0 10 190-199 101-110 (290)
20 PRK01844 hypothetical protein; 65.0 2.9 6.4E-05 30.4 0.7 25 264-288 7-31 (72)
21 TIGR01477 RIFIN variant surfac 65.0 4.6 0.0001 38.3 2.2 13 277-289 328-340 (353)
22 PTZ00046 rifin; Provisional 64.8 4.6 0.0001 38.4 2.2 13 277-289 333-345 (358)
23 PTZ00370 STEVOR; Provisional 64.4 2.6 5.7E-05 38.8 0.5 13 57-69 56-68 (296)
24 PF15176 LRR19-TM: Leucine-ric 63.6 6.4 0.00014 30.5 2.4 24 258-281 13-36 (102)
25 PF05808 Podoplanin: Podoplani 61.6 2.7 5.7E-05 35.5 0.0 29 258-286 128-156 (162)
26 TIGR01478 STEVOR variant surfa 61.2 3.4 7.3E-05 38.0 0.6 14 57-70 57-70 (295)
27 PF15012 DUF4519: Domain of un 60.9 3.7 8E-05 28.4 0.6 23 259-281 28-50 (56)
28 PF15345 TMEM51: Transmembrane 60.9 17 0.00037 32.4 4.9 27 261-288 59-87 (233)
29 PRK00523 hypothetical protein; 58.0 4.6 0.0001 29.4 0.7 26 263-288 7-32 (72)
30 PF13908 Shisa: Wnt and FGF in 57.0 8.2 0.00018 32.8 2.3 13 261-273 77-89 (179)
31 PF07172 GRP: Glycine rich pro 57.0 5.5 0.00012 30.6 1.1 18 14-31 6-23 (95)
32 PF11884 DUF3404: Domain of un 49.6 6.7 0.00014 35.7 0.5 10 231-240 210-219 (262)
33 PF06697 DUF1191: Protein of u 49.0 17 0.00037 33.5 3.0 19 257-275 208-226 (278)
34 COG3763 Uncharacterized protei 48.8 8 0.00017 28.0 0.7 13 276-288 19-31 (71)
35 PF12877 DUF3827: Domain of un 47.4 19 0.0004 36.9 3.3 29 88-116 78-106 (684)
36 PLN03150 hypothetical protein; 47.2 19 0.00041 36.9 3.5 26 261-286 546-571 (623)
37 PF14914 LRRC37AB_C: LRRC37A/B 46.5 11 0.00023 31.4 1.2 30 260-289 121-150 (154)
38 PTZ00087 thrombosponding-relat 44.8 27 0.00058 32.0 3.6 24 256-279 293-316 (340)
39 KOG3637 Vitronectin receptor, 44.2 20 0.00044 39.1 3.2 26 259-284 976-1001(1030)
40 PTZ00382 Variant-specific surf 43.3 14 0.00031 28.3 1.5 25 261-285 65-89 (96)
41 PF05337 CSF-1: Macrophage col 41.7 8.6 0.00019 35.2 0.0 30 261-290 227-256 (285)
42 KOG3653 Transforming growth fa 41.4 35 0.00076 33.9 4.1 13 232-244 123-135 (534)
43 PF06024 DUF912: Nucleopolyhed 41.1 5.8 0.00013 30.8 -1.0 18 260-277 60-77 (101)
44 PTZ00045 apical membrane antig 40.5 26 0.00057 35.4 3.1 15 103-117 207-221 (595)
45 KOG1226 Integrin beta subunit 40.4 32 0.00069 35.9 3.7 29 257-285 709-737 (783)
46 PF12877 DUF3827: Domain of un 38.7 55 0.0012 33.7 5.0 21 192-212 212-232 (684)
47 PF12768 Rax2: Cortical protei 38.5 19 0.00042 33.2 1.7 19 258-276 226-244 (281)
48 PF12191 stn_TNFRSF12A: Tumour 36.5 11 0.00023 30.6 -0.3 11 280-290 98-108 (129)
49 PF03302 VSP: Giardia variant- 35.3 36 0.00077 33.0 3.1 17 257-273 365-381 (397)
50 PF01708 Gemini_mov: Geminivir 34.4 1.6E+02 0.0035 22.4 5.8 17 259-275 35-51 (91)
51 PF02480 Herpes_gE: Alphaherpe 32.7 15 0.00032 36.2 0.0 12 195-206 239-250 (439)
52 PF03229 Alpha_GJ: Alphavirus 32.0 67 0.0015 25.7 3.6 31 258-288 82-113 (126)
53 PF03672 UPF0154: Uncharacteri 31.7 61 0.0013 23.1 3.0 13 276-288 12-24 (64)
54 PF12301 CD99L2: CD99 antigen 31.6 46 0.00099 28.4 2.8 15 263-277 115-129 (169)
55 PF12768 Rax2: Cortical protei 31.0 80 0.0017 29.1 4.6 28 261-288 233-260 (281)
56 PF08374 Protocadherin: Protoc 29.6 36 0.00078 30.2 1.9 29 260-288 35-63 (221)
57 PF04689 S1FA: DNA binding pro 29.4 1.3E+02 0.0029 21.4 4.3 20 254-273 8-27 (69)
58 PF13908 Shisa: Wnt and FGF in 29.0 28 0.0006 29.6 1.1 21 257-277 77-97 (179)
59 PF10361 DUF2434: Protein of u 28.1 1.1E+02 0.0024 28.3 4.9 12 232-243 10-21 (296)
60 COG4736 CcoQ Cbb3-type cytochr 26.5 56 0.0012 23.0 2.0 22 268-289 15-36 (60)
61 KOG4818 Lysosomal-associated m 26.3 35 0.00075 32.5 1.3 23 261-283 328-350 (362)
62 PF10389 CoatB: Bacteriophage 25.8 1E+02 0.0022 20.5 3.1 20 269-288 25-44 (46)
63 PTZ00230 variable surface prot 25.8 1.3E+02 0.0027 29.0 5.0 43 235-277 265-309 (364)
