Query 022864
Match_columns 291
No_of_seqs 321 out of 3427
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2230 Cfa Cyclopropane fatty 100.0 1.3E-50 2.8E-55 340.4 28.5 268 3-288 12-283 (283)
2 PF02353 CMAS: Mycolic acid cy 100.0 1.5E-50 3.2E-55 345.7 24.1 266 5-284 4-273 (273)
3 PRK11705 cyclopropane fatty ac 100.0 1.7E-41 3.7E-46 303.6 29.9 261 6-289 111-373 (383)
4 PLN02244 tocopherol O-methyltr 100.0 1.7E-25 3.7E-30 198.4 28.6 163 7-172 57-228 (340)
5 COG4106 Tam Trans-aconitate me 99.9 4.4E-25 9.6E-30 175.5 7.1 213 50-267 17-254 (257)
6 smart00828 PKS_MT Methyltransf 99.9 1.7E-22 3.8E-27 169.6 19.1 201 65-290 1-204 (224)
7 COG2226 UbiE Methylase involve 99.9 1.9E-21 4.1E-26 161.4 15.1 122 52-173 40-162 (238)
8 PLN02336 phosphoethanolamine N 99.9 8.7E-20 1.9E-24 169.5 25.9 217 52-289 255-475 (475)
9 PTZ00098 phosphoethanolamine N 99.9 1.5E-19 3.3E-24 154.9 24.1 244 13-289 15-263 (263)
10 PF01209 Ubie_methyltran: ubiE 99.9 2.5E-21 5.5E-26 162.2 12.4 119 55-173 39-159 (233)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.1E-21 6.8E-26 157.4 8.7 110 62-174 58-168 (243)
12 PF12847 Methyltransf_18: Meth 99.8 3.7E-20 8.1E-25 138.3 12.1 105 63-167 1-111 (112)
13 PLN02233 ubiquinone biosynthes 99.8 2.1E-19 4.5E-24 153.9 15.2 152 7-172 31-187 (261)
14 PF13847 Methyltransf_31: Meth 99.8 1.8E-19 3.8E-24 142.2 13.3 108 62-169 2-112 (152)
15 PRK14103 trans-aconitate 2-met 99.8 3.9E-19 8.6E-24 152.0 13.8 114 50-170 16-129 (255)
16 PRK01683 trans-aconitate 2-met 99.8 4.3E-18 9.4E-23 145.9 18.7 117 49-170 17-133 (258)
17 TIGR02752 MenG_heptapren 2-hep 99.8 2.4E-18 5.2E-23 145.1 16.2 118 53-170 35-154 (231)
18 PRK11207 tellurite resistance 99.8 1.4E-18 3E-23 142.8 14.0 111 55-167 22-134 (197)
19 PRK11036 putative S-adenosyl-L 99.8 1.3E-18 2.9E-23 148.8 13.9 118 51-171 33-153 (255)
20 PRK00107 gidB 16S rRNA methylt 99.8 8.4E-18 1.8E-22 136.2 16.4 115 51-169 33-147 (187)
21 PLN02396 hexaprenyldihydroxybe 99.8 1.8E-18 3.9E-23 151.2 13.3 108 62-171 130-239 (322)
22 PF08241 Methyltransf_11: Meth 99.8 1.3E-18 2.8E-23 125.6 9.7 94 68-165 1-95 (95)
23 KOG1270 Methyltransferases [Co 99.8 7.2E-19 1.6E-23 144.5 7.1 107 64-174 90-202 (282)
24 TIGR00477 tehB tellurite resis 99.8 8.4E-18 1.8E-22 137.9 13.4 111 55-168 22-134 (195)
25 PF05175 MTS: Methyltransferas 99.8 4.7E-17 1E-21 130.6 16.4 129 34-168 8-141 (170)
26 TIGR00138 gidB 16S rRNA methyl 99.8 2.6E-17 5.7E-22 133.0 14.7 101 63-167 42-142 (181)
27 PRK10258 biotin biosynthesis p 99.8 1.3E-17 2.8E-22 142.4 13.5 120 47-173 26-146 (251)
28 PF03848 TehB: Tellurite resis 99.8 3.5E-17 7.6E-22 131.8 14.4 112 55-169 22-135 (192)
29 TIGR02469 CbiT precorrin-6Y C5 99.7 1.3E-16 2.9E-21 121.0 15.1 114 52-168 8-123 (124)
30 TIGR00452 methyltransferase, p 99.7 7E-17 1.5E-21 140.6 15.3 120 50-170 108-228 (314)
31 KOG1540 Ubiquinone biosynthesi 99.7 4.9E-17 1.1E-21 133.0 13.3 120 53-172 90-219 (296)
32 PRK15068 tRNA mo(5)U34 methylt 99.7 8.3E-17 1.8E-21 141.5 15.4 119 51-170 110-229 (322)
33 PRK15451 tRNA cmo(5)U34 methyl 99.7 9.6E-17 2.1E-21 136.5 14.9 108 61-169 54-166 (247)
34 PF08242 Methyltransf_12: Meth 99.7 1.8E-18 4E-23 126.2 2.7 96 68-163 1-99 (99)
35 TIGR02072 BioC biotin biosynth 99.7 1.2E-16 2.7E-21 135.1 13.5 122 47-172 15-140 (240)
36 PRK11873 arsM arsenite S-adeno 99.7 1.8E-16 3.9E-21 136.9 14.6 110 60-169 74-185 (272)
37 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.1E-16 2.3E-21 140.5 12.8 114 52-168 101-216 (340)
38 PRK12335 tellurite resistance 99.7 6.6E-16 1.4E-20 134.2 17.7 103 63-168 120-224 (287)
39 PRK08317 hypothetical protein; 99.7 4.5E-16 9.7E-21 131.6 15.6 117 53-170 9-127 (241)
40 PRK00216 ubiE ubiquinone/menaq 99.7 7.5E-16 1.6E-20 130.3 16.8 152 5-170 7-161 (239)
41 PF13489 Methyltransf_23: Meth 99.7 1E-16 2.2E-21 127.3 10.4 99 61-171 20-119 (161)
42 PF13649 Methyltransf_25: Meth 99.7 6.7E-17 1.5E-21 118.4 8.5 94 67-161 1-101 (101)
43 smart00138 MeTrc Methyltransfe 99.7 2.6E-16 5.6E-21 134.8 13.3 147 20-167 57-242 (264)
44 TIGR00740 methyltransferase, p 99.7 3.1E-16 6.7E-21 132.9 13.5 108 62-170 52-164 (239)
45 PRK08287 cobalt-precorrin-6Y C 99.7 1E-15 2.2E-20 124.9 16.0 113 53-169 21-133 (187)
46 PRK00121 trmB tRNA (guanine-N( 99.7 3.9E-16 8.5E-21 128.7 12.1 108 63-170 40-159 (202)
47 PRK15001 SAM-dependent 23S rib 99.7 7.4E-16 1.6E-20 137.1 14.3 127 35-167 206-340 (378)
48 TIGR00080 pimt protein-L-isoas 99.7 1.2E-15 2.6E-20 127.1 13.2 113 50-168 64-178 (215)
49 PRK13944 protein-L-isoaspartat 99.7 2.9E-15 6.3E-20 123.8 15.2 112 51-168 60-174 (205)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2.5E-15 5.5E-20 125.7 14.9 115 53-169 29-145 (223)
51 PRK06922 hypothetical protein; 99.7 7.6E-16 1.6E-20 143.2 12.0 109 60-169 415-539 (677)
52 PRK05785 hypothetical protein; 99.7 3.4E-15 7.4E-20 125.1 14.6 89 63-160 51-140 (226)
53 PRK07580 Mg-protoporphyrin IX 99.7 5.2E-15 1.1E-19 124.6 15.8 152 1-162 3-161 (230)
54 PF05401 NodS: Nodulation prot 99.7 1E-15 2.2E-20 122.0 10.7 114 51-168 30-147 (201)
55 PRK09489 rsmC 16S ribosomal RN 99.7 2.7E-15 5.9E-20 132.7 14.6 111 56-168 189-304 (342)
56 TIGR03840 TMPT_Se_Te thiopurin 99.7 7.9E-15 1.7E-19 121.5 16.4 117 52-170 23-155 (213)
57 TIGR02716 C20_methyl_CrtF C-20 99.7 3.8E-15 8.3E-20 130.8 15.4 117 52-170 138-257 (306)
58 PRK13942 protein-L-isoaspartat 99.6 4.1E-15 8.8E-20 123.5 14.5 113 49-167 62-176 (212)
59 TIGR00537 hemK_rel_arch HemK-r 99.6 3.2E-15 7E-20 121.0 13.5 106 61-170 17-143 (179)
60 KOG4300 Predicted methyltransf 99.6 1.9E-15 4.1E-20 119.9 11.2 110 58-168 71-183 (252)
61 PLN03075 nicotianamine synthas 99.6 3.8E-15 8.3E-20 127.5 13.9 105 62-167 122-233 (296)
62 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.6E-15 3.4E-20 124.4 11.1 107 63-169 16-134 (194)
63 PF07021 MetW: Methionine bios 99.6 6.3E-16 1.4E-20 122.9 7.6 151 61-243 11-165 (193)
64 COG2242 CobL Precorrin-6B meth 99.6 1.3E-14 2.8E-19 114.8 14.6 116 53-172 24-140 (187)
65 TIGR03587 Pse_Me-ase pseudamin 99.6 1.4E-14 3E-19 119.4 15.2 114 46-169 28-144 (204)
66 COG2813 RsmC 16S RNA G1207 met 99.6 8.1E-15 1.8E-19 124.4 13.8 128 34-168 135-267 (300)
67 COG4123 Predicted O-methyltran 99.6 3.7E-15 8E-20 124.0 11.3 113 57-169 38-172 (248)
68 PRK07402 precorrin-6B methylas 99.6 1.8E-14 3.9E-19 118.4 15.4 113 54-170 31-145 (196)
69 PF13659 Methyltransf_26: Meth 99.6 4.2E-15 9.2E-20 111.7 9.9 104 64-168 1-116 (117)
70 TIGR03533 L3_gln_methyl protei 99.6 2E-14 4.4E-19 124.4 15.3 107 62-168 120-252 (284)
71 PRK05134 bifunctional 3-demeth 99.6 1.6E-14 3.5E-19 121.9 14.4 115 52-169 37-153 (233)
72 PRK14967 putative methyltransf 99.6 1.8E-14 4E-19 120.7 14.3 116 51-168 24-160 (223)
73 PRK00377 cbiT cobalt-precorrin 99.6 2.9E-14 6.3E-19 117.3 15.1 110 56-168 33-146 (198)
74 TIGR02021 BchM-ChlM magnesium 99.6 2.4E-14 5.3E-19 119.7 14.3 116 46-165 36-156 (219)
75 KOG1271 Methyltransferases [Ge 99.6 7.6E-15 1.7E-19 114.2 10.1 127 45-171 45-185 (227)
76 PRK14121 tRNA (guanine-N(7)-)- 99.6 2.1E-14 4.5E-19 127.4 13.8 117 54-170 113-238 (390)
77 TIGR00536 hemK_fam HemK family 99.6 3.4E-14 7.3E-19 123.3 14.6 105 64-168 115-245 (284)
78 TIGR03534 RF_mod_PrmC protein- 99.6 4.4E-14 9.5E-19 120.5 14.9 117 50-167 75-217 (251)
79 COG2264 PrmA Ribosomal protein 99.6 2.3E-14 5.1E-19 122.3 12.8 131 24-168 133-264 (300)
80 PRK11805 N5-glutamine S-adenos 99.6 4.4E-14 9.5E-19 123.4 14.8 104 64-167 134-263 (307)
81 TIGR01983 UbiG ubiquinone bios 99.6 3.9E-14 8.6E-19 118.8 13.9 105 63-169 45-151 (224)
82 COG2518 Pcm Protein-L-isoaspar 99.6 5E-14 1.1E-18 113.8 13.3 111 50-168 59-170 (209)
83 PRK14966 unknown domain/N5-glu 99.6 3.4E-14 7.3E-19 126.8 13.5 115 50-167 240-381 (423)
84 TIGR00406 prmA ribosomal prote 99.6 6E-14 1.3E-18 121.9 14.8 103 62-169 158-261 (288)
85 PF08003 Methyltransf_9: Prote 99.6 5.7E-14 1.2E-18 119.1 14.1 121 51-172 103-224 (315)
86 PRK13255 thiopurine S-methyltr 99.6 1.3E-13 2.7E-18 114.7 16.0 112 53-169 27-157 (218)
87 PRK00312 pcm protein-L-isoaspa 99.6 7.5E-14 1.6E-18 116.1 14.7 110 51-168 66-176 (212)
88 TIGR01177 conserved hypothetic 99.6 6.9E-14 1.5E-18 123.9 15.0 116 53-170 172-297 (329)
89 PRK04266 fibrillarin; Provisio 99.6 9.1E-14 2E-18 116.0 14.4 108 57-168 66-177 (226)
90 PLN02585 magnesium protoporphy 99.6 9.7E-14 2.1E-18 121.1 14.4 97 63-164 144-247 (315)
91 PLN02336 phosphoethanolamine N 99.6 4.3E-14 9.4E-19 131.5 12.9 114 52-169 26-144 (475)
92 PRK11088 rrmA 23S rRNA methylt 99.5 8.2E-14 1.8E-18 120.3 13.3 98 62-171 84-185 (272)
93 PRK00517 prmA ribosomal protei 99.5 8.7E-14 1.9E-18 118.6 13.2 129 20-169 86-215 (250)
94 PF06325 PrmA: Ribosomal prote 99.5 4.1E-14 8.9E-19 121.9 11.2 131 23-170 131-262 (295)
95 PRK14968 putative methyltransf 99.5 1.3E-13 2.8E-18 112.3 13.6 106 61-168 21-149 (188)
96 PRK06202 hypothetical protein; 99.5 1.1E-13 2.5E-18 116.7 12.7 105 61-170 58-169 (232)
97 PRK09328 N5-glutamine S-adenos 99.5 2.6E-13 5.6E-18 117.4 15.3 117 51-167 96-238 (275)
98 TIGR03704 PrmC_rel_meth putati 99.5 2E-13 4.4E-18 116.1 14.0 116 50-168 72-217 (251)
99 PF01135 PCMT: Protein-L-isoas 99.5 1.2E-13 2.6E-18 113.7 12.0 114 49-168 58-173 (209)
100 PRK11188 rrmJ 23S rRNA methylt 99.5 1.5E-13 3.3E-18 113.7 12.4 108 52-170 39-168 (209)
101 COG2890 HemK Methylase of poly 99.5 3.3E-13 7.2E-18 116.3 13.9 102 66-168 113-239 (280)
102 PRK01544 bifunctional N5-gluta 99.5 3E-13 6.5E-18 125.8 14.0 105 63-167 138-269 (506)
103 TIGR03438 probable methyltrans 99.5 5.5E-13 1.2E-17 116.6 14.8 109 62-170 62-180 (301)
104 PRK13943 protein-L-isoaspartat 99.5 5.9E-13 1.3E-17 116.5 14.8 112 50-167 67-180 (322)
105 PRK10901 16S rRNA methyltransf 99.5 6.3E-13 1.4E-17 121.7 14.5 116 54-170 235-375 (427)
106 PHA03411 putative methyltransf 99.5 1.2E-12 2.6E-17 110.6 14.7 140 13-168 25-184 (279)
107 COG2519 GCD14 tRNA(1-methylade 99.5 1E-12 2.3E-17 108.5 13.8 115 52-171 83-199 (256)
108 COG4976 Predicted methyltransf 99.5 2.1E-14 4.6E-19 115.8 3.2 137 11-168 87-226 (287)
109 PRK14902 16S rRNA methyltransf 99.5 9E-13 2E-17 121.4 14.2 114 56-169 243-381 (444)
110 TIGR00446 nop2p NOL1/NOP2/sun 99.5 9.7E-13 2.1E-17 112.9 13.4 113 58-170 66-202 (264)
111 PRK14903 16S rRNA methyltransf 99.5 9.1E-13 2E-17 120.4 13.7 114 57-170 231-369 (431)
112 PRK14904 16S rRNA methyltransf 99.5 1.3E-12 2.8E-17 120.3 14.8 114 57-170 244-380 (445)
113 cd02440 AdoMet_MTases S-adenos 99.5 8.3E-13 1.8E-17 95.9 10.7 100 66-166 1-103 (107)
114 PRK14901 16S rRNA methyltransf 99.5 1.4E-12 3.1E-17 119.6 14.4 116 55-170 244-387 (434)
115 PRK04457 spermidine synthase; 99.4 9.8E-13 2.1E-17 112.5 11.9 108 62-169 65-179 (262)
116 PF00891 Methyltransf_2: O-met 99.4 3.1E-12 6.8E-17 108.5 14.8 110 53-171 90-203 (241)
117 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.7E-12 3.8E-17 119.4 13.4 119 48-173 282-405 (443)
118 PRK10909 rsmD 16S rRNA m(2)G96 99.4 3.6E-12 7.7E-17 104.2 13.6 119 50-170 39-162 (199)
119 smart00650 rADc Ribosomal RNA 99.4 1.7E-12 3.6E-17 104.1 11.4 109 53-168 3-114 (169)
120 TIGR00563 rsmB ribosomal RNA s 99.4 3E-12 6.4E-17 117.3 14.4 118 53-170 228-371 (426)
121 TIGR02081 metW methionine bios 99.4 2E-12 4.4E-17 106.0 11.1 103 53-168 5-110 (194)
122 PF05724 TPMT: Thiopurine S-me 99.4 5.6E-12 1.2E-16 104.6 13.7 116 52-169 26-157 (218)
123 PTZ00146 fibrillarin; Provisio 99.4 3.6E-12 7.8E-17 108.9 12.7 106 57-166 126-236 (293)
124 PRK13256 thiopurine S-methyltr 99.4 1.6E-11 3.5E-16 101.8 15.7 111 56-169 36-165 (226)
125 KOG1541 Predicted protein carb 99.4 2.3E-12 5E-17 103.5 9.2 120 43-169 28-162 (270)
126 PRK15128 23S rRNA m(5)C1962 me 99.4 4.5E-12 9.8E-17 114.2 11.8 107 63-170 220-342 (396)
127 PRK03522 rumB 23S rRNA methylu 99.4 6.4E-12 1.4E-16 110.7 12.5 114 49-167 159-274 (315)
128 PRK00811 spermidine synthase; 99.4 5.1E-12 1.1E-16 109.4 11.7 108 61-168 74-192 (283)
129 PLN02781 Probable caffeoyl-CoA 99.4 6.3E-12 1.4E-16 105.8 11.8 114 49-168 57-179 (234)
130 TIGR00438 rrmJ cell division p 99.4 7.3E-12 1.6E-16 102.2 11.8 99 60-169 29-148 (188)
131 PF02390 Methyltransf_4: Putat 99.4 9E-12 2E-16 101.8 11.6 104 65-168 19-134 (195)
132 PF08704 GCD14: tRNA methyltra 99.4 1.4E-11 3E-16 103.6 12.6 117 50-171 27-150 (247)
133 TIGR02085 meth_trns_rumB 23S r 99.3 1.8E-11 3.8E-16 110.2 13.5 116 47-167 217-334 (374)
134 PRK11783 rlmL 23S rRNA m(2)G24 99.3 6.9E-12 1.5E-16 121.3 10.7 105 63-168 538-657 (702)
135 PF01596 Methyltransf_3: O-met 99.3 2.6E-11 5.6E-16 99.6 12.3 120 43-168 28-156 (205)
136 KOG2361 Predicted methyltransf 99.3 6.5E-12 1.4E-16 102.5 7.9 106 66-172 74-188 (264)
137 PF06080 DUF938: Protein of un 99.3 3.2E-11 7E-16 97.5 11.2 117 51-168 14-142 (204)
138 PHA03412 putative methyltransf 99.3 2.6E-11 5.7E-16 100.3 10.9 95 63-162 49-158 (241)
139 TIGR00417 speE spermidine synt 99.3 6.1E-11 1.3E-15 102.2 13.0 107 61-167 70-186 (270)
140 PLN02366 spermidine synthase 99.3 1.5E-11 3.3E-16 107.1 9.2 108 61-168 89-207 (308)
141 KOG2904 Predicted methyltransf 99.3 1.3E-10 2.7E-15 96.6 14.0 113 61-173 146-291 (328)
142 PLN02232 ubiquinone biosynthes 99.3 1.9E-11 4.1E-16 97.0 8.7 81 91-171 1-85 (160)
143 COG4122 Predicted O-methyltran 99.3 4.8E-11 1E-15 98.0 11.2 116 47-168 46-167 (219)
144 TIGR00479 rumA 23S rRNA (uraci 99.3 9E-11 2E-15 107.9 14.2 115 47-166 276-395 (431)
145 PLN02672 methionine S-methyltr 99.3 4.7E-11 1E-15 118.1 12.8 106 64-169 119-280 (1082)
146 PF01739 CheR: CheR methyltran 99.3 5.6E-11 1.2E-15 96.9 11.1 127 40-166 8-174 (196)
147 PLN02476 O-methyltransferase 99.3 1.1E-10 2.3E-15 99.7 12.7 117 46-168 104-229 (278)
148 PF03291 Pox_MCEL: mRNA cappin 99.2 3.4E-11 7.3E-16 105.9 9.4 109 63-172 62-191 (331)
149 PF10294 Methyltransf_16: Puta 99.2 1.5E-10 3.3E-15 92.9 12.4 123 47-170 23-159 (173)
150 COG2263 Predicted RNA methylas 99.2 1.1E-10 2.4E-15 92.2 11.0 82 58-143 40-121 (198)
151 PF05185 PRMT5: PRMT5 arginine 99.2 1.1E-10 2.4E-15 106.7 12.6 128 37-164 156-294 (448)
152 COG0220 Predicted S-adenosylme 99.2 1E-10 2.2E-15 97.3 10.9 105 64-168 49-165 (227)
153 KOG3010 Methyltransferase [Gen 99.2 2.2E-11 4.7E-16 99.4 6.6 97 66-165 36-135 (261)
154 PRK01581 speE spermidine synth 99.2 7.1E-11 1.5E-15 103.6 10.1 108 61-168 148-269 (374)
155 PF05891 Methyltransf_PK: AdoM 99.2 7.3E-11 1.6E-15 95.9 8.8 120 49-169 35-163 (218)
156 COG1092 Predicted SAM-dependen 99.2 1.1E-10 2.3E-15 104.2 10.4 106 64-171 218-340 (393)
157 TIGR00095 RNA methyltransferas 99.2 6.6E-10 1.4E-14 90.5 13.5 106 63-170 49-162 (189)
158 PRK03612 spermidine synthase; 99.2 8.4E-11 1.8E-15 110.1 9.2 107 61-168 295-416 (521)
159 PF01170 UPF0020: Putative RNA 99.2 6.4E-10 1.4E-14 89.8 12.7 109 51-159 16-143 (179)
160 COG1352 CheR Methylase of chem 99.2 4.1E-10 8.8E-15 95.7 11.5 146 19-166 54-240 (268)
161 PF02527 GidB: rRNA small subu 99.2 1.1E-09 2.4E-14 88.3 13.5 120 43-166 26-147 (184)
162 KOG1975 mRNA cap methyltransfe 99.1 3E-10 6.5E-15 96.4 10.3 109 61-170 115-240 (389)
163 PF03602 Cons_hypoth95: Conser 99.1 3.8E-10 8.2E-15 91.2 10.5 110 62-172 41-158 (183)
164 PRK14896 ksgA 16S ribosomal RN 99.1 3.9E-10 8.5E-15 96.5 10.9 89 49-142 15-103 (258)
165 PRK04338 N(2),N(2)-dimethylgua 99.1 5.2E-10 1.1E-14 100.5 11.9 100 63-166 57-157 (382)
166 PRK11727 23S rRNA mA1618 methy 99.1 2.2E-09 4.7E-14 93.8 15.1 81 63-143 114-202 (321)
167 PTZ00338 dimethyladenosine tra 99.1 5.4E-10 1.2E-14 96.9 11.0 92 49-143 22-114 (294)
168 PF05219 DREV: DREV methyltran 99.1 1.3E-09 2.8E-14 90.8 12.6 96 63-169 94-190 (265)
169 PF12147 Methyltransf_20: Puta 99.1 2.8E-09 6.1E-14 89.9 14.7 105 62-166 134-248 (311)
170 PLN02589 caffeoyl-CoA O-methyl 99.1 1.1E-09 2.4E-14 92.4 12.4 115 47-167 66-190 (247)
171 PF10672 Methyltrans_SAM: S-ad 99.1 3.4E-10 7.5E-15 97.1 9.2 107 63-170 123-241 (286)
172 COG1041 Predicted DNA modifica 99.1 8.8E-10 1.9E-14 95.6 11.7 113 54-168 188-311 (347)
173 KOG1499 Protein arginine N-met 99.1 4.9E-10 1.1E-14 96.7 10.0 103 61-165 58-165 (346)
174 PRK00274 ksgA 16S ribosomal RN 99.1 4.9E-10 1.1E-14 96.6 9.8 97 50-154 29-126 (272)
175 COG2265 TrmA SAM-dependent met 99.1 1.7E-09 3.6E-14 98.3 12.8 119 44-167 274-396 (432)
176 TIGR02143 trmA_only tRNA (urac 99.1 1.8E-09 3.8E-14 96.4 12.7 111 49-167 184-311 (353)
177 PRK05031 tRNA (uracil-5-)-meth 99.1 2.8E-09 6E-14 95.6 13.5 111 49-167 193-320 (362)
178 PF02475 Met_10: Met-10+ like- 99.1 7.6E-10 1.6E-14 90.3 8.9 100 61-164 99-199 (200)
179 KOG2899 Predicted methyltransf 99.0 8.2E-10 1.8E-14 90.2 8.4 105 61-166 56-208 (288)
180 PRK10611 chemotaxis methyltran 99.0 1.5E-09 3.3E-14 93.4 10.3 105 63-167 115-262 (287)
181 COG3963 Phospholipid N-methylt 99.0 2E-09 4.3E-14 83.1 9.7 147 10-170 4-159 (194)
182 PRK04148 hypothetical protein; 99.0 7.4E-09 1.6E-13 78.4 12.7 105 53-171 6-113 (134)
183 KOG1269 SAM-dependent methyltr 99.0 1.7E-09 3.8E-14 95.8 10.7 159 8-170 58-218 (364)
184 KOG1500 Protein arginine N-met 99.0 1.8E-09 3.8E-14 92.2 10.2 103 62-166 176-281 (517)
185 TIGR00755 ksgA dimethyladenosi 99.0 5.6E-09 1.2E-13 89.2 12.9 99 49-155 15-116 (253)
186 PRK01544 bifunctional N5-gluta 99.0 2.9E-09 6.2E-14 99.4 11.8 126 43-168 320-463 (506)
187 COG0357 GidB Predicted S-adeno 99.0 5.9E-09 1.3E-13 85.5 11.8 98 64-165 68-166 (215)
188 PRK11933 yebU rRNA (cytosine-C 99.0 7.6E-09 1.7E-13 95.1 13.6 111 60-170 110-245 (470)
189 PLN02823 spermine synthase 99.0 9.8E-09 2.1E-13 90.5 12.2 106 62-167 102-220 (336)
190 PF02384 N6_Mtase: N-6 DNA Met 99.0 4.1E-09 8.8E-14 92.9 9.8 121 50-170 33-186 (311)
191 KOG3191 Predicted N6-DNA-methy 99.0 1.7E-08 3.8E-13 79.0 12.0 107 63-170 43-171 (209)
192 COG0742 N6-adenine-specific me 98.9 2E-08 4.3E-13 80.2 12.4 120 50-170 28-157 (187)
193 KOG2940 Predicted methyltransf 98.9 1.2E-09 2.7E-14 88.5 5.1 108 62-172 71-179 (325)
194 COG0421 SpeE Spermidine syntha 98.9 6.7E-09 1.4E-13 89.1 9.2 118 49-166 59-189 (282)
195 PF05148 Methyltransf_8: Hypot 98.9 5.7E-09 1.2E-13 84.2 8.2 102 51-171 59-162 (219)
196 KOG3420 Predicted RNA methylas 98.9 3.9E-09 8.4E-14 79.5 6.7 91 51-143 36-127 (185)
197 KOG1661 Protein-L-isoaspartate 98.9 1.1E-08 2.4E-13 82.0 9.4 111 51-167 68-193 (237)
198 TIGR00478 tly hemolysin TlyA f 98.9 6.1E-09 1.3E-13 86.8 7.7 101 50-165 61-169 (228)
199 PF05958 tRNA_U5-meth_tr: tRNA 98.9 3.7E-08 8.1E-13 87.9 12.7 105 45-154 179-300 (352)
200 COG2520 Predicted methyltransf 98.8 3.6E-08 7.9E-13 86.3 11.8 106 62-172 187-294 (341)
201 PF09445 Methyltransf_15: RNA 98.8 7.5E-09 1.6E-13 81.3 6.6 75 65-141 1-80 (163)
202 COG0030 KsgA Dimethyladenosine 98.8 2.7E-08 5.8E-13 83.8 10.4 90 49-142 16-107 (259)
203 TIGR00308 TRM1 tRNA(guanine-26 98.8 4.3E-08 9.2E-13 87.8 12.2 101 64-168 45-148 (374)
204 PRK00050 16S rRNA m(4)C1402 me 98.8 1.4E-08 3.1E-13 87.7 8.5 88 50-139 6-99 (296)
205 COG0116 Predicted N6-adenine-s 98.8 6.5E-08 1.4E-12 85.3 12.7 120 49-168 177-345 (381)
206 PF01564 Spermine_synth: Sperm 98.8 1.8E-08 3.8E-13 85.5 8.9 109 62-170 75-194 (246)
207 KOG0820 Ribosomal RNA adenine 98.8 3.5E-08 7.5E-13 82.2 9.5 89 50-141 45-134 (315)
208 COG0144 Sun tRNA and rRNA cyto 98.8 1.9E-07 4E-12 83.5 14.6 115 57-171 150-292 (355)
209 PF08123 DOT1: Histone methyla 98.8 7E-08 1.5E-12 79.2 10.6 116 49-165 28-156 (205)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.2E-07 2.5E-12 92.2 13.9 120 50-169 176-349 (702)
211 KOG2915 tRNA(1-methyladenosine 98.7 1.7E-07 3.8E-12 78.1 12.0 114 52-170 94-213 (314)
212 KOG3045 Predicted RNA methylas 98.7 3.9E-08 8.5E-13 81.3 7.7 98 52-170 168-267 (325)
213 PRK00536 speE spermidine synth 98.7 1.2E-07 2.7E-12 80.4 10.4 109 51-168 57-172 (262)
214 COG3897 Predicted methyltransf 98.7 8.2E-08 1.8E-12 76.3 8.5 118 53-174 69-186 (218)
215 PF01728 FtsJ: FtsJ-like methy 98.7 2.6E-08 5.7E-13 80.7 6.0 108 51-169 8-141 (181)
216 KOG2187 tRNA uracil-5-methyltr 98.6 9.6E-08 2.1E-12 86.3 7.9 140 20-167 343-490 (534)
217 PF09243 Rsm22: Mitochondrial 98.6 5.7E-07 1.2E-11 77.6 12.3 121 49-171 19-143 (274)
218 PF03141 Methyltransf_29: Puta 98.6 2.7E-08 5.8E-13 89.9 3.9 102 63-171 117-223 (506)
219 COG2521 Predicted archaeal met 98.6 3.6E-08 7.9E-13 80.3 4.3 108 59-168 130-246 (287)
220 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 7.9E-07 1.7E-11 77.0 12.1 113 58-170 80-222 (283)
221 KOG3178 Hydroxyindole-O-methyl 98.6 3E-07 6.6E-12 79.8 9.4 100 64-171 178-279 (342)
222 COG4076 Predicted RNA methylas 98.6 7.8E-08 1.7E-12 75.8 5.1 98 65-165 34-133 (252)
223 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 2.1E-07 4.5E-12 78.7 8.0 118 51-169 42-201 (256)
224 KOG1663 O-methyltransferase [S 98.6 1.2E-06 2.7E-11 71.6 11.9 112 50-167 63-183 (237)
225 PF13679 Methyltransf_32: Meth 98.5 2.7E-06 5.9E-11 65.9 12.2 100 61-166 23-130 (141)
226 TIGR02987 met_A_Alw26 type II 98.5 1.2E-06 2.7E-11 82.6 12.3 108 63-170 31-199 (524)
227 PF00398 RrnaAD: Ribosomal RNA 98.5 2.9E-06 6.4E-11 72.8 12.7 104 49-159 16-123 (262)
228 TIGR03439 methyl_EasF probable 98.5 5E-06 1.1E-10 72.8 14.1 116 53-170 68-200 (319)
229 PF04672 Methyltransf_19: S-ad 98.5 3.7E-06 7.9E-11 71.1 12.2 154 19-173 15-196 (267)
230 PF01269 Fibrillarin: Fibrilla 98.4 5.2E-06 1.1E-10 67.9 11.6 107 58-168 68-179 (229)
231 PF07942 N2227: N2227-like pro 98.4 5.3E-06 1.1E-10 70.6 12.2 102 62-165 55-200 (270)
232 COG0500 SmtA SAM-dependent met 98.4 7.5E-06 1.6E-10 63.7 12.4 104 67-172 52-160 (257)
233 PF03059 NAS: Nicotianamine sy 98.4 8.3E-06 1.8E-10 69.7 12.8 103 64-166 121-229 (276)
234 PRK10742 putative methyltransf 98.4 2.3E-06 5E-11 71.5 9.0 89 53-143 76-177 (250)
235 TIGR01444 fkbM_fam methyltrans 98.4 1.6E-06 3.5E-11 67.2 7.7 60 66-125 1-60 (143)
236 PRK11760 putative 23S rRNA C24 98.4 3.4E-06 7.3E-11 73.6 10.3 97 51-160 191-296 (357)
237 COG0293 FtsJ 23S rRNA methylas 98.4 7.1E-06 1.5E-10 66.7 11.4 110 49-169 30-161 (205)
238 KOG2730 Methylase [General fun 98.3 3.3E-07 7.2E-12 74.1 2.2 101 63-165 94-200 (263)
239 PF11968 DUF3321: Putative met 98.3 2.6E-06 5.6E-11 69.4 7.2 90 64-171 52-153 (219)
240 KOG3201 Uncharacterized conser 98.3 4.1E-07 8.8E-12 70.0 2.4 121 49-169 15-142 (201)
241 COG4262 Predicted spermidine s 98.2 1.3E-05 2.9E-10 69.7 10.6 108 62-170 288-410 (508)
242 KOG1331 Predicted methyltransf 98.2 2E-06 4.3E-11 72.6 5.1 99 62-171 44-147 (293)
243 PF13578 Methyltransf_24: Meth 98.2 1.1E-06 2.4E-11 64.6 2.8 98 68-167 1-105 (106)
244 KOG3987 Uncharacterized conser 98.2 1.7E-06 3.7E-11 69.4 3.7 145 63-243 112-258 (288)
245 TIGR00006 S-adenosyl-methyltra 98.2 1.5E-05 3.1E-10 69.2 9.5 90 50-140 7-102 (305)
246 PF05971 Methyltransf_10: Prot 98.2 1.2E-05 2.7E-10 69.3 9.0 79 64-143 103-190 (299)
247 COG1889 NOP1 Fibrillarin-like 98.1 3.2E-05 7E-10 62.0 10.5 105 59-168 72-181 (231)
248 COG1189 Predicted rRNA methyla 98.1 3E-05 6.6E-10 63.9 10.2 106 51-165 66-176 (245)
249 KOG1122 tRNA and rRNA cytosine 98.1 5.4E-05 1.2E-09 67.2 11.6 113 59-171 237-375 (460)
250 KOG1709 Guanidinoacetate methy 98.1 4.4E-05 9.6E-10 61.8 9.6 110 50-165 89-204 (271)
251 PF04816 DUF633: Family of unk 98.0 5.5E-05 1.2E-09 62.2 10.3 100 67-168 1-102 (205)
252 PF01861 DUF43: Protein of unk 98.0 0.00024 5.2E-09 59.0 13.9 103 60-165 41-147 (243)
253 KOG3115 Methyltransferase-like 98.0 2E-05 4.4E-10 63.1 7.2 106 63-168 60-184 (249)
254 COG0275 Predicted S-adenosylme 98.0 0.00015 3.2E-09 62.1 12.6 86 50-136 10-102 (314)
255 PF07091 FmrO: Ribosomal RNA m 98.0 4.8E-05 1E-09 63.6 8.7 83 62-145 104-186 (251)
256 COG4798 Predicted methyltransf 97.9 4.2E-05 9E-10 61.0 6.9 115 54-168 39-167 (238)
257 KOG4589 Cell division protein 97.8 0.00021 4.6E-09 56.7 9.2 99 61-170 67-187 (232)
258 KOG0822 Protein kinase inhibit 97.8 0.00013 2.8E-09 66.5 8.6 130 35-165 336-476 (649)
259 PF06962 rRNA_methylase: Putat 97.7 0.00025 5.5E-09 54.2 8.8 78 89-168 1-93 (140)
260 COG0286 HsdM Type I restrictio 97.7 0.00079 1.7E-08 62.9 13.0 150 13-170 141-329 (489)
