Query 022862
Match_columns 291
No_of_seqs 179 out of 1459
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 4.9E-28 1.7E-32 190.6 10.9 105 37-142 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 4.2E-27 1.4E-31 185.3 9.9 104 37-142 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 4.4E-23 1.5E-27 162.3 10.8 96 148-243 3-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 3.3E-22 1.1E-26 157.2 10.8 97 147-243 2-108 (108)
5 2ks1_B Epidermal growth factor 94.7 0.012 4E-07 37.9 1.5 31 261-291 10-43 (44)
6 2l2t_A Receptor tyrosine-prote 93.9 0.012 4.1E-07 37.8 0.3 31 261-291 9-42 (44)
7 2jwa_A Receptor tyrosine-prote 93.4 0.012 4.3E-07 37.7 -0.3 9 261-269 14-22 (44)
8 2k1k_A Ephrin type-A receptor 92.6 0.011 3.6E-07 36.9 -1.5 28 257-284 9-36 (38)
9 1afo_A Glycophorin A; integral 75.7 1.6 5.3E-05 26.9 2.0 29 260-288 11-39 (40)
10 2jwa_A Receptor tyrosine-prote 75.2 1.8 6.1E-05 27.6 2.3 10 261-270 11-20 (44)
11 2knc_B Integrin beta-3; transm 70.7 0.95 3.2E-05 32.6 0.2 25 260-284 9-33 (79)
12 1cd1_A CD1, MCD1D.1; immunolog 68.5 1 3.5E-05 40.5 0.0 12 87-98 92-103 (315)
13 2ks1_B Epidermal growth factor 65.9 2.8 9.7E-05 26.6 1.7 20 269-288 24-43 (44)
14 1iij_A ERBB-2 receptor protein 61.8 1.4 4.7E-05 26.7 -0.3 9 278-286 26-34 (35)
15 2k9y_A Ephrin type-A receptor 60.5 0.92 3.1E-05 28.1 -1.4 17 260-276 11-27 (41)
16 2l2t_A Receptor tyrosine-prote 60.1 3.3 0.00011 26.3 1.2 19 271-289 25-43 (44)
17 2k9j_B Integrin beta-3; transm 60.0 2.2 7.4E-05 27.0 0.3 27 260-286 8-34 (43)
18 2k1a_A Integrin alpha-IIB; sin 56.5 3.6 0.00012 25.9 0.9 25 260-284 9-33 (42)
19 2l8s_A Integrin alpha-1; trans 55.5 5.9 0.0002 26.2 1.9 24 260-283 8-31 (54)
20 2knc_A Integrin alpha-IIB; tra 53.2 6.8 0.00023 26.0 1.9 24 260-283 11-34 (54)
21 2l9u_A Receptor tyrosine-prote 52.5 12 0.00043 22.3 2.7 11 279-289 26-36 (40)
22 2j5l_A Apical membrane antigen 36.2 7.5 0.00026 37.5 0.0 31 258-288 509-540 (581)
23 1q55_A EP-cadherin, C-cadherin 34.4 8.4 0.00029 39.7 0.0 11 261-271 707-717 (880)
24 1s7q_A H-2KB, H-2 class I hist 34.1 8.5 0.00029 35.0 0.0 12 87-98 92-103 (348)
25 2l34_A TYRO protein tyrosine k 33.5 9.7 0.00033 22.5 0.2 19 262-280 10-28 (33)
26 2klu_A T-cell surface glycopro 26.5 25 0.00087 24.2 1.3 17 264-280 12-29 (70)
27 2lx0_A Membrane fusion protein 23.7 23 0.00079 20.0 0.6 8 277-284 21-28 (32)
28 4b19_A PEPA1; toxin, toxin apo 22.3 48 0.0016 19.1 1.8 23 265-288 8-30 (30)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.95 E-value=4.9e-28 Score=190.64 Aligned_cols=105 Identities=28% Similarity=0.655 Sum_probs=94.7
Q ss_pred CCcccccCCCCCCCCCCchHHHHHHHHHHHHHhhhccCC--ceeEEEeCCCCCccEEEEEecCCCCChhchHHHHHHHHH
Q 022862 37 TDSFVFGGCAQQKYTPSSAYESNLNSLLTSLVNSATYSS--YNNFTIMGSSPQDVVYGLYQCRGDLSMPDCATCVARAVT 114 (291)
Q Consensus 37 ~~~~~~~~C~~~~~t~~s~f~~nl~~ll~~L~~~a~~~~--f~~~~~~~g~~~~~vYglaqCr~Dls~~~C~~Cl~~a~~ 114 (291)
.+.++++.|+.++++++++|++||+.||+.|+++++.++ |++... ++.++++||||+|||||+++++|..||+.|+.