64 smart00019 SF_P Pulmonary surf 24.7 72 0.0016 26.6 2.7 7 260-266 34-40 (191)
65 PHA03099 epidermal growth fact 23.5 40 0.00088 27.4 1.0 22 221-242 45-66 (139)
66 TIGR01478 STEVOR variant surfa 22.5 76 0.0016 29.4 2.7 14 16-29 2-15 (295)
67 PF05393 Hum_adeno_E3A: Human 22.2 98 0.0021 23.5 2.8 20 263-282 34-53 (94)
68 PF12606 RELT: Tumour necrosis 22.1 87 0.0019 21.2 2.3 19 262-280 3-21 (50)
69 PHA02844 putative transmembran 22.1 43 0.00094 24.5 0.8 9 279-287 65-73 (75)
70 PF02124 Marek_A: Marek's dise 21.4 1.7E+02 0.0037 25.9 4.6 21 256-276 179-199 (211)
71 PF13955 Fst_toxin: Toxin Fst, 21.3 43 0.00093 18.5 0.5 12 264-275 4-15 (21)
72 PTZ00370 STEVOR; Provisional 21.2 84 0.0018 29.1 2.7 11 277-287 273-283 (296)
73 PF10873 DUF2668: Protein of u 20.9 1.5E+02 0.0032 24.7 3.8 16 258-273 60-75 (155)
74 PHA03286 envelope glycoprotein 20.6 61 0.0013 31.9 1.7 13 277-289 409-421 (492)
75 PF15099 PIRT: Phosphoinositid 20.5 60 0.0013 26.3 1.4 15 225-241 44-58 (129)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.91 E-value=8.8e-25 Score=172.45 Aligned_cols=99 Identities=42% Similarity=0.784 Sum_probs=76.6
Q ss_pred ccCCC---CCCC-CCCchHHHHHHHHHHHHHhhhccC---CceeEEEeCCCCCccEEEEEecCCCCChhchHHHHHHHHH
Q 022862 42 FGGCA---QQKY-TPSSAYESNLNSLLTSLVNSATYS---SYNNFTIMGSSPQDVVYGLYQCRGDLSMPDCATCVARAVT 114 (291)
Q Consensus 42 ~~~C~---~~~~-t~~s~f~~nl~~ll~~L~~~a~~~---~f~~~~~~~g~~~~~vYglaqCr~Dls~~~C~~Cl~~a~~ 114 (291)
|+.|+ .+++ +++++|++|++.||..|..+++.. +|++++. |.+++++|||+||++|+++++|..||+.++.
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~--~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~ 78 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSA--GSGPDTVYGLAQCRGDLSPSDCRACLADAVA 78 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE----ST---EEEEEEE-TTS-HHHHHHHHHHHHC
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeec--CCCCCeEEEEEEcCCCCChhhhHHHHHHHHH
Confidence 67898 3566 567889999999999999998763 7888875 6788999999999999999999999999999
Q ss_pred hhcccccCCceEEEEcCceeeeeeccee
Q 022862 115 QVGGLCYQDCGGALQLQGCYVKYDNATF 142 (291)
Q Consensus 115 ~~~~~C~~~~~a~i~~d~C~lRYs~~~F 142 (291)
.+++.|+.+++|+||+++|+||||+++|
T Consensus 79 ~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 79 NISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp CHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 9999999999999999999999999988
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.86 E-value=1e-21 Score=154.87 Aligned_cols=92 Identities=28% Similarity=0.576 Sum_probs=68.5
Q ss_pred eeccC-C--CCC--CchhHhHHHHHHHHHHHhc---C--CCceec----CCCcEEEEEEccCCCChhhHHHHHHHHHHHh
Q 022862 152 FKKCG-P--SVG--YEPDAMGRRDAVLQGLMTA---S--GPYRVG----GARDVQGLAQCVGDLSAGECQDCLVQAIGRL 217 (291)
Q Consensus 152 ~~~c~-~--~~~--~~~~f~~~l~~ll~~l~~~---~--~~f~~~----~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i 217 (291)
|+.|+ + .+. .++.|+.+++++|..|... . .+|+.+ +.++||||+||++||++++|..||+.++.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 45677 2 222 2456999999999999743 2 367764 4568999999999999999999999999999
Q ss_pred hhcCCCCcccEEEecceeEEeecCCC
Q 022862 218 KSDCGTADYGDMFLGKCYVRYSTGKA 243 (291)
Q Consensus 218 ~~~C~~~~gg~v~~~~C~lRYe~~~F 243 (291)
+++|++++||+|++++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 3
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.78 E-value=0.0027 Score=51.12 Aligned_cols=33 Identities=27% Similarity=0.535 Sum_probs=21.2
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHHH-HHHhhcc
Q 022862 257 EGEKTFAIIVGLLAGVALIIIFLTFI-RKVFGEH 289 (291)
Q Consensus 257 ~~~~~~~ivv~vv~~~~~~~~~~~~~-~~~~~~~ 289 (291)
+...++.||+||++++++++++++|+ ||++||.