261 COG5459 Predicted rRNA methyla 97.6 0.00031 6.8E-09 61.1 8.3 112 60-171 110-229 (484)
262 KOG4058 Uncharacterized conser 97.6 0.00077 1.7E-08 51.4 9.2 115 49-168 58-173 (199)
263 KOG2793 Putative N2,N2-dimethy 97.6 0.00075 1.6E-08 56.8 10.1 107 63-171 86-203 (248)
264 PF04445 SAM_MT: Putative SAM- 97.5 0.00051 1.1E-08 57.2 8.2 89 53-143 63-164 (234)
265 PF11599 AviRa: RRNA methyltra 97.5 0.0023 5E-08 52.1 11.4 119 49-167 33-214 (246)
266 KOG2352 Predicted spermine/spe 97.5 0.0011 2.3E-08 60.4 10.6 103 65-169 50-163 (482)
267 PF01795 Methyltransf_5: MraW 97.4 0.00018 4E-09 62.4 4.6 87 51-138 8-101 (310)
268 KOG1562 Spermidine synthase [A 97.4 0.0002 4.3E-09 60.9 4.6 153 15-167 70-236 (337)
269 COG2384 Predicted SAM-dependen 97.4 0.0033 7.1E-08 51.5 11.0 102 63-166 16-119 (226)
270 KOG2798 Putative trehalase [Ca 97.3 0.0016 3.5E-08 55.9 9.2 103 63-167 150-296 (369)
271 PF02005 TRM: N2,N2-dimethylgu 97.3 0.0014 3E-08 59.1 9.0 103 63-169 49-156 (377)
272 PF04989 CmcI: Cephalosporin h 97.2 0.0012 2.6E-08 53.9 6.8 112 52-168 24-148 (206)
273 KOG2198 tRNA cytosine-5-methyl 97.2 0.0049 1.1E-07 54.3 10.8 114 59-172 151-301 (375)
274 PF03492 Methyltransf_7: SAM d 97.1 0.18 3.8E-06 44.9 21.1 120 53-172 6-188 (334)
275 COG1867 TRM1 N2,N2-dimethylgua 97.1 0.0037 7.9E-08 55.1 9.2 102 64-169 53-156 (380)
276 KOG1596 Fibrillarin and relate 97.1 0.0022 4.8E-08 53.0 7.1 109 57-170 150-264 (317)
277 COG1064 AdhP Zn-dependent alco 97.1 0.0062 1.4E-07 53.7 10.3 98 57-168 160-260 (339)
278 PLN02668 indole-3-acetate carb 97.0 0.016 3.4E-07 52.2 12.8 109 64-172 64-242 (386)
279 PHA01634 hypothetical protein 97.0 0.0049 1.1E-07 45.9 7.8 69 63-136 28-98 (156)
280 KOG2671 Putative RNA methylase 96.9 0.0021 4.6E-08 55.9 5.8 108 59-168 204-355 (421)
281 COG4627 Uncharacterized protei 96.9 0.00039 8.4E-09 53.5 1.2 48 125-172 41-91 (185)
282 PTZ00357 methyltransferase; Pr 96.8 0.011 2.4E-07 56.1 10.4 98 65-162 702-830 (1072)
283 PRK09424 pntA NAD(P) transhydr 96.8 0.013 2.8E-07 54.8 11.0 100 61-168 162-286 (509)
284 PF03141 Methyltransf_29: Puta 96.8 0.0018 3.9E-08 59.3 5.1 99 62-167 364-467 (506)
285 KOG0024 Sorbitol dehydrogenase 96.6 0.0088 1.9E-07 51.8 7.2 109 56-174 162-280 (354)
286 KOG2920 Predicted methyltransf 96.6 0.0028 6E-08 53.9 4.1 118 47-165 97-232 (282)
287 KOG1099 SAM-dependent methyltr 96.5 0.006 1.3E-07 50.2 5.6 96 64-170 42-166 (294)
288 KOG2078 tRNA modification enzy 96.5 0.0019 4.2E-08 57.6 2.8 63 61-125 247-311 (495)
289 COG1565 Uncharacterized conser 96.4 0.021 4.6E-07 50.4 8.9 88 53-144 67-163 (370)
290 KOG1501 Arginine N-methyltrans 96.4 0.0085 1.8E-07 53.9 6.5 72 64-136 67-141 (636)
291 COG3129 Predicted SAM-dependen 96.4 0.027 5.8E-07 46.5 8.5 78 63-143 78-166 (292)
292 cd08283 FDH_like_1 Glutathione 96.3 0.027 5.9E-07 51.1 9.4 107 57-167 178-306 (386)
293 TIGR00027 mthyl_TIGR00027 meth 96.2 0.074 1.6E-06 45.6 11.1 121 48-170 66-200 (260)
294 PF06859 Bin3: Bicoid-interact 96.2 0.0031 6.7E-08 45.9 2.1 38 130-167 1-44 (110)
295 PF02636 Methyltransf_28: Puta 96.2 0.024 5.1E-07 48.4 7.7 87 54-144 8-109 (252)
296 PRK11524 putative methyltransf 96.1 0.024 5.2E-07 49.2 7.8 58 49-109 195-252 (284)
297 PF01555 N6_N4_Mtase: DNA meth 96.0 0.022 4.8E-07 47.3 6.7 54 49-105 178-231 (231)
298 COG1063 Tdh Threonine dehydrog 96.0 0.12 2.6E-06 46.3 11.6 100 61-169 166-271 (350)
299 cd00315 Cyt_C5_DNA_methylase C 96.0 0.017 3.6E-07 50.0 5.9 72 65-143 1-75 (275)
300 COG4301 Uncharacterized conser 96.0 0.33 7.1E-06 40.8 12.9 109 62-170 77-196 (321)
301 KOG1227 Putative methyltransfe 95.9 0.0035 7.6E-08 53.6 1.5 95 63-162 194-290 (351)
302 PRK09880 L-idonate 5-dehydroge 95.9 0.073 1.6E-06 47.4 10.0 100 57-167 163-266 (343)
303 TIGR00561 pntA NAD(P) transhyd 95.9 0.049 1.1E-06 51.0 8.9 96 62-165 162-282 (511)
304 PRK13699 putative methylase; P 95.9 0.044 9.5E-07 46.0 7.8 58 50-110 151-208 (227)
305 KOG1253 tRNA methyltransferase 95.9 0.007 1.5E-07 55.2 3.2 104 62-169 108-218 (525)
306 KOG3924 Putative protein methy 95.8 0.049 1.1E-06 48.5 8.1 126 42-168 171-309 (419)
307 PF12692 Methyltransf_17: S-ad 95.8 0.027 5.9E-07 43.1 5.5 114 47-168 13-135 (160)
308 PF05711 TylF: Macrocin-O-meth 95.7 0.064 1.4E-06 45.4 8.2 126 43-170 53-215 (248)
309 cd08254 hydroxyacyl_CoA_DH 6-h 95.6 0.21 4.5E-06 44.0 11.8 94 60-167 162-263 (338)
310 COG3510 CmcI Cephalosporin hyd 95.5 0.078 1.7E-06 42.6 7.4 107 63-174 69-187 (237)
311 PF07757 AdoMet_MTase: Predict 95.5 0.011 2.4E-07 42.8 2.4 33 62-96 57-89 (112)
312 cd08230 glucose_DH Glucose deh 95.5 0.15 3.2E-06 45.6 10.2 96 61-167 170-269 (355)
313 PF03269 DUF268: Caenorhabditi 95.4 0.014 3.1E-07 45.4 3.0 100 64-171 2-115 (177)
314 PF11899 DUF3419: Protein of u 95.3 0.092 2E-06 47.4 8.2 76 15-106 1-76 (380)
315 COG1568 Predicted methyltransf 95.2 0.16 3.5E-06 43.2 8.6 102 63-166 152-259 (354)
316 TIGR02822 adh_fam_2 zinc-bindi 95.1 0.42 9.1E-06 42.3 11.8 95 57-167 159-254 (329)
317 PF07279 DUF1442: Protein of u 94.9 0.61 1.3E-05 38.3 11.1 101 63-168 41-149 (218)
318 PF00145 DNA_methylase: C-5 cy 94.7 0.16 3.5E-06 44.7 8.2 70 66-143 2-74 (335)
319 COG0686 Ald Alanine dehydrogen 94.6 0.12 2.6E-06 44.8 6.6 97 64-165 168-266 (371)
320 KOG2651 rRNA adenine N-6-methy 94.3 0.19 4.2E-06 44.6 7.4 59 46-105 135-194 (476)
321 cd08237 ribitol-5-phosphate_DH 94.3 0.45 9.9E-06 42.3 10.2 95 60-167 160-256 (341)
322 COG2933 Predicted SAM-dependen 94.1 0.31 6.8E-06 41.2 7.8 85 60-157 208-293 (358)
323 TIGR03366 HpnZ_proposed putati 94.1 0.23 5.1E-06 42.8 7.6 99 57-167 114-218 (280)
324 TIGR00497 hsdM type I restrict 94.0 0.91 2E-05 42.8 11.8 106 63-168 217-356 (501)
325 PF11312 DUF3115: Protein of u 94.0 0.1 2.2E-06 45.3 4.9 105 64-168 87-243 (315)
326 cd00401 AdoHcyase S-adenosyl-L 93.9 0.5 1.1E-05 43.2 9.6 98 52-167 189-289 (413)
327 PF05206 TRM13: Methyltransfer 93.9 0.26 5.6E-06 42.1 7.2 66 61-127 16-87 (259)
328 cd05188 MDR Medium chain reduc 93.6 0.37 8.1E-06 40.6 8.0 95 62-167 133-232 (271)
329 cd08281 liver_ADH_like1 Zinc-d 93.5 0.4 8.7E-06 43.2 8.4 100 57-167 185-290 (371)
330 cd08239 THR_DH_like L-threonin 93.5 0.81 1.8E-05 40.5 10.2 100 57-167 157-262 (339)
331 COG5379 BtaA S-adenosylmethion 93.5 0.51 1.1E-05 40.6 8.1 74 18-107 32-105 (414)
332 TIGR03451 mycoS_dep_FDH mycoth 93.4 0.82 1.8E-05 40.9 10.2 99 58-167 171-276 (358)
333 KOG2539 Mitochondrial/chloropl 93.4 0.2 4.2E-06 45.8 5.9 110 62-171 199-319 (491)
334 KOG0821 Predicted ribosomal RN 93.4 0.21 4.6E-06 41.1 5.5 75 50-126 37-111 (326)
335 cd08232 idonate-5-DH L-idonate 93.3 0.94 2E-05 40.0 10.2 96 59-167 161-262 (339)
336 PF00107 ADH_zinc_N: Zinc-bind 93.1 0.5 1.1E-05 35.4 7.2 84 73-169 1-91 (130)
337 PF10354 DUF2431: Domain of un 93.1 1.2 2.5E-05 35.4 9.4 100 70-169 3-127 (166)
338 KOG2352 Predicted spermine/spe 93.1 0.17 3.7E-06 46.5 5.1 109 63-171 295-420 (482)
339 COG0604 Qor NADPH:quinone redu 93.0 0.71 1.5E-05 40.9 8.9 102 55-168 134-242 (326)
340 COG3315 O-Methyltransferase in 92.7 0.81 1.7E-05 40.0 8.7 120 47-168 76-210 (297)
341 cd05565 PTS_IIB_lactose PTS_II 92.7 0.64 1.4E-05 33.4 6.7 75 66-166 2-77 (99)
342 PF02254 TrkA_N: TrkA-N domain 92.6 0.84 1.8E-05 33.5 7.5 87 72-168 4-97 (116)
343 PF03686 UPF0146: Uncharacteri 92.5 0.54 1.2E-05 35.3 6.3 90 64-171 14-106 (127)
344 TIGR00675 dcm DNA-methyltransf 92.4 0.25 5.5E-06 43.6 5.2 69 67-143 1-72 (315)
345 PRK01747 mnmC bifunctional tRN 92.4 0.52 1.1E-05 46.1 7.8 105 62-166 56-205 (662)
346 COG1255 Uncharacterized protei 92.3 1.5 3.3E-05 32.2 8.1 87 65-169 15-104 (129)
347 PRK05786 fabG 3-ketoacyl-(acyl 92.3 2.8 6.1E-05 34.8 11.3 103 63-168 4-136 (238)
348 PLN03154 putative allyl alcoho 92.1 0.81 1.8E-05 40.9 8.3 99 57-166 152-257 (348)
349 PRK11524 putative methyltransf 92.1 0.13 2.9E-06 44.6 3.0 53 114-166 8-79 (284)
350 TIGR00853 pts-lac PTS system, 92.0 1 2.3E-05 32.1 7.1 72 65-162 4-76 (95)
351 TIGR00518 alaDH alanine dehydr 91.9 0.52 1.1E-05 42.6 6.7 100 63-167 166-267 (370)
352 PF04072 LCM: Leucine carboxyl 91.9 0.91 2E-05 36.6 7.6 88 64-152 79-181 (183)
353 TIGR02825 B4_12hDH leukotriene 91.9 1.6 3.5E-05 38.3 9.8 98 57-166 132-236 (325)
354 PRK10458 DNA cytosine methylas 91.9 0.75 1.6E-05 42.8 7.8 97 43-142 64-181 (467)
355 cd08245 CAD Cinnamyl alcohol d 91.8 2.7 5.9E-05 36.8 11.2 96 59-167 158-256 (330)
356 cd08255 2-desacetyl-2-hydroxye 91.6 2.8 6E-05 35.7 10.7 95 58-166 92-189 (277)
357 cd08234 threonine_DH_like L-th 91.4 4.1 8.9E-05 35.7 11.9 98 57-167 153-257 (334)
358 PRK10309 galactitol-1-phosphat 91.4 0.8 1.7E-05 40.7 7.3 99 58-167 155-260 (347)
359 TIGR01202 bchC 2-desacetyl-2-h 91.3 1.3 2.8E-05 38.8 8.5 88 62-168 143-232 (308)
360 TIGR03201 dearomat_had 6-hydro 91.3 2.5 5.4E-05 37.6 10.5 99 58-167 161-272 (349)
361 COG0287 TyrA Prephenate dehydr 91.3 1.1 2.5E-05 38.7 7.9 89 65-163 4-94 (279)
362 cd08294 leukotriene_B4_DH_like 91.2 1.6 3.5E-05 38.2 9.1 98 57-166 137-240 (329)
363 PLN02740 Alcohol dehydrogenase 91.2 2.6 5.5E-05 38.2 10.5 98 57-167 192-300 (381)
364 KOG2912 Predicted DNA methylas 91.0 0.62 1.3E-05 40.6 5.8 74 67-141 106-189 (419)
365 cd08242 MDR_like Medium chain 90.8 4.7 0.0001 35.2 11.6 94 57-165 149-243 (319)
366 COG0270 Dcm Site-specific DNA 90.8 0.78 1.7E-05 40.7 6.6 74 64-143 3-80 (328)
367 PLN02586 probable cinnamyl alc 90.7 2.7 5.8E-05 37.7 10.2 95 61-167 181-278 (360)
368 cd05564 PTS_IIB_chitobiose_lic 90.7 1.1 2.4E-05 32.0 6.2 68 70-162 4-72 (96)
369 TIGR00936 ahcY adenosylhomocys 90.4 2.6 5.7E-05 38.5 9.6 89 62-168 193-283 (406)
370 PF10237 N6-adenineMlase: Prob 90.1 3.9 8.4E-05 32.3 9.2 96 62-168 24-124 (162)
371 PF11899 DUF3419: Protein of u 90.0 0.65 1.4E-05 42.0 5.4 62 110-171 272-338 (380)
372 cd05285 sorbitol_DH Sorbitol d 89.9 1.5 3.2E-05 38.9 7.7 100 57-167 156-265 (343)
373 PF02737 3HCDH_N: 3-hydroxyacy 89.8 4 8.6E-05 32.8 9.4 98 66-170 1-117 (180)
374 PRK08213 gluconate 5-dehydroge 89.8 5 0.00011 33.8 10.6 76 63-140 11-99 (259)
375 KOG1201 Hydroxysteroid 17-beta 89.7 3.1 6.7E-05 36.1 8.9 76 63-142 37-126 (300)
376 COG4017 Uncharacterized protei 89.5 2.3 5E-05 34.4 7.4 101 51-171 32-133 (254)
377 cd08261 Zn_ADH7 Alcohol dehydr 89.5 1.3 2.9E-05 39.0 7.1 99 57-166 153-257 (337)
378 cd08295 double_bond_reductase_ 89.4 2.2 4.7E-05 37.7 8.4 99 57-166 145-250 (338)
379 PF05050 Methyltransf_21: Meth 89.1 1.3 2.9E-05 34.4 6.1 54 69-122 1-61 (167)
380 PLN02827 Alcohol dehydrogenase 89.1 3.1 6.7E-05 37.6 9.2 97 59-166 189-294 (378)
381 PLN02494 adenosylhomocysteinas 89.0 2.2 4.8E-05 39.7 8.1 100 52-168 241-342 (477)
382 PF01262 AlaDh_PNT_C: Alanine 88.8 0.45 9.7E-06 37.8 3.2 97 63-164 19-136 (168)
383 cd08231 MDR_TM0436_like Hypoth 88.8 5.4 0.00012 35.5 10.6 95 62-167 176-280 (361)
384 COG1748 LYS9 Saccharopine dehy 88.6 1.9 4.2E-05 39.0 7.3 72 65-140 2-78 (389)
385 PRK08306 dipicolinate synthase 88.6 9.1 0.0002 33.5 11.4 87 63-165 151-239 (296)
386 PF02153 PDH: Prephenate dehyd 88.5 1.7 3.8E-05 37.1 6.9 75 77-163 1-75 (258)
387 cd08277 liver_alcohol_DH_like 88.5 5.8 0.00012 35.6 10.5 100 57-167 178-286 (365)
388 PRK08293 3-hydroxybutyryl-CoA 88.4 4.8 0.0001 34.9 9.6 95 65-165 4-118 (287)
389 PRK07109 short chain dehydroge 88.3 7.9 0.00017 34.3 11.2 76 63-140 7-95 (334)
390 cd08300 alcohol_DH_class_III c 88.3 4.1 8.9E-05 36.6 9.5 100 57-167 180-288 (368)
391 cd08236 sugar_DH NAD(P)-depend 88.2 1.8 3.9E-05 38.3 7.0 99 58-167 154-258 (343)
392 KOG2360 Proliferation-associat 88.1 1.7 3.6E-05 39.0 6.5 83 58-140 208-294 (413)
393 PF03721 UDPG_MGDP_dh_N: UDP-g 88.1 3.6 7.7E-05 33.3 8.0 100 65-169 1-122 (185)
394 PRK12939 short chain dehydroge 88.1 7.1 0.00015 32.5 10.3 75 63-139 6-93 (250)
395 TIGR02819 fdhA_non_GSH formald 88.0 6.3 0.00014 35.9 10.5 104 58-168 180-300 (393)
396 cd08293 PTGR2 Prostaglandin re 87.9 2.2 4.9E-05 37.7 7.4 96 60-166 149-253 (345)
397 PLN03209 translocon at the inn 87.9 6.8 0.00015 37.5 10.8 79 59-138 75-167 (576)
398 PRK05476 S-adenosyl-L-homocyst 87.4 5.7 0.00012 36.6 9.8 88 62-167 210-299 (425)
399 cd05213 NAD_bind_Glutamyl_tRNA 87.4 9.7 0.00021 33.5 11.0 97 61-168 175-273 (311)
400 cd08298 CAD2 Cinnamyl alcohol 87.4 10 0.00022 33.1 11.3 95 57-167 161-256 (329)
401 PF06460 NSP13: Coronavirus NS 87.3 8.1 0.00018 32.9 9.6 98 59-168 57-170 (299)
402 cd08238 sorbose_phosphate_red 87.1 4.2 9.1E-05 37.2 8.9 100 59-165 171-286 (410)
403 PRK07806 short chain dehydroge 87.0 15 0.00032 30.6 11.7 102 63-166 5-133 (248)
404 COG2961 ComJ Protein involved 87.0 9.8 0.00021 32.2 9.9 98 68-169 93-197 (279)
405 PRK07066 3-hydroxybutyryl-CoA 87.0 5 0.00011 35.5 8.9 98 64-167 7-119 (321)
406 PRK07530 3-hydroxybutyryl-CoA 86.8 9.7 0.00021 33.0 10.6 96 65-167 5-119 (292)
407 PRK06701 short chain dehydroge 86.8 10 0.00023 32.7 10.8 102 63-167 45-181 (290)
408 cd05278 FDH_like Formaldehyde 86.8 2 4.3E-05 38.0 6.4 97 59-166 163-266 (347)
409 PRK13699 putative methylase; P 86.7 0.71 1.5E-05 38.7 3.3 51 116-166 3-71 (227)
410 PLN02178 cinnamyl-alcohol dehy 86.6 4.5 9.8E-05 36.6 8.7 94 62-167 177-273 (375)
411 PRK05708 2-dehydropantoate 2-r 86.0 4.4 9.6E-05 35.5 8.1 97 65-169 3-106 (305)
412 cd08296 CAD_like Cinnamyl alco 85.9 6.8 0.00015 34.5 9.4 99 58-167 158-259 (333)
413 PRK08324 short chain dehydroge 85.9 7.9 0.00017 38.1 10.5 102 63-167 421-557 (681)
414 cd08233 butanediol_DH_like (2R 85.8 3.4 7.5E-05 36.7 7.5 100 57-167 166-272 (351)
415 PRK07819 3-hydroxybutyryl-CoA 85.5 7.8 0.00017 33.6 9.3 98 65-169 6-123 (286)
416 PRK07774 short chain dehydroge 85.4 14 0.0003 30.7 10.7 76 63-140 5-93 (250)
417 PLN02514 cinnamyl-alcohol dehy 85.4 16 0.00035 32.6 11.7 95 62-167 179-275 (357)
418 cd08285 NADP_ADH NADP(H)-depen 85.4 8.9 0.00019 34.0 10.0 99 57-166 160-265 (351)
419 cd08265 Zn_ADH3 Alcohol dehydr 85.0 12 0.00026 33.8 10.7 98 60-167 200-307 (384)
420 PRK07417 arogenate dehydrogena 84.9 6.9 0.00015 33.8 8.7 84 66-163 2-87 (279)
421 PF03514 GRAS: GRAS domain fam 84.8 22 0.00048 32.2 12.1 111 55-167 102-244 (374)
422 KOG0023 Alcohol dehydrogenase, 84.7 3 6.6E-05 36.6 6.1 100 59-168 177-280 (360)
423 PF01210 NAD_Gly3P_dh_N: NAD-d 84.6 5.5 0.00012 31.1 7.3 93 66-166 1-102 (157)
424 PRK06940 short chain dehydroge 84.6 17 0.00037 31.0 11.1 97 66-165 4-123 (275)
425 KOG2782 Putative SAM dependent 84.5 1.4 2.9E-05 36.4 3.7 57 50-106 30-86 (303)
426 PRK08594 enoyl-(acyl carrier p 84.5 16 0.00034 30.9 10.6 77 63-139 6-96 (257)
427 PRK08265 short chain dehydroge 84.4 14 0.0003 31.2 10.3 72 63-139 5-89 (261)
428 cd08286 FDH_like_ADH2 formalde 83.7 14 0.00031 32.6 10.4 97 59-166 162-265 (345)
429 PRK09590 celB cellobiose phosp 83.6 5.4 0.00012 29.0 6.2 73 66-164 3-78 (104)
430 PRK06181 short chain dehydroge 83.6 13 0.00029 31.2 9.9 73 65-139 2-87 (263)
431 PRK08217 fabG 3-ketoacyl-(acyl 83.5 8.2 0.00018 32.1 8.4 75 63-139 4-91 (253)
432 COG0863 DNA modification methy 83.5 5.9 0.00013 34.3 7.8 59 49-110 209-267 (302)
433 KOG2811 Uncharacterized conser 83.5 4.6 9.9E-05 36.0 6.8 63 63-126 182-247 (420)
434 PF02086 MethyltransfD12: D12 83.2 2.3 5E-05 36.1 5.0 57 51-109 8-64 (260)
435 PRK09260 3-hydroxybutyryl-CoA 83.2 7.4 0.00016 33.7 8.2 97 66-168 3-118 (288)
436 PRK08945 putative oxoacyl-(acy 83.1 11 0.00023 31.5 9.0 77 62-139 10-101 (247)
437 PLN02989 cinnamyl-alcohol dehy 83.0 18 0.0004 31.6 10.8 76 63-139 4-86 (325)
438 PRK07502 cyclohexadienyl dehyd 82.9 9.4 0.0002 33.4 8.8 90 64-164 6-97 (307)
439 PRK03659 glutathione-regulated 82.8 5.1 0.00011 38.8 7.6 92 65-168 401-499 (601)
440 PRK09072 short chain dehydroge 82.7 19 0.00041 30.3 10.5 74 63-140 4-90 (263)
441 cd05283 CAD1 Cinnamyl alcohol 82.7 14 0.0003 32.5 10.0 98 58-167 164-263 (337)
442 PRK06128 oxidoreductase; Provi 82.6 26 0.00056 30.3 11.5 102 63-166 54-190 (300)
443 PRK15057 UDP-glucose 6-dehydro 82.6 21 0.00046 32.5 11.1 100 66-170 2-120 (388)
444 cd08278 benzyl_alcohol_DH Benz 82.5 4.2 9.2E-05 36.4 6.6 96 58-167 181-285 (365)
445 PRK07533 enoyl-(acyl carrier p 82.4 23 0.0005 29.9 10.8 76 63-140 9-98 (258)
446 cd08279 Zn_ADH_class_III Class 82.3 5.3 0.00011 35.8 7.2 97 58-167 177-282 (363)
447 PRK05225 ketol-acid reductoiso 82.3 2.5 5.4E-05 39.1 4.9 90 63-166 35-130 (487)
448 PRK06035 3-hydroxyacyl-CoA deh 82.2 12 0.00027 32.3 9.2 93 65-164 4-118 (291)
449 PF02826 2-Hacid_dh_C: D-isome 81.4 1.7 3.7E-05 34.8 3.3 90 63-165 35-125 (178)
450 PTZ00075 Adenosylhomocysteinas 81.4 4 8.6E-05 38.0 6.0 89 62-168 252-342 (476)
451 PRK05808 3-hydroxybutyryl-CoA 81.1 17 0.00038 31.3 9.7 96 65-167 4-118 (282)
452 PRK11064 wecC UDP-N-acetyl-D-m 81.0 28 0.0006 32.0 11.4 94 65-169 4-121 (415)
453 PRK06125 short chain dehydroge 81.0 12 0.00027 31.4 8.7 76 63-139 6-90 (259)
454 TIGR02437 FadB fatty oxidation 80.8 15 0.00032 36.4 10.1 99 64-169 313-430 (714)
455 PRK08703 short chain dehydroge 80.8 14 0.00031 30.5 8.9 76 63-139 5-96 (239)
456 cd05281 TDH Threonine dehydrog 80.7 6.8 0.00015 34.6 7.2 96 61-167 161-262 (341)
457 COG1062 AdhC Zn-dependent alco 80.6 6.9 0.00015 34.7 6.8 105 53-169 175-287 (366)
458 PRK07454 short chain dehydroge 80.5 13 0.00028 30.8 8.5 76 63-140 5-93 (241)
459 PRK11154 fadJ multifunctional 80.3 17 0.00037 36.0 10.4 100 64-169 309-427 (708)
460 PRK11730 fadB multifunctional 80.1 17 0.00037 36.0 10.3 98 65-169 314-430 (715)
461 PRK07984 enoyl-(acyl carrier p 80.1 31 0.00067 29.3 10.9 74 63-140 5-94 (262)
462 PRK06522 2-dehydropantoate 2-r 79.9 14 0.0003 32.0 8.8 90 65-166 1-99 (304)
463 PRK07523 gluconate 5-dehydroge 79.8 12 0.00026 31.4 8.2 76 63-140 9-97 (255)
464 PRK10310 PTS system galactitol 79.8 4.4 9.5E-05 28.8 4.6 54 66-138 4-58 (94)
465 PF02558 ApbA: Ketopantoate re 79.7 23 0.0005 27.0 9.2 88 67-167 1-101 (151)
466 PRK10083 putative oxidoreducta 79.7 18 0.00039 31.8 9.6 100 57-167 154-259 (339)
467 PF04378 RsmJ: Ribosomal RNA s 79.7 3.6 7.8E-05 34.8 4.7 97 68-168 62-165 (245)
468 PRK05565 fabG 3-ketoacyl-(acyl 79.6 24 0.00053 29.1 10.0 75 64-140 5-93 (247)
469 PRK09291 short chain dehydroge 79.6 12 0.00026 31.3 8.1 73 65-139 3-82 (257)
470 TIGR02441 fa_ox_alpha_mit fatt 79.3 14 0.0003 36.8 9.3 98 65-169 336-452 (737)
471 cd08260 Zn_ADH6 Alcohol dehydr 79.2 18 0.0004 31.8 9.5 98 58-166 160-263 (345)
472 PRK07904 short chain dehydroge 79.0 12 0.00025 31.6 7.9 76 62-138 6-95 (253)
473 cd01065 NAD_bind_Shikimate_DH 79.0 24 0.00052 27.0 9.1 75 62-142 17-93 (155)
474 PRK15001 SAM-dependent 23S rib 78.9 21 0.00046 32.4 9.7 96 66-169 47-144 (378)
475 PRK06124 gluconate 5-dehydroge 78.8 14 0.00031 30.9 8.3 75 63-139 10-97 (256)
476 PRK07985 oxidoreductase; Provi 78.5 37 0.0008 29.4 11.0 101 63-166 48-184 (294)
477 PLN02353 probable UDP-glucose 78.5 25 0.00054 33.0 10.3 104 65-171 2-131 (473)
478 cd08297 CAD3 Cinnamyl alcohol 78.5 27 0.00058 30.7 10.3 98 59-167 161-265 (341)
479 TIGR00692 tdh L-threonine 3-de 78.3 36 0.00079 29.9 11.1 96 61-167 159-261 (340)
480 PRK08339 short chain dehydroge 78.2 15 0.00033 31.1 8.4 75 63-139 7-94 (263)
481 PRK03562 glutathione-regulated 78.2 15 0.00032 35.8 9.1 93 64-167 400-498 (621)
482 PRK05396 tdh L-threonine 3-deh 78.0 19 0.00042 31.6 9.3 96 62-168 162-264 (341)
483 PRK07102 short chain dehydroge 77.9 13 0.00029 30.8 7.9 73 65-138 2-84 (243)
484 cd05284 arabinose_DH_like D-ar 77.9 18 0.0004 31.7 9.1 97 61-167 165-266 (340)
485 cd08274 MDR9 Medium chain dehy 77.9 25 0.00054 31.0 10.0 95 57-166 171-272 (350)
486 PRK07890 short chain dehydroge 77.7 17 0.00036 30.5 8.4 75 63-140 4-92 (258)
487 cd05279 Zn_ADH1 Liver alcohol 77.7 35 0.00076 30.5 10.9 99 57-167 177-285 (365)
488 PRK05867 short chain dehydroge 77.6 15 0.00032 30.8 8.0 75 63-140 8-96 (253)
489 cd08243 quinone_oxidoreductase 77.5 26 0.00056 30.2 9.8 95 60-166 139-237 (320)
490 TIGR02818 adh_III_F_hyde S-(hy 77.3 11 0.00023 34.0 7.5 100 57-167 179-287 (368)
491 cd08266 Zn_ADH_like1 Alcohol d 77.3 9.6 0.00021 33.2 7.1 97 58-167 161-265 (342)
492 PRK06249 2-dehydropantoate 2-r 77.2 21 0.00045 31.4 9.1 92 63-166 4-105 (313)
493 PRK09548 PTS system ascorbate- 77.2 8.1 0.00018 37.0 6.7 62 60-140 502-564 (602)
494 PRK06949 short chain dehydroge 77.2 17 0.00037 30.4 8.3 75 63-139 8-95 (258)
495 PRK10669 putative cation:proto 77.2 9.6 0.00021 36.5 7.5 90 65-166 418-514 (558)
496 PRK06172 short chain dehydroge 77.1 17 0.00036 30.4 8.3 76 63-140 6-94 (253)
497 PRK06079 enoyl-(acyl carrier p 76.9 43 0.00093 28.1 11.0 74 63-140 6-93 (252)
498 PRK07326 short chain dehydroge 76.9 15 0.00032 30.3 7.8 73 63-138 5-90 (237)
499 PLN02702 L-idonate 5-dehydroge 76.6 54 0.0012 29.2 11.9 100 57-167 175-285 (364)
500 PRK06194 hypothetical protein; 76.6 15 0.00033 31.4 8.0 75 64-140 6-93 (287)
No 1
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-50 Score=340.38 Aligned_cols=268 Identities=32% Similarity=0.591 Sum_probs=242.2
Q ss_pred ccccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHH
Q 022864 3 IAIQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIA 82 (291)
Q Consensus 3 ~~~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la 82 (291)
...++.+++++|||++++||+.|+|++|.|||++|+.+..+++++|.++++.+++++.+.||++|||||||+|.+++++|
T Consensus 12 ~~~~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA 91 (283)
T COG2230 12 SKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAA 91 (283)
T ss_pred cccchhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHH
Confidence 44577889999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHHhcccc
Q 022864 83 QKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKE 159 (291)
Q Consensus 83 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~Lkp 159 (291)
+++ +++|+|+++|+++.+.++++++..|++ +++++..|+.++. ++||.|+|.++++|+. +.+.+|+++.++|+|
T Consensus 92 ~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 92 EEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred HHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 998 999999999999999999999999996 8999999999986 4599999999999994 599999999999999
Q ss_pred CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHH
Q 022864 160 DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLA 238 (291)
Q Consensus 160 gG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~ 238 (291)
||.+++++++....+.. ....|+.+|+||+|.+|+...+.. ..+....+..|...+.||.+|+..|.++|.++..
T Consensus 169 ~G~~llh~I~~~~~~~~----~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~ 244 (283)
T COG2230 169 GGRMLLHSITGPDQEFR----RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRD 244 (283)
T ss_pred CceEEEEEecCCCcccc----cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHH
Confidence 99999999988775542 468899999999999998887777 4454555666888899999999999999999999
Q ss_pred hHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEee
Q 022864 239 SIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRK 288 (291)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 288 (291)
++.+. ++ .++++.|..|+.+|+.+|+.|+ .++.||++.|
T Consensus 245 ~a~~~----~~----e~~~r~w~~yl~~~~~~Fr~~~---~~~~q~~~~k 283 (283)
T COG2230 245 EAIAL----YD----ERFYRMWELYLAACAAAFRAGY---IDVFQFTLTK 283 (283)
T ss_pred HHHHH----hh----HHHHHHHHHHHHHHHHHhccCC---ceEEEEEeeC
Confidence 98876 34 3789999999999999999988 5578887764
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=1.5e-50 Score=345.72 Aligned_cols=266 Identities=36% Similarity=0.675 Sum_probs=208.2
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022864 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 84 (291)
.+++++|++|||++++||+.+||++|+|||++|+++..+++++|.++++.+++++++++|.+|||||||+|.++..++++
T Consensus 4 ~~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 4 KQSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp ---HHHHHHHHTS-HHHHTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred chHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc--ccHHHHHHHHHhccccCe
