Query 022862
Match_columns 291
No_of_seqs 179 out of 1459
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 12:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022862.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022862hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 16.9 42 0.0031 18.3 2.1 18 265-282 6-24 (34)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 12.9 67 0.0049 21.6 3.0 7 282-288 52-58 (100)
3 d1ucra_ a.4.5.45 (A:) Dissimil 10.5 1.1E+02 0.0079 19.7 3.1 27 168-194 38-65 (74)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 10.3 12 0.00084 25.5 -2.1 10 280-289 38-47 (91)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.2 86 0.0063 21.3 2.5 8 281-288 56-63 (107)
6 d1weoa_ g.44.1.1 (A:) Cellulos 7.0 59 0.0043 21.8 0.6 28 204-241 44-71 (93)
7 d2axti1 f.23.37.1 (I:1-35) Pho 5.9 1.6E+02 0.012 15.8 2.0 13 16-28 13-25 (35)
8 d1g25a_ g.44.1.1 (A:) TFIIH Ma 5.3 1.4E+02 0.0099 18.0 1.7 20 103-122 29-48 (65)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.0 2.1E+02 0.015 14.9 2.0 12 13-24 20-31 (34)
10 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.0 2.8E+02 0.021 13.7 2.1 17 10-26 6-22 (26)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.88 E-value=42 Score=18.27 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=10.1
Q ss_pred eeHHHHHHHHHH-HHHHHH
Q 022862 265 IVGLLAGVALII-IFLTFI 282 (291)
Q Consensus 265 vv~vv~~~~~~~-~~~~~~ 282 (291)
+|++++++.++. ++++|+
T Consensus 6 lv~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeeee
Confidence 356666665553 455554
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.89 E-value=67 Score=21.58 Aligned_cols=7 Identities=14% Similarity=-0.330 Sum_probs=2.7
Q ss_pred HHHHhhc
Q 022862 282 IRKVFGE 288 (291)
Q Consensus 282 ~~~~~~~ 288 (291)
++.|+||
T Consensus 52 ~~~r~~~ 58 (100)
T d3dtub2 52 WRFHEKR 58 (100)
T ss_dssp HHHBTTT
T ss_pred hhhhccC
Confidence 3333333
No 3
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=10.46 E-value=1.1e+02 Score=19.65 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCC-CceecCCCcEEEE
Q 022862 168 RRDAVLQGLMTASG-PYRVGGARDVQGL 194 (291)
Q Consensus 168 ~l~~ll~~l~~~~~-~f~~~~~~~vYgl 194 (291)
.++.++++|++... .|-.++.-++|||
T Consensus 38 ~vKK~~~~lV~e~~L~ywSSGSTTMYgl 65 (74)
T d1ucra_ 38 EVKKILTALVNDEVLEYWSSGSTTMYGL 65 (74)
T ss_dssp HHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHhccceEEEEcCCCcEEecc
Confidence 45777888877643 5665677789997
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.32 E-value=12 Score=25.52 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=4.4
Q ss_pred HHHHHHhhcc
Q 022862 280 TFIRKVFGEH 289 (291)
Q Consensus 280 ~~~~~~~~~~ 289 (291)
++++|.|+|+
T Consensus 38 ~~~~ryR~~~ 47 (91)
T d1fftb2 38 GFAWKYRASN 47 (91)
T ss_dssp TTTTTTTTST
T ss_pred hhheeeeccC
Confidence 3445444443
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.23 E-value=86 Score=21.33 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.4
Q ss_pred HHHHHhhc
Q 022862 281 FIRKVFGE 288 (291)
Q Consensus 281 ~~~~~~~~ 288 (291)
+.+|.|+|
T Consensus 56 ~~~~~r~~ 63 (107)
T d3ehbb2 56 CIVRFNRR 63 (107)
T ss_dssp HHHHSBTT
T ss_pred Hhhhhhcc
Confidence 34444433
No 6
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.00 E-value=59 Score=21.80 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCcccEEEecceeEEeecC
Q 022862 204 GECQDCLVQAIGRLKSDCGTADYGDMFLGKCYVRYSTG 241 (291)
Q Consensus 204 ~dC~~CL~~a~~~i~~~C~~~~gg~v~~~~C~lRYe~~ 241 (291)
.-|+.|...-..+-.++|+ .|.-||.-.
T Consensus 44 PvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~ 71 (93)
T d1weoa_ 44 PACRPCYEYERREGTQNCP----------QCKTRYKRL 71 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCT----------TTCCCCCCC
T ss_pred ccchHHHHHHHhccCccCc----------ccCChhhhh
Confidence 4699999999999999997 899999753
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.87 E-value=1.6e+02 Score=15.84 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhc
Q 022862 16 LLFSFIIVFLSIP 28 (291)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (291)
.+|+.|+++.+|+
T Consensus 13 ~fFv~lFiFGFLS 25 (35)
T d2axti1 13 TFFVLLFVFGFLS 25 (35)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcc
Confidence 4556666666653
No 8
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.34 E-value=1.4e+02 Score=18.00 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=16.6
Q ss_pred hchHHHHHHHHHhhcccccC
Q 022862 103 PDCATCVARAVTQVGGLCYQ 122 (291)
Q Consensus 103 ~~C~~Cl~~a~~~~~~~C~~ 122 (291)
.-|..|+......-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 57999999998777767885
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.97 E-value=2.1e+02 Score=14.88 Aligned_cols=12 Identities=50% Similarity=0.855 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 022862 13 SLLLLFSFIIVF 24 (291)
Q Consensus 13 ~~~~~~~~~~~~ 24 (291)
++-.+|+|+.++
T Consensus 20 slamlfvfiali 31 (34)
T d1xmeb2 20 SLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 10
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.05 E-value=2.8e+02 Score=13.69 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHhh
Q 022862 10 STTSLLLLFSFIIVFLS 26 (291)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (291)
+|-.+..+|-.||+++.
T Consensus 6 aiw~fw~ffalli~ylq 22 (26)
T d1rzhh2 6 AIYSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Done!