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34558889999999988777655554 5555553
No 4
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.66 E-value=0.025 Score=36.41 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.5
Q ss_pred EEEeeHHH
Q 022862 262 FAIIVGLL 269 (291)
Q Consensus 262 ~~ivv~vv 269 (291)
+++++|++
T Consensus 15 ~~VvVPV~ 22 (40)
T PF08693_consen 15 VGVVVPVG 22 (40)
T ss_pred EEEEechH
Confidence 33345544
No 5
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=94.28 E-value=0.034 Score=35.18 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=17.9
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFI 282 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~ 282 (291)
.+++||++|+++++++++++.++
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFYY 26 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 46889999999988887766543
No 6
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=91.85 E-value=0.12 Score=40.01 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=14.5
Q ss_pred CCCCCcEEEEeeHHHHHHHHHH
Q 022862 255 SNEGEKTFAIIVGLLAGVALII 276 (291)
Q Consensus 255 ~~~~~~~~~ivv~vv~~~~~~~ 276 (291)
+.+.+.+..|+|++++.+.+|+
T Consensus 62 ~ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 62 GLSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred CcccccEEEEEeehhhHHHHHH
Confidence 3445668888888776655444
No 7
>PF15102 TMEM154: TMEM154 protein family
Probab=91.14 E-value=0.14 Score=42.41 Aligned_cols=15 Identities=27% Similarity=0.405 Sum_probs=9.5
Q ss_pred EEEEeeHHHHHHHHH
Q 022862 261 TFAIIVGLLAGVALI 275 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~ 275 (291)
++.|+||.|+.++++
T Consensus 58 iLmIlIP~VLLvlLL 72 (146)
T PF15102_consen 58 ILMILIPLVLLVLLL 72 (146)
T ss_pred EEEEeHHHHHHHHHH
Confidence 788888855444433
No 8
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=89.07 E-value=0.25 Score=42.71 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=19.7
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHHHHHHHh
Q 022862 258 GEKTFAIIVGLLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~~~~~~~~~~~~~~ 286 (291)
+...++|+||+++++++++++++++|+|+
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~ 184 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRK 184 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeecc
Confidence 34489999999987776665555555433
No 9
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=86.90 E-value=0.85 Score=33.33 Aligned_cols=28 Identities=7% Similarity=0.326 Sum_probs=20.9
Q ss_pred CCCCcEEEEeeHHHHHHHHHHHHHHHHH
Q 022862 256 NEGEKTFAIIVGLLAGVALIIIFLTFIR 283 (291)
Q Consensus 256 ~~~~~~~~ivv~vv~~~~~~~~~~~~~~ 283 (291)
.+..+.++||||.+.+++++++++.++.
T Consensus 26 ~~~~~avaVviPl~L~LCiLvl~yai~~ 53 (74)
T PF11857_consen 26 GGTVNAVAVVIPLVLLLCILVLIYAIFQ 53 (74)
T ss_pred CCceeEEEEeHHHHHHHHHHHHHHHhhe
Confidence 3445689999999988888877666553
No 10
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=86.69 E-value=0.2 Score=35.58 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred EEEEeeHHHHHHHHHHHHHHH
Q 022862 261 TFAIIVGLLAGVALIIIFLTF 281 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~ 281 (291)
..++|.|+|+++++.++.+.|
T Consensus 11 laavIaG~Vvgll~ailLIlf 31 (64)
T PF01034_consen 11 LAAVIAGGVVGLLFAILLILF 31 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555443333
No 11
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=82.08 E-value=0.37 Score=44.87 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=16.1
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHHHh
Q 022862 259 EKTFAIIVGLLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 259 ~~~~~ivv~vv~~~~~~~~~~~~~~~~~ 286 (291)
..++.|+||++++++++|++++|+..||
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rr 297 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRR 297 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEec
Confidence 4567777777666555555455443333
No 12
>PF12669 P12: Virus attachment protein p12 family
Probab=80.65 E-value=2.7 Score=29.28 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=3.1
Q ss_pred EeeHHHH
Q 022862 264 IIVGLLA 270 (291)
Q Consensus 264 ivv~vv~ 270 (291)
|||++++
T Consensus 2 iII~~Ii 8 (58)
T PF12669_consen 2 IIIGIII 8 (58)
T ss_pred eeHHHHH
Confidence 4444443
No 13
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=80.16 E-value=1 Score=37.30 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=19.0
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHHHhhcc
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRKVFGEH 289 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~~~~~~ 289 (291)
....|+++|++.++++++.++|.-+|+||+
T Consensus 30 hm~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 30 HMYTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 345577788777776666666665555553
No 14
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=77.67 E-value=4.5 Score=26.06 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022862 268 LLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 268 vv~~~~~~~~~~~~~~~~~ 286 (291)
+|..+++.+++.+.+|||.
T Consensus 16 lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 16 LVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444456666677765
No 15
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=76.92 E-value=0.84 Score=42.47 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhc
Q 022862 58 SNLNSLLTSLVNSAT 72 (291)
Q Consensus 58 ~nl~~ll~~L~~~a~ 72 (291)
+-+.++++....+++
T Consensus 35 PeMK~Vme~F~rqTs 49 (299)
T PF02009_consen 35 PEMKSVMENFDRQTS 49 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777776654
No 16
>PHA03265 envelope glycoprotein D; Provisional
Probab=76.45 E-value=2.6 Score=39.77 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=14.3
Q ss_pred EEEeeHH-HHHHHHHHHHHHHHHHHhhc
Q 022862 262 FAIIVGL-LAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 262 ~~ivv~v-v~~~~~~~~~~~~~~~~~~~ 288 (291)
+.|+||. |++++++-+++++.|||+|.
T Consensus 350 ~g~~ig~~i~glv~vg~il~~~~rr~k~ 377 (402)
T PHA03265 350 VGISVGLGIAGLVLVGVILYVCLRRKKE 377 (402)
T ss_pred cceEEccchhhhhhhhHHHHHHhhhhhh
Confidence 3333333 44555555566666776643
No 17
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=75.92 E-value=1.3 Score=37.00 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=11.8
Q ss_pred EEEEeeHHHHHHHHHHHHHHH
Q 022862 261 TFAIIVGLLAGVALIIIFLTF 281 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~ 281 (291)
+|.+||||-++++++++++.|
T Consensus 51 VIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 51 VIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred EEEEEecccHHHHHHHHHhhe
Confidence 566677775555544444433
No 18
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=68.21 E-value=7.6 Score=34.30 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=10.6
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHh
Q 022862 261 TFAIIVGLLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~~~~~~ 286 (291)
+++||-|+++ |+|+|++.+++|++|
T Consensus 40 ~iaiVAG~~t-VILVI~i~v~vR~CR 64 (221)
T PF08374_consen 40 MIAIVAGIMT-VILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeecchhh-hHHHHHHHHHHHHHh
Confidence 3444444443 333344444444333
No 19
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=65.94 E-value=2 Score=39.83 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=0.0
Q ss_pred cEEEEEEccC
Q 022862 190 DVQGLAQCVG 199 (291)
Q Consensus 190 ~vYglaQC~~ 199 (291)
++.++++|..