Q 022864 85 YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG 161 (291)
+ +++|+|+++|+++.+.+++++++.|+ +++++..+|..+++ .+||.|+|..+++|+ ++...+++++.++|||||
T Consensus 84 ~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG 160 (273)
T PF02353_consen 84 Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGG 160 (273)
T ss_dssp H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTE
T ss_pred c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCc
Confidence 8 89999999999999999999999998 47999999999876 499999999999999 678999999999999999
Q ss_pred eEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHH-hhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhH
Q 022864 162 LLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-FQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASI 240 (291)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~ 240 (291)
+++++.++....+..........|+.+|+||++.+|+...+.. +......+..|.+.+.||.+|++.|+++|.++..++
T Consensus 161 ~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i 240 (273)
T PF02353_consen 161 RLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEI 240 (273)
T ss_dssp EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998887655433223345899999999999999887766 443333455678889999999999999999999988
Q ss_pred hhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE
Q 022864 241 KPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHF 284 (291)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 284 (291)
.++ |+ .+++|.|+.|+.+|+.+|+.|. +++.||
T Consensus 241 ~~~----~~----~~f~r~w~~yl~~~~~~F~~g~---~~~~Q~ 273 (273)
T PF02353_consen 241 IAL----FD----EEFYRMWRYYLAYCAAGFRAGS---IDVFQI 273 (273)
T ss_dssp HHH----SH----HHHHHHHHHHHHHHHHHHHTTS---CEEEEE
T ss_pred HHh----cC----HHHHHHHHHHHHHHHHHHHCCC---CeEEeC
Confidence 765 44 4789999999999999999988 557775
No 3
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=1.7e-41 Score=303.62 Aligned_cols=261 Identities=30% Similarity=0.653 Sum_probs=226.1
Q ss_pred cchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC
Q 022864 6 QTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY 85 (291)
Q Consensus 6 ~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~ 85 (291)
.++..+++|||++++||+.+++++|+|+|++|.. ..+++++|.++++.+++++...++.+|||||||+|.++..+++..
T Consensus 111 ~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~ 189 (383)
T PRK11705 111 RAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY 189 (383)
T ss_pred hHHHhhhhhcCCcHHHHHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC
Confidence 3567788999999999999999999999999974 478999999999999999999999999999999999999999876
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeE
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l 163 (291)
+++|+|+|+|+++++.+++++. ++ ++++...|+.++ +++||+|++..+++|+. ++..+++++.++|||||.+
T Consensus 190 -g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~l 263 (383)
T PRK11705 190 -GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLF 263 (383)
T ss_pred -CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEE
Confidence 7899999999999999998874 34 588888888775 36899999999999983 5678999999999999999
Q ss_pred EEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022864 164 FVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~ 243 (291)
++++++..... .....|+.+|+||++.+|+...+....+....+..|...+.||.+|+..|.++|.++..++.+
T Consensus 264 vl~~i~~~~~~-----~~~~~~i~~yifp~g~lps~~~i~~~~~~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~- 337 (383)
T PRK11705 264 LLHTIGSNKTD-----TNVDPWINKYIFPNGCLPSVRQIAQASEGLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD- 337 (383)
T ss_pred EEEEccCCCCC-----CCCCCCceeeecCCCcCCCHHHHHHHHHCCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 99887655432 124679999999999999877777665554556677888999999999999999999887754
Q ss_pred HHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 244 MESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
.|++ .+++.|+.|+.+|+.+|+.|. +++.|+++.||
T Consensus 338 ---~~~~----~~~r~w~~yl~~~~~~F~~~~---~~~~q~~~~~~ 373 (383)
T PRK11705 338 ---NYSE----RFYRMWRYYLLSCAGAFRARD---IQLWQVVFSPR 373 (383)
T ss_pred ---hCCH----HHHHHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence 4664 689999999999999999988 67999999995
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.95 E-value=1.7e-25 Score=198.36 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=146.8
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEEcCCcchHHH
Q 022864 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDA--SKTLEDAEKAMLELYCERSRL-----EDGHTVLDVGCGWGSLSL 79 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~ 79 (291)
....+..|||..+++|+.++++.++. ++|+.+ ..+..+++.++++.+++.+.. .++.+|||||||+|.++.
T Consensus 57 ~~~~i~~~Yd~~~~~~e~~~g~~~h~--g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~ 134 (340)
T PLN02244 57 LKEGIAEFYDESSGVWEDVWGEHMHH--GYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSR 134 (340)
T ss_pred HHHHHHHHHccchHHHHHHhCCccee--eccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHH
Confidence 45678899999999999999988765 888764 578999999999999998877 678899999999999999
Q ss_pred HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhcc
Q 022864 80 YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 80 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L 157 (291)
.+++++ +++|+|+|+|+.+++.++++++..++ +++.++.+|+.+++++ ++||+|++..+++|+++...+++++.++|
T Consensus 135 ~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvL 213 (340)
T PLN02244 135 YLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVA 213 (340)
T ss_pred HHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHc
Confidence 999887 78999999999999999999888877 4799999999998766 89999999999999999999999999999
Q ss_pred ccCeeEEEEeeccCC
Q 022864 158 KEDTLLFVHHFCHKT 172 (291)
Q Consensus 158 kpgG~l~~~~~~~~~ 172 (291)
||||.+++.++.+..
T Consensus 214 kpGG~lvi~~~~~~~ 228 (340)
T PLN02244 214 APGGRIIIVTWCHRD 228 (340)
T ss_pred CCCcEEEEEEecccc
Confidence 999999998876644
No 5
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.91 E-value=4.4e-25 Score=175.51 Aligned_cols=213 Identities=20% Similarity=0.275 Sum_probs=158.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+-...++..+...+..+|.|||||+|..+..|++++|++.++|+|.|++|++.|+++ +++++|..+|+..+.+++
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~~ 91 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPEQ 91 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCCC
Confidence 335567778888889999999999999999999999999999999999999888654 358999999999998888
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCccccccc---CCccchhhhhcc---CCCCCCcHHHHH
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFED---TNDDDWITKYFF---TGGTMPSANLLL 203 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---~~~~~w~~~~~~---~~~~~~~~~~~~ 203 (291)
+.|+++++.+|+++++...+|.++...|.|||+|.++.|.....+++... .....|-...-- ....+++....-
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999998887776533 122245443211 123455544444
Q ss_pred Hh-hcCcEEEEeeecCCCcH---HHHHHHHHHH---------HHh-----cHHhHhhhHHhccC-cchhHHHHHHHHHHH
Q 022864 204 YF-QDDVSVVDHWLVNGKHY---AQTSEEWLKR---------MDN-----NLASIKPIMESTYG-KDQAVKWTVYWRTFF 264 (291)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~y---~~tl~~w~~~---------l~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 264 (291)
.. .....-++.|.+.+.|- +..+-+|.+. |.+ -...+.+++.+.|+ +.+|++.|++.|.|+
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFi 251 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFI 251 (257)
T ss_pred HHhCcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEE
Confidence 33 34445678898877664 3456666652 211 12335555666666 556667777777666
Q ss_pred HHH
Q 022864 265 IAV 267 (291)
Q Consensus 265 ~~~ 267 (291)
+|.
T Consensus 252 VA~ 254 (257)
T COG4106 252 VAT 254 (257)
T ss_pred EEe
Confidence 543
No 6
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.90 E-value=1.7e-22 Score=169.55 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=148.8
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
.+|||||||+|..+..+++.+|+.+|+|+|+|+++++.+++++...++ +++.++.+|+...+.+++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999999988788999999999999999999988877 4789999999776555789999999999999
Q ss_pred ccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHH-HHh-hcCcEEEEeeecCCCc
Q 022864 144 KNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLL-LYF-QDDVSVVDHWLVNGKH 221 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 221 (291)
++...+++++.++|||||.+++.++....... ....+... ..++.... ..+ ..++.+++. ...+.+
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~------~~~s~~~~~~~l~~~Gf~~~~~-~~~~~~ 148 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSA-----IEHEETTS------YLVTREEWAELLARNNLRVVEG-VDASLE 148 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCcc-----cccccccc------ccCCHHHHHHHHHHCCCeEEEe-EECcHh
Confidence 99999999999999999999998775432110 01111111 12333322 222 345666554 344677
Q ss_pred HHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeecC
Q 022864 222 YAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKKM 290 (291)
Q Consensus 222 y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 290 (291)
|.+++ |...|.++..++... .++ ..+.+.|. |+..++++|+.|. ++.+|++++|+.
T Consensus 149 ~~~~l--~~~~f~~~~~~~~~~---~~~----~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~k~~ 204 (224)
T smart00828 149 IANFL--YDPGFEDNLERLYQD---DLD----EVTKRHFR-GIANLGKLLEKGL---ASYALLIVQKDE 204 (224)
T ss_pred Hhhhc--cChhHHHHHHHhccc---cch----HHHHHHHh-hHHHHHHHHHhch---HhhEEEEEeccc
Confidence 87765 788887777666553 233 24667775 4456666698877 789999999985
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.87 E-value=1.9e-21 Score=161.43 Aligned_cols=122 Identities=23% Similarity=0.352 Sum_probs=110.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
-+.+++.+...+|.+|||+|||||..+..+++..+..+|+|+|+|+.|++.+++++.+.+..+++|+++|++.+|++ .+
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~s 119 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNS 119 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCc
Confidence 34555666666899999999999999999999987789999999999999999999988876699999999999998 99
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
||+|.+...+.++++.+++|+++.|+|||||++++..+..+..
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 9999999999999999999999999999999999988776543
No 8
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.87 E-value=8.7e-20 Score=169.55 Aligned_cols=217 Identities=20% Similarity=0.292 Sum_probs=152.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
...+++.+...++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.|++++.... .++.+..+|+...+.+ ++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCC
Confidence 4556666667788999999999999999999876 7899999999999999988765333 3799999999887755 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhhccC-CCCCCcHHHHHHh--hc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFT-GGTMPSANLLLYF--QD 207 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~--~~ 207 (291)
||+|+|..+++|++++..+++++.++|||||.+++.++....... .. ....++.. +..+++......+ ..
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~-~~~~~~~~~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTP------SP-EFAEYIKQRGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC------cH-HHHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999998876543221 11 11122212 2234444434333 24
Q ss_pred CcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhccCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEe
Q 022864 208 DVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMESTYGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFR 287 (291)
Q Consensus 208 ~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 287 (291)
++..+. ....+.+|.+++..|...+.++..++.. .++++........| ....+.+..++ .+-+-|+.|
T Consensus 406 GF~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~----~~~~~~~~~~~---~~wg~~~a~ 473 (475)
T PLN02336 406 GFDDVI-AEDRTDQFLQVLQRELDAVEKEKDEFIS----DFSEEDYNDIVGGW----KAKLVRSSSGE---QKWGLFIAK 473 (475)
T ss_pred CCeeee-eecchHHHHHHHHHHHHHHHhCHHHHHH----hcCHHHHHHHHHhH----HHHHhhhcCCc---eeeEEEEEe
Confidence 555553 3344567999999999998887776654 35654444444444 33344444443 334455566
Q ss_pred ec
Q 022864 288 KK 289 (291)
Q Consensus 288 ~~ 289 (291)
|.
T Consensus 474 k~ 475 (475)
T PLN02336 474 KK 475 (475)
T ss_pred cC
Confidence 63
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.86 E-value=1.5e-19 Score=154.90 Aligned_cols=244 Identities=17% Similarity=0.243 Sum_probs=156.4
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022864 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~ 92 (291)
+|-+.+...|+..+++..... ..+ .....+++.+.+.++.+|||||||+|..+..+++.+ +++|+|
T Consensus 15 ~y~~~~~~~~e~~~g~~~~~~--------gg~-----~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~g 80 (263)
T PTZ00098 15 QYSDEGIKAYEFIFGEDYISS--------GGI-----EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHG 80 (263)
T ss_pred ccccccchhHHHHhCCCCCCC--------Cch-----HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEE
Confidence 455555667776666532221 112 224567777888899999999999999999998765 789999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+|+.+++.++++... .+++.++.+|+.+.+.+ ++||+|++..+++|++ +...+++++.++|||||.+++.++.
T Consensus 81 iD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 81 VDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999887653 24799999999887665 7899999999888885 7889999999999999999998875
Q ss_pred cCCcccccccCCccchhhhhccCCCCCCcHHHHHH-h-hcCcEEEEeeecCCCcHHHHHHHHHHHHHhcHHhHhhhHHhc
Q 022864 170 HKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLY-F-QDDVSVVDHWLVNGKHYAQTSEEWLKRMDNNLASIKPIMEST 247 (291)
Q Consensus 170 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~y~~tl~~w~~~l~~~~~~~~~~~~~~ 247 (291)
......... ....++... ...+++...... + ..++..++... ....+.+.+..-++.+.++..++.+ .
T Consensus 159 ~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~l~~aGF~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~----~ 228 (263)
T PTZ00098 159 ADKIENWDE--EFKAYIKKR---KYTLIPIQEYGDLIKSCNFQNVVAKD-ISDYWLELLQVELKKLEEKKEEFLK----L 228 (263)
T ss_pred cccccCcHH--HHHHHHHhc---CCCCCCHHHHHHHHHHCCCCeeeEEe-CcHHHHHHHHHHHHHHHHhHHHHHH----h
Confidence 543211000 000111111 112233333333 3 24566555332 2334445555555555555555443 4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEeec
Q 022864 248 YGKDQAVKWTVYWRTFFIAVAELFGYNNGEEWMVTHFLFRKK 289 (291)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 289 (291)
++++..+.+...|...+.++. .|+ ..||+- .++||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~----~~~-~~wg~~--~~~~~ 263 (263)
T PTZ00098 229 YSEKEYNSLKDGWTRKIKDTK----RKL-QKWGYF--KAQKM 263 (263)
T ss_pred cCHHHHHHHHHHHHHHHHHhh----ccc-cccceE--eecCC
Confidence 676555566666655444443 344 336664 36663
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=2.5e-21 Score=162.22 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=91.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCcc
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYD 132 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D 132 (291)
+++.+...++.+|||+|||+|..+..+++.. |..+|+|+|+|+.|++.++++....+..+++++++|+++++++ ++||
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence 3444566788999999999999999998874 5679999999999999999999988877999999999999887 8999
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
+|++...++.++|..+.++++.|+|||||++++.+++.+..
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN 159 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence 99999999999999999999999999999999988877643
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.85 E-value=3.1e-21 Score=157.43 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=102.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.++.+|||+|||.|.++..+|+. |++|+|+|+++.+++.|+..+.+.++ ++++.+..++++... ++||+|+|..++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence 47899999999999999999988 89999999999999999999999988 688999999998766 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
+|++++..+++.+.+.+||||.+++++++....+
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 9999999999999999999999999999865443
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.84 E-value=3.7e-20 Score=138.26 Aligned_cols=105 Identities=21% Similarity=0.398 Sum_probs=90.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc-cCCccCCCccEEEEcc-c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI-STFEMEASYDRIYSIE-M 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~-~~~~~~~~~D~i~~~~-~ 139 (291)
|+.+|||||||+|.++..+++++++.+|+|+|+|+.+++.+++++...+. ++++++++|+ .......+||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 57899999999999999999977799999999999999999999966555 6899999999 4444447899999999 4
Q ss_pred cccc---ccHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHM---KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++++ ++..++++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4433 456889999999999999999875
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=2.1e-19 Score=153.87 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=116.1
Q ss_pred chhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-
Q 022864 7 TDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY- 85 (291)
Q Consensus 7 ~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~- 85 (291)
.++.++.+||.-...|....+. +.. ..+....+ .+++.+...++.+|||+|||+|.++..++++.
T Consensus 31 ~~~~v~~~f~~~A~~YD~~~~~-~s~----------g~~~~~r~---~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~ 96 (261)
T PLN02233 31 CANERQALFNRIAPVYDNLNDL-LSL----------GQHRIWKR---MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVG 96 (261)
T ss_pred hHHHHHHHHHHhhhHHHHhhhh-hcC----------ChhHHHHH---HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhC
Confidence 4455777787777777643211 111 01111122 23344566788999999999999999998874
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHH---hCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCe
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRV---LELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG 161 (291)
+..+|+|+|+|++|++.|+++... ...+++.++++|+++++.+ ++||+|+++.++++++++..+++++.++|||||
T Consensus 97 ~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG 176 (261)
T PLN02233 97 SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGS 176 (261)
T ss_pred CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCc
Confidence 457999999999999999877542 2235799999999998877 789999999999999999999999999999999
Q ss_pred eEEEEeeccCC
Q 022864 162 LLFVHHFCHKT 172 (291)
Q Consensus 162 ~l~~~~~~~~~ 172 (291)
.+++.++..+.
T Consensus 177 ~l~i~d~~~~~ 187 (261)
T PLN02233 177 RVSILDFNKST 187 (261)
T ss_pred EEEEEECCCCC
Confidence 99998876543
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.82 E-value=1.8e-19 Score=142.16 Aligned_cols=108 Identities=28% Similarity=0.496 Sum_probs=98.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQ-KYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~ 138 (291)
+.+.+|||+|||+|.++..+++ ..|+.+++|+|+|+++++.++++++..+.++++++++|+.+++ .+++||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 4678999999999999999999999999989999999999976 337999999999
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++++.+...+++++.+.|++||.+++..+.
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998775
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.81 E-value=3.9e-19 Score=152.04 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+....+++.+...++.+|||+|||+|.++..+++++|+.+|+|+|+|+.|++.+++. +++++++|+.++...+
T Consensus 16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~ 88 (255)
T PRK14103 16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKP 88 (255)
T ss_pred CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCC
Confidence 345667777777888999999999999999999988889999999999999888652 5789999998875448
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+|+.+++|++++..+++++.++|||||.+++..++.
T Consensus 89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 89999999999999999999999999999999999986653
No 16
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.80 E-value=4.3e-18 Score=145.91 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
......++..+...++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. +++.++.+|+..+...
T Consensus 17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~ 91 (258)
T PRK01683 17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPP 91 (258)
T ss_pred hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCC
Confidence 33456677777778889999999999999999999888899999999999999887653 4688999999887655
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+||+|+++.+++++++...+++++.++|||||.+++..+..
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 799999999999999999999999999999999999976543
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.80 E-value=2.4e-18 Score=145.11 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=104.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
..+++.+...++.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.++++....+.++++++.+|+.+.+.+ ++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 456667777889999999999999999999875 5679999999999999999998877777899999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..+++++++..++++++.++|+|||.+++.+...
T Consensus 115 fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999999999999999999999999999999876644
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=1.4e-18 Score=142.76 Aligned_cols=111 Identities=21% Similarity=0.332 Sum_probs=95.7
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.+++++...++.++++...|+.+.+.+.+||+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I 99 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFI 99 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEE
Confidence 344445566789999999999999999986 789999999999999999999888887799999999887666789999
Q ss_pred EEcccccccc--cHHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+++.++++++ +...+++++.++|||||++++..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998874 57889999999999999965533
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=1.3e-18 Score=148.77 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--c
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--M 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~ 127 (291)
.+..+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|+++++.|++++...++ ++++++++|+.++. .
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc
Confidence 4556666665 45679999999999999999987 78999999999999999999988876 57999999998764 2
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+++||+|++..+++|+.++..+++++.++|||||++++..++..
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 37899999999999999999999999999999999998776543
No 20
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.79 E-value=8.4e-18 Score=136.20 Aligned_cols=115 Identities=22% Similarity=0.270 Sum_probs=97.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.++.+.-.-..+++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.++++++..++++++++.+|+.+....++
T Consensus 33 ~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~ 112 (187)
T PRK00107 33 ILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEK 112 (187)
T ss_pred HHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCC
Confidence 33444332234458899999999999999999888889999999999999999999999998779999999998765578
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|+++. +.++..+++.+.+.|||||++++....