T Consensus 2 ~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~-~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRA-GSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEEC-CSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeec-cCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999987743 444443 24566899999999999999999999999999
Q ss_pred hhcccccCCceEEEEcCceeeeeeccee
Q 022862 115 QVGGLCYQDCGGALQLQGCYVKYDNATF 142 (291)
Q Consensus 115 ~~~~~C~~~~~a~i~~d~C~lRYs~~~F 142 (291)
++++.||++++|+||+++|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.94 E-value=4.2e-27 Score=185.29 Aligned_cols=104 Identities=27% Similarity=0.638 Sum_probs=95.0
Q ss_pred CCcccccCCCCCCCCCCchHHHHHHHHHHHHHhhhccC--CceeEEEeCCCCC-ccEEEEEecCCCCChhchHHHHHHHH
Q 022862 37 TDSFVFGGCAQQKYTPSSAYESNLNSLLTSLVNSATYS--SYNNFTIMGSSPQ-DVVYGLYQCRGDLSMPDCATCVARAV 113 (291)
Q Consensus 37 ~~~~~~~~C~~~~~t~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~~~g~~~-~~vYglaqCr~Dls~~~C~~Cl~~a~ 113 (291)
++.++++.|++++++++++|++|++.||+.|+++++.+ +|++++. |..+ ++||||+||+||+++++|..||+.++
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~--g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~ 79 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRA--GSGGAPTAYGRATCKQSISQSDCTACLSNLV 79 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEEC--CCTTCCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEec--CCCCCCcEEEEEecCCCCChHHHHHHHHHHH
Confidence 56788999999999999999999999999999998753 5777765 4544 79999999999999999999999999
Q ss_pred HhhcccccCCceEEEEcCceeeeeeccee
Q 022862 114 TQVGGLCYQDCGGALQLQGCYVKYDNATF 142 (291)
Q Consensus 114 ~~~~~~C~~~~~a~i~~d~C~lRYs~~~F 142 (291)
.++++.||++++|+||+++|+||||+++|
T Consensus 80 ~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 80 NRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp TTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.89 E-value=4.4e-23 Score=162.27 Aligned_cols=96 Identities=25% Similarity=0.415 Sum_probs=81.4
Q ss_pred ceeeeeccCCCCCC-chhHhHHHHHHHHHHHhc---CC-Cceec-----CCCcEEEEEEccCCCChhhHHHHHHHHHHHh
Q 022862 148 KTVVFKKCGPSVGY-EPDAMGRRDAVLQGLMTA---SG-PYRVG-----GARDVQGLAQCVGDLSAGECQDCLVQAIGRL 217 (291)
Q Consensus 148 ~~~~~~~c~~~~~~-~~~f~~~l~~ll~~l~~~---~~-~f~~~-----~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i 217 (291)
+..+++.|++.+.. ++.|+.+++.||..|+.. ++ .|+.+ +.++||||+||++||++++|+.||+.++.++
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 44567789876544 578999999999999753 22 33331 3458999999999999999999999999999
Q ss_pred hhcCCCCcccEEEecceeEEeecCCC
Q 022862 218 KSDCGTADYGDMFLGKCYVRYSTGKA 243 (291)
Q Consensus 218 ~~~C~~~~gg~v~~~~C~lRYe~~~F 243 (291)
+++|++++||+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.87 E-value=3.3e-22 Score=157.20 Aligned_cols=97 Identities=25% Similarity=0.419 Sum_probs=82.1
Q ss_pred cceeeeeccCCCCCC-chhHhHHHHHHHHHHHhc---CC-Cceec-----CCCcEEEEEEccCCCChhhHHHHHHHHHHH
Q 022862 147 DKTVVFKKCGPSVGY-EPDAMGRRDAVLQGLMTA---SG-PYRVG-----GARDVQGLAQCVGDLSAGECQDCLVQAIGR 216 (291)
Q Consensus 147 ~~~~~~~~c~~~~~~-~~~f~~~l~~ll~~l~~~---~~-~f~~~-----~~~~vYglaQC~~DLs~~dC~~CL~~a~~~ 216 (291)
++.+.++.|++.+.. ++.|+++++.||..|+.. ++ +|+.+ +.++||||+||+|||++++|+.||+.++.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 355778889875443 578999999999999743 22 45542 125899999999999999999999999999
Q ss_pred hhhcCCCCcccEEEecceeEEeecCCC
Q 022862 217 LKSDCGTADYGDMFLGKCYVRYSTGKA 243 (291)