T Consensus 101 sv~~~G~C~~ 110 (290)
T PF05454_consen 101 SVIPIGSCQD 110 (290)
T ss_dssp ----------
T ss_pred EEEEeeccCC
Confidence 5777888874
No 20
>PRK01844 hypothetical protein; Provisional
Probab=65.00 E-value=2.9 Score=30.40 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=14.5
Q ss_pred EeeHHHHHHHHHHHHHHHHHHHhhc
Q 022862 264 IIVGLLAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 264 ivv~vv~~~~~~~~~~~~~~~~~~~ 288 (291)
|+++|++.++-+++++++.||..+|
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566666776654
No 21
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=64.96 E-value=4.6 Score=38.31 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhcc
Q 022862 277 IFLTFIRKVFGEH 289 (291)
Q Consensus 277 ~~~~~~~~~~~~~ 289 (291)
+++.++|.||||+
T Consensus 328 IIYLILRYRRKKK 340 (353)
T TIGR01477 328 IIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHhhhcch
Confidence 3444556655554
No 22
>PTZ00046 rifin; Provisional
Probab=64.85 E-value=4.6 Score=38.41 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhcc
Q 022862 277 IFLTFIRKVFGEH 289 (291)
Q Consensus 277 ~~~~~~~~~~~~~ 289 (291)
+++.++|.||||+
T Consensus 333 IIYLILRYRRKKK 345 (358)
T PTZ00046 333 IIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHhhhcch
Confidence 3444556655554
No 23
>PTZ00370 STEVOR; Provisional
Probab=64.41 E-value=2.6 Score=38.75 Aligned_cols=13 Identities=8% Similarity=0.417 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHh
Q 022862 57 ESNLNSLLTSLVN 69 (291)
Q Consensus 57 ~~nl~~ll~~L~~ 69 (291)
++-+.++++.+..
T Consensus 56 DpemK~i~d~~n~ 68 (296)
T PTZ00370 56 DPELKEIIDKMNE 68 (296)
T ss_pred cHHHHHHHHHHhH
Confidence 4678888888876
No 24
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=63.55 E-value=6.4 Score=30.51 Aligned_cols=24 Identities=13% Similarity=0.540 Sum_probs=17.5
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHHH
Q 022862 258 GEKTFAIIVGLLAGVALIIIFLTF 281 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~~~~~~~~~ 281 (291)
+++.|...||||++++++.+.+++
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIal 36 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIAL 36 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHH
Confidence 477888999998887766555544
No 25
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=61.58 E-value=2.7 Score=35.46 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHHHHHHHh
Q 022862 258 GEKTFAIIVGLLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~~~~~~~~~~~~~~ 286 (291)
....+-|||||++++.++.-++.++.|+|
T Consensus 128 T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 128 TVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp -----------------------------
T ss_pred eeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 44478889999988887764444444444
No 26
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=61.19 E-value=3.4 Score=37.98 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhh
Q 022862 57 ESNLNSLLTSLVNS 70 (291)
Q Consensus 57 ~~nl~~ll~~L~~~ 70 (291)
++-+.++++.+...
T Consensus 57 DpEmK~iid~~n~e 70 (295)
T TIGR01478 57 DPELKEIIDKLNEE 70 (295)
T ss_pred cHHHHHHHHHHhHH
Confidence 46678888887763
No 27
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=60.90 E-value=3.7 Score=28.36 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=16.6
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHH
Q 022862 259 EKTFAIIVGLLAGVALIIIFLTF 281 (291)
Q Consensus 259 ~~~~~ivv~vv~~~~~~~~~~~~ 281 (291)
.++.-||+|++++++++|+.+.|
T Consensus 28 ~kv~tVVlP~l~~~~~~Ivv~vy 50 (56)
T PF15012_consen 28 QKVFTVVLPTLAAVFLFIVVFVY 50 (56)
T ss_pred HhheeEehhHHHHHHHHHhheeE
Confidence 45778999999877776665544
No 28
>PF15345 TMEM51: Transmembrane protein 51
Probab=60.86 E-value=17 Score=32.44 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=13.0
Q ss_pred EEEEeeHHHHHHHHHH--HHHHHHHHHhhc
Q 022862 261 TFAIIVGLLAGVALII--IFLTFIRKVFGE 288 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~--~~~~~~~~~~~~ 288 (291)
.+|.|+-.+ ++++|+ +|+.+..|||++
T Consensus 59 SVAyVLVG~-Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 59 SVAYVLVGS-GVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEEEehhhH-HHHHHHHHHHHHHHHHHHHh
Confidence 455553333 333333 566655554443
No 29
>PRK00523 hypothetical protein; Provisional
Probab=58.04 E-value=4.6 Score=29.39 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=14.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHHHHhhc
Q 022862 263 AIIVGLLAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 263 ~ivv~vv~~~~~~~~~~~~~~~~~~~ 288 (291)
+|+++|++.++-++.++++.||..+|
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455554444445566666766654
No 30
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=57.03 E-value=8.2 Score=32.85 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=6.4
Q ss_pred EEEEeeHHHHHHH
Q 022862 261 TFAIIVGLLAGVA 273 (291)
Q Consensus 261 ~~~ivv~vv~~~~ 273 (291)
+..|||+|+++|+
T Consensus 77 ~~~iivgvi~~Vi 89 (179)
T PF13908_consen 77 ITGIIVGVICGVI 89 (179)