T Consensus 113 fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 113 FDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999975 356788999999999999999987543
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.78 E-value=1.8e-18 Score=151.16 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=96.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
.++.+|||||||+|.++..+++. +.+|+|+|+++++++.+++++...+. .++.++++|+++++.. ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 35779999999999999999864 78999999999999999988765544 4799999999987655 78999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++|+.++..+++.+.++|||||.+++.+++..
T Consensus 208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999999999999999999999999987653
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=1.3e-18 Score=125.58 Aligned_cols=94 Identities=23% Similarity=0.421 Sum_probs=82.7
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccH
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNY 146 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~ 146 (291)
||+|||+|..+..++++ ++.+|+++|+++.+++.++++.... ++.+..+|+.+++++ ++||+|++..+++|+++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999988 6899999999999999988876543 566999999999877 999999999999999999
Q ss_pred HHHHHHHHhccccCeeEEE
Q 022864 147 QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 147 ~~~l~~~~~~LkpgG~l~~ 165 (291)
..+++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999975
No 23
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.77 E-value=7.2e-19 Score=144.52 Aligned_cols=107 Identities=28% Similarity=0.457 Sum_probs=92.5
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-C-----CeEEEEccccCCccCCCccEEEEc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-Q-----NVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-----~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
|++|||+|||+|.++..|++. +++|+|+|+++.+++.|++....... . ++.+.+.|+++.. ++||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeH
Confidence 488999999999999999987 89999999999999999998544433 1 2567777777765 569999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
.+++|+.|+..+++.+.+.|||||.+++++.++....
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS 202 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILS 202 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHH
Confidence 9999999999999999999999999999998775443
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.77 E-value=8.4e-18 Score=137.89 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=92.8
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...++ ++.+...|+...+.+.+||+|
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEE
Confidence 333444555679999999999999999986 78999999999999999998888877 488888888765555789999
Q ss_pred EEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+++.+++++ .+...+++.+.++|||||++++...
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 999999988 4567899999999999999666443
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.76 E-value=4.7e-17 Score=130.59 Aligned_cols=129 Identities=23% Similarity=0.371 Sum_probs=104.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC
Q 022864 34 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 113 (291)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 113 (291)
.|.|+ ...++....-+++.+... ++.+|||+|||+|.++..++++.|..+|+++|+++.+++.+++++..++++
T Consensus 8 ~gvFs--~~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 8 PGVFS--PPRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE 81 (170)
T ss_dssp TTSTT--TTSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT
T ss_pred CCeeC--CCCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 36665 345666666555555443 677999999999999999999988888999999999999999999999986
Q ss_pred CeEEEEccccCCccCCCccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022864 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 114 ~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+++++..|+.+...+++||+|+|+.+++.-.+ ...+++...+.|||||.+++...
T Consensus 82 ~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 82 NVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 69999999988655589999999999876643 57899999999999999987544
No 26
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.76 E-value=2.6e-17 Score=133.01 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=89.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++.+|||+|||+|..+..++...|+.+|+++|+|+.+++.+++++++.++++++++++|+.++...++||+|+++. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L-- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h--
Confidence 4789999999999999999888778899999999999999999998888878999999999875458999999976 3
Q ss_pred cccHHHHHHHHHhccccCeeEEEEe
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+...+++.+.+.|+|||.+++..
T Consensus 119 -~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 -ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 456678888999999999998753
No 27
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.76 E-value=1.3e-17 Score=142.40 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
.|....+.+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++.. .+.++++|++.++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~ 98 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLP 98 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCc
Confidence 44556667777776666789999999999999998865 7899999999999988876532 3568899999877
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
.+ ++||+|+++.++++.+++..++.++.++|+|||.+++.+++....
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 66 789999999999999999999999999999999999998876543
No 28
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.75 E-value=3.5e-17 Score=131.81 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
+++.+...++.++||+|||.|..+.+|+++ |..|+++|.|+..++.+++.+...++ +|+....|+.+...++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEE
Confidence 344445556779999999999999999998 99999999999999999999988888 599999999998877889999
Q ss_pred EEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++..+++++ +..+.+++++.+.++|||++++.+..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 998888888 45678999999999999998886653
No 29
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.74 E-value=1.3e-16 Score=121.01 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=95.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-c-CC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-M-EA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~ 129 (291)
...+++.+...++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.++++++..+.+++.++.+|+.... . ..
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 344566667777889999999999999999998877899999999999999999998887778999999877532 1 26
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|++..... ...++++.+.+.|||||.+++...
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 899999977553 446899999999999999988653
No 30
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.74 E-value=7e-17 Score=140.62 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~ 128 (291)
-+...++..+...++.+|||+|||+|.++..++..+ ...|+|+|+|+.++..++...+..+ ..++.+..+++++++..
T Consensus 108 ~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 108 IKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 345667777777788999999999999999988774 3479999999999876543322222 23688889999888765
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.+||+|+|..+++|++++..++++++++|||||.|++.+...
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 789999999999999999999999999999999999987643
No 31
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.74 E-value=4.9e-17 Score=132.99 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=106.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC------CEEEEEcCCHHHHHHHHHHHHHhCC-C--CeEEEEcccc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN------CKITGICNSKTQKEFIEEQCRVLEL-Q--NVEIIVADIS 123 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~-~--~v~~~~~d~~ 123 (291)
+..+.++...+++++||++||||..+..+.+..+. .+|+++|+||.|++.+++++.+.++ + ++.|+++|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 34456777788999999999999999999887644 7999999999999999999988777 2 4899999999
Q ss_pred CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 124 ~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+++++ ..||...+...+..+.+.++.+++++|+|||||++.+-.+....
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 99998 89999999999999999999999999999999999887776544
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.73 E-value=8.3e-17 Score=141.53 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~ 129 (291)
+.+.++..+...++.+|||||||+|.++..++..+ ...|+|+|+|+.++..++...+..+. .++.++.+|+++++.++
T Consensus 110 k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 110 KWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred HHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 34555666665678899999999999999999875 34699999999998765543333222 37999999999987668
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+||+|+|..+++|+.++..+++++++.|+|||.+++.+...
T Consensus 189 ~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred CcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 89999999999999999999999999999999999976543
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.73 E-value=9.6e-17 Score=136.53 Aligned_cols=108 Identities=23% Similarity=0.348 Sum_probs=93.7
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH--CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQK--YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
..++.+|||+|||+|..+..+++. .|+.+|+|+|+|+.|++.+++++...+. .+++++++|+.+.+. ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 356789999999999999988874 4789999999999999999999987766 379999999998765 458999999
Q ss_pred ccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++++++ +...+++++.+.|||||.+++.+..
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 9999985 3467999999999999999998743
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.72 E-value=1.8e-18 Score=126.23 Aligned_cols=96 Identities=24% Similarity=0.416 Sum_probs=67.6
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---ccCCCccEEEEcccccccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---EMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~i~~~~~l~~~~ 144 (291)
||||||+|.++..+.+.+|..+++|+|+|+.+++.++++....+..+......+..+. ...++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999988999999999999999888888877654444444443332 2225999999999999999
Q ss_pred cHHHHHHHHHhccccCeeE
Q 022864 145 NYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l 163 (291)
+...+++++.++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.71 E-value=1.2e-16 Score=135.09 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHcCC---CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022864 47 AEKAMLELYCERSRL---EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 123 (291)
.|......+++.+.. ..+.+|||+|||+|.++..+++.++..+++++|+++.+++.++++.. +++.++.+|+.
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~ 90 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchh
Confidence 344444445444432 34579999999999999999998888899999999999988876543 37889999999
Q ss_pred CCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 124 TFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 124 ~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+.+.+ ++||+|+++.++++..++..+++.+.+.|+|||.+++.++....
T Consensus 91 ~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 91 KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred hCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88755 78999999999999999999999999999999999998775543
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.71 E-value=1.8e-16 Score=136.94 Aligned_cols=110 Identities=21% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~ 137 (291)
...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++....++++++++.+|+++++.+ +.||+|+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 45688999999999999888777653 4568999999999999999998888887899999999987765 789999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++++.++...+++++.++|||||++++....
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 99999999999999999999999999997654
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.71 E-value=1.1e-16 Score=140.54 Aligned_cols=114 Identities=21% Similarity=0.143 Sum_probs=96.9
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
...+++.+.. .++.+|||+|||+|.++..+++..++.+|+++|+|+++++.++++.. ..+++++.+|+++.+.+ +
T Consensus 101 r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 101 RDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCC
Confidence 3345554443 46789999999999999999888777899999999999999988654 23688999999988765 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|+++.+++++++...+++++.++|||||.+++..+
T Consensus 178 sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred ceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 899999999999999999999999999999999988654
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=6.6e-16 Score=134.22 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++..++ ++.+...|+.....+++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhh
Confidence 4559999999999999999986 78999999999999999999988888 79999999887655688999999999998
Q ss_pred cc--cHHHHHHHHHhccccCeeEEEEee
Q 022864 143 MK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 143 ~~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++ +...+++++.++|+|||++++...
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 84 678899999999999999776443
No 39
>PRK08317 hypothetical protein; Provisional
Probab=99.70 E-value=4.5e-16 Score=131.60 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=100.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
+.+++.+...++.+|||+|||+|.++..+++.+ |..+++|+|+|+.+++.++++... ...++.+..+|+...+.. ++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCC
Confidence 445666778889999999999999999999886 678999999999999999887322 224799999999887655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||+|++..+++++.++..+++++.++|||||.+++..+..
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 9999999999999999999999999999999999987653
No 40
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.70 E-value=7.5e-16 Score=130.32 Aligned_cols=152 Identities=17% Similarity=0.285 Sum_probs=115.9
Q ss_pred ccchhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH
Q 022864 5 IQTDKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK 84 (291)
Q Consensus 5 ~~~~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~ 84 (291)
.+.++.+..+|+....-|..+. ....+ +. .......++..+...++.+|||+|||+|.++..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~ 72 (239)
T PRK00216 7 EEKQEKVAEMFDSIAPKYDLMN-DLLSF--GL-----------HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKA 72 (239)
T ss_pred ccchHHHHHHHHHhhhhHHHHH-HHHhc--CC-----------cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHH
Confidence 3455566777777666665321 10111 00 0122334455555667889999999999999999988
Q ss_pred CC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCe
Q 022864 85 YS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT 161 (291)
Q Consensus 85 ~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG 161 (291)
.+ ..+++++|+++.+++.+++++...+. .++.++.+|+.+.+.+ +.||+|++..+++++.+...+++++.+.|+|||
T Consensus 73 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 73 VGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG 152 (239)
T ss_pred cCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCc
Confidence 75 58999999999999999998876544 4689999999887655 789999999999999999999999999999999
Q ss_pred eEEEEeecc
Q 022864 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~~~~~~~ 170 (291)
.+++.....
T Consensus 153 ~li~~~~~~ 161 (239)
T PRK00216 153 RLVILEFSK 161 (239)
T ss_pred EEEEEEecC
Confidence 998876644
No 41
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.70 E-value=1e-16 Score=127.27 Aligned_cols=99 Identities=28% Similarity=0.424 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 139 (291)
..++.+|||+|||.|.++..+++. +.+++|+|+++.+++. .++.....+..... .+++||+|+|+.+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 567889999999999999999766 6699999999998776 13444444444433 2389999999999
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++|++++..+++.+.++|||||++++.++...
T Consensus 88 l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 88 LEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99999999999999999999999999998653
No 42
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.70 E-value=6.7e-17 Score=118.40 Aligned_cols=94 Identities=19% Similarity=0.430 Sum_probs=79.6
Q ss_pred EEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc-cccc
Q 022864 67 VLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI-EMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~-~~l~ 141 (291)
|||+|||+|..+..++..+ |..+++|+|+|+++++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999885 347999999999999999999988777 899999999998755 799999995 4588
Q ss_pred ccc--cHHHHHHHHHhccccCe
Q 022864 142 HMK--NYQNLLKKISKWMKEDT 161 (291)
Q Consensus 142 ~~~--~~~~~l~~~~~~LkpgG 161 (291)
|+. +...+++++.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 884 57889999999999998
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.70 E-value=2.6e-16 Score=134.79 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=107.4
Q ss_pred HHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCEE
Q 022864 20 SFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCKI 90 (291)
Q Consensus 20 ~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~-----~~~v 90 (291)
+..+.+++.-. ....+|-.....++......+..+++.....++.+|||+|||+|. +++.+++..+ +.+|
T Consensus 57 ~e~~~l~~~lt-i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I 135 (264)
T smart00138 57 EELAELLDLMT-TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKI 135 (264)
T ss_pred HHHHHHHHHhh-cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEE
Confidence 44555544322 222444445566777666666666655444567899999999996 5666666543 4689
Q ss_pred EEEcCCHHHHHHHHHHHH----HhC----------------------C-CCeEEEEccccCCccC-CCccEEEEcccccc
Q 022864 91 TGICNSKTQKEFIEEQCR----VLE----------------------L-QNVEIIVADISTFEME-ASYDRIYSIEMFEH 142 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~----~~~----------------------~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~ 142 (291)
+|+|+|+.+++.|++..- ..+ + ++|.|.++|+.+.+++ ++||+|+|.++++|
T Consensus 136 ~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~y 215 (264)
T smart00138 136 LATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIY 215 (264)
T ss_pred EEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHh
Confidence 999999999999987431 001 1 3689999999997664 89999999999999
Q ss_pred cc--cHHHHHHHHHhccccCeeEEEEe
Q 022864 143 MK--NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~~--~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++ +..++++++.+.|+|||++++..
T Consensus 216 f~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 216 FDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 95 45689999999999999999853
No 44
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.70 E-value=3.1e-16 Score=132.88 Aligned_cols=108 Identities=23% Similarity=0.307 Sum_probs=93.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
.++.+|||+|||+|..+..+++.+ |+++++|+|+|+.|++.|+++++..+. .+++++++|+.+.+.+ .+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 467899999999999999999864 688999999999999999999877654 4789999999987654 689999999
Q ss_pred cccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 139 MFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++++++ +...+++++.+.|||||.+++.++..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999984 46789999999999999999987543
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.70 E-value=1e-15 Score=124.87 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=94.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+++.+...++.+|||+|||+|.++..+++.+|+.+|+++|+|+.+++.+++++...++++++++.+|... ..+.+||
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D 99 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKAD 99 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCC
Confidence 344566677788999999999999999999888888999999999999999999988877779999998753 2346899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|++..... ....+++.+.+.|+|||++++....
T Consensus 100 ~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 100 AIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 999987653 4567899999999999999886543
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.68 E-value=3.9e-16 Score=128.68 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc-cCCc--cC-CCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI-STFE--ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~--~~-~~~D~i~~~~ 138 (291)
++.+|||+|||+|..+..+++..|+.+|+|+|+|+.+++.+++++...+++++.++++|+ ..++ .+ ++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 678999999999999999998888889999999999999999999888877899999999 6554 33 7899999976
Q ss_pred cccccc--------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 139 MFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 139 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+.. ....+++++.++|||||.+++.+...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 554322 14679999999999999999976543
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.68 E-value=7.4e-16 Score=137.12 Aligned_cols=127 Identities=13% Similarity=0.185 Sum_probs=101.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--
Q 022864 35 CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-- 112 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-- 112 (291)
|.|+.. .++...+ .+++.++...+.+|||+|||+|.++..+++++|..+|+++|.|+.+++.++++++.++.
T Consensus 206 gVFs~~--~LD~Gtr----llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~ 279 (378)
T PRK15001 206 NVFSRT--GLDIGAR----FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA 279 (378)
T ss_pred CccCCC--CcChHHH----HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc
Confidence 777743 4554433 34455555555699999999999999999999999999999999999999999987764
Q ss_pred -CCeEEEEccccCCccCCCccEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEe
Q 022864 113 -QNVEIIVADISTFEMEASYDRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 -~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++++...|..+...+.+||+|+|+.+++... ...++++.+.++|+|||.+++..
T Consensus 280 ~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 280 LDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 36889988886643336899999999987542 24578999999999999999874
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.67 E-value=1.2e-15 Score=127.15 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=93.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+...+++.+...++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.+++++...+++++.++.+|..+....
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3456667777888999999999999999999998753 457999999999999999999999888899999999875433
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+||+|++.....++ .+.+.+.|+|||++++...
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEEc
Confidence 789999998766544 3457888999999988653
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=2.9e-15 Score=123.84 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~ 128 (291)
+...+++.+...++.+|||+|||+|..+..+++..+ +.+|+++|+++++++.+++++...++. +++++.+|..+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 455667777778889999999999999999988753 469999999999999999999888874 599999999875433
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+||+|++..++.+++ +.+.+.|+|||++++...
T Consensus 140 ~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 7899999998887654 467889999999988543
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.66 E-value=2.5e-15 Score=125.71 Aligned_cols=115 Identities=24% Similarity=0.353 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-AS 130 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 130 (291)
..+++.+...++.+|||+|||+|..+..+++..+. .+++++|+++.+++.++++.. ...++.++.+|+.+.+.+ ++
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCc
Confidence 34445555567899999999999999999988754 699999999999999988765 224789999999987655 78
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
||+|++..+++++.+...+++.+.+.|+|||++++....
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999999999999999999999999999987664
No 51
>PRK06922 hypothetical protein; Provisional
Probab=99.66 E-value=7.6e-16 Score=143.18 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=93.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~ 136 (291)
+..++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.++++....+. ++.++++|+.+++ ++ ++||+|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEE
Confidence 34467899999999999999999888899999999999999999988765554 6888999998865 33 78999999
Q ss_pred ccccccc-------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 137 IEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 137 ~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+.++|++ .+..++++++.++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9988864 25678999999999999999997643
No 52
>PRK05785 hypothetical protein; Provisional
Probab=99.65 E-value=3.4e-15 Score=125.08 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.+++. ..++++|+++++.+ ++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhh
Confidence 46799999999999999999876 67999999999999988753 23578999998876 8999999999999
Q ss_pred ccccHHHHHHHHHhccccC
Q 022864 142 HMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~Lkpg 160 (291)
+++++.++++++.++|||.
T Consensus 122 ~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccCCHHHHHHHHHHHhcCc
Confidence 9999999999999999994
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.65 E-value=5.2e-15 Score=124.60 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=103.7
Q ss_pred CCccccchhHHHhhcCCC-hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcch
Q 022864 1 MPIAIQTDKAKEQHYELP-TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGS 76 (291)
Q Consensus 1 ~~~~~~~~~~~~~~yd~~-~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~ 76 (291)
|-..++....++.+||.. .+.|....+.. ....-...+..........++..+ ...++.+|||+|||+|.
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~w~~~y~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~ 76 (230)
T PRK07580 3 MFNYLEHKSEVRTYFNRTGFDRWARIYSDA------PVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGS 76 (230)
T ss_pred chhhhhchhhhhHHHhhhccchHHHhhCcC------chhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH
Confidence 344566777888888854 24444433321 111101111112233333444333 24567899999999999
Q ss_pred HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccccc--cHHHHHHHH
Q 022864 77 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKI 153 (291)
Q Consensus 77 ~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~ 153 (291)
++..+++. +.+|+|+|+|+.+++.++++....+. +++.+..+|+... .++||+|++..+++|++ +...+++.+
T Consensus 77 ~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l 152 (230)
T PRK07580 77 LSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHL 152 (230)
T ss_pred HHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHH
Confidence 99999976 56899999999999999999887766 5789999995432 37899999999998874 556788888
Q ss_pred HhccccCee
Q 022864 154 SKWMKEDTL 162 (291)
Q Consensus 154 ~~~LkpgG~ 162 (291)
.+.+++++.
T Consensus 153 ~~~~~~~~~ 161 (230)
T PRK07580 153 ASLTRGSLI 161 (230)
T ss_pred HhhcCCeEE
Confidence 887654443
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.65 E-value=1e-15 Score=121.99 Aligned_cols=114 Identities=20% Similarity=0.200 Sum_probs=89.3
Q ss_pred HHHHHHH-HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 51 MLELYCE-RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+...++. .++...-.++||+|||.|.++..|+.+ ..+++++|+|+..++.|+++... .++|+++++|+.+..+++
T Consensus 30 K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~~ 105 (201)
T PF05401_consen 30 KYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPEG 105 (201)
T ss_dssp HHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS
T ss_pred HHHHHHHHhcCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCCC
Confidence 4444433 466677789999999999999999988 46899999999999999988764 358999999999987779
Q ss_pred CccEEEEcccccccc---cHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMK---NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|+++.+++++. +...+++++...|+|||.+++.+.
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999999999995 366799999999999999999776
No 55
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.65 E-value=2.7e-15 Score=132.66 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=92.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
++.+......+|||+|||+|.++..+++++|..+|+++|+|+.+++.++++++.+++ ..+++..|.... .+++||+|+
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~-~~~~fDlIv 266 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSD-IKGRFDMII 266 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccc-cCCCccEEE
Confidence 333443445589999999999999999998888999999999999999999998887 467788887653 247899999
Q ss_pred Eccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 136 SIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+.++|+. .....+++.+.+.|||||.+++...
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999864 3457899999999999999988654
No 56
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.65 E-value=7.9e-15 Score=121.46 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------------CCCCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~ 119 (291)
+...+..+...++.+|||+|||.|..+.+|+++ |.+|+|+|+|+.+++.+.+..... .-.++++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 333444443456779999999999999999987 899999999999998753321100 012689999
Q ss_pred ccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 120 ADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|+.++... ++||.|+...+++|++ ....+++.+.++|||||++++.+...
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 999987643 6799999999988883 34669999999999999877776654
No 57
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.65 E-value=3.8e-15 Score=130.78 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEAS 130 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 130 (291)
...+++.+...++.+|||||||+|.++..+++++|+.+++++|. +.+++.+++++...++ ++++++.+|+.+.+.+ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-E 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-C
Confidence 34456666777889999999999999999999999999999998 7899999999998887 5799999999865443 4
Q ss_pred ccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|+|++..++|+..+ ...+++++.+.|+|||++++.++..
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 799999999988743 3679999999999999999987644
No 58
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.65 E-value=4.1e-15 Score=123.53 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
-.+...+++.+...++.+|||||||+|..+..+++.. ++.+|+++|+++++++.++++++..+.+++.++.+|......
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 3456667777788899999999999999999998774 346999999999999999999998888889999999877544
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+ .+||+|++......+ .+.+.+.|||||++++..
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 4 789999998776544 245677899999988854
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.65 E-value=3.2e-15 Score=121.04 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=89.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...+. ++.++.+|+.+.. .++||+|+++.++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCC
Confidence 4456799999999999999999874 3999999999999999999988776 6889999987754 3689999999988
Q ss_pred ccccc---------------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 141 EHMKN---------------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 141 ~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++.++ ...+++.+.++|||||.+++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 65532 3568999999999999998876544
No 60
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=1.9e-15 Score=119.89 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=93.5
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeE-EEEccccCCc--cCCCccEE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVE-IIVADISTFE--MEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~-~~~~d~~~~~--~~~~~D~i 134 (291)
.+.......||++|||+|..-.+.- .-|+.+||++|+++.|.+.+.+.++++...++. |+.++.++++ ..+++|.|
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred HhcccCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeE
Confidence 3444555678999999999866543 236899999999999999999998887555666 9999999987 34999999
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++..++..++++.+.++++.++|+|||++++..-
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999999999999999999999999988554
No 61
>PLN03075 nicotianamine synthase; Provisional
Probab=99.64 E-value=3.8e-15 Score=127.50 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCcchHHHH-HH-HHCCCCEEEEEcCCHHHHHHHHHHHHH-hCC-CCeEEEEccccCCccC-CCccEEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLY-IA-QKYSNCKITGICNSKTQKEFIEEQCRV-LEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~-la-~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~~v~~~~~d~~~~~~~-~~~D~i~~ 136 (291)
.++.+|+|||||.|.++.. ++ ..+|+.+++++|+++++++.|++.++. .++ ++++|..+|+.+.... +.||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998865443 33 456889999999999999999999964 676 4699999999986533 78999999
Q ss_pred ccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022864 137 IEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. +++++ ++..++++++.+.|+|||.+++..
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 88887 789999999999999999999976
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.64 E-value=1.6e-15 Score=124.35 Aligned_cols=107 Identities=16% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~i~~~~ 138 (291)
+..+|||||||+|.++..+++.+|+.+|+|+|+++.+++.+++++...+++++.++++|+.++. .+ +.+|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999999999999999999999999999998888889999999998643 23 5899999987
Q ss_pred ccccccc--------HHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFEHMKN--------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+..+.+. ...+++.+.++|||||.+++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 6554432 157899999999999999987643
No 63
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.63 E-value=6.3e-16 Score=122.95 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=115.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cC-CCccEEEEc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--ME-ASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~i~~~ 137 (291)
+.|+.+|||+|||.|.+..+|.+.. +++.+|+|++++.+..+.+ + .+.++++|+.+-. ++ ++||.|+++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----r---Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----R---GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----c---CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 4678999999999999999998864 8999999999997766554 3 4678999998732 33 899999999
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccCCcccccccCCccchhhhh-ccCCCCCCcHHHHHHhhcCcEEEEeee
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFAYHFEDTNDDDWITKY-FFTGGTMPSANLLLYFQDDVSVVDHWL 216 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
.+++++.++..+++++.|+ |...+++.|+ ...|..+. +.-.|.||... ...-.|.
T Consensus 83 qtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN------------Fg~W~~R~~l~~~GrmPvt~---------~lPy~WY 138 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRV---GRRAIVSFPN------------FGHWRNRLQLLLRGRMPVTK---------ALPYEWY 138 (193)
T ss_pred hHHHhHhHHHHHHHHHHHh---cCeEEEEecC------------hHHHHHHHHHHhcCCCCCCC---------CCCCccc
Confidence 9999999999999998765 5566666654 34455443 23356666533 2334677
Q ss_pred cCCCcHHHHHHHHHHHHHhcHHhHhhh
Q 022864 217 VNGKHYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 217 ~~~~~y~~tl~~w~~~l~~~~~~~~~~ 243 (291)
+++....-|+++..+...+.+.+|.+.
T Consensus 139 dTPNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 139 DTPNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred CCCCcccccHHHHHHHHHHCCCEEEEE
Confidence 777655779999999988888887654
No 64
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.63 E-value=1.3e-14 Score=114.77 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=103.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
...+.++...++.+++|||||+|..+..++...|..+|+++|-+++.++..++|+.+.+.+|+.++.+++.+.... ..+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 3456788899999999999999999999997788999999999999999999999999999999999999886544 479
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|.|+.... .+.+.+++.+...|||||++++.....++
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999887 36688999999999999999997776544
No 65
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.63 E-value=1.4e-14 Score=119.40 Aligned_cols=114 Identities=15% Similarity=0.231 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
......+..++.. ..++.+|||+|||+|..+..+++..|+.+++|+|+|+++++.|+++. +++.+.++|+.+
T Consensus 28 ~~~~~~~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~- 99 (204)
T TIGR03587 28 AAKLAMFARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD- 99 (204)
T ss_pred HHHHHHHHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-
Confidence 3333444444443 34677999999999999999998877889999999999999987653 257788899888
Q ss_pred ccC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 126 EME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+.+ ++||+|+++.+++|+. +..++++++.+++ ++.+++....
T Consensus 100 ~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 100 PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 444 8999999999999984 4677888888886 5677776653
No 66
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=8.1e-15 Score=124.36 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=103.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC
Q 022864 34 CCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ 113 (291)
Q Consensus 34 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 113 (291)
.|.|+.. .++... +.+++.+....+.+|||+|||.|.+++.+++..|..+++.+|.|...++.++++++.++++
T Consensus 135 pGVFS~~--~lD~GS----~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 135 PGVFSRD--KLDKGS----RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE 208 (300)
T ss_pred CCCCcCC--CcChHH----HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC
Confidence 3788754 344333 3455666666666999999999999999999999999999999999999999999999886
Q ss_pred CeEEEEccccCCccCCCccEEEEccccccccc-H----HHHHHHHHhccccCeeEEEEee
Q 022864 114 NVEIIVADISTFEMEASYDRIYSIEMFEHMKN-Y----QNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 114 ~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~-~----~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..+...|..+-.. ++||+|+||.+||.-.+ . .+++....++|++||.|.+..-
T Consensus 209 ~~~v~~s~~~~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 209 NTEVWASNLYEPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEEeccccccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 65666677666443 49999999999986533 2 3799999999999999988654
No 67
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.62 E-value=3.7e-15 Score=123.96 Aligned_cols=113 Identities=25% Similarity=0.359 Sum_probs=97.5
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CCcc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~---~~~D 132 (291)
.........+|||+|||+|..+..++++.+.+++++||+++++.+.|+++.+.+++ ++++++++|+.++... .+||
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 34455568899999999999999999997779999999999999999999999888 5899999999997654 5699
Q ss_pred EEEEccccccc------------------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEHM------------------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+||.++... .+++.+++...++|||||.+.+..+.
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 99999987544 12678999999999999999887654
No 68
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.62 E-value=1.8e-14 Score=118.35 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=92.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-cc-CCCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EM-EASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~-~~~~ 131 (291)
.++..+...++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++++..++++++++.+|+.+. .. ...+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 456666777889999999999999999988777889999999999999999999888887899999998652 11 1346
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|.++... ..+...+++.+.+.|+|||.+++..+..
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 7776532 2356789999999999999999987643
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=4.2e-15 Score=111.70 Aligned_cols=104 Identities=23% Similarity=0.370 Sum_probs=88.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~~D~i~~~~~ 139 (291)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.++...+. ++++++++|+.+.. .. ++||+|+++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999986 58999999999999999999999887 58999999999875 33 89999999998
Q ss_pred cccc--------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... .....+++.+.+.|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8753 1346789999999999999998765
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=2e-14 Score=124.42 Aligned_cols=107 Identities=19% Similarity=0.217 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++..|+.+|+++|+|+.+++.|++++...++ +++.++.+|+.+....++||+|+++.+.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 345799999999999999999988889999999999999999999998887 4799999998664333689999998654
Q ss_pred ccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 141 EHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
... .....+++.+.+.|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 211 1135678999999999999988654
No 71
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.61 E-value=1.6e-14 Score=121.88 Aligned_cols=115 Identities=25% Similarity=0.357 Sum_probs=97.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~ 129 (291)
+..+...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+. ++++...|+.+.+ ..+
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCC
Confidence 444444444567889999999999999998875 67999999999999999988876665 6888888888764 237
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+||+|++..+++++.+...+++.+.+.|+|||.+++..+.
T Consensus 114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 8999999999999999999999999999999999987654
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=99.61 E-value=1.8e-14 Score=120.70 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.+...+......++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...+. ++.++.+|+.+.....+
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCC
Confidence 34455555566778899999999999999998752 34999999999999999999988777 68899999877533478
Q ss_pred ccEEEEcccccccc---------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHMK---------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~~---------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||+|+++.++.... ....+++.+.++|||||++++...