Q Consensus 217 i~~~C~~~~gg~v~~~~C~lRYe~~~F 243 (291)
++++|++++||+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999988
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=94.68 E-value=0.012 Score=37.91 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=15.7
Q ss_pred EEEEeeHHHHHHHHH---HHHHHHHHHHhhccCC
Q 022862 261 TFAIIVGLLAGVALI---IIFLTFIRKVFGEHGK 291 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~---~~~~~~~~~~~~~~~~ 291 (291)
+-+|..+|+++++++ ++.++|++|+++++.|
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 334666666544432 3344566666655444
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.89 E-value=0.012 Score=37.81 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=15.4
Q ss_pred EEEEeeHHHHHHHHH---HHHHHHHHHHhhccCC
Q 022862 261 TFAIIVGLLAGVALI---IIFLTFIRKVFGEHGK 291 (291)
Q Consensus 261 ~~~ivv~vv~~~~~~---~~~~~~~~~~~~~~~~ 291 (291)
+-+|..+|+++++++ ++.++|++|++|++.|
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 334666666544432 2344556666654443
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=93.40 E-value=0.012 Score=37.69 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=5.2
Q ss_pred EEEEeeHHH
Q 022862 261 TFAIIVGLL 269 (291)
Q Consensus 261 ~~~ivv~vv 269 (291)
+.++|||++
T Consensus 14 Ia~~vVGvl 22 (44)
T 2jwa_A 14 IISAVVGIL 22 (44)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555666644
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=92.56 E-value=0.011 Score=36.90 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=17.6
Q ss_pred CCCcEEEEeeHHHHHHHHHHHHHHHHHH
Q 022862 257 EGEKTFAIIVGLLAGVALIIIFLTFIRK 284 (291)
Q Consensus 257 ~~~~~~~ivv~vv~~~~~~~~~~~~~~~ 284 (291)
+.+.+..||+++++++++++...+|+||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHee
Confidence 3445677788888777766554455544
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=75.74 E-value=1.6 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=20.4
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHHHhhc
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~~~~~ 288 (291)
.+..|+.+++++++..++.+.|..|+.+|
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888888888777767766665555
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=75.18 E-value=1.8 Score=27.59 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=4.7
Q ss_pred EEEEeeHHHH
Q 022862 261 TFAIIVGLLA 270 (291)
Q Consensus 261 ~~~ivv~vv~ 270 (291)
+-.|+.++++
T Consensus 11 ~~~Ia~~vVG 20 (44)
T 2jwa_A 11 LTSIISAVVG 20 (44)
T ss_dssp HHHHHHHHHH
T ss_pred ccchHHHHHH
Confidence 3334455554
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=70.73 E-value=0.95 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=16.9
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRK 284 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~ 284 (291)
.+++||.+|+++++++.+++.++||
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888887766555554554
No 12
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=68.51 E-value=1 Score=40.54 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=8.6
Q ss_pred CccEEEEEecCC
Q 022862 87 QDVVYGLYQCRG 98 (291)
Q Consensus 87 ~~~vYglaqCr~ 98 (291)
+.++..+.-|.-
T Consensus 92 ~ht~Q~~~gCe~ 103 (315)
T 1cd1_A 92 PIEIQLSAGCEM 103 (315)
T ss_dssp CEEEEEEEEEEE
T ss_pred cEEEEEEEEEEE
Confidence 467778888864
No 13