T ss_pred eeeeeeehhhHHH
Confidence 4445555544433
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.00 E-value=5.5 Score=30.64 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhcCCC
Q 022862 14 LLLLFSFIIVFLSIPSFS 31 (291)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (291)
++||.|||.++++|++-+
T Consensus 6 ~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 566666666666666555
No 32
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=49.57 E-value=6.7 Score=35.75 Aligned_cols=10 Identities=40% Similarity=0.982 Sum_probs=8.2
Q ss_pred ecceeEEeec
Q 022862 231 LGKCYVRYST 240 (291)
Q Consensus 231 ~~~C~lRYe~ 240 (291)
+.+|++||.+
T Consensus 210 ~~sC~~r~gN 219 (262)
T PF11884_consen 210 GNSCFVRYGN 219 (262)
T ss_pred CCcccceecc
Confidence 4689999985
No 33
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=49.04 E-value=17 Score=33.49 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=10.6
Q ss_pred CCCcEEEEeeHHHHHHHHH
Q 022862 257 EGEKTFAIIVGLLAGVALI 275 (291)
Q Consensus 257 ~~~~~~~ivv~vv~~~~~~ 275 (291)
+..+.|.||++++++++++
T Consensus 208 ~~~~~W~iv~g~~~G~~~L 226 (278)
T PF06697_consen 208 KRSWWWKIVVGVVGGVVLL 226 (278)
T ss_pred CcceeEEEEEEehHHHHHH
Confidence 3444666776655554444
No 34
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.82 E-value=8 Score=27.97 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhc
Q 022862 276 IIFLTFIRKVFGE 288 (291)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (291)
+.++++.||..+|
T Consensus 19 ~~G~fiark~~~k 31 (71)
T COG3763 19 IGGFFIARKQMKK 31 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3455556776654
No 35
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=47.40 E-value=19 Score=36.90 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=21.9
Q ss_pred ccEEEEEecCCCCChhchHHHHHHHHHhh
Q 022862 88 DVVYGLYQCRGDLSMPDCATCVARAVTQV 116 (291)
Q Consensus 88 ~~vYglaqCr~Dls~~~C~~Cl~~a~~~~ 116 (291)
+-+|+..-=++-|+.++=..=|.....+.
T Consensus 78 ~i~~aVr~~~~~LnGt~~S~lL~~Ls~~~ 106 (684)
T PF12877_consen 78 SITYAVRNGSGFLNGTEVSELLRQLSAVE 106 (684)
T ss_pred EEEEEEecCceeeccHHHHHHHHhhhhhh
Confidence 57899998889999888766666665443
No 36
>PLN03150 hypothetical protein; Provisional
Probab=47.17 E-value=19 Score=36.91 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=14.8
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHh
Q 022862 261 TFAIIVGLLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~~~~~~ 286 (291)
++.|++++++++++++++..++||++
T Consensus 546 ~i~~~~~~~~~~l~~~~~~~~~~~~r 571 (623)
T PLN03150 546 KIGIAFGVSVAFLFLVICAMCWWKRR 571 (623)
T ss_pred EEEEEhHHHHHHHHHHHHHhhheeeh
Confidence 56667777665555555444555544
No 37
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=46.53 E-value=11 Score=31.40 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=16.0
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHHHhhcc
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRKVFGEH 289 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~~~~~~ 289 (291)
.+++|.|.+++-++++++|+..+...|+..
T Consensus 121 lilaisvtvv~~iliii~CLiei~shr~a~ 150 (154)
T PF14914_consen 121 LILAISVTVVVMILIIIFCLIEICSHRRAS 150 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 355555555544445555665555555443
No 38
>PTZ00087 thrombosponding-related protein; Provisional
Probab=44.85 E-value=27 Score=32.04 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=16.4
Q ss_pred CCCCcEEEEeeHHHHHHHHHHHHH
Q 022862 256 NEGEKTFAIIVGLLAGVALIIIFL 279 (291)
Q Consensus 256 ~~~~~~~~ivv~vv~~~~~~~~~~ 279 (291)
++.-++++|++|||..+.++.+.+
T Consensus 293 sst~~i~~i~~piv~vi~v~~ily 316 (340)
T PTZ00087 293 SSTFKILIILLPIVLIICVMGILY 316 (340)
T ss_pred CCcceEeeeehhHHHHHHHHHHHH
Confidence 344568888899987766665544
No 39
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=44.19 E-value=20 Score=39.06 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=19.6
Q ss_pred CcEEEEeeHHHHHHHHHHHHHHHHHH
Q 022862 259 EKTFAIIVGLLAGVALIIIFLTFIRK 284 (291)
Q Consensus 259 ~~~~~ivv~vv~~~~~~~~~~~~~~~ 284 (291)
-.+|+||+++++++++|+++++.+||
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHh
Confidence 34899999999998888765555544
No 40
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=43.28 E-value=14 Score=28.33 Aligned_cols=25 Identities=28% Similarity=-0.000 Sum_probs=10.6
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHH
Q 022862 261 TFAIIVGLLAGVALIIIFLTFIRKV 285 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~~~~~ 285 (291)
.-+|+-.+|++++++.+++.|++|+
T Consensus 65 ~gaiagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 65 TGAIAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred cccEEEEEeehhhHHHHHHHHHhhe
Confidence 3344333333343334555555443
No 41
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=41.69 E-value=8.6 Score=35.22 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHhhccC
Q 022862 261 TFAIIVGLLAGVALIIIFLTFIRKVFGEHG 290 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~~~~~~~~~~ 290 (291)
+.-+.|+.|+.|++.+-++.||||++|.|.