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999987654321 145688899999999999987544
No 73
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.61 E-value=2.9e-14 Score=117.29 Aligned_cols=110 Identities=15% Similarity=0.329 Sum_probs=92.5
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASY 131 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~ 131 (291)
+.++...++.+|||+|||+|.++..++... ++.+|+++|+++.+++.++++++..++ +++.++.+|+.+... ...|
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 466788899999999999999999988764 457999999999999999999998884 689999999977432 2689
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++... ..++..+++.+.+.|||||++++...
T Consensus 113 D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 99998652 35678899999999999999987554
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.60 E-value=2.4e-14 Score=119.68 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccc
Q 022864 46 DAEKAMLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADI 122 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~ 122 (291)
+........+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.++++....+. +++.+..+|+
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 113 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 334445555666555 457889999999999999999876 67999999999999999999887765 4799999999
Q ss_pred cCCccCCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEE
Q 022864 123 STFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 123 ~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+ .+||+|++..+++|++ +...+++++.+.+++++++.+
T Consensus 114 ~~~~--~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 114 LSLC--GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hhCC--CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 8875 7899999999998874 467789999998887766544
No 75
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.60 E-value=7.6e-15 Score=114.21 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHcC---CCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEE
Q 022864 45 EDAEKAMLELYCERSR---LEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIV 119 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~ 119 (291)
++++.++++.+.+... +.... +|||+|||.|.+...|++..=....+|||.|+.+++.|+..++..+.++ |+|.+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 4456677777776654 33333 9999999999999999987323459999999999999999999999865 99999
Q ss_pred ccccCCccC-CCccEEEEcccccccc--------cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 120 ADISTFEME-ASYDRIYSIEMFEHMK--------NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 120 ~d~~~~~~~-~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.|+.+.... ++||+|.--+.+..+. .+...+..+.+.|+|||+++|.+++..
T Consensus 125 ~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 125 LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 999996544 8899998877766551 234578889999999999999887654
No 76
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.59 E-value=2.1e-14 Score=127.36 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=98.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--c-CCC
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--M-EAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~-~~~ 130 (291)
.+++.+....+..+||||||+|.++..+|..+|...++|+|+++.+++.+.+++...+++|+.++++|+..+. . +++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 4555555566779999999999999999999999999999999999999999999999989999999997642 2 378
Q ss_pred ccEEEEcccccccccH------HHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEHMKNY------QNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+|.|+++.+..|.... ..+++.+.++|+|||.+.+.+-..
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 9999998776654322 579999999999999999977543
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.59 E-value=3.4e-14 Score=123.30 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
..+|||+|||+|.++..++...|+.+|+++|+|+.+++.+++++...++. ++.++.+|+.+.....+||+|+++.+...
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence 36999999999999999999888889999999999999999999988884 59999999887432248999999854321
Q ss_pred c-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 143 M-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 143 ~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. ..+..+++.+.+.|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1 1356788999999999999988654
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.59 E-value=4.4e-14 Score=120.51 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
.++..+++.+. ..+.+|||+|||+|.++..+++..|..+++|+|+++.+++.+++++...+++++.++.+|+.+....+
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 153 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGG 153 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCC
Confidence 34445555443 34569999999999999999998888899999999999999999999888877999999997743347
Q ss_pred CccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+||+|+++.++.... ....+++.+.++|+|||.+++..
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 899999987654311 12467899999999999998854
No 79
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.3e-14 Score=122.29 Aligned_cols=131 Identities=20% Similarity=0.215 Sum_probs=97.1
Q ss_pred HhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHH
Q 022864 24 LVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFI 103 (291)
Q Consensus 24 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a 103 (291)
.-+|+.+.+++|..++. .+.-..++.+. .++.+|||+|||+|.+++..++.. ..+|+|+|++|..++.+
T Consensus 133 i~lDPGlAFGTG~HpTT---------~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa 201 (300)
T COG2264 133 IELDPGLAFGTGTHPTT---------SLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAA 201 (300)
T ss_pred EEEccccccCCCCChhH---------HHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHH
Confidence 45678888877776643 22333333332 378999999999999999999773 45799999999999999
Q ss_pred HHHHHHhCCCC-eEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 104 EEQCRVLELQN-VEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 104 ~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++|++.++++. +.....+....+..++||+|++|-.- .-...+...+.+.|||||+++++-+
T Consensus 202 ~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA---~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 202 RENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA---EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred HHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH---HHHHHHHHHHHHHcCCCceEEEEee
Confidence 99999998843 33333344443333699999998532 2346788999999999999999765
No 80
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=4.4e-14 Score=123.44 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=87.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
..+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|+++++..++ +++.++++|+.+....++||+|+++.+...
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 3699999999999999999988889999999999999999999998887 469999999876433368999999865421
Q ss_pred c-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 143 M-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 143 ~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. .....+++.+.+.|+|||.+++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 123578899999999999999854
No 81
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.58 E-value=3.9e-14 Score=118.78 Aligned_cols=105 Identities=27% Similarity=0.419 Sum_probs=92.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+..++.+...|+.+.+.. ++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999999998876 568999999999999999988877664688999998876543 689999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++.++..+++.+.+.|+|||.+++..++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 99999999999999999999999887654
No 82
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5e-14 Score=113.82 Aligned_cols=111 Identities=22% Similarity=0.207 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~ 128 (291)
.+...+++.+..+++.+|||||||+|..+..|++. ..+|+.+|..++..+.|+++.+..|+.||.++++|...- +..
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 45677888889999999999999999999999988 449999999999999999999999998899999999884 433
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+||.|+.......++.. +.+.||+||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 899999999988777633 6778999999988654
No 83
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.57 E-value=3.4e-14 Score=126.80 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 127 (291)
..++.++..+ .++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.++++++..+. ++.++++|+.+...
T Consensus 240 ~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 240 HLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPS 316 (423)
T ss_pred HHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccccc
Confidence 3444444443 345699999999999999999888889999999999999999999988876 89999999976432
Q ss_pred CCCccEEEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 EASYDRIYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++||+|+|+.+...- ..+..+++.+.+.|+|||.+++..
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2679999998865211 013567788889999999988754
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.57 E-value=6e-14 Score=121.89 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++..+++. ++.+...+.... ..++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH
Confidence 467899999999999998888653 469999999999999999999988874 466666664332 23789999998654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
. ....++..+.+.|||||.++++.+.
T Consensus 236 ~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 E---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred H---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 3467899999999999999997653
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.57 E-value=5.7e-14 Score=119.08 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 129 (291)
+.+.+...+..-.|++|||||||.|.++..++... ...|+|+|+++..........+-.|.+ .+.....-+++++..+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 45566666655678999999999999999999874 457999999998876654433334432 2344435667766568
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.||+|+|.++++|..++-..+..+++.|+|||.+++.+...+.
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 8999999999999999999999999999999999998876554
No 86
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.57 E-value=1.3e-13 Score=114.71 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=88.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---------------CCeEE
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---------------QNVEI 117 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------~~v~~ 117 (291)
...+..+...++.+|||+|||.|..+.+|+++ |.+|+|||+|+..++.+.+ +.++ .+|++
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEE
Confidence 33443344456789999999999999999987 8999999999999887642 2211 36899
Q ss_pred EEccccCCccC--CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 118 IVADISTFEME--ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 118 ~~~d~~~~~~~--~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++|+.++... ..||+|+-..++++++ ....+++.+.++|+|||++++.+..
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 99999998644 6899999999998884 4567999999999999976654443
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.57 E-value=7.5e-14 Score=116.14 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
....+++.+...++.+|||+|||+|..+..+++. ..+|+++|+++++++.++++++..+++++.++.+|..+.... +
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~--~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL--VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH--hCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 3445566677788999999999999999988876 358999999999999999999988887899999998664333 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998876544 3457889999999988765
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.57 E-value=6.9e-14 Score=123.87 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
..++.....+++.+|||+|||+|.++..++.. +.+++|+|+++.++..++++++..+++++.+..+|+.+++.. ++|
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence 34445556788999999999999999887765 789999999999999999999998887789999999998765 789
Q ss_pred cEEEEccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|+++.++... ..+..+++.+.+.|||||++++..+..
T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999998765321 125789999999999999999877654
No 89
>PRK04266 fibrillarin; Provisional
Probab=99.56 E-value=9.1e-14 Score=116.03 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=85.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC----ccCCCcc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF----EMEASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D 132 (291)
+.+++.++.+|||+|||+|..+..+++..+..+|+++|+++.|++.+.++++.. +++.++.+|+... ...++||
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCC
Confidence 357888999999999999999999998875568999999999999887776653 4789999998752 1236799
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|++.... ......+++++.++|||||.+++..+
T Consensus 144 ~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 144 VIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EEEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99965321 11223468999999999999999644
No 90
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.55 E-value=9.7e-14 Score=121.15 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCccCCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++++..+ ..++.|..+|+.++ .++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 5789999999999999999976 7899999999999999999887642 23678989998765 3789999999
Q ss_pred cccccccc--HHHHHHHHHhccccCeeEE
Q 022864 138 EMFEHMKN--YQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 138 ~~l~~~~~--~~~~l~~~~~~LkpgG~l~ 164 (291)
.+++|+++ ...+++.+.+ +.+||.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99988854 3456666665 45665544
No 91
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=4.3e-14 Score=131.48 Aligned_cols=114 Identities=21% Similarity=0.341 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccC-
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~- 128 (291)
...+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++.. ...+++.++++|+.. ++.+
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccCCCC
Confidence 345556666667789999999999999999987 569999999999998765432 123579999999964 3344
Q ss_pred CCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeec
Q 022864 129 ASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++||+|++..+++|+++ ...+++++.++|||||++++.+..
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999999999965 578999999999999999987654
No 92
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.55 E-value=8.2e-14 Score=120.27 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSI 137 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~ 137 (291)
.+..+|||+|||+|.++..+++..+. .+++|+|+|+.+++.|.++. +++.+..+|+.+++++ ++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence 45678999999999999999877642 47999999999998886542 3688999999988766 789999986
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.. ...++++.++|||||++++.+++..
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 54 2246788999999999999877653
No 93
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.55 E-value=8.7e-14 Score=118.57 Aligned_cols=129 Identities=20% Similarity=0.211 Sum_probs=91.3
Q ss_pred HHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHH
Q 022864 20 SFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQ 99 (291)
Q Consensus 20 ~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~ 99 (291)
+.....+++.+.++++..+.. ...+..+... ..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt--------~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~ 154 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTT--------RLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQA 154 (250)
T ss_pred CeEEEEECCCCccCCCCCHHH--------HHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHH
Confidence 333456677777766654421 2222233222 3568899999999999999877653 3469999999999
Q ss_pred HHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 100 KEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 100 ~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++.+++++..+++ .++.+..+| .+||+|+++... .....+++.+.++|||||.++++.+.
T Consensus 155 l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 155 VEAARENAELNGVELNVYLPQGD-------LKADVIVANILA---NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 9999999988876 334443332 279999997543 23467889999999999999997653
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.55 E-value=4.1e-14 Score=121.93 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=93.5
Q ss_pred HHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHH
Q 022864 23 KLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEF 102 (291)
Q Consensus 23 ~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~ 102 (291)
...+++.|.+++|..+. .++.-.+++.+ ..++.+|||+|||+|.+++..++.. ..+|+|+|+++.+++.
T Consensus 131 ~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~ 199 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEA 199 (295)
T ss_dssp EEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHH
T ss_pred EEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHH
Confidence 34678888888776652 23333444444 3567899999999999999998763 4589999999999999
Q ss_pred HHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 103 IEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 103 a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++|+..+++. ++.+ ....+.. .++||+|++|-... -+..++..+.++|+|||.++++-+-.
T Consensus 200 a~~N~~~N~~~~~~~v--~~~~~~~-~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 200 ARENAELNGVEDRIEV--SLSEDLV-EGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HHHHHHHTT-TTCEEE--SCTSCTC-CS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred HHHHHHHcCCCeeEEE--EEecccc-cccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH
Confidence 99999999984 3433 2222222 28999999986553 34668888999999999999977643
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=112.34 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC--eEEEEccccCCccCCCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN--VEIIVADISTFEMEASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~D~i~~~~ 138 (291)
..++.+|||+|||+|.++..+++. +.+++++|+|+++++.+++++...+..+ +.++.+|+.+.....+||+|+++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence 367789999999999999999987 7899999999999999999998877743 889999987744336899999987
Q ss_pred ccccc---------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHM---------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~---------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++... .....+++++.++|||||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 66431 1245689999999999999887654
No 96
>PRK06202 hypothetical protein; Provisional
Probab=99.53 E-value=1.1e-13 Score=116.65 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~ 135 (291)
..++.+|||+|||+|.++..+++. .++.+|+|+|+|+++++.++++.... ++.+...+...++.. ++||+|+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEE
Confidence 356789999999999999888753 34569999999999999998765433 456666666555444 7899999
Q ss_pred Eccccccccc--HHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++.+++|+++ ...+++++.++++ |.+++.+...
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 9999999976 4579999999998 5666655543
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=2.6e-13 Score=117.39 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 130 (291)
.++.++......++.+|||+|||+|.++..++...|..+|+++|+|+.+++.+++++......++.++.+|+.+....++
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~ 175 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGR 175 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCc
Confidence 34444444455677899999999999999999988889999999999999999999872233579999999876433378
Q ss_pred ccEEEEccccccc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
||+|+++.++... ..+..+++.+.+.|+|||++++..
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999998654321 124568888889999999998843
No 98
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.53 E-value=2e-13 Score=116.08 Aligned_cols=116 Identities=10% Similarity=0.109 Sum_probs=88.8
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
.+++.++..+. ..++.+|||+|||+|.++..+++..++.+|+++|+|+.+++.++++++.++ ++++++|+.+...
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~ 148 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT 148 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch
Confidence 34444444333 233468999999999999999988878899999999999999999988765 4788999876432
Q ss_pred --CCCccEEEEcccccccc--------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 128 --EASYDRIYSIEMFEHMK--------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 --~~~~D~i~~~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++||+|+++.++.... -+..+++.+.++|||||++++...
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 25799999998753210 135788888899999999998653
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.53 E-value=1.2e-13 Score=113.68 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 127 (291)
-.+...+++.+.++++.+|||||||+|..+..++... +...|+++|.++...+.|++++...+..++.++.+|...-..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 3456778888889999999999999999999999874 345799999999999999999999999899999999877443
Q ss_pred C-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 128 E-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. .+||.|++......++ ..+.+.|++||++++..-
T Consensus 138 ~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 4 8999999998886553 236777999999988554
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.52 E-value=1.5e-13 Score=113.70 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=82.8
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---
Q 022864 52 LELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--- 126 (291)
Q Consensus 52 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--- 126 (291)
+.++.++.. .+++.+|||||||+|.++..+++.. +..+|+|||+++. ...+++.++++|+.+..
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLK 107 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHH
Confidence 444555555 4678899999999999999999885 3469999999881 12347899999999853
Q ss_pred -----c-CCCccEEEEccccccccc-----------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 -----M-EASYDRIYSIEMFEHMKN-----------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 -----~-~~~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. .++||+|+|+.+.++..+ ...+++.+.++|||||.+++..+..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 2 278999999876554322 2468999999999999999977644
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.3e-13 Score=116.27 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=86.2
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccc-
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMK- 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~- 144 (291)
+|||+|||+|..++.++...|.++|+|+|+|+..++.|++|+..+++.++.++.+|+.+-.. ++||+|+||.+.-.-+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC-CceeEEEeCCCCCCCcc
Confidence 89999999999999999998888999999999999999999999997677777778776433 5999999998653221
Q ss_pred ------------------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 145 ------------------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ------------------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-...++..+.+.|+|||.+++..-
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 146788889999999999888653
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.50 E-value=3e-13 Score=125.82 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
++.+|||+|||+|.++..++...|+.+|+++|+|+.+++.|++++...++ +++.++.+|+.+....++||+|+|+.++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 35689999999999999999888889999999999999999999988887 47999999987643336899999987543
Q ss_pred cc--------------------------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 142 HM--------------------------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 142 ~~--------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. ..+..+++.+.++|+|||.+++..
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 21 113557888899999999998854
No 103
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.50 E-value=5.5e-13 Score=116.61 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC-ccCCC-----ccE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF-EMEAS-----YDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~~-----~D~ 133 (291)
.++.+|||+|||+|..+..|++..+ +.+|+++|+|++|++.+.++...... -++.++++|+.+. ..... ..+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 4668999999999999999998865 58999999999999999988765432 2577889999873 33322 234
Q ss_pred EEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+++..++.+++ +...+++++++.|+|||.+++..-..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44455677763 46679999999999999999865444
No 104
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=5.9e-13 Score=116.50 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.++..+++.+..+++.+|||+|||+|.++..+++..+ ...|+++|+++++++.|+++++..+.+++.++.+|..+....
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 3455666777788889999999999999999998763 247999999999999999999988888899999998775444
Q ss_pred -CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+||+|++......+ ...+.+.|+|||.+++..
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 689999998655433 334678899999988854
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=6.3e-13 Score=121.69 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=93.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCC
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EAS 130 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 130 (291)
.++..++..++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++++..|+ ++.++++|+.+... .++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCC
Confidence 34445667789999999999999999999887567999999999999999999999887 57899999987532 267
Q ss_pred ccEEEEcccccc------------c----------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 131 YDRIYSIEMFEH------------M----------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 131 ~D~i~~~~~l~~------------~----------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
||.|+++.+... . ....++++.+.+.|||||.+++++++.
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999997664321 1 113468999999999999999887643
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.48 E-value=1.2e-12 Score=110.63 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=101.3
Q ss_pred hhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEE
Q 022864 13 QHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITG 92 (291)
Q Consensus 13 ~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~ 92 (291)
..||.....|+.|-+...+-...+|. + .+ .+..++ +......+|||+|||+|.++..++.+.++.+|++
T Consensus 25 ~~~~~~~~v~~~~~g~~~~~~G~FfT-P-~~-------i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~g 93 (279)
T PHA03411 25 LTYEEKEFCYNNYHGDGLGGSGAFFT-P-EG-------LAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVC 93 (279)
T ss_pred cccCcHHHHHHhcccccccCceeEcC-C-HH-------HHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEE
Confidence 45666667777777776554434443 2 11 121221 1223456999999999999999888765689999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccccc--------------------HHHHHHH
Q 022864 93 ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKN--------------------YQNLLKK 152 (291)
Q Consensus 93 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~--------------------~~~~l~~ 152 (291)
+|+|+.+++.++++. +++.++++|+.++....+||+|+++.++.+.+. ..+++..
T Consensus 94 VDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~ 168 (279)
T PHA03411 94 VELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD 168 (279)
T ss_pred EECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhh
Confidence 999999999887753 368899999998765578999999999987521 2456777
Q ss_pred HHhccccCeeEEEEee
Q 022864 153 ISKWMKEDTLLFVHHF 168 (291)
Q Consensus 153 ~~~~LkpgG~l~~~~~ 168 (291)
...+|+|+|.+.+...
T Consensus 169 v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 169 VGYFIVPTGSAGFAYS 184 (279)
T ss_pred hHheecCCceEEEEEe
Confidence 7889999998777633
No 107
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1e-12 Score=108.50 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=102.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCC
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 129 (291)
...++..+++.++.+|+|.|.|+|.++.+|+.. .|..+|+.+|+.++..+.|++|++..++. ++++..+|+.+...+.
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 456778889999999999999999999999964 46689999999999999999999999885 4999999999976667
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.||+|+. .++++..+++++.+.|||||.+++-.|+.+
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 9999988 568999999999999999999999877654
No 108
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.47 E-value=2.1e-14 Score=115.79 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=104.6
Q ss_pred HHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEE
Q 022864 11 KEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKI 90 (291)
Q Consensus 11 ~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v 90 (291)
++.-+|.-.+-|..-+-+...|+- -.++.+++.+++..+-.++||+|||||..+..+... ..++
T Consensus 87 Ve~LFD~~Ae~Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~--a~~l 150 (287)
T COG4976 87 VETLFDQYAERFDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM--ADRL 150 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH--Hhhc
Confidence 445556656666665555565531 345677777777777899999999999999999877 5689
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 91 TGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|||+|.+|++.|.++ |+ --...++|+..+. .+++||+|++..++.++.++..++..+...|+|||.+.|++
T Consensus 151 tGvDiS~nMl~kA~eK----g~-YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 151 TGVDISENMLAKAHEK----GL-YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred cCCchhHHHHHHHHhc----cc-hHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 9999999999887653 32 1123445554432 23789999999999999999999999999999999999876
Q ss_pred e
Q 022864 168 F 168 (291)
Q Consensus 168 ~ 168 (291)
-
T Consensus 226 E 226 (287)
T COG4976 226 E 226 (287)
T ss_pred c
Confidence 4
No 109
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=9e-13 Score=121.38 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=93.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCcc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYD 132 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D 132 (291)
...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|++++.++++|+.+... +++||
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 243 APALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322 (444)
T ss_pred HHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence 344566788999999999999999999875 567999999999999999999999998779999999987642 26899
Q ss_pred EEEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeec
Q 022864 133 RIYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 133 ~i~~~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+++.+.... + ....+++.+.++|||||.++.++..
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99987653211 0 1245899999999999999887654
No 110
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.47 E-value=9.7e-13 Score=112.90 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=92.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~ 135 (291)
.+...++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..++.++.++..|...+... +.||+|+
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 45667899999999999999999988753 358999999999999999999999987899999998876433 6799999
Q ss_pred Eccccccc----------------------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHM----------------------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+.... ....++++.+.+.|||||+++.++.+.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 86543211 123458999999999999998877654
No 111
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=9.1e-13 Score=120.45 Aligned_cols=114 Identities=21% Similarity=0.280 Sum_probs=94.3
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~ 133 (291)
..++..++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.++++++..|++++.++.+|+..++ ..++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 34567789999999999999999999875 45799999999999999999999999877999999998765 2378999
Q ss_pred EEEccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 IYSIEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|++..+.... + ...+++.++.+.|||||.++.++++.
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9986544221 1 23567999999999999999988764
No 112
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.3e-12 Score=120.28 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=93.1
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
..+...++.+|||+|||+|..+..+++.. ++.+|+++|+|+.+++.++++++..|++++.++.+|+.++....+||+|+
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl 323 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAIL 323 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEE
Confidence 34566788999999999999999988764 24699999999999999999999999878999999998876457899999
Q ss_pred Ecccccc-------------c---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEH-------------M---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~-------------~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..+... . .....++..+.+.|||||++++++++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 7532210 0 113468999999999999999988755
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.46 E-value=8.3e-13 Score=95.89 Aligned_cols=100 Identities=27% Similarity=0.453 Sum_probs=85.7
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEEcccccc-
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYSIEMFEH- 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~- 142 (291)
+|+|+|||.|..+..+++ .+..+++++|+++.+++.+++........++.++..|+.+... ..++|+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999987 4578999999999999988864444444579999999998764 378999999999988
Q ss_pred cccHHHHHHHHHhccccCeeEEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 678889999999999999999875
No 114
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.4e-12 Score=119.60 Aligned_cols=116 Identities=18% Similarity=0.219 Sum_probs=94.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-C
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-E 128 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~ 128 (291)
+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|++++.++.+|+.+.. . .
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 3445667789999999999999999999874 34699999999999999999999999888999999998765 2 2
Q ss_pred CCccEEEEccc------cccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIEM------FEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||.|++..+ +.+-++ ..++++++.+.|||||+++.++++.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999998643 222121 4678999999999999999877654
No 115
>PRK04457 spermidine synthase; Provisional
Probab=99.45 E-value=9.8e-13 Score=112.55 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc--CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~D~i~~~~ 138 (291)
.++.+|||||||+|.++..+++..|+.+++++|+++++++.+++++...+. ++++++.+|+.+... +++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456799999999999999999988899999999999999999998765543 589999999876532 26899999863
Q ss_pred ccc-ccc---cHHHHHHHHHhccccCeeEEEEeec
Q 022864 139 MFE-HMK---NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 139 ~l~-~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.-. ..+ ....+++.+.+.|+|||++++..+.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 111 111 2368999999999999999986543
No 116
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.44 E-value=3.1e-12 Score=108.52 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=90.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
..+.......+..+|||||+|.|.++..+++++|+.+++.+|+ |..++.+++ .++++++.+|+.+ +.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~-~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD-PLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT-CCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh-hhcc-cc
Confidence 4455666777788999999999999999999999999999999 888877776 3589999999994 4446 99
Q ss_pred EEEEcccccccc--cHHHHHHHHHhccccC--eeEEEEeeccC
Q 022864 133 RIYSIEMFEHMK--NYQNLLKKISKWMKED--TLLFVHHFCHK 171 (291)
Q Consensus 133 ~i~~~~~l~~~~--~~~~~l~~~~~~Lkpg--G~l~~~~~~~~ 171 (291)
+|++..++|..+ +...+|+++++.|+|| |+|+|.++..+
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 999999999984 4567999999999999 99999877543
No 117
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=1.7e-12 Score=119.42 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-
Q 022864 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE- 126 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 126 (291)
...+++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++++++++.+|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 3456677777777778899999999999999999987 5799999999999999999999888888999999997632
Q ss_pred ---c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 127 ---M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 127 ---~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
. ..+||+|+++.+.... ...++.+.+ ++|+++++++. ++.+.
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~---~~~~~~l~~-~~~~~ivyvSC-np~tl 405 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA---AEVMQALAK-LGPKRIVYVSC-NPATL 405 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh---HHHHHHHHh-cCCCeEEEEEe-ChHHh
Confidence 2 2579999998877543 355665555 68999888865 34333
No 118
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=3.6e-12 Score=104.25 Aligned_cols=119 Identities=13% Similarity=0.215 Sum_probs=89.7
Q ss_pred HHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 50 AMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 50 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
...+.+++.+. ..++.+|||+|||+|.++..++.+. ..+|+++|.++..++.++++++..+++++.++.+|+.+...
T Consensus 39 ~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~ 117 (199)
T PRK10909 39 RVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ 117 (199)
T ss_pred HHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh
Confidence 33334444332 2457899999999999999765554 57999999999999999999999888789999999977432
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHh--ccccCeeEEEEeecc
Q 022864 128 -EASYDRIYSIEMFEHMKNYQNLLKKISK--WMKEDTLLFVHHFCH 170 (291)
Q Consensus 128 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~LkpgG~l~~~~~~~ 170 (291)
..+||+|+++.++.. .-...+++.+.. +|+|+++++++....
T Consensus 118 ~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 118 PGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred cCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 257999999999632 224456666655 489999999876543
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=1.7e-12 Score=104.14 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=86.1
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASY 131 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 131 (291)
+.+++.+...++.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.+++.+ ..|
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCC
Confidence 45666777788899999999999999999987 67999999999999999888754 34799999999998766 469
Q ss_pred cEEEEcccccccccHHHHHHHHHhc--cccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKW--MKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~~~~~ 168 (291)
|.|+++.+++.. ..++.++.+. +.++|.++++.-
T Consensus 79 d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCcccH---HHHHHHHHhcCCCcceEEEEEEHH
Confidence 999999887532 3444444433 447888877643
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.43 E-value=3e-12 Score=117.30 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=92.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc---C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM---E 128 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~---~ 128 (291)
..++..++..++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++..|++ ++.+..+|...... .
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3445556778899999999999999999998876679999999999999999999998884 23346677665432 3
Q ss_pred CCccEEEEcc------ccccccc----------------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 ASYDRIYSIE------MFEHMKN----------------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~~~D~i~~~~------~l~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++||.|++.. ++...++ ..+++..+.+.|||||.++.++++.
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6799999754 3322222 3679999999999999999988765
No 121
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.41 E-value=2e-12 Score=106.02 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=79.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cC-C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-ME-A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~-~ 129 (291)
+.+.+.+ +++.+|||+|||+|.++..+++.. +..++|+|+|+++++.+++ . ++.++.+|+.+ .+ .+ +
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----R---GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhhcccccCCC
Confidence 3444443 367799999999999999888654 6789999999998877653 1 46788888876 32 33 7
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+||+|+++.+++|+++...+++++.+.++ .+++..+
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcC
Confidence 89999999999999999999999887655 4445443
No 122
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.41 E-value=5.6e-12 Score=104.63 Aligned_cols=116 Identities=21% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-h-----------CCCCeEEEE
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-L-----------ELQNVEIIV 119 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-----------~~~~v~~~~ 119 (291)
+..+++.+...++.+||..|||.|....+|+++ |.+|+|+|+|+..++.+.+.... . ...+|++.+
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 444555566778889999999999999999987 89999999999998887432211 0 113579999
Q ss_pred ccccCCccC--CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 120 ADISTFEME--ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 120 ~d~~~~~~~--~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+|+..+... ++||+|+=...+..+ ....+..+.+.++|+|||.+++.+..
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 999998765 689999999999888 45678999999999999996555543
No 123
>PTZ00146 fibrillarin; Provisional
Probab=99.41 E-value=3.6e-12 Score=108.89 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=81.7
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 131 (291)
+.+.+.++.+|||+|||+|.++..++... +...|++||+++.+.+.+.+.++.. +|+.++..|+.... ....+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 34567899999999999999999999885 3468999999998776666555433 47899999986521 12679
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|++... ...+...++.++.++|||||.+++.
T Consensus 204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999864 2333445667899999999999994
No 124
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.40 E-value=1.6e-11 Score=101.84 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=90.0
Q ss_pred HHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------------HhCCCCeEEEEccc
Q 022864 56 CERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------------VLELQNVEIIVADI 122 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~v~~~~~d~ 122 (291)
+..+...++.+||+.|||.|..+.+|+++ |.+|+|+|+|+..++.+.+... ..+ .++++.++|+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~ 112 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADI 112 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccC
Confidence 34445556789999999999999999988 8899999999999888755210 012 3789999999
Q ss_pred cCCccC----CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeec
Q 022864 123 STFEME----ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~----~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.++... ++||+|+-..++.+++ ...+..+.+.++|+|||.+++.+..
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 998641 6899999999999994 3567999999999999998887664
No 125
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=103.52 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCC--CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc
Q 022864 43 TLEDAEKAMLELYCERSRLED--GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 120 (291)
.+...|..+....++.+..++ ..-|||||||+|..+..|... +...+|+|+|+.|++.|.+.--+ -+++.+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-----gdlil~ 100 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-----GDLILC 100 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-----cCeeee
Confidence 444555667777777776665 779999999999999988865 78999999999999999873221 246788
Q ss_pred cccC-CccC-CCccEEEEcccccccc-------c----HHHHHHHHHhccccCeeEEEEeec
Q 022864 121 DIST-FEME-ASYDRIYSIEMFEHMK-------N----YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 121 d~~~-~~~~-~~~D~i~~~~~l~~~~-------~----~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
|+-+ +++. +.||.+++..+++++- + +..++..+..+|++|+..+++...