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=65.92 E-value=2.8 Score=26.64 Aligned_cols=20 Identities=30% Similarity=0.182 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 022862 269 LAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 269 v~~~~~~~~~~~~~~~~~~~ 288 (291)
++.++++++.+.-.++.++|
T Consensus 24 ~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHhhhhHhhcc
Confidence 33567777777777777766
No 14
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=61.84 E-value=1.4 Score=26.67 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=4.6
Q ss_pred HHHHHHHHh
Q 022862 278 FLTFIRKVF 286 (291)
Q Consensus 278 ~~~~~~~~~ 286 (291)
++.+++||+
T Consensus 26 ~~~~~iRRr 34 (35)
T 1iij_A 26 VVGILIKRR 34 (35)
T ss_dssp TTTHHHHHC
T ss_pred HhheEEeec
Confidence 334566554
No 15
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=60.47 E-value=0.92 Score=28.12 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=10.4
Q ss_pred cEEEEeeHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALII 276 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~ 276 (291)
.+..|++++++++++++
T Consensus 11 ~~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 11 GNLAVIGGVAVGVVLLL 27 (41)
T ss_dssp SSTHHHHHHHHHHHHHH
T ss_pred ceEEEEeehhHHHHHHH
Confidence 44456777777766554
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.08 E-value=3.3 Score=26.32 Aligned_cols=19 Identities=11% Similarity=0.016 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 022862 271 GVALIIIFLTFIRKVFGEH 289 (291)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~ 289 (291)
.++++++.+.-.+|.++|.
T Consensus 25 ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHhhhhhhhhcc
Confidence 4666666676666666553
No 17
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=60.01 E-value=2.2 Score=27.00 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=17.1
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHHHh
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRKVF 286 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~~~ 286 (291)
++++|+.+++++++++.+.+..+||..
T Consensus 8 n~~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 8 DILVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888877665555444455543
No 18
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=56.54 E-value=3.6 Score=25.89 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=18.1
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIRK 284 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~~ 284 (291)
..+.|+++++++++++.+.++.+||
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888877766665555
No 19
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=55.50 E-value=5.9 Score=26.25 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=16.1
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIR 283 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~ 283 (291)
..++|+++++++++++.+.++.+|
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888777765444444
No 20
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.22 E-value=6.8 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=15.9
Q ss_pred cEEEEeeHHHHHHHHHHHHHHHHH
Q 022862 260 KTFAIIVGLLAGVALIIIFLTFIR 283 (291)
Q Consensus 260 ~~~~ivv~vv~~~~~~~~~~~~~~ 283 (291)
..++|+++++++++++.+.++.+|
T Consensus 11 p~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888777665444333
No 21
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=52.50 E-value=12 Score=22.33 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=6.7