T Consensus 227 vf~lLVPSiILVLLaVGGLLfYr~rrRs~~ 256 (285)
T PF05337_consen 227 VFYLLVPSIILVLLAVGGLLFYRRRRRSHR 256 (285)
T ss_dssp ------------------------------
T ss_pred cccccccchhhhhhhccceeeecccccccc
Confidence 344455555555555567788888777663
No 42
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=41.39 E-value=35 Score=33.89 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=8.2
Q ss_pred cceeEEeecCCCC
Q 022862 232 GKCYVRYSTGKAP 244 (291)
Q Consensus 232 ~~C~lRYe~~~F~ 244 (291)
+-|+..|+..+-+
T Consensus 123 ~~CN~n~s~~~~~ 135 (534)
T KOG3653|consen 123 DFCNANFSHLPPP 135 (534)
T ss_pred CcccCCccccCCC
Confidence 4688877755444
No 43
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=41.12 E-value=5.8 Score=30.76 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=9.3
Q ss_pred cEEEEeeHHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALIII 277 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~ 277 (291)
...+|++++++.++++++
T Consensus 60 ~~~iili~lls~v~IlVi 77 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVI 77 (101)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 345555666555554443
No 44
>PTZ00045 apical membrane antigen 1; Provisional
Probab=40.49 E-value=26 Score=35.37 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.5
Q ss_pred hchHHHHHHHHHhhc
Q 022862 103 PDCATCVARAVTQVG 117 (291)
Q Consensus 103 ~~C~~Cl~~a~~~~~ 117 (291)
.++..|-..|...++
T Consensus 207 ~dla~Ca~~a~~~vp 221 (595)
T PTZ00045 207 NDLALCAEYASNFVP 221 (595)
T ss_pred hhHHHHHHHHHhcCc
Confidence 678889888888877
No 45
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=40.39 E-value=32 Score=35.92 Aligned_cols=29 Identities=38% Similarity=0.662 Sum_probs=21.9
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHHHHHH
Q 022862 257 EGEKTFAIIVGLLAGVALIIIFLTFIRKV 285 (291)
Q Consensus 257 ~~~~~~~ivv~vv~~~~~~~~~~~~~~~~ 285 (291)
....+++|+++++++++++.+++..+||.
T Consensus 709 ~~~~~~~i~lgvv~~ivligl~llliwkl 737 (783)
T KOG1226|consen 709 PGPNILAIVLGVVAGIVLIGLALLLIWKL 737 (783)
T ss_pred CCCcEeeehHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999998888776666666664
No 46
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=38.72 E-value=55 Score=33.66 Aligned_cols=21 Identities=19% Similarity=-0.160 Sum_probs=11.0
Q ss_pred EEEEEccCCCChhhHHHHHHH
Q 022862 192 QGLAQCVGDLSAGECQDCLVQ 212 (291)
Q Consensus 192 YglaQC~~DLs~~dC~~CL~~ 212 (291)
|...+=-.-|...++..=|..
T Consensus 212 yV~~~~G~pl~a~~AA~~Ln~ 232 (684)
T PF12877_consen 212 YVEGQNGKPLPAVTAAKDLNL 232 (684)
T ss_pred EEEcCCCcCCcHHHHHHHHhc
Confidence 333344455666666655543
No 47
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.47 E-value=19 Score=33.19 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=11.1
Q ss_pred CCcEEEEeeHHHHHHHHHH
Q 022862 258 GEKTFAIIVGLLAGVALII 276 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~~~~ 276 (291)
.+.++.|-+++.+++++++
T Consensus 226 ~G~VVlIslAiALG~v~ll 244 (281)
T PF12768_consen 226 RGFVVLISLAIALGTVFLL 244 (281)
T ss_pred ceEEEEEehHHHHHHHHHH
Confidence 4456666666666655444
No 48
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=36.52 E-value=11 Score=30.59 Aligned_cols=11 Identities=0% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHhhccC
Q 022862 280 TFIRKVFGEHG 290 (291)
Q Consensus 280 ~~~~~~~~~~~ 290 (291)
+++||++|+.+
T Consensus 98 ~lv~rrcrrr~ 108 (129)
T PF12191_consen 98 FLVWRRCRRRE 108 (129)
T ss_dssp -----------
T ss_pred HHHHhhhhccc
Confidence 33444444443
No 49
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=35.30 E-value=36 Score=32.98 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=10.1
Q ss_pred CCCcEEEEeeHHHHHHH
Q 022862 257 EGEKTFAIIVGLLAGVA 273 (291)
Q Consensus 257 ~~~~~~~ivv~vv~~~~ 273 (291)
+.+.|.-|.|++|++|.
T Consensus 365 stgaIaGIsvavvvvVg 381 (397)
T PF03302_consen 365 STGAIAGISVAVVVVVG 381 (397)
T ss_pred cccceeeeeehhHHHHH
Confidence 34457777777665444
No 50
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=34.39 E-value=1.6e+02 Score=22.39 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=8.6
Q ss_pred CcEEEEeeHHHHHHHHH
Q 022862 259 EKTFAIIVGLLAGVALI 275 (291)
Q Consensus 259 ~~~~~ivv~vv~~~~~~ 275 (291)
++++.|++.++++++++
T Consensus 35 s~vv~v~i~~lvaVg~~ 51 (91)
T PF01708_consen 35 SRVVEVAIFTLVAVGCL 51 (91)
T ss_pred eeEeeeeehHHHHHHHH
Confidence 34555555555555444
No 51
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=32.75 E-value=15 Score=36.19 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=8.5
Q ss_pred EEccCCCChhhH
Q 022862 195 AQCVGDLSAGEC 206 (291)
Q Consensus 195 aQC~~DLs~~dC 206 (291)
..|.++-.+.+|
T Consensus 239 ~~C~~~~~~~~C 250 (439)
T PF02480_consen 239 ANCSPSGWPRRC 250 (439)
T ss_dssp EEEBTTC-TTTT
T ss_pred cCCCCCCCcCCC
Confidence 569998777777
No 52
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=31.99 E-value=67 Score=25.65 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCcEEEEeeHHHHHHHHHHHHHH-HHHHHhhc
Q 022862 258 GEKTFAIIVGLLAGVALIIIFLT-FIRKVFGE 288 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~~~~~~~~-~~~~~~~~ 288 (291)
...++-.|||-+.++++.+++.. +++|++|+
T Consensus 82 ~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 82 VDFALPLVIGGLCALTLAAMGAGALLRRCCRR 113 (126)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555665555555555443 44555544
No 53
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=31.73 E-value=61 Score=23.11 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhc
Q 022862 276 IIFLTFIRKVFGE 288 (291)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (291)
++++++.||..+|
T Consensus 12 ~~Gff~ar~~~~k 24 (64)
T PF03672_consen 12 VIGFFIARKYMEK 24 (64)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555665544