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 8875 4555 8999999999887761 1 345788999999999999997653
No 126
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=4.5e-12 Score=114.22 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc-----CCCccEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM-----EASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~-----~~~~D~i~ 135 (291)
++.+|||+|||+|.++..++.. ...+|++||+|+.+++.++++++.++++ +++++++|+.+... .++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999999877643 2459999999999999999999999884 79999999988531 25899999
Q ss_pred Eccccccc---------ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 136 SIEMFEHM---------KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 136 ~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++.+...- .++..++..+.++|+|||.++..+.++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99875322 235667778899999999999877543
No 127
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.37 E-value=6.4e-12 Score=110.65 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
..++..+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++++++++++|+.++..
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh
Confidence 344444444444345689999999999999999985 68999999999999999999999998789999999987643
Q ss_pred -CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 -EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++||+|+++.+-..+. ..+++.+ ..++|+++++++.
T Consensus 237 ~~~~~D~Vv~dPPr~G~~--~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 237 QGEVPDLVLVNPPRRGIG--KELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred cCCCCeEEEECCCCCCcc--HHHHHHH-HHcCCCeEEEEEC
Confidence 25799999998753321 2333333 3367877766643
No 128
>PRK00811 spermidine synthase; Provisional
Probab=99.37 E-value=5.1e-12 Score=109.39 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----CCCeEEEEccccCCcc--CCCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-----LQNVEIIVADISTFEM--EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~~~v~~~~~d~~~~~~--~~~~D~ 133 (291)
.+.+.+||+||||.|..+..+++..+..+|++||+++.+++.+++.+...+ .++++++.+|...+.. .++||+
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 345789999999999999999875445699999999999999999876431 2479999999987543 278999
Q ss_pred EEEccccccccc----HHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMKN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~~----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|++...-...+. ...+++.+++.|+|||++++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999753322211 36788999999999999987543
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.37 E-value=6.3e-12 Score=105.83 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
.+.+..+++ ..++.+|||+|||+|..+..++...+ +.+|+++|+++++++.|+++++..++ ++++++.+|+.+..
T Consensus 57 g~~L~~l~~---~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVK---IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHH---HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 344444443 34577999999999999998887653 57999999999999999999999998 47999999998742
Q ss_pred c-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 M-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. .++||+|++...- +.+..+++.+.+.|+|||.+++...
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 1 2589999986432 4567789999999999999887543
No 130
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.37 E-value=7.3e-12 Score=102.17 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cC-C
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------ME-A 129 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~-~ 129 (291)
...++.+|||+|||+|.++..++.+. +..+|+++|+|+.+ ..+++.++++|+.+.. .+ .
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 44788999999999999999998875 45689999999864 1236888889987642 22 6
Q ss_pred CccEEEEccccc--------cc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFE--------HM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+||+|+++.+.+ +. .....++..+.++|+|||++++..+.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 799999965421 11 12367899999999999999986543
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.36 E-value=9e-12 Score=101.81 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=85.6
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cCCCccEEEEcccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----MEASYDRIYSIEMF 140 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~~D~i~~~~~l 140 (291)
..+||||||.|.+...+|..+|+..++|+|++...+..+.+++...+++|+.++++|+..+. .++++|.|+.+.+=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999999999999999999999999999999998832 23789999998877
Q ss_pred ccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 141 EHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.|.+. ...+++.+.++|+|||.+.+.+-
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 66532 36799999999999999988764
No 132
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.35 E-value=1.4e-11 Score=103.58 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
..+..++..+++.||.+|||.|.|+|.++..|+.. .|..+|+.+|..++..+.|+++++..|+ +++++.+.|+....+
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 44667888899999999999999999999999975 4778999999999999999999999999 479999999975322
Q ss_pred ----CCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeeccC
Q 022864 128 ----EASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFCHK 171 (291)
Q Consensus 128 ----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~ 171 (291)
+..+|.|+. .++++..++..+.+.| +|||++++-.|+.+
T Consensus 107 ~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred cccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 267999888 4577888999999999 89999999877653
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.34 E-value=1.8e-11 Score=110.21 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
....++..+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.++++++.+++++++++.+|+.+..
T Consensus 217 ~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 217 VAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFA 294 (374)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHH
Confidence 33444455545444345679999999999999999965 6799999999999999999999998888999999998754
Q ss_pred cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. .+||+|+++.+-..+ ...+++.+. .++|++.++++.
T Consensus 295 ~~~~~~~D~vi~DPPr~G~--~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 295 TAQMSAPELVLVNPPRRGI--GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred HhcCCCCCEEEECCCCCCC--cHHHHHHHH-hcCCCeEEEEEe
Confidence 22 569999999986533 245556665 478999888864
No 134
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=6.9e-12 Score=121.29 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCcc--CCCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEM--EASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~--~~~~D~i~~~~ 138 (291)
++.+|||+|||+|.++..++... ..+|++||+|+.+++.+++|+..++++ +++++++|+.++.. ..+||+|+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999999752 347999999999999999999999884 79999999877532 36899999987
Q ss_pred ccc-----------ccccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFE-----------HMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.. ...++..++..+.++|+|||.+++++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 542 124567789999999999999988654
No 135
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.32 E-value=2.6e-11 Score=99.59 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEc
Q 022864 43 TLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~ 120 (291)
.+...+.+.+..+++.. ...+||||||++|..+.++++..| +.+|+.+|++++..+.|+++++..|+ ++|+++.+
T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 45666666777666543 456999999999999999998765 68999999999999999999999998 58999999
Q ss_pred cccCCcc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 121 DISTFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 121 d~~~~~~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+.+... .++||+|+....= .++...++.+.+.|+|||.+++...
T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccc
Confidence 9987421 1479999998643 5678889999999999999988543
No 136
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=6.5e-12 Score=102.46 Aligned_cols=106 Identities=24% Similarity=0.327 Sum_probs=85.8
Q ss_pred EEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----c-CCCccEEEEcc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----M-EASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~D~i~~~~ 138 (291)
+||++|||.|....-+.+..|+ ..|+++|.||.+++..+++..... +++.....|+.... . ++++|+|+++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEE
Confidence 8999999999999999887665 899999999999888877654332 35655566665532 2 28899999999
Q ss_pred ccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 139 MFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 139 ~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+|..+ .....+++++.++|||||.+++.+.+.-.
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 99988 45788999999999999999998887644
No 137
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.29 E-value=3.2e-11 Score=97.49 Aligned_cols=117 Identities=22% Similarity=0.299 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~- 128 (291)
+++.+.+.+. ..+.+|||||||+|..+.++++.+|..+..-.|.++..+..........+++|+ .-+..|+.+...+
T Consensus 14 Il~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 14 ILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 3444433333 233369999999999999999999999999999999998888888887777553 3445666654221
Q ss_pred --------CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 --------ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 --------~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
++||+|+|.+++|.+ .....+|+.+.+.|+|||.|++.-|
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 489999999999877 4567899999999999999998655
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=99.29 E-value=2.6e-11 Score=100.27 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .++.++.+|+.......+||+|++|.+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 36799999999999999998763 2569999999999999998764 358899999987655578999999998
Q ss_pred ccccc--c----------HHHHHHHHHhccccCee
Q 022864 140 FEHMK--N----------YQNLLKKISKWMKEDTL 162 (291)
Q Consensus 140 l~~~~--~----------~~~~l~~~~~~LkpgG~ 162 (291)
+.-.. + ...+++++.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 87431 1 45588888886666665
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.28 E-value=6.1e-11 Score=102.16 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCcc--CCCccEE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEM--EASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~--~~~~D~i 134 (291)
.+.+.+||+||||+|..+..+++..+..+++++|+++++++.+++.+...+ .++++++.+|...... .++||+|
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345569999999999999998876545789999999999999998875432 1468888888766422 2789999
Q ss_pred EEccccccc--cc--HHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHM--KN--YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~--~~--~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++....... .. ..++++.+.+.|+|||++++..
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 997653222 22 4678999999999999999864
No 140
>PLN02366 spermidine synthase
Probab=99.28 E-value=1.5e-11 Score=107.09 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCcc---CCCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEM---EASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~---~~~~D~ 133 (291)
.+++.+||+||||.|..++.+++..+..+|+.||+++.+++.+++.+... ++ ++++++.+|...+.. .++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45678999999999999999986532368999999999999999987643 22 479999999866421 368999
Q ss_pred EEEcccccccc----cHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|++...-...+ -...+++.++++|+|||+++++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 99965433222 135789999999999999987543
No 141
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.3e-10 Score=96.56 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=88.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCC----c-cC-CCccE
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTF----E-ME-ASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~----~-~~-~~~D~ 133 (291)
...+..+||+|||+|..+..++...|.++|+++|.|+.++..|.+|+...++ +++.+++-+++.. . .. +++|+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 3456689999999999999999888999999999999999999999999888 4677775544432 1 11 88999
Q ss_pred EEEccccccccc--------------------------HHHHHHHHHhccccCeeEEEEeeccCCc
Q 022864 134 IYSIEMFEHMKN--------------------------YQNLLKKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 134 i~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
++||.+.-.-.| ...++.-+.+.|+|||.+.+.....+..
T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 999986522211 3456777889999999999987655443
No 142
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.27 E-value=1.9e-11 Score=97.04 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=70.9
Q ss_pred EEEcCCHHHHHHHHHHHHHhC---CCCeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 91 TGICNSKTQKEFIEEQCRVLE---LQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 91 ~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+|++|++.|+++.+..+ .++++++++|+.+++.+ ++||+|++..+++++++...+++++.++|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999987765322 24799999999998876 78999999999999999999999999999999999998
Q ss_pred eeccC
Q 022864 167 HFCHK 171 (291)
Q Consensus 167 ~~~~~ 171 (291)
++..+
T Consensus 81 d~~~~ 85 (160)
T PLN02232 81 DFNKS 85 (160)
T ss_pred ECCCC
Confidence 87654
No 143
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.27 E-value=4.8e-11 Score=98.03 Aligned_cols=116 Identities=17% Similarity=0.329 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEE-cccc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIV-ADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~-~d~~ 123 (291)
.+-..+..+++ ..+.++|||||.+.|..+.+++...| +.+++.+|.++++.+.|++++++.|++ ++..+. +|..
T Consensus 46 e~g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 33444444444 45678999999999999999999887 679999999999999999999999994 588888 5877
Q ss_pred CCcc---CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEM---EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... .++||+|+....= .+++.+++.+.+.|+|||.+++...
T Consensus 123 ~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 6433 2899999987443 5678899999999999999988654
No 144
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.27 E-value=9e-11 Score=107.89 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
....++..+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++++++++.+|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 33455666666666677889999999999999999987 5699999999999999999999998888999999997632
Q ss_pred ----c-CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 127 ----M-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 127 ----~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. ..+||+|+++.+-..+ ...+++.+.+ ++|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 1 1469999998775322 2556666554 8899887774
No 145
>PLN02672 methionine S-methyltransferase
Probab=99.27 E-value=4.7e-11 Score=118.07 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=86.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC----------------CCeEEEEccccCCcc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL----------------QNVEIIVADISTFEM 127 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~~ 127 (291)
+.+|||+|||+|..++.+++++|..+|+|+|+|+.+++.|++|+..+++ +++.++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4699999999999999999998778999999999999999999987542 369999999987543
Q ss_pred C--CCccEEEEccccccc----------------------------------c----cHHHHHHHHHhccccCeeEEEEe
Q 022864 128 E--ASYDRIYSIEMFEHM----------------------------------K----NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ~--~~~D~i~~~~~l~~~----------------------------------~----~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. .+||+||||.+.-.- . -+.++++.+.++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 369999998864210 0 02667888889999999999865
Q ss_pred ec
Q 022864 168 FC 169 (291)
Q Consensus 168 ~~ 169 (291)
-.
T Consensus 279 G~ 280 (1082)
T PLN02672 279 GG 280 (1082)
T ss_pred Cc
Confidence 43
No 146
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.26 E-value=5.6e-11 Score=96.85 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHC---C--CCEEEEEcCCHHHHHHHHHHH---
Q 022864 40 ASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKY---S--NCKITGICNSKTQKEFIEEQC--- 107 (291)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~--~~~v~~vD~s~~~~~~a~~~~--- 107 (291)
....++......+..+++.....+..+|+..||++|. +++.+.+.. . ..+|+|+|+|+.+++.|++-.
T Consensus 8 d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~ 87 (196)
T PF01739_consen 8 DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPE 87 (196)
T ss_dssp TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEG
T ss_pred CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCH
Confidence 4455666656666555554444467899999999996 444444421 1 369999999999999987711
Q ss_pred -----------HH-----hC--------C-CCeEEEEccccC-CccCCCccEEEEcccccccc--cHHHHHHHHHhcccc
Q 022864 108 -----------RV-----LE--------L-QNVEIIVADIST-FEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKE 159 (291)
Q Consensus 108 -----------~~-----~~--------~-~~v~~~~~d~~~-~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~Lkp 159 (291)
++ .+ + ++|.|...|+.+ .+..+.||+|+|.+++.++. ...++++.+.+.|+|
T Consensus 88 ~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 88 RSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp GGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred HHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 00 01 1 468999999999 33338999999999999994 457899999999999
Q ss_pred CeeEEEE
Q 022864 160 DTLLFVH 166 (291)
Q Consensus 160 gG~l~~~ 166 (291)
||+|++.
T Consensus 168 gG~L~lG 174 (196)
T PF01739_consen 168 GGYLFLG 174 (196)
T ss_dssp EEEEEE-
T ss_pred CCEEEEe
Confidence 9999984
No 147
>PLN02476 O-methyltransferase
Probab=99.25 E-value=1.1e-10 Score=99.74 Aligned_cols=117 Identities=12% Similarity=0.152 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEcccc
Q 022864 46 DAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADIS 123 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~ 123 (291)
..+.+.+..+++ ..+..+|||||+++|..+.+++...| +.+|+++|.+++..+.|++++++.|+. +++++.+|+.
T Consensus 104 ~~~g~lL~~L~~---~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 104 PDQAQLLAMLVQ---ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHHHH---hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 333444444443 34578999999999999999997653 568999999999999999999999994 8999999997
Q ss_pred CCcc-------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEM-------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~-------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... .++||+|+....= .++..+++.+.+.|+|||.+++...
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 7421 2579999997653 5678899999999999999888543
No 148
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.24 E-value=3.4e-11 Score=105.89 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC---CCeEEEEccccCC------c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL---QNVEIIVADISTF------E 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~---~~v~~~~~d~~~~------~ 126 (291)
++.+|||||||-|+...-.... .-..++|+|++...++.|+++.+.. .. -...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7899999999988876666544 2568999999999999999988321 11 1356788887653 2
Q ss_pred cC-CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 127 ME-ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
.. .+||+|-|..++|+. .....+++++...|+|||+++..++....
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 22 589999999999988 34566999999999999999999887543
No 149
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.24 E-value=1.5e-10 Score=92.94 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHH------cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CCeEE
Q 022864 47 AEKAMLELYCER------SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEI 117 (291)
Q Consensus 47 ~~~~~~~~~~~~------~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~ 117 (291)
+...+...+.+. ....++.+|||||||+|..++.++...+..+|+..|.++ .++.++.+++.++ . .++.+
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence 334444555542 234578899999999999999999875578999999998 9999999998876 2 47889
Q ss_pred EEccccCCc----cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 118 IVADISTFE----ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 118 ~~~d~~~~~----~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...|+.+.. .. .+||+|++..+++.-.....+++.+.++|+|+|.+++....+
T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 888887632 12 589999999999988889999999999999999977766544
No 150
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.1e-10 Score=92.23 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=70.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
..+.-.+.+|+|+|||||.++...+-.. ..+|+|||+++++++.+++|+.+.+ .++.|+.+|+.++. .++|.++.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhcC--CccceEEEC
Confidence 4455678899999999999999888663 5799999999999999999998843 48999999999976 679999999
Q ss_pred cccccc
Q 022864 138 EMFEHM 143 (291)
Q Consensus 138 ~~l~~~ 143 (291)
.++...
T Consensus 116 PPFG~~ 121 (198)
T COG2263 116 PPFGSQ 121 (198)
T ss_pred CCCccc
Confidence 998655
No 151
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.23 E-value=1.1e-10 Score=106.67 Aligned_cols=128 Identities=22% Similarity=0.325 Sum_probs=89.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCC----CCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHHH
Q 022864 37 FSDASKTLEDAEKAMLELYCERSRLE----DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCR 108 (291)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~ 108 (291)
|+.+....+..+.++...+.+..... .+..|||+|||+|.++...++.. ...+|++||.|+.++..+++.++
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 33333334444455555555554433 25789999999999987766541 23699999999999888887777
Q ss_pred HhCC-CCeEEEEccccCCccCCCccEEEEcc--cccccccHHHHHHHHHhccccCeeEE
Q 022864 109 VLEL-QNVEIIVADISTFEMEASYDRIYSIE--MFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 109 ~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~--~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.++. ++|+++.+|++++..+.++|+|||-. ++-.-+-..+.+....+.|||||+++
T Consensus 236 ~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 236 ANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 7887 68999999999998889999999843 33222445678889999999999865
No 152
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.22 E-value=1e-10 Score=97.25 Aligned_cols=105 Identities=21% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---cC-CCccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---ME-ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~D~i~~~~~ 139 (291)
...+||||||.|.+...+|+++|...++|||+....+..+.+.+.+.+++|+.+++.|+..+. .+ ++.|-|..+.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 358999999999999999999999999999999999999999999999989999999998853 22 58999999887
Q ss_pred cccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
=.|.+. ...+++.+.+.|+|||.+.+.+-
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 766632 35799999999999999999764
No 153
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.22 E-value=2.2e-11 Score=99.44 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=74.9
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~ 143 (291)
.++|+|||+|..++.+++. -.+|+|+|+|+.|++.+++.....-. ........+..++... ++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 8999999999888888887 46999999999999988765432222 1233444444554433 899999999999998
Q ss_pred ccHHHHHHHHHhccccCe-eEEE
Q 022864 144 KNYQNLLKKISKWMKEDT-LLFV 165 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG-~l~~ 165 (291)
|+.++++.+.++||++| .+.+
T Consensus 114 -dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEEE
Confidence 78899999999999877 5444
No 154
>PRK01581 speE spermidine synthase; Validated
Probab=99.22 E-value=7.1e-11 Score=103.63 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=82.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-----HHhC--CCCeEEEEccccCCccC--CCc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-----RVLE--LQNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~--~~~v~~~~~d~~~~~~~--~~~ 131 (291)
...+.+||+||||.|..++.+.+..+..+|++||+++++++.|++.. .... .++++++.+|..++... ++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45567999999999999998887644579999999999999999621 1112 25899999999985323 689
Q ss_pred cEEEEcccccc---cc--cHHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEH---MK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~---~~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|++...-.. .. ....+++.+++.|+|||+++++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999843211 11 125689999999999999988743
No 155
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.20 E-value=7.3e-11 Score=95.93 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCC------CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 49 KAMLELYCERSRLE------DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 49 ~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
..--..++.++... ...+.||+|+|.|..+..+.... -.+|..||+.+..++.|++........-.++.+..+
T Consensus 35 i~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 35 IQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH
Confidence 33334455554332 46799999999999998776443 569999999999999998765442222367889999
Q ss_pred cCCccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 123 STFEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 123 ~~~~~~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+++.++ .+||+|++..++.|+ .++..+|++++..|+|+|++++-.-.
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~ 163 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENV 163 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecC
Confidence 998776 799999999999999 46788999999999999999996543
No 156
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.20 E-value=1.1e-10 Score=104.16 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=91.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC-----CCccEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME-----ASYDRIY 135 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~-----~~~D~i~ 135 (291)
|.+|||+-|=||.++.+++.. |+ +|+.||+|...++.|++|++.+|+ +++.|+++|+.++-.. .+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 899999999999999999976 66 999999999999999999999998 3589999999986432 4899999
Q ss_pred Eccccc---------ccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 136 SIEMFE---------HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 136 ~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+.++-. ...++..++..+.++|+|||.+++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 977432 125678899999999999999999876543
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=6.6e-10 Score=90.46 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc----C-CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM----E-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~----~-~~~D~i~~ 136 (291)
.+.+|||++||+|.++..++.+. ...|++||.++.+++.++++++..++. ++.++.+|+.+... . ..+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 57899999999999999999884 348999999999999999999998884 68999999966321 1 24788888
Q ss_pred cccccccccHHHHHHHHH--hccccCeeEEEEeecc
Q 022864 137 IEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~ 170 (291)
.+++.. .....+++.+. .+|+++|.+++.....
T Consensus 128 DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 128 DPPFFN-GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred CcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 888753 34455566554 4789999988876543
No 158
>PRK03612 spermidine synthase; Provisional
Probab=99.18 E-value=8.4e-11 Score=110.07 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHH--HHHh---CC--CCeEEEEccccCCcc--CCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQ--CRVL---EL--QNVEIIVADISTFEM--EAS 130 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~--~~~~---~~--~~v~~~~~d~~~~~~--~~~ 130 (291)
.+++.+|||||||+|..+..+++. +. .+|+++|+++++++.++++ +... .. ++++++.+|..+... +++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 356789999999999999999864 45 7999999999999999983 2221 12 479999999988532 278
Q ss_pred ccEEEEccccccccc-----HHHHHHHHHhccccCeeEEEEee
Q 022864 131 YDRIYSIEMFEHMKN-----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
||+|+++......+. ..++++.+++.|||||+++++..
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 999999865433221 24689999999999999998753
No 159
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.17 E-value=6.4e-10 Score=89.80 Aligned_cols=109 Identities=18% Similarity=0.234 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCE---------EEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEc
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCK---------ITGICNSKTQKEFIEEQCRVLELQ-NVEIIVA 120 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~---------v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~ 120 (291)
+...++......++..|||.-||+|++.++.+...+... ++|+|+++++++.+++|++..++. .+.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 344556666778899999999999999999887654555 899999999999999999998884 5899999
Q ss_pred cccCCccC-CCccEEEEccccccc-c-------cHHHHHHHHHhcccc
Q 022864 121 DISTFEME-ASYDRIYSIEMFEHM-K-------NYQNLLKKISKWMKE 159 (291)
Q Consensus 121 d~~~~~~~-~~~D~i~~~~~l~~~-~-------~~~~~l~~~~~~Lkp 159 (291)
|+.+++.. +.+|+|+++.++..- . -+..+++.+.++|++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99999844 889999999988643 1 135678888899999
No 160
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.16 E-value=4.1e-10 Score=95.70 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=104.8
Q ss_pred hHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcch----HHHHHHHHCC-----CCE
Q 022864 19 TSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGS----LSLYIAQKYS-----NCK 89 (291)
Q Consensus 19 ~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~-----~~~ 89 (291)
.+..+.+++.-..-...+|. .....+......+..++..... ...+|+-.||++|. ++..+.+..+ ..+
T Consensus 54 ~~e~~~~l~~ltin~T~FFR-~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~ 131 (268)
T COG1352 54 SEELQAFLDALTINVTEFFR-DPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK 131 (268)
T ss_pred HHHHHHHHHHhhhccchhcc-CcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE
Confidence 44445555542222234454 4566777777777777654333 57899999999995 5555666553 479
Q ss_pred EEEEcCCHHHHHHHHHHHHH-----h----------------C-------C-CCeEEEEccccCCc-cCCCccEEEEccc
Q 022864 90 ITGICNSKTQKEFIEEQCRV-----L----------------E-------L-QNVEIIVADISTFE-MEASYDRIYSIEM 139 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~-----~----------------~-------~-~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 139 (291)
|+|+|+|...++.|+.-.=. . + + +.|.|...|+.+.. ..+.||+|+|.++
T Consensus 132 I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV 211 (268)
T COG1352 132 ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV 211 (268)
T ss_pred EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcce
Confidence 99999999999998762100 0 1 1 34788888988866 5588999999999
Q ss_pred cccc--ccHHHHHHHHHhccccCeeEEEE
Q 022864 140 FEHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 140 l~~~--~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+.++ +...++++.++..|+|||+|++.
T Consensus 212 LIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 212 LIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 9999 45677999999999999999984
No 161
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.15 E-value=1.1e-09 Score=88.33 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=93.0
Q ss_pred CHHHHHHH-HHHHHHHHcCCCCCC-EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc
Q 022864 43 TLEDAEKA-MLELYCERSRLEDGH-TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA 120 (291)
Q Consensus 43 ~l~~~~~~-~~~~~~~~~~~~~~~-~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 120 (291)
+.++...+ .++.+.-.-...... +++|+|+|.|..++.++-.+|..+++.+|.+..-+...+......+++|++++++
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~ 105 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVING 105 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 45555543 444443222223333 8999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 121 DISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 121 d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+++.....+||+|++..+- ....+++-+...|++||.+++.
T Consensus 106 R~E~~~~~~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 106 RAEEPEYRESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -HHHTTTTT-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEE
T ss_pred eecccccCCCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEE
Confidence 99993334899999998554 6788899999999999998773
No 162
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.15 E-value=3e-10 Score=96.41 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--C----CeEEEEccccCC------ccC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--Q----NVEIIVADISTF------EME 128 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~----~v~~~~~d~~~~------~~~ 128 (291)
.+++..++|+|||-|+.++-.-+.. -..++|+|++...++.|+++.+.-.- + .+.|+.+|.... +++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 4678899999999999877665442 45899999999999999988764321 1 368888988653 223
Q ss_pred C-CccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 129 A-SYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 129 ~-~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
. +||+|-|..++|+. ...+.++.++.++|+|||+++-..|..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 3 49999999999876 456679999999999999999888765
No 163
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.15 E-value=3.8e-10 Score=91.22 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc-----cCCCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE-----MEASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~~D~i~ 135 (291)
-++.++||+.||+|.++.+.+.+. ..+|+.||.++..+..+++|++..+.. ++.++..|..... ...+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 468999999999999999999884 569999999999999999999998884 5899999976532 237899999
Q ss_pred EcccccccccHHHHHHHHH--hccccCeeEEEEeeccCC
Q 022864 136 SIEMFEHMKNYQNLLKKIS--KWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~~~~~~~~~ 172 (291)
+.+++..-.....+++.+. .+|+++|.+++.......
T Consensus 120 lDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 120 LDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp E--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred ECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 9998865533577888887 799999999998776533
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.14 E-value=3.9e-10 Score=96.50 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++.++++|+.+.+.+
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch
Confidence 456677778778888999999999999999999987 57999999999999999887754 34799999999987653
Q ss_pred CCccEEEEcccccc
Q 022864 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~i~~~~~l~~ 142 (291)
.+|.|+++.+++.
T Consensus 91 -~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 -EFNKVVSNLPYQI 103 (258)
T ss_pred -hceEEEEcCCccc
Confidence 5899999988753
No 165
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.13 E-value=5.2e-10 Score=100.46 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-CCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-EASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~i~~~~~l~ 141 (291)
++.+|||++||+|..++.++...+..+|+++|+++..++.+++|++.++++++.+..+|+..+.. ..+||+|+++..
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 35699999999999999998876445899999999999999999999998778899999987543 367999999753
Q ss_pred ccccHHHHHHHHHhccccCeeEEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.....++....+.+++||+++++
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34467888877889999999997
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.13 E-value=2.2e-09 Score=93.82 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEE-ccccCCc-----cCCCccEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIV-ADISTFE-----MEASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~v~~~~-~d~~~~~-----~~~~~D~i 134 (291)
++.++||||||+|.....++.+.++.+++|+|+++.+++.|++++..+ ++ +++.++. .|..... ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999988888887777899999999999999999999998 67 4677754 3332221 12689999
Q ss_pred EEccccccc
Q 022864 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+|+.+++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999998754
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.12 E-value=5.4e-10 Score=96.93 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
...++.+++.+...++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+. ++++++.+|+.+...
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 456777888888888999999999999999999987 67899999999999999998877663 589999999988654
Q ss_pred CCCccEEEEccccccc
Q 022864 128 EASYDRIYSIEMFEHM 143 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~ 143 (291)
..||+|+++.+++.-
T Consensus 100 -~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 -PYFDVCVANVPYQIS 114 (294)
T ss_pred -cccCEEEecCCcccC
Confidence 478999998777544
No 168
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.12 E-value=1.3e-09 Score=90.76 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
...++||||+|.|..+..++..+ .+|++.|.|+.|. .+.++.|. ++ .|..++... .+||+|.|.+++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr----~rL~~kg~---~v--l~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMR----WRLSKKGF---TV--LDIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHH----HHHHhCCC---eE--EehhhhhccCCceEEEeehhhhh
Confidence 46789999999999999999874 4899999999974 44445554 22 233333322 6899999999999
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
...++..+++.+++.|+|+|+++++..-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999987653
No 169
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.12 E-value=2.8e-09 Score=89.86 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCcc----CCCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEM----EASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~----~~~~D~i 134 (291)
....+||||.||.|..........|. .+|...|.|+..++..++.+++.|+.++ +|.++|+.+... ....+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999988888876 7999999999999999999999999765 999999988531 1457999
Q ss_pred EEccccccccc---HHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKN---YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+.++.++.++| ....+..+.+++.|||+++..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 99999999977 456788999999999998763
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.12 E-value=1.1e-09 Score=92.37 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST 124 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 124 (291)
.+.+.+..+++. .+..+|||||+++|..+.+++... ++.+|+.+|.+++..+.|+++++..|+ ++|+++.+|+.+
T Consensus 66 ~~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 66 DEGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 334455555543 346799999999999999999765 467999999999999999999999997 689999999877
Q ss_pred Ccc--------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 125 FEM--------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 125 ~~~--------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
... .++||+|+....= ..+...++.+.+.|+|||++++..
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence 421 1589999997542 456778888999999999988743
No 171
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.11 E-value=3.4e-10 Score=97.12 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCcc----CCCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEM----EASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~----~~~~D~i~~ 136 (291)
.+.+|||+-|=+|+++...+... ..+|+.||.|..+++.+++|+..+++ ++++++..|+.++.. .++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 47899999999999999987541 34899999999999999999999997 479999999987432 278999999
Q ss_pred cccccc------cccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 137 IEMFEH------MKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
.++-.. ..++..++..+.++|+|||.|++++..+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 875321 1467889999999999999998876643
No 172
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=8.8e-10 Score=95.62 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=94.5
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCccC-CCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFEME-ASY 131 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~~~-~~~ 131 (291)
.++......+|..|||--||||++.+.+.-. |++++|+|++..|++-++.|.+..+++...+... |+..++++ ..+
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~v 265 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSV 265 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCcc
Confidence 3444456788999999999999999998755 9999999999999999999999988766666655 99999887 459
Q ss_pred cEEEEccccccc-----cc----HHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHM-----KN----YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~-----~~----~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|.|++..+..-- .. +.++++.+.++||+||++++..+
T Consensus 266 daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 266 DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999998876432 11 57799999999999999999776
No 173
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.11 E-value=4.9e-10 Score=96.70 Aligned_cols=103 Identities=28% Similarity=0.421 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
+-.++.|||+|||+|.++...|+.+ ..+|++||.|.-+ +.|.+.+..+++++ |+++.+.+++...| ++.|+|+|-.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 4578999999999999999999875 6799999986655 99999999999954 89999999998877 9999999966
Q ss_pred ccccc---ccHHHHHHHHHhccccCeeEEE
Q 022864 139 MFEHM---KNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 139 ~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+=+.+ .=+..++-.=-+.|+|||.++=
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44333 1133444444589999998753
No 174
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.10 E-value=4.9e-10 Score=96.64 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
..++.+++.+...++.+|||+|||+|.++..++++. .+|+|+|+++.+++.+++++.. +++.++++|+.+++.+.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 455677777778888999999999999999999884 4999999999999999886642 48999999999986542
Q ss_pred C-ccEEEEcccccccccHHHHHHHHH
Q 022864 130 S-YDRIYSIEMFEHMKNYQNLLKKIS 154 (291)
Q Consensus 130 ~-~D~i~~~~~l~~~~~~~~~l~~~~ 154 (291)
- +|.|+++.++..- ..++.++.