Q ss_pred HHHHHHHhhcc
Q 022862 279 LTFIRKVFGEH 289 (291)
Q Consensus 279 ~~~~~~~~~~~ 289 (291)
.+++||-+|.|
T Consensus 26 tflywrgrrhh 36 (40)
T 2l9u_A 26 TFLYWRGRRHH 36 (40)
T ss_dssp HHHHHHHHHHC
T ss_pred eeEEEcccccc
Confidence 35567776654
No 22
>2j5l_A Apical membrane antigen 1; malaria vaccine candidate, apical membrane antigen 1, hypothetical protein, immunoglobulin domain; 2.9A {Plasmodium falciparum} SCOP: g.61.1.1 PDB: 1hn6_A
Probab=36.19 E-value=7.5 Score=37.50 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCcEEEEeeHHHHHHHHHHH-HHHHHHHHhhc
Q 022862 258 GEKTFAIIVGLLAGVALIII-FLTFIRKVFGE 288 (291)
Q Consensus 258 ~~~~~~ivv~vv~~~~~~~~-~~~~~~~~~~~ 288 (291)
..+.++|||++.++++++++ .++++||..++
T Consensus 509 ~~~~~~ii~~~~~~~~~~a~~~~~~~~k~~~~ 540 (581)
T 2j5l_A 509 TYDNMKIIIASSAAVAVLATILMVYLYKRKGN 540 (581)
T ss_dssp --------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34456666666655554443 33334544433
No 23
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=34.40 E-value=8.4 Score=39.66 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=0.0
Q ss_pred EEEEeeHHHHH
Q 022862 261 TFAIIVGLLAG 271 (291)
Q Consensus 261 ~~~ivv~vv~~ 271 (291)
+++|++++++.
T Consensus 707 ii~il~~~~~l 717 (880)
T 1q55_A 707 ILVILGSVLAL 717 (880)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 24
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=34.10 E-value=8.5 Score=35.05 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=7.7
Q ss_pred CccEEEEEecCC
Q 022862 87 QDVVYGLYQCRG 98 (291)
Q Consensus 87 ~~~vYglaqCr~ 98 (291)
+.+...+.-|.-
T Consensus 92 ~ht~Q~~~GCe~ 103 (348)
T 1s7q_A 92 SHTIQVISGCEV 103 (348)
T ss_dssp CCEEEEEEEEEE
T ss_pred ceeeEEEeEEEE
Confidence 456677777753
No 25
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=33.53 E-value=9.7 Score=22.55 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=9.1
Q ss_pred EEEeeHHHHHHHHHHHHHH
Q 022862 262 FAIIVGLLAGVALIIIFLT 280 (291)
Q Consensus 262 ~~ivv~vv~~~~~~~~~~~ 280 (291)
..||++-+++++++.+.++
T Consensus 10 aGIVvgdi~~t~~i~~~vy 28 (33)
T 2l34_A 10 AGIVVGDLVLTVLIALAVY 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeEeHHHHHHHHHHHHHHh
Confidence 3455555555554443333
No 26
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=26.52 E-value=25 Score=24.17 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=9.9
Q ss_pred EeeHHHHHHHHHH-HHHH
Q 022862 264 IIVGLLAGVALII-IFLT 280 (291)
Q Consensus 264 ivv~vv~~~~~~~-~~~~ 280 (291)
||+|.++++++++ ++++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 6777766655553 4444
No 27
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=23.66 E-value=23 Score=20.00 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022862 277 IFLTFIRK 284 (291)
Q Consensus 277 ~~~~~~~~ 284 (291)
+++.++..
T Consensus 21 fgfwlfky 28 (32)
T 2lx0_A 21 FGFWLFKY 28 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 28
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=22.28 E-value=48 Score=19.08 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=10.0
Q ss_pred eeHHHHHHHHHHHHHHHHHHHhhc
Q 022862 265 IVGLLAGVALIIIFLTFIRKVFGE 288 (291)
Q Consensus 265 vv~vv~~~~~~~~~~~~~~~~~~~ 288 (291)
+-+++++.+ +.+.-.|+++|.+|
T Consensus 8 ia~visGci-valF~hWL~~r~~k 30 (30)
T 4b19_A 8 IAPVISGCA-IAFFSYWLSRRNTK 30 (30)
T ss_dssp TTTTHHHHH-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHH-HHHHHHHHHhccCC
Confidence 344444333 22333456665543
Done!