No 54
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=31.58 E-value=46 Score=28.41 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=7.3
Q ss_pred EEeeHHHHHHHHHHH
Q 022862 263 AIIVGLLAGVALIII 277 (291)
Q Consensus 263 ~ivv~vv~~~~~~~~ 277 (291)
-+|.|||.+|++.++
T Consensus 115 g~IaGIvsav~valv 129 (169)
T PF12301_consen 115 GTIAGIVSAVVVALV 129 (169)
T ss_pred chhhhHHHHHHHHHH
Confidence 345555555444443
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.05 E-value=80 Score=29.10 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=15.1
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHHHHhhc
Q 022862 261 TFAIIVGLLAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~~~~~~~~ 288 (291)
-++|.+|++..++++-+++.+++|++.+
T Consensus 233 slAiALG~v~ll~l~Gii~~~~~r~~~~ 260 (281)
T PF12768_consen 233 SLAIALGTVFLLVLIGIILAYIRRRRQG 260 (281)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3556666665555555555555555433
No 56
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.64 E-value=36 Score=30.16 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=21.9
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHHHhhc
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~~~~~ 288 (291)
-.+.|+++||++++.+|++++...-.|+-
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR~C 63 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVRYC 63 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHHHH
Confidence 36888999998888888877776665543
No 57
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.44 E-value=1.3e+02 Score=21.36 Aligned_cols=20 Identities=15% Similarity=-0.046 Sum_probs=10.3
Q ss_pred CCCCCCcEEEEeeHHHHHHH
Q 022862 254 SSNEGEKTFAIIVGLLAGVA 273 (291)
Q Consensus 254 ~~~~~~~~~~ivv~vv~~~~ 273 (291)
+|-+-+.++.|+|+-++.++
T Consensus 8 KGlnPGlIVLlvV~g~ll~f 27 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVF 27 (69)
T ss_pred cCCCCCeEEeehHHHHHHHH
Confidence 34444556666665544333
No 58
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.02 E-value=28 Score=29.57 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=12.1
Q ss_pred CCCcEEEEeeHHHHHHHHHHH
Q 022862 257 EGEKTFAIIVGLLAGVALIII 277 (291)
Q Consensus 257 ~~~~~~~ivv~vv~~~~~~~~ 277 (291)
....++.||++||+.++++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVC 97 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhh
Confidence 455667777766655444433
No 59
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=28.14 E-value=1.1e+02 Score=28.31 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=9.4
Q ss_pred cceeEEeecCCC
Q 022862 232 GKCYVRYSTGKA 243 (291)
Q Consensus 232 ~~C~lRYe~~~F 243 (291)
..|+|-++.|..
T Consensus 10 s~C~L~f~~y~P 21 (296)
T PF10361_consen 10 SNCYLTFDPYTP 21 (296)
T ss_pred CeEEEEcCCcCc
Confidence 579999998743
No 60
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.47 E-value=56 Score=22.98 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 022862 268 LLAGVALIIIFLTFIRKVFGEH 289 (291)
Q Consensus 268 vv~~~~~~~~~~~~~~~~~~~~ 289 (291)
+++-.++++.+++|..|..|||
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchh
Confidence 3333333333444444444444
No 61
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=26.34 E-value=35 Score=32.49 Aligned_cols=23 Identities=13% Similarity=0.488 Sum_probs=11.8
Q ss_pred EEEEeeHHHHHHHHHHHHHHHHH
Q 022862 261 TFAIIVGLLAGVALIIIFLTFIR 283 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~~~~~~~~~ 283 (291)
.+-||||.+++.+++++.+.++.
T Consensus 328 v~PivVg~~l~gl~~~vliaylI 350 (362)
T KOG4818|consen 328 VLPIAVGAILAGLVLVVLIAYLI 350 (362)
T ss_pred ecchHHHHHHHHHHHHHHHHhhe
Confidence 45556666555444444445444
No 62
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=25.81 E-value=1e+02 Score=20.46 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 022862 269 LAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 269 v~~~~~~~~~~~~~~~~~~~ 288 (291)
++++++.++.....+|+.||
T Consensus 25 ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444333333334444444
No 63
>PTZ00230 variable surface protein Vir7; Provisional
Probab=25.79 E-value=1.3e+02 Score=28.97 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=22.5
Q ss_pred eEEeecCCCCCC--CCCCCCCCCCCCCcEEEEeeHHHHHHHHHHH
Q 022862 235 YVRYSTGKAPNS--YKDHNDKSSNEGEKTFAIIVGLLAGVALIII 277 (291)
Q Consensus 235 ~lRYe~~~F~~~--~~p~~~~~~~~~~~~~~ivv~vv~~~~~~~~ 277 (291)
..|+++.++-.. ..|.+....+.++|.|+++++|++.++.+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 309 (364)
T PTZ00230 265 DVRVPDSGIELGSIADPSNDSPTSITSKSITGAVSVAGFLVPSYL 309 (364)
T ss_pred cccccccchhcccccCCccCCCCCccccceeeeeehHHHHHHHHH
Confidence 345555444321 1232223335667788888887765554444
No 64
>smart00019 SF_P Pulmonary surfactant proteins. Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-C, a component of surfactant, is a highly hydrophobic peptide of 35 amino acid residues which is processed from a larger precursor protein. SP-C is post-translationally modified by the covalent attachment of two palmitoyl groups on two adjacent cysteines
Probab=24.70 E-value=72 Score=26.60 Aligned_cols=7 Identities=43% Similarity=0.681 Sum_probs=2.6
Q ss_pred cEEEEee
Q 022862 260 KTFAIIV 266 (291)
Q Consensus 260 ~~~~ivv 266 (291)
|.+.|||
T Consensus 34 KrLlivV 40 (191)
T smart00019 34 KRLLIVV 40 (191)
T ss_pred eeEEEEE
Confidence 3333333
No 65
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=23.51 E-value=40 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=10.3
Q ss_pred CCCCcccEEEecceeEEeecCC
Q 022862 221 CGTADYGDMFLGKCYVRYSTGK 242 (291)
Q Consensus 221 C~~~~gg~v~~~~C~lRYe~~~ 242 (291)
|+..-.+--+...|++--+...