T Consensus 104 ~~~~~vv~NlPY~is---s~ii~~~l 126 (272)
T PRK00274 104 LQPLKVVANLPYNIT---TPLLFHLL 126 (272)
T ss_pred cCcceEEEeCCccch---HHHHHHHH
Confidence 2 5899998776432 34444444
No 175
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.7e-09 Score=98.33 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcccc
Q 022864 44 LEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIS 123 (291)
Q Consensus 44 l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~ 123 (291)
-......++..+++.+...++.+|||+-||.|.++..++++ ..+|+|+|+++++++.|+++++.++++|+.|+.++.+
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae 351 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAE 351 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHH
Confidence 34455678888888888888999999999999999999976 7799999999999999999999999988999999999
Q ss_pred CCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 124 TFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 124 ~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++... ..+|.|+...+=.... ..+++.+. .++|..+++++.
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCCC--HHHHHHHH-hcCCCcEEEEeC
Confidence 97544 4789999987765443 24444444 467888888754
No 176
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.08 E-value=1.8e-09 Score=96.45 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
..++..+++.+...+ .+|||+|||+|.++..+++.. .+|+|||+++.+++.++++++.++++++.++.+|+.++...
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 445556656554333 479999999999999999874 59999999999999999999999988899999999774321
Q ss_pred -----------------CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -----------------ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -----------------~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..||+|+...+-..+ ...+++.+.+ |+++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL--DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCCC--cHHHHHHHHc---CCcEEEEEc
Confidence 137999998884322 3455565554 777777754
No 177
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.07 E-value=2.8e-09 Score=95.57 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM- 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~- 127 (291)
+.+++.+.+.+... +.+|||++||+|.++..+++. ..+|+|||.++.+++.+++|+..++++++.++.+|+.+...
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 45555665554432 357999999999999998876 45999999999999999999999998889999999977421
Q ss_pred ----------------CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 128 ----------------EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 128 ----------------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+||+|+...+-..+ ...+++.+.+ |+++++++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL--DDETLKLVQA---YERILYISC 320 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCCC--cHHHHHHHHc---cCCEEEEEe
Confidence 1258999999885322 3556666654 677776654
No 178
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.06 E-value=7.6e-10 Score=90.30 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccCCCccEEEEccc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..++.+|+|+.||.|.+++.+++..++..|+++|++|..++.++++++.++++ ++..+++|..++.....+|.|+++.+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46789999999999999999998655789999999999999999999999984 58999999999876688999999765
Q ss_pred ccccccHHHHHHHHHhccccCeeEE
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
-. ...++..+.+++++||++-
T Consensus 179 ~~----~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ES----SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SS----GGGGHHHHHHHEEEEEEEE
T ss_pred HH----HHHHHHHHHHHhcCCcEEE
Confidence 43 2357777889999999864
No 179
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=8.2e-10 Score=90.25 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----C----------------------
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----Q---------------------- 113 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~---------------------- 113 (291)
...+..+|||||..|.++..+++.+....|.|+|+++..|..|+++.+..-- .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 3467899999999999999999998566899999999999999887643110 0
Q ss_pred --------Ce-------EEEEccccCCccCCCccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEE
Q 022864 114 --------NV-------EIIVADISTFEMEASYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 114 --------~v-------~~~~~d~~~~~~~~~~D~i~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
++ .+...|+.+. ....||+|+|..+-.|+ ..+..+++++.++|.|||+|++.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 11 1111222211 12679999998876555 45789999999999999999883
No 180
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.04 E-value=1.5e-09 Score=93.38 Aligned_cols=105 Identities=15% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCcch----HHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHH------------------HH-----hC
Q 022864 63 DGHTVLDVGCGWGS----LSLYIAQKYS----NCKITGICNSKTQKEFIEEQC------------------RV-----LE 111 (291)
Q Consensus 63 ~~~~vLDiGcG~G~----~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~------------------~~-----~~ 111 (291)
+..+|+..||.+|. ++..+.+..+ ..+|+|+|+|+.+++.|++.. .. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999996 4444444321 368999999999999998741 00 01
Q ss_pred -------C-CCeEEEEccccCCcc--CCCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEe
Q 022864 112 -------L-QNVEIIVADISTFEM--EASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 112 -------~-~~v~~~~~d~~~~~~--~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+ +.|.|...|+.+.+. .+.||+|+|.+++.|+ +...++++++.+.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1 358999999988543 3889999999999999 457889999999999999988743
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.04 E-value=2e-09 Score=83.15 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=112.1
Q ss_pred HHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCC
Q 022864 10 AKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNC 88 (291)
Q Consensus 10 ~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~ 88 (291)
.++..+|..-.|++.|++.....+ +..++. .-..+.++..++...+..|||+|.|+|-++..+.++. +..
T Consensus 4 ~~~~~f~~e~~F~k~wi~~PrtVG-aI~PsS--------s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~ 74 (194)
T COG3963 4 KLARKFDEEISFFKGWIDNPRTVG-AILPSS--------SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPE 74 (194)
T ss_pred HhhhhHHHHHHHHHHHhcCCceee-eecCCc--------HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCcc
Confidence 345567777889999998766553 233211 2334455566678889999999999999999998873 456
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-----cC-CCccEEEEcccccccc--cHHHHHHHHHhccccC
Q 022864 89 KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-----ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKED 160 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~Lkpg 160 (291)
.+++++.|++.+....+.. +.+.++.+|+.++. .. ..||.|+|.-++-.++ ...++++.+...|.+|
T Consensus 75 ~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 75 SLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred ceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 8999999999988877654 35678999998875 11 6799999998877663 4567999999999999
Q ss_pred eeEEEEeecc
Q 022864 161 TLLFVHHFCH 170 (291)
Q Consensus 161 G~l~~~~~~~ 170 (291)
|.++-.+.++
T Consensus 150 g~lvqftYgp 159 (194)
T COG3963 150 GPLVQFTYGP 159 (194)
T ss_pred CeEEEEEecC
Confidence 9998877764
No 182
>PRK04148 hypothetical protein; Provisional
Probab=99.04 E-value=7.4e-09 Score=78.39 Aligned_cols=105 Identities=15% Similarity=0.225 Sum_probs=75.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A 129 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~ 129 (291)
+.+.+.+....+.+|||+|||.|. ++..|++. +.+|+++|+++..++.++++ .++++.+|+.+.... +
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHh
Confidence 344455555567899999999996 88888866 88999999999977766553 368999999997766 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.+|+|.+..+- ++....+-++.+. -|.-+++...+.+
T Consensus 77 ~a~liysirpp---~el~~~~~~la~~--~~~~~~i~~l~~e 113 (134)
T PRK04148 77 NAKLIYSIRPP---RDLQPFILELAKK--INVPLIIKPLSGE 113 (134)
T ss_pred cCCEEEEeCCC---HHHHHHHHHHHHH--cCCCEEEEcCCCC
Confidence 89999997654 3344444444442 3556666555443
No 183
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.04 E-value=1.7e-09 Score=95.81 Aligned_cols=159 Identities=21% Similarity=0.302 Sum_probs=123.4
Q ss_pred hhHHHhhcCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC
Q 022864 8 DKAKEQHYELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN 87 (291)
Q Consensus 8 ~~~~~~~yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~ 87 (291)
...+...|+...++|...|+..++.+. +... ....+...+.-...+-+....++..++|+|||.|....+++.. ..
T Consensus 58 ~e~~~~~y~~~~dl~~~~w~~~~h~~~--~~e~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f-~~ 133 (364)
T KOG1269|consen 58 PEQIAKYYNNSTDLYERNWGQSFHFGR--IPEG-NSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF-KK 133 (364)
T ss_pred chHHHHHhcccchhhhhhhccchhccC--ccch-hHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh-cc
Confidence 355778999999999999998776632 2211 1222222222222223345667889999999999999999865 37
Q ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 88 CKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 88 ~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+.++|+|.++..+..+........++ +..++.+|+...+++ ..||.+.+..+..|.++...+++++.++++|||+++.
T Consensus 134 ~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 134 AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 89999999999998888887777773 466688899888777 8999999999999999999999999999999999988
Q ss_pred Eeecc
Q 022864 166 HHFCH 170 (291)
Q Consensus 166 ~~~~~ 170 (291)
.....
T Consensus 214 ~e~i~ 218 (364)
T KOG1269|consen 214 KEWIK 218 (364)
T ss_pred HHHHH
Confidence 66654
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.03 E-value=1.8e-09 Score=92.20 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
-.++.|||+|||+|.++...++.. ..+|++|+. .+|.++|++..+.+.+ ++|.++.+-+++...+++.|+|++-.+=
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 367899999999999999988774 579999998 5788999998888776 6899999999999989999999986543
Q ss_pred ccc--ccHHHHHHHHHhccccCeeEEEE
Q 022864 141 EHM--KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~--~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.-+ +..-+..-..++.|||.|.++-.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 222 22222333456999999997643
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.02 E-value=5.6e-09 Score=89.21 Aligned_cols=99 Identities=18% Similarity=0.324 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.++..++.+|||+|||+|.++..++++. ..|+++|+++.+++.+++++.. .+++.++.+|+...+.+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh
Confidence 3556777777788889999999999999999999884 4799999999999998877643 34799999999987654
Q ss_pred CCcc---EEEEcccccccccHHHHHHHHHh
Q 022864 129 ASYD---RIYSIEMFEHMKNYQNLLKKISK 155 (291)
Q Consensus 129 ~~~D---~i~~~~~l~~~~~~~~~l~~~~~ 155 (291)
.+| +|+++.+++. ...++.++..
T Consensus 91 -~~d~~~~vvsNlPy~i---~~~il~~ll~ 116 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYNI---SSPLIFKLLE 116 (253)
T ss_pred -HcCCcceEEEcCChhh---HHHHHHHHhc
Confidence 456 8888877642 2345555544
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.01 E-value=2.9e-09 Score=99.36 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHHHcC-------CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe
Q 022864 43 TLEDAEKAMLELYCERSR-------LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV 115 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~-------~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v 115 (291)
.+.+.|.+.++....... ...+..+||||||.|.+...+|..+|...++|+|+....+..+.+.+...+++|+
T Consensus 320 ~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~ 399 (506)
T PRK01544 320 SLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNF 399 (506)
T ss_pred CCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeE
Confidence 566677666655443332 2346799999999999999999999999999999999999999998888889899
Q ss_pred EEEEccccCCc--c-CCCccEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 116 EIIVADISTFE--M-EASYDRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 116 ~~~~~d~~~~~--~-~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++..|+..+. . ++++|.|+.+.+-.|.+. ...+++.+.+.|||||.+.+.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 400 LLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 99888875432 2 378999999988777632 36799999999999999998664
No 187
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=5.9e-09 Score=85.54 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=87.4
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCC-ccEEEEcccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEAS-YDRIYSIEMFEH 142 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~i~~~~~l~~ 142 (291)
+.+++|||+|.|..++.++-.+|..+|+.+|....-+...++...+.+++|++++++.++++....+ ||+|+|..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 5899999999999999999888999999999999999999999999999899999999999875544 9999998544
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+...+++-+...+|+||.+++
T Consensus 146 --~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 --SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --chHHHHHHHHHhcccCCcchh
Confidence 677888889999999998754
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.00 E-value=7.6e-09 Score=95.06 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--CCCccEEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--EASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~i~~ 136 (291)
+..++.+|||++||+|+-+..+++... ...|+++|+++.-++.++++++..|+.++.+...|...+.. +..||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 567899999999999999999998753 35899999999999999999999999889999999887532 267999997
Q ss_pred ccccccc------c----------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 137 IEMFEHM------K----------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 137 ~~~l~~~------~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
..+.... + -..++|..+.+.|||||+|+-++++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 5543211 1 13668999999999999998887764
No 189
>PLN02823 spermine synthase
Probab=98.96 E-value=9.8e-09 Score=90.52 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--CCccEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--ASYDRIY 135 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~~~D~i~ 135 (291)
+...+||.||+|.|..++++.+..+..+|++||+++++++.+++.+...+ .++++++.+|...+... ++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45679999999999999999876556789999999999999998875432 25899999999886432 7899999
Q ss_pred Ecccccc--c-c---cHHHHHH-HHHhccccCeeEEEEe
Q 022864 136 SIEMFEH--M-K---NYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~--~-~---~~~~~l~-~~~~~LkpgG~l~~~~ 167 (291)
+...-.. . . -..++++ .+.+.|+|||+++++.
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8742110 0 0 1346787 8999999999988754
No 190
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.95 E-value=4.1e-09 Score=92.86 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH-------CCCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK-------YSNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVA 120 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~ 120 (291)
...+.++..+...++.+|+|.+||+|.+...+.+. .+..+++|+|+++..+..++-++.-.+. .+..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 34445555567778889999999999998888763 2578999999999999999887766665 23468888
Q ss_pred cccCCccC---CCccEEEEccccccc--c-------------------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 121 DISTFEME---ASYDRIYSIEMFEHM--K-------------------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 121 d~~~~~~~---~~~D~i~~~~~l~~~--~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|....+.. .+||+|+++.++... . .--.++..+.+.|++||++.+..|..
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 87664432 589999999987544 0 01247899999999999988877753
No 191
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.7e-08 Score=79.05 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
...-+||||||+|-.+..|++.. |++.+.++|++|.+.+..++.++.++. +++.++.|+.+--.+++.|+++.+.++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcC
Confidence 36789999999999999998774 677899999999999999998888877 7899999998855458999999988653
Q ss_pred ccc-----------------c----HHHHHHHHHhccccCeeEEEEeecc
Q 022864 142 HMK-----------------N----YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 142 ~~~-----------------~----~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
--+ + .++++..+-..|.|.|++++.....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 221 1 3567777888999999999876543
No 192
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.94 E-value=2e-08 Score=80.23 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCC--CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 50 AMLELYCERSRL--EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
+.-..++..+.. -.+.++||+-+|+|.++.+.+.++ ...++.||.+...+..+++|.+..++ .++.++..|.....
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 333445555543 578999999999999999999985 67999999999999999999998885 47889999988542
Q ss_pred --cC--CCccEEEEccccccc-ccHHHHHHH--HHhccccCeeEEEEeecc
Q 022864 127 --ME--ASYDRIYSIEMFEHM-KNYQNLLKK--ISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 --~~--~~~D~i~~~~~l~~~-~~~~~~l~~--~~~~LkpgG~l~~~~~~~ 170 (291)
.. .+||+|+...+++.- -+....+.. -..+|+|+|.+++.....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 12 359999999999721 222233333 457899999999976544
No 193
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=1.2e-09 Score=88.45 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
+....++|||||.|.....+.... -.+++-+|.|..|++.++. +...++ .+....+|-+.+++. .++|+|+++..+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~-~qdp~i-~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRD-AQDPSI-ETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhc-cCCCce-EEEEEecchhcccccccchhhhhhhhhh
Confidence 345689999999999999998774 4589999999999887754 223333 466777888888877 899999999999
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
||+.+++.-+.+++..|||+|.++-+..+..+
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcccc
Confidence 99999999999999999999999887766544
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.91 E-value=6.7e-09 Score=89.15 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcC---CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEcc
Q 022864 49 KAMLELYCERSR---LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVAD 121 (291)
Q Consensus 49 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d 121 (291)
.....+++..+. .+..++||-||.|.|..++.+.+..+-.+++.||+++..++.+++.+.... -+++.++..|
T Consensus 59 e~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 59 EFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred hHHHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 334444444432 233469999999999999999988767899999999999999999886654 3689999999
Q ss_pred ccCCccC--CCccEEEEcccccccc----cHHHHHHHHHhccccCeeEEEE
Q 022864 122 ISTFEME--ASYDRIYSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 122 ~~~~~~~--~~~D~i~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..++... .+||+|++...-..-+ ....+++.+++.|+++|+++.+
T Consensus 139 g~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 139 GVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9887544 5799999865443111 2378999999999999999987
No 195
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.91 E-value=5.7e-09 Score=84.18 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=66.4
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-
Q 022864 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME- 128 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~- 128 (291)
-++.+++.+.. +++..|-|+|||.+.++..+.+ +.+|+..|+-+. +-.++.+|+...|.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---------------n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---------------NPRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---------------STTEEES-TTS-S--T
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---------------CCCEEEecCccCcCCC
Confidence 35566666554 3467999999999999866542 468999998543 224678999999887
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+..|++|++.+|.. .++..++.++.|+|||||.|.|.....+
T Consensus 121 ~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp T-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred CceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 89999999877754 4789999999999999999999887543
No 196
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.9e-09 Score=79.52 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
++..+-...+.-.|++++|+|||.|-++...+ .+....|.|+|+++++++.+.+|+.+..+ ++++.++|+.+..+. +
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g 113 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCC
Confidence 44444455565679999999999999996554 33356899999999999999999998877 789999999998777 8
Q ss_pred CccEEEEccccccc
Q 022864 130 SYDRIYSIEMFEHM 143 (291)
Q Consensus 130 ~~D~i~~~~~l~~~ 143 (291)
.||.++.+.++..-
T Consensus 114 ~fDtaviNppFGTk 127 (185)
T KOG3420|consen 114 IFDTAVINPPFGTK 127 (185)
T ss_pred eEeeEEecCCCCcc
Confidence 89999999988654
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-08 Score=82.02 Aligned_cols=111 Identities=24% Similarity=0.244 Sum_probs=85.4
Q ss_pred HHHHHHHHcC--CCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhC--------C--CCeE
Q 022864 51 MLELYCERSR--LEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLE--------L--QNVE 116 (291)
Q Consensus 51 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--------~--~~v~ 116 (291)
+...+++.+. +.||.+.||+|+|+|.++..++... ++..++|||.-++.++.++++..+.- + .++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 3344444444 6799999999999999999888553 34556999999999999999886542 2 3578
Q ss_pred EEEccccCCccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 117 IIVADISTFEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 117 ~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
++.+|......+ .+||.|.+...- .++-+++...|+|||.+++-.
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 999999987655 899999998444 345566788899999998843
No 198
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.88 E-value=6.1e-09 Score=86.84 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC---
Q 022864 50 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST--- 124 (291)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~--- 124 (291)
.++..+++..+. .++.+|||+|||+|.++..+++.. ..+|+|+|+++.|+.... +.. +++ .+...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l---~~~--~~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKL---RQD--ERVKVLERTNIRYVTP 134 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHH---hcC--CCeeEeecCCcccCCH
Confidence 356667776654 478899999999999999999872 468999999998876521 111 122 233334442
Q ss_pred --CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 --FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 --~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+ ..+|+++++. ..++..+.++|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEE
Confidence 2211 3455555432 3358889999999 76554
No 199
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.86 E-value=3.7e-08 Score=87.93 Aligned_cols=105 Identities=25% Similarity=0.356 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 45 EDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
......+++.+++.++..++ +|||+-||.|.++..++.. ..+|+|||+++.+++.|+++++.++++|++|+.++.++
T Consensus 179 ~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 33446778888888887666 8999999999999999987 67999999999999999999999999999999987765
Q ss_pred Ccc----------------C-CCccEEEEcccccccccHHHHHHHHH
Q 022864 125 FEM----------------E-ASYDRIYSIEMFEHMKNYQNLLKKIS 154 (291)
Q Consensus 125 ~~~----------------~-~~~D~i~~~~~l~~~~~~~~~l~~~~ 154 (291)
+.. . ..+|+|+..++=..+. ..+++.+.
T Consensus 256 ~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~~ 300 (352)
T PF05958_consen 256 FAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKVIELIK 300 (352)
T ss_dssp CCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHHHHHHH
T ss_pred hhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHHHHHHh
Confidence 321 1 2589999988766554 33444443
No 200
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=3.6e-08 Score=86.27 Aligned_cols=106 Identities=25% Similarity=0.309 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
.+|.+|||.-+|.|.+++.+|... ..+|+++|++|.+++.+++|++.+++.+ +..+++|..+.... ..+|-|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 459999999999999999999874 3349999999999999999999999954 89999999998877 88999999754
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
- +...++....+.+++||++.+....+..
T Consensus 266 ~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K----SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred C----cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 4 5567888888999999999888776654
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.84 E-value=7.5e-09 Score=81.29 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=57.5
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC---CC-ccEEEEccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME---AS-YDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~---~~-~D~i~~~~~ 139 (291)
..|+|+.||.|+.++.+|+. ..+|+++|+++..++.++.|++..|+ ++|.++++|+.+.... .. +|+|+++.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999987 56899999999999999999999997 5899999999986533 12 899999876
Q ss_pred cc
Q 022864 140 FE 141 (291)
Q Consensus 140 l~ 141 (291)
..
T Consensus 79 WG 80 (163)
T PF09445_consen 79 WG 80 (163)
T ss_dssp BS
T ss_pred CC
Confidence 53
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.7e-08 Score=83.80 Aligned_cols=90 Identities=19% Similarity=0.364 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
...++.+++.....++.+|||||+|.|.++..|+++ +.+|+++|+++.+++..++... ..++++++.+|+.....+
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 345788888888888999999999999999999998 7789999999999998888765 235899999999998877
Q ss_pred C--CccEEEEcccccc
Q 022864 129 A--SYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~--~~D~i~~~~~l~~ 142 (291)
. .++.|+++-+.+-
T Consensus 92 ~l~~~~~vVaNlPY~I 107 (259)
T COG0030 92 SLAQPYKVVANLPYNI 107 (259)
T ss_pred hhcCCCEEEEcCCCcc
Confidence 4 7899999987743
No 203
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.84 E-value=4.3e-08 Score=87.76 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=86.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
+.+|||+.||+|..++.++.+.++ .+|+++|+++..++.+++|++.++++++.+++.|+..+... .+||+|.... +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 469999999999999999987533 58999999999999999999998887789999999886433 6799999976 4
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEee
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.....++..+.+.+++||.+++...
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 3446789999999999999999743
No 204
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.83 E-value=1.4e-08 Score=87.67 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+++++++.+...++..++|.+||.|+.+..+++..+ ..+|+|+|.++.+++.++++... .+++.++++|+.++...
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEV 83 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHH
Confidence 3677888888888889999999999999999999874 58999999999999999988755 35899999999986422
Q ss_pred --C---CccEEEEccc
Q 022864 129 --A---SYDRIYSIEM 139 (291)
Q Consensus 129 --~---~~D~i~~~~~ 139 (291)
. ++|.|++..-
T Consensus 84 l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 84 LAEGLGKVDGILLDLG 99 (296)
T ss_pred HHcCCCccCEEEECCC
Confidence 2 7999998653
No 205
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=6.5e-08 Score=85.28 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC--------------------------------C-------E
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN--------------------------------C-------K 89 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--------------------------------~-------~ 89 (291)
..+...++...+..++..++|--||+|++.++.|...++ + .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 345566677778888899999999999999999876431 1 2
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEccccccc-------c-cHHHHHHHHHhcccc
Q 022864 90 ITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHM-------K-NYQNLLKKISKWMKE 159 (291)
Q Consensus 90 v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~-------~-~~~~~l~~~~~~Lkp 159 (291)
++|+|+++.+++.|+.|++..|+ +.|.|.++|+.++..+ +.+|+||||.+..-- . -+..+.+.+++.++-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC
Confidence 77999999999999999999999 4699999999999877 899999999987422 1 234455566677777
Q ss_pred CeeEEEEee
Q 022864 160 DTLLFVHHF 168 (291)
Q Consensus 160 gG~l~~~~~ 168 (291)
-+..++.+.
T Consensus 337 ws~~v~tt~ 345 (381)
T COG0116 337 WSRYVFTTS 345 (381)
T ss_pred CceEEEEcc
Confidence 777777543
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.83 E-value=1.8e-08 Score=85.48 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC----CCCeEEEEccccCCccC--C-CccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----LQNVEIIVADISTFEME--A-SYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~~--~-~~D~i 134 (291)
+.+.+||-||.|.|..+..+.+..+..+|++||+++..++.+++.+.... -++++++.+|...+... + +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46789999999999999999866445799999999999999999776532 25899999999886433 5 89999
Q ss_pred EEcccccccc----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFEHMK----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+....-...+ -...+++.++++|+|||++++...+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 9865432111 13689999999999999999877443
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.80 E-value=3.5e-08 Score=82.21 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 128 (291)
..++.++++.+++++..|||+|.|||.++..|.+. +++|+++++++.|+....++...... .+++++.+|....+.
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-
Confidence 35678889999999999999999999999999998 89999999999999999988865554 369999999998764
Q ss_pred CCccEEEEccccc
Q 022864 129 ASYDRIYSIEMFE 141 (291)
Q Consensus 129 ~~~D~i~~~~~l~ 141 (291)
..||.+|++-++.
T Consensus 122 P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 PRFDGCVSNLPYQ 134 (315)
T ss_pred cccceeeccCCcc
Confidence 3689999977664
No 208
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.9e-07 Score=83.46 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=93.2
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CC
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----AS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~ 130 (291)
..++..++.+|||++++.|+=+.++++..+ +..|+++|.++.-+...+++++..|+.++..+..|....+.. .+
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 446788999999999999999999998754 356799999999999999999999998888888887765322 35
Q ss_pred ccEEEEccccccc------cc----------------HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIEMFEHM------KN----------------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
||.|++..+.... ++ ..+++....+.|||||.|+.++++..
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9999986643221 11 45699999999999999999887653
No 209
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.78 E-value=7e-08 Score=79.23 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHH-------HhCC--CCeEEEE
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCR-------VLEL--QNVEIIV 119 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-------~~~~--~~v~~~~ 119 (291)
...+..+++.+++.++...+|||||.|......+...+-.+++|||+.+...+.|+...+ ..|. .++.+..
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 345667778888899999999999999998888866634469999999998887765332 2233 3688889
Q ss_pred ccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 120 ADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 120 ~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+|+.+.+.. ...|+|++++..- -++....+.+....||+|.+++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 998774321 4679999987652 24556666777788999888654
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.77 E-value=1.2e-07 Score=92.16 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC----C--------------------------------------
Q 022864 50 AMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY----S-------------------------------------- 86 (291)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~----~-------------------------------------- 86 (291)
.+...++...+. .++..++|.+||+|++.++.+... |
T Consensus 176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 344556666666 568899999999999999887531 1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC---CCccEEEEccccccc----ccHHHHHHHHHhccc
Q 022864 87 NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME---ASYDRIYSIEMFEHM----KNYQNLLKKISKWMK 158 (291)
Q Consensus 87 ~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~~----~~~~~~l~~~~~~Lk 158 (291)
..+++|+|+++.+++.|++|+...|+. .+.+.++|+.+++.+ +++|+|+++.++..- .+...+...+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 136999999999999999999999984 589999999987544 469999999987533 233445455544444
Q ss_pred ---cCeeEEEEeec
Q 022864 159 ---EDTLLFVHHFC 169 (291)
Q Consensus 159 ---pgG~l~~~~~~ 169 (291)
+|+.+++.+..
T Consensus 336 ~~~~g~~~~llt~~ 349 (702)
T PRK11783 336 QQFGGWNAALFSSS 349 (702)
T ss_pred HhCCCCeEEEEeCC
Confidence 88888776654
No 211
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.7e-07 Score=78.09 Aligned_cols=114 Identities=20% Similarity=0.226 Sum_probs=93.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME- 128 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~- 128 (291)
+..++..+...||.+|||-|.|+|.++..+++.. |..+++.+|....-.+.|.+.+++.++ +++++..-|+...-+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5667778899999999999999999999999874 678999999999999999999999998 5899999999885443
Q ss_pred --CCccEEEEcccccccccHHHHHHHHHhccccCe-eEEEEeecc
Q 022864 129 --ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDT-LLFVHHFCH 170 (291)
Q Consensus 129 --~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~ 170 (291)
..+|.|+.. ++.+...+..+.++||.+| +++-.+|+.
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 568888774 5566777888888999877 555444443
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.73 E-value=3.9e-08 Score=81.26 Aligned_cols=98 Identities=17% Similarity=0.293 Sum_probs=77.0
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-C
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-A 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~ 129 (291)
++.+++.+.. +....|-|+|||.+.++. .. ...|+.+|+-+. +-+++.+|+...|.+ +
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV---------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---------------CCceeeccccCCcCccC
Confidence 5566666544 345688899999988765 22 457999998432 456788999998877 8
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.|++|++.++.. .++..++.++.|+|+|||.++|.....
T Consensus 228 svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred cccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh
Confidence 9999998877643 588999999999999999999987754
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.71 E-value=1.2e-07 Score=80.42 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=80.9
Q ss_pred HHHHHHHH---cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--CC--CCeEEEEcccc
Q 022864 51 MLELYCER---SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--EL--QNVEIIVADIS 123 (291)
Q Consensus 51 ~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~ 123 (291)
..++++-. +..+..++||=||.|.|..++++.+. | .+|+.||+++++++.+++..... +. ++++++.. +.
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~ 133 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL 133 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence 44444433 24567789999999999999999965 4 49999999999999999855432 22 47777652 22
Q ss_pred CCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+ ...++||+|++...+ ...+.+.++++|+|||+++.+.-
T Consensus 134 ~-~~~~~fDVIIvDs~~-----~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 134 D-LDIKKYDLIICLQEP-----DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred h-ccCCcCCEEEEcCCC-----ChHHHHHHHHhcCCCcEEEECCC
Confidence 1 112689999987542 36788999999999999998654
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=8.2e-08 Score=76.27 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCcc
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D 132 (291)
+.+.++-..-.+++|||+|+|+|..++..+... ...|+..|+.|..+..+.-|++.+|. ++.+...|.-. .+..||
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~D 144 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFD 144 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCccee
Confidence 344444455678999999999999999988764 56899999999999999889999887 78999988877 347899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
+++...++..-....+++....++...|-.+++.++.+...+
T Consensus 145 l~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 145 LLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred EEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCc
Confidence 999999887666667777744455455666777777665544
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.71 E-value=2.6e-08 Score=80.68 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=70.8
Q ss_pred HHHHHHHHcC-CC--CCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 51 MLELYCERSR-LE--DGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 51 ~~~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
++.++.++.+ .. ++.+|||+||++|+++..+.++. +..+|+|+|+.+. ...+++.++++|+.+..