T Consensus 45 Cp~ey~~YClHG~C~yI~dl~~ 66 (139)
T PHA03099 45 CGPEGDGYCLHGDCIHARDIDG 66 (139)
T ss_pred CChhhCCEeECCEEEeeccCCC
Confidence 3333334334445666655433
No 66
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.50 E-value=76 Score=29.36 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhcC
Q 022862 16 LLFSFIIVFLSIPS 29 (291)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (291)
|||-|||--+.|+.
T Consensus 2 llf~fl~n~l~l~~ 15 (295)
T TIGR01478 2 LLFTFLFNALLLSQ 15 (295)
T ss_pred eeHHHHHHHHhcch
Confidence 45666655555444
No 67
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.18 E-value=98 Score=23.50 Aligned_cols=20 Identities=15% Similarity=0.542 Sum_probs=9.9
Q ss_pred EEeeHHHHHHHHHHHHHHHH
Q 022862 263 AIIVGLLAGVALIIIFLTFI 282 (291)
Q Consensus 263 ~ivv~vv~~~~~~~~~~~~~ 282 (291)
-|-+.+|.++.+++++++|+
T Consensus 34 gm~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 34 GMWFLVICGIFILLVILWFV 53 (94)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 34455565554444444444
No 68
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.11 E-value=87 Score=21.17 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=9.4
Q ss_pred EEEeeHHHHHHHHHHHHHH
Q 022862 262 FAIIVGLLAGVALIIIFLT 280 (291)
Q Consensus 262 ~~ivv~vv~~~~~~~~~~~ 280 (291)
+.++|+|+..++++.+.++
T Consensus 3 ~~~iV~i~iv~~lLg~~I~ 21 (50)
T PF12606_consen 3 AFLIVSIFIVMGLLGLSIC 21 (50)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 3445666555444444333
No 69
>PHA02844 putative transmembrane protein; Provisional
Probab=22.05 E-value=43 Score=24.49 Aligned_cols=9 Identities=11% Similarity=-0.094 Sum_probs=3.9
Q ss_pred HHHHHHHhh
Q 022862 279 LTFIRKVFG 287 (291)
Q Consensus 279 ~~~~~~~~~ 287 (291)
.+++.|..+
T Consensus 65 ~flYLK~~~ 73 (75)
T PHA02844 65 TFLYLKAVP 73 (75)
T ss_pred HHHHHheec
Confidence 344454443
No 70
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=21.42 E-value=1.7e+02 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=11.5
Q ss_pred CCCCcEEEEeeHHHHHHHHHH
Q 022862 256 NEGEKTFAIIVGLLAGVALII 276 (291)
Q Consensus 256 ~~~~~~~~ivv~vv~~~~~~~ 276 (291)
..+...++.|++|+.+++++.
T Consensus 179 ~~~~p~v~~i~~Vi~g~~~~g 199 (211)
T PF02124_consen 179 AQGFPMVISIIGVICGAGALG 199 (211)
T ss_pred cCCCcEEEehHHHHHHHHHHH
Confidence 344455556667766655443
No 71
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=21.35 E-value=43 Score=18.45 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=6.3
Q ss_pred EeeHHHHHHHHH
Q 022862 264 IIVGLLAGVALI 275 (291)
Q Consensus 264 ivv~vv~~~~~~ 275 (291)
||-|+++++++.
T Consensus 4 iIaPi~VGvvl~ 15 (21)
T PF13955_consen 4 IIAPIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhHHHHHHHH
Confidence 345666555544
No 72
>PTZ00370 STEVOR; Provisional
Probab=21.24 E-value=84 Score=29.14 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=5.0
Q ss_pred HHHHHHHHHhh
Q 022862 277 IFLTFIRKVFG 287 (291)
Q Consensus 277 ~~~~~~~~~~~ 287 (291)
+.+.|+.||||
T Consensus 273 ilYiwlyrrRK 283 (296)
T PTZ00370 273 ILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHhhc
Confidence 33445544443
No 73
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=20.90 E-value=1.5e+02 Score=24.71 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=9.6
Q ss_pred CCcEEEEeeHHHHHHH
Q 022862 258 GEKTFAIIVGLLAGVA 273 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~ 273 (291)
++.+..||++||..+.
T Consensus 60 gtAIaGIVfgiVfimg 75 (155)
T PF10873_consen 60 GTAIAGIVFGIVFIMG 75 (155)
T ss_pred cceeeeeehhhHHHHH
Confidence 3446777777765433
No 74
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.62 E-value=61 Score=31.93 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhcc
Q 022862 277 IFLTFIRKVFGEH 289 (291)
Q Consensus 277 ~~~~~~~~~~~~~ 289 (291)
+|+..+.||+|+|
T Consensus 409 ~~~~~~~~r~~~~ 421 (492)
T PHA03286 409 LCIAGLYRRRRRH 421 (492)
T ss_pred HHhHhHhhhhhhh
Confidence 3444343344444
No 75
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.55 E-value=60 Score=26.33 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=7.8
Q ss_pred cccEEEecceeEEeecC
Q 022862 225 DYGDMFLGKCYVRYSTG 241 (291)
Q Consensus 225 ~gg~v~~~~C~lRYe~~ 241 (291)
.++.++. |.+-+-.-
T Consensus 44 ~e~s~Yr--ci~pfG~v 58 (129)
T PF15099_consen 44 AEWSCYR--CIMPFGVV 58 (129)
T ss_pred CCceEEE--EEEEehHH
Confidence 3444443 77766543
Done!