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhh
Confidence 5667777666 44 45999999999999999999875 4589999999876 12235666666665421
Q ss_pred ---------cC--CCccEEEEccccccc-----------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 ---------ME--ASYDRIYSIEMFEHM-----------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 ---------~~--~~~D~i~~~~~l~~~-----------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. +++|+|+|..+.... .-....+.-+.+.|+|||.+++..+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 11 489999998833222 12234555666789999999887664
No 216
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=9.6e-08 Score=86.31 Aligned_cols=140 Identities=20% Similarity=0.268 Sum_probs=95.4
Q ss_pred HHHHHhhCCCCCccc-cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHH
Q 022864 20 SFFKLVLGKYFKYSC-CYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKT 98 (291)
Q Consensus 20 ~~~~~~~~~~~~y~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~ 98 (291)
-.++.+++-+...|. ++|+.. ..+.+.....+-+.++.+++..+||+.||||.++..+++. -.+|+||+++++
T Consensus 343 ~I~E~l~~ltF~iSp~AFFQ~N----t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 343 YITESLLGLTFRISPGAFFQTN----TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPD 416 (534)
T ss_pred EEEeecCCeEEEECCchhhccC----cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChh
Confidence 445555555555665 455422 2233445556667788889999999999999999999976 679999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEEccccCCccC------CCcc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 99 QKEFIEEQCRVLELQNVEIIVADISTFEME------ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 99 ~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------~~~D-~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.++.|+.++..+|+.|++|+++-+++.-.. ..-+ +++...+=..+ ...+++.+++.-+|-=.++++.
T Consensus 417 aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl--h~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 417 AVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL--HMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred hcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcccc--cHHHHHHHHhccCccceEEEEc
Confidence 999999999999999999999977764322 2335 33343332211 1345555555544555555543
No 217
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.63 E-value=5.7e-07 Score=77.56 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~ 126 (291)
.+.+.++-..+..-.+.+|||+|||+|..+..+...++ -.+++++|.|+.+++.++..+...... ...+......+..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 44566666555555677999999999988777766664 348999999999999998876543221 1111111111111
Q ss_pred cCCCccEEEEccccccccc--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 127 MEASYDRIYSIEMFEHMKN--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.-...|+|++.++|..+++ ...+++.+.+.+++ .|++..++.+
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 1134599999999998865 33456666555555 8888777654
No 218
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.62 E-value=2.7e-08 Score=89.93 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEE---cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGI---CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
.-..+||+|||+|+++.+|.++ +..+..+ |..+.+++.|. +.|++- -+-..-...++++ ..||+|.|..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfal----eRGvpa-~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFAL----ERGVPA-MIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhh----hcCcch-hhhhhccccccCCccchhhhhccc
Confidence 3457899999999999999987 4443333 33334444443 345521 1111223456766 8999999998
Q ss_pred ccccc-ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 139 MFEHM-KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 139 ~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++... .+-.-+|-++-|+|+|||+++.+.+...
T Consensus 190 c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 190 CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 77655 3334578889999999999999776543
No 219
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.62 E-value=3.6e-08 Score=80.31 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=82.9
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCcc
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---~~~D 132 (291)
+..+.+.+|||.+.|-|..++..+++ |+ +|+.++.+++.++.|+-|-=..++ .++.++.+|+.++... ++||
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 34567999999999999999999988 66 999999999988877654322223 2579999999886433 7899
Q ss_pred EEEEccccccc-c--cHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHM-K--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~-~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|+-..+--.. . -..++.+++.++|||||.++-.+-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 99987643322 1 236789999999999999876543
No 220
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.59 E-value=7.9e-07 Score=77.02 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=91.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 133 (291)
.+...++.+|||++++.|+-+..+++... ...++++|+++.-+...++++++.|..++.....|....... ..||.
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 35678899999999999999999998864 579999999999999999999999998888888888876322 46999
Q ss_pred EEEccccccc------cc----------------HHHHHHHHHhcc----ccCeeEEEEeecc
Q 022864 134 IYSIEMFEHM------KN----------------YQNLLKKISKWM----KEDTLLFVHHFCH 170 (291)
Q Consensus 134 i~~~~~l~~~------~~----------------~~~~l~~~~~~L----kpgG~l~~~~~~~ 170 (291)
|+...+-... ++ ..++++.+.+.+ ||||+++-++.+.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 9985533211 11 356899999999 9999999988764
No 221
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.59 E-value=3e-07 Score=79.75 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=80.0
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
-...+|+|.|.|..+..+..++| +|-+++.+...+..+..... +.|..+.+|..+. .| +-|+|++..+++|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc----CCcceeccccccc-CC-CcCeEEEEeecccC
Confidence 47899999999999999999877 46677777766655555442 2478889999886 33 34799999999999
Q ss_pred --ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 144 --KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 144 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++..++|+++.+.|+|||.+++.+...+
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 4578899999999999999999876443
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.58 E-value=7.8e-08 Score=75.78 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=81.9
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc--
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH-- 142 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~-- 142 (291)
..+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+|.+-.|..++.++.+|+.+..+ +..|+|+|-..=..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 68999999999999988876 67999999999999999999888888899999999999877 67899988532111
Q ss_pred cccHHHHHHHHHhccccCeeEEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.+....+++.+...|+-++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 14456688888889999998764
No 223
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.58 E-value=2.1e-07 Score=78.68 Aligned_cols=118 Identities=23% Similarity=0.244 Sum_probs=77.5
Q ss_pred HHHHHHHHc--CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-----------------
Q 022864 51 MLELYCERS--RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE----------------- 111 (291)
Q Consensus 51 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----------------- 111 (291)
.+..+.+.. +...+.++||||||+-.....-+..+ -.+|+..|.++..++..++..+..+
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~ 120 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGK 120 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCC
Confidence 344444333 23457899999999865543333332 3589999999999987776553321
Q ss_pred ----------C-CCe-EEEEccccCCccC-------CCccEEEEccccccc----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 112 ----------L-QNV-EIIVADISTFEME-------ASYDRIYSIEMFEHM----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 112 ----------~-~~v-~~~~~d~~~~~~~-------~~~D~i~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+ ..| .++.+|+.+.++- .+||+|++..+++.. +.+...++++.++|||||.|++...
T Consensus 121 ~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 121 REKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 0 012 4777888874321 359999999999877 4567799999999999999998766
Q ss_pred c
Q 022864 169 C 169 (291)
Q Consensus 169 ~ 169 (291)
.
T Consensus 201 l 201 (256)
T PF01234_consen 201 L 201 (256)
T ss_dssp S
T ss_pred c
Confidence 3
No 224
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=1.2e-06 Score=71.57 Aligned_cols=112 Identities=13% Similarity=0.193 Sum_probs=89.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc-
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE- 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~- 126 (291)
..+..+++.. .+.++||||.=+|..+...|...| +.+|+++|++++..+.+.+..+..|. .+|+++++++.+..
T Consensus 63 ~fl~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 63 QFLQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 3455555543 467999999999999999888774 67999999999999999999998888 57999999887732
Q ss_pred ------cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 ------MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+.||+++...-= .++...++++.+++++||++++..
T Consensus 140 ~l~~~~~~~tfDfaFvDadK---~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVDADK---DNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHhcCCCCceeEEEEccch---HHHHHHHHHHHhhcccccEEEEec
Confidence 12789999986321 345678999999999999998854
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.52 E-value=2.7e-06 Score=65.92 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCcchHHHHHHH-----HCCCCEEEEEcCCHHHHHHHHHHHHHhC--C-CCeEEEEccccCCccCCCcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQ-----KYSNCKITGICNSKTQKEFIEEQCRVLE--L-QNVEIIVADISTFEMEASYD 132 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~-----~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~~~~~D 132 (291)
..+..+|+|+|||.|.++..|+. . ++.+|++||.++..++.+.++.+..+ . .++.+..+++.+.......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 36788999999999999999998 4 58899999999999999999988877 3 46777777776654345678
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++..+.-..+. ..+++...+ |+-..++.
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 888765443332 445555544 55554443
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.51 E-value=1.2e-06 Score=82.56 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCC--------CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----c-cC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYS--------NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----E-ME 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~-~~ 128 (291)
...+|||.|||+|.+...++...+ ...++|+|+++..+..++.++...+.-.+.+...|.... . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999998887642 157899999999999999887765521344555553321 1 11
Q ss_pred CCccEEEEccccccccc----------------------------------------------HHHHH-HHHHhccccCe
Q 022864 129 ASYDRIYSIEMFEHMKN----------------------------------------------YQNLL-KKISKWMKEDT 161 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~----------------------------------------------~~~~l-~~~~~~LkpgG 161 (291)
+.||+|++++++.-... +..++ +.+.+.|++||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 58999999998764310 01133 56789999999
Q ss_pred eEEEEeecc
Q 022864 162 LLFVHHFCH 170 (291)
Q Consensus 162 ~l~~~~~~~ 170 (291)
++.+..|..
T Consensus 191 ~~~~I~P~s 199 (524)
T TIGR02987 191 YVSIISPAS 199 (524)
T ss_pred EEEEEEChH
Confidence 999887764
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.48 E-value=2.9e-06 Score=72.80 Aligned_cols=104 Identities=16% Similarity=0.268 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
....+.+++.+...++..|||+|+|.|.++..|.+. +.+++++|+++...+..++... ..+++.++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccH
Confidence 456777888888889999999999999999999988 5899999999999888887655 235899999999998755
Q ss_pred C----CccEEEEcccccccccHHHHHHHHHhcccc
Q 022864 129 A----SYDRIYSIEMFEHMKNYQNLLKKISKWMKE 159 (291)
Q Consensus 129 ~----~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkp 159 (291)
. ....|+++-++ ++ ...++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 3 56688887666 33 24566666653333
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.47 E-value=5e-06 Score=72.85 Aligned_cols=116 Identities=6% Similarity=0.018 Sum_probs=82.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEE--EEccccCC-
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCRVLELQNVEI--IVADISTF- 125 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~--~~~d~~~~- 125 (291)
..+++.+ .++..|+|+|||.|.-+..|.+.. ...+++++|+|.++++.+.++......+.+.+ +++|+.+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 3444443 467799999999999877766543 24689999999999999998887444445544 78888663
Q ss_pred ---cc---CCCccEEEEcc-cccccc--cHHHHHHHHHh-ccccCeeEEEEeecc
Q 022864 126 ---EM---EASYDRIYSIE-MFEHMK--NYQNLLKKISK-WMKEDTLLFVHHFCH 170 (291)
Q Consensus 126 ---~~---~~~~D~i~~~~-~l~~~~--~~~~~l~~~~~-~LkpgG~l~~~~~~~ 170 (291)
+. .....+++..+ ++..++ ....+++++++ .|+|||.|++..-..
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 21 13356666654 676664 34578999999 999999999865443
No 229
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.45 E-value=3.7e-06 Score=71.10 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=91.4
Q ss_pred hHHHHHhhCCCCCccc---------cccCCCCCCHHHHHHHHHHHHHHHcCCC-CCCEEEEEcCCc--chHHHHHHHH-C
Q 022864 19 TSFFKLVLGKYFKYSC---------CYFSDASKTLEDAEKAMLELYCERSRLE-DGHTVLDVGCGW--GSLSLYIAQK-Y 85 (291)
Q Consensus 19 ~~~~~~~~~~~~~y~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~--G~~~~~la~~-~ 85 (291)
...|..+++..-+|.. ..+. ....+....+..+...++.+... .-...||||||- -.....+++. .
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P-~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~ 93 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAP-EIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA 93 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHST-THHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC
Confidence 6778888887766632 1111 01223333444555555554444 557999999993 3456666654 6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C--CCc-----cEEEEcccccccc---cHHHHH
Q 022864 86 SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E--ASY-----DRIYSIEMFEHMK---NYQNLL 150 (291)
Q Consensus 86 ~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~-----D~i~~~~~l~~~~---~~~~~l 150 (291)
|.++|+-||.+|-.+..++.......-....++++|+.+... . +-+ =.+++..++|+++ +...++
T Consensus 94 P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv 173 (267)
T PF04672_consen 94 PDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIV 173 (267)
T ss_dssp TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHH
T ss_pred CCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHH
Confidence 899999999999999998887765532238899999988420 0 223 3677888999983 588999
Q ss_pred HHHHhccccCeeEEEEeeccCCc
Q 022864 151 KKISKWMKEDTLLFVHHFCHKTF 173 (291)
Q Consensus 151 ~~~~~~LkpgG~l~~~~~~~~~~ 173 (291)
+.+++.|.||.+|+++..+....
T Consensus 174 ~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 174 ARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp HHHHCCS-TT-EEEEEEEB-TTS
T ss_pred HHHHHhCCCCceEEEEecCCCCC
Confidence 99999999999999988876543
No 230
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.41 E-value=5.2e-06 Score=67.92 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=77.4
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCcc
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYD 132 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D 132 (291)
.+.+.++.+||-+|..+|....+++.-. +...|++|+.|+.........++++ +|+-.+..|+.....- +..|
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EE
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhccccccc
Confidence 3467899999999999999998888764 4679999999999887777666655 3899899999874311 6899
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+|++.-+ +-.+.+-++.++...||+||.+++..-
T Consensus 146 vI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 146 VIFQDVA--QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 9998633 223445577788899999999988654
No 231
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.41 E-value=5.3e-06 Score=70.62 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---h----------------------------
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---L---------------------------- 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~---------------------------- 110 (291)
....+||--|||.|.++..++.+ |..+.|.|.|--|+-...-.... .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34689999999999999999988 88999999999986554332211 0
Q ss_pred ---------CCCCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 111 ---------ELQNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 111 ---------~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...++....+|+.+...+ ++||+|+....+...++.-..++.+.++|||||+.+=
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEe
Confidence 012466677777775433 5899999998888888999999999999999996543
No 232
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.40 E-value=7.5e-06 Score=63.73 Aligned_cols=104 Identities=22% Similarity=0.344 Sum_probs=73.7
Q ss_pred EEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC--CccCC--CccEEEEccccc
Q 022864 67 VLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST--FEMEA--SYDRIYSIEMFE 141 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~--~~D~i~~~~~l~ 141 (291)
++|+|||+|... .+....+. ..++++|+++.++..+.......+...+.+...|... .+... .||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 44433222 4899999999999885544333211116788888776 44443 799994444444
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
+.. ....+..+.+.|+|+|.+++.......
T Consensus 131 ~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 788999999999999999988776543
No 233
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.38 E-value=8.3e-06 Score=69.66 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=67.1
Q ss_pred CCEEEEEcCCcchHHHHHH-HH-CCCCEEEEEcCCHHHHHHHHHHHH-HhCC-CCeEEEEccccCCccC-CCccEEEEcc
Q 022864 64 GHTVLDVGCGWGSLSLYIA-QK-YSNCKITGICNSKTQKEFIEEQCR-VLEL-QNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la-~~-~~~~~v~~vD~s~~~~~~a~~~~~-~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
+.+|+=||||.=.++..+. ++ .++..|+++|++++.++.+++.++ ..++ .++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999877655544 33 356789999999999999998877 3444 4799999999887655 7899998765
Q ss_pred ccc-ccccHHHHHHHHHhccccCeeEEEE
Q 022864 139 MFE-HMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 139 ~l~-~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
... .-.+..+++.++.+.++||+.+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 443 2247889999999999999998885
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=98.37 E-value=2.3e-06 Score=71.53 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=74.5
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh------C--C-CCeEEEEcc
Q 022864 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL------E--L-QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~--~-~~v~~~~~d 121 (291)
+.+++.++++++. +|||+-+|+|..+..++.. |++|+++|-++......+++.... + + .+++++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 5667777888877 9999999999999999988 889999999999999988887763 2 2 468899999
Q ss_pred ccCCccC--CCccEEEEccccccc
Q 022864 122 ISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~~--~~~D~i~~~~~l~~~ 143 (291)
..++... ..||+|++..++.+-
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCCC
Confidence 8886432 579999999998765
No 235
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.37 E-value=1.6e-06 Score=67.21 Aligned_cols=60 Identities=28% Similarity=0.414 Sum_probs=53.7
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF 125 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 125 (291)
+++|+|||.|..+..+++.++..+|+++|+++.+.+.++++++.++++++.++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999999887789999999999999999999988877788888877764
No 236
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.37 E-value=3.4e-06 Score=73.58 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=71.7
Q ss_pred HHHHHHHHcC--------CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc
Q 022864 51 MLELYCERSR--------LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI 122 (291)
Q Consensus 51 ~~~~~~~~~~--------~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~ 122 (291)
++.+++.... ..+++++|||||++|+++..+.++ +.+|++||..+- ...... .++|.....|.
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l-----~~~L~~--~~~V~h~~~d~ 261 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPM-----AQSLMD--TGQVEHLRADG 261 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhc-----CHhhhC--CCCEEEEeccC
Confidence 4555555443 358999999999999999999988 779999996542 122222 24799999988
Q ss_pred cCCcc-CCCccEEEEcccccccccHHHHHHHHHhccccC
Q 022864 123 STFEM-EASYDRIYSIEMFEHMKNYQNLLKKISKWMKED 160 (291)
Q Consensus 123 ~~~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg 160 (291)
..+.+ .+++|.++|..+- .+.++.+-+.++|..|
T Consensus 262 fr~~p~~~~vDwvVcDmve----~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 262 FKFRPPRKNVDWLVCDMVE----KPARVAELMAQWLVNG 296 (357)
T ss_pred cccCCCCCCCCEEEEeccc----CHHHHHHHHHHHHhcC
Confidence 88765 4889999997554 5667777777777665
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=7.1e-06 Score=66.65 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 49 KAMLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
..++.++.++..+ .++.+|+|||+-+|+++..++++. ++..|+++|+.|- ...++|.++++|+....
T Consensus 30 a~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~ 98 (205)
T COG0293 30 AYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDED 98 (205)
T ss_pred HHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCcc
Confidence 3455666666543 678999999999999999999885 2345999999774 12347999999998853
Q ss_pred --------cC-CCccEEEEcccc--------ccc---ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 --------ME-ASYDRIYSIEMF--------EHM---KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 --------~~-~~~D~i~~~~~l--------~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. .++|+|+|...- .|. .-...+++-+...|+|||.+++..+-
T Consensus 99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 12 457999986533 222 11234667778899999999987763
No 238
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.29 E-value=3.3e-07 Score=74.09 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-----CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-----ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-----~~~D~i~~ 136 (291)
....|+|.-||.|+.++..+.+ +..|+++|++|.-+..|+.|++..|+ ++|+|+++|+.++... ..+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4568999999999999999988 66999999999999999999999999 5899999999986432 34668877
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+.....-.-...-+-.+...++|.|.-++
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~~~~f 200 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMGTKIF 200 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhHHHHH
Confidence 77665555455556667777777765433
No 239
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.29 E-value=2.6e-06 Score=69.39 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~ 139 (291)
..++|||||=+......- .+-..|+.||+++. .-.+.+.|+.+.+.+ ++||+|+++.+
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 479999999755543332 22457999999874 223567787776543 78999999999
Q ss_pred ccccccHH---HHHHHHHhccccCee-----EEEEeeccC
Q 022864 140 FEHMKNYQ---NLLKKISKWMKEDTL-----LFVHHFCHK 171 (291)
Q Consensus 140 l~~~~~~~---~~l~~~~~~LkpgG~-----l~~~~~~~~ 171 (291)
+.+++++. +.+.++.+.|+|+|. |++..|.+.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99998764 589999999999999 888877654
No 240
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=4.1e-07 Score=70.05 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CCCCeEEEEccccC
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---ELQNVEIIVADIST 124 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~ 124 (291)
+...-.+++....-.+.+||++|.| +|..+..+|...|...|...|-+.+.++..++....+ ++.++....-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 4444455555555568899999999 5666677777778889999999999888776654433 22334333333332
Q ss_pred Cc--cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FE--ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~--~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.. .. ..||.|+|...+..-+....+++.+...|+|.|..++..|-
T Consensus 95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc
Confidence 21 11 58999999998755566678899999999999997776653
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=69.68 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHH--Hh--C-C--CCeEEEEccccCCccC--CCc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCR--VL--E-L--QNVEIIVADISTFEME--ASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~--~~--~-~--~~v~~~~~d~~~~~~~--~~~ 131 (291)
+...+||-+|.|.|..++.+. ++| -.+++-||++|+|++.++.+.. +. + . ++++++..|+.++... ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 456799999999999999998 567 4699999999999999985432 21 1 1 5799999999997654 789
Q ss_pred cEEEEcccccccc-----cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMK-----NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|.|+....=..-+ -..++...+++.|+++|.++++.-..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9999864322211 12567888999999999999976543
No 242
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=2e-06 Score=72.57 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC-CCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME-ASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~-~~~D~i~~~~~ 139 (291)
..+..++|+|||.|.... ..|.+.+.|.|++...+..+++ . +. ....+|+...+.. .+||.+++..+
T Consensus 44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~----~---~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR----S---GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc----C---CCceeehhhhhcCCCCCCccccchhhhh
Confidence 348899999999997654 2377899999998886655543 1 33 5778999998877 89999999999
Q ss_pred ccccc---cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 140 FEHMK---NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 140 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+||+. ....+++++.+.|+|||..++......
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 99994 346799999999999999888766553
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.18 E-value=1.1e-06 Score=64.58 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=44.7
Q ss_pred EEEcCCcchHHHHHHHHCCC---CEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc--cC-CCccEEEEcccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSN---CKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE--ME-ASYDRIYSIEMF 140 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~-~~~D~i~~~~~l 140 (291)
||+|+..|..+..+++..+. .+++++|..+. .+...+..++.++ ++++++.++..+.. .. +++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-
Confidence 68999999999888875432 37999999985 2234444444455 47999999987752 22 78999998753
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|..+.....++.+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223455678889999999999998864
No 244
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.17 E-value=1.7e-06 Score=69.41 Aligned_cols=145 Identities=16% Similarity=0.217 Sum_probs=95.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-ccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-EMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~i~~~~~l~ 141 (291)
.+.++||+|+|.|..+..++..+ .+|++.++|..|+...++ .+. || ....++ ..+-++|+|.|.+.+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~y-nV----l~~~ew~~t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNY-NV----LTEIEWLQTDVKLDLILCLNLLD 180 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCC-ce----eeehhhhhcCceeehHHHHHHHH
Confidence 45799999999999999998764 479999999998766543 333 21 111122 1225799999999998
Q ss_pred ccccHHHHHHHHHhcccc-CeeEEEEeeccCCcccccccCCccchhhhhccCCCCCCcHHHHHHhhcCcEEEEeeecCCC
Q 022864 142 HMKNYQNLLKKISKWMKE-DTLLFVHHFCHKTFAYHFEDTNDDDWITKYFFTGGTMPSANLLLYFQDDVSVVDHWLVNGK 220 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
..-++-++++.+..+|+| +|.++++-..+-. + +.+ .-++|.....+. ...+.|.
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrvivaLVLP~~-h--YVE----------~N~~g~~~rPdn------------~Le~~Gr 235 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVALVLPYM-H--YVE----------TNTSGLPLRPDN------------LLENNGR 235 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEEEEeccc-c--eee----------cCCCCCcCCchH------------HHHhcCc
Confidence 888889999999999999 8988776542211 1 100 012221111111 1123456
Q ss_pred cHHHHHHHHHHHHHhcHHhHhhh
Q 022864 221 HYAQTSEEWLKRMDNNLASIKPI 243 (291)
Q Consensus 221 ~y~~tl~~w~~~l~~~~~~~~~~ 243 (291)
.|.....+..+.|...|+.+++.
T Consensus 236 ~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 236 SFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred cHHHHHHHHHHHHHhcCchhhhh
Confidence 67777777788888888877654
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.15 E-value=1.5e-05 Score=69.24 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-- 127 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 127 (291)
.+++++++.+...++..++|.-||.|+.+..+++..+..+|+|+|.++.+++.++++....+ +++.++++++.++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHL 85 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHH
Confidence 46788888888888899999999999999999988766899999999999999998876543 479999999887531
Q ss_pred ---C-CCccEEEEcccc
Q 022864 128 ---E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ---~-~~~D~i~~~~~l 140 (291)
. .++|.|++..-.
T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305)
T ss_pred HhcCCCcccEEEEeccC
Confidence 1 468988886533
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.15 E-value=1.2e-05 Score=69.27 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=48.8
Q ss_pred CCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CC-CCeEEEEcccc----CCc-cC-CCccEE
Q 022864 64 GHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-EL-QNVEIIVADIS----TFE-ME-ASYDRI 134 (291)
Q Consensus 64 ~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~-~~v~~~~~d~~----~~~-~~-~~~D~i 134 (291)
..++||||||... +.+..++.+ +.+++|.|+++..++.|++++..+ ++ ++|.++...-. ... .+ +.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 5689999999764 455555555 899999999999999999999998 77 47888765322 211 11 689999
Q ss_pred EEccccccc
Q 022864 135 YSIEMFEHM 143 (291)
Q Consensus 135 ~~~~~l~~~ 143 (291)
+|+.+|+.-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999999865
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=3.2e-05 Score=62.03 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=82.3
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i 134 (291)
+++.++.+||-+|..+|....+++.-.+...+++|+.|+.........+.+. +|+-.+..|+.....- +..|+|
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEE
Confidence 4678999999999999999999988766678999999999988887777665 3788899998875321 678998
Q ss_pred EEcccccccccHH-HHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+..-+= ++.. -+..++...||+||.+++..-
T Consensus 150 y~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 150 YQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred EEecCC---chHHHHHHHHHHHhcccCCeEEEEEE
Confidence 875221 3333 367778999999998777554
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3e-05 Score=63.95 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=79.7
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC
Q 022864 51 MLELYCERSRL-EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME 128 (291)
Q Consensus 51 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~ 128 (291)
++...++...+ .++..+||+|+.||+++..+.++. ..+|+++|....++.+-.++ . ++ +.+...|+..+.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHH
Confidence 34455555444 478999999999999999999884 56899999999877654432 1 24 44556677765433
Q ss_pred ---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 129 ---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 129 ---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+..|+|+|.-+|. .+..++..+..+++|++-++.
T Consensus 140 ~~~~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE
Confidence 6789999988885 557889999999999998765
No 249
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.08 E-value=5.4e-05 Score=67.21 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEE
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRI 134 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i 134 (291)
+..+++.||||.++-+|+-+.++|..- ....|++.|.+.+-+...+.++...|+.+......|..+++.. .+||.|
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 456799999999999999888887653 2458999999999999999999999998888888898876522 579999
Q ss_pred EEcccccc--c--------------------ccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEH--M--------------------KNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~--~--------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
....+... + .-.+++|....+++++||+|+-++.+..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 97665433 1 1146788899999999999999887653
No 250
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.05 E-value=4.4e-05 Score=61.81 Aligned_cols=110 Identities=16% Similarity=0.201 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~ 126 (291)
..++.+.+.+. .+|.+||++|-|-|.....+.+.- ..+=+.++..|..++.++ ..|. +||....+-+++..
T Consensus 89 piMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~-p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 89 PIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAP-PDEHWIIEAHPDVLKRMR----DWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred HHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcC-CcceEEEecCHHHHHHHH----hcccccccceEEEecchHhhh
Confidence 33444444333 668899999999999988887664 455667899999765554 4444 47888888888754
Q ss_pred cC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 127 ME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 127 ~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.. +.||-|+-..--++.++...+.+.+.++|||+|++-+
T Consensus 163 ~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 32 7799999876657778899999999999999998754
No 251
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.04 E-value=5.5e-05 Score=62.22 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=69.9
Q ss_pred EEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022864 67 VLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~ 144 (291)
|.||||--|.+..+|.+.....+++++|+++..++.|+++....++ +++++..+|-.+.-.+ +..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999986445899999999999999999999998 5799999996654333 44799888765431
Q ss_pred cHHHHHHHHHhccccCeeEEEEee
Q 022864 145 NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
....++++....++....|+++..
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHhhHHHhccCCeEEEeCC
Confidence 235566666666666566666543
No 252
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.03 E-value=0.00024 Score=59.05 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYS 136 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~ 136 (291)
+.-.|++||-+|=.-- .|+.++-..+..+|+.+|+++..++..++.+++.|+ +++.+..|+.+.-++ ++||+++.
T Consensus 41 gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE
T ss_pred CcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEe
Confidence 4446889999995543 344444445578999999999999999999999999 499999999985333 89999999
Q ss_pred cccccccccHHHHHHHHHhccccCe-eEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDT-LLFV 165 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG-~l~~ 165 (291)
..+. .++....++.+....||..| ..++
T Consensus 119 DPPy-T~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPPY-TPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ---S-SHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCCC-CHHHHHHHHHHHHHHhCCCCceEEE
Confidence 8765 45677889999999999766 4444
No 253
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.02 E-value=2e-05 Score=63.14 Aligned_cols=106 Identities=19% Similarity=0.393 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-------CCCeEEEEccccCCccC----CCc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-------LQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~~----~~~ 131 (291)
..-.+.|||||-|++...|+..+|..-+.|.++--..-++.++++...+ ++|+.+...+...+.+. ++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4568999999999999999999999999999999998888888876654 45677777777665432 333
Q ss_pred cEEEEccccccccc--------HHHHHHHHHhccccCeeEEEEee
Q 022864 132 DRIYSIEMFEHMKN--------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 132 D~i~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+-++....-.|+.. ...++.+..=+|++||.++..+-
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 33333333333311 23477788889999999887553
No 254
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=0.00015 Score=62.06 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME 128 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 128 (291)
.+++++++.+...++...+|.--|.|+.+..+.+++|. .+++|+|-++.+++.|++.....+ +++.+++.++.++...
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH
Confidence 46788888899999999999999999999999999864 569999999999999999887755 3889999887765311
Q ss_pred ------CCccEEEE
Q 022864 129 ------ASYDRIYS 136 (291)
Q Consensus 129 ------~~~D~i~~ 136 (291)
.++|-|+.
T Consensus 89 l~~~~i~~vDGiL~ 102 (314)
T COG0275 89 LKELGIGKVDGILL 102 (314)
T ss_pred HHhcCCCceeEEEE
Confidence 46666665
No 255
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.96 E-value=4.8e-05 Score=63.55 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
++..+|+|||||.-.++.......++..++|+|++..+++.........+. +.++...|...-+++...|+.+..=+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 457899999999999998888777788999999999999999998888876 6788888988876668899999987776
Q ss_pred cccc
Q 022864 142 HMKN 145 (291)
Q Consensus 142 ~~~~ 145 (291)
.++.
T Consensus 183 ~le~ 186 (251)
T PF07091_consen 183 CLER 186 (251)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 256
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=4.2e-05 Score=60.98 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=77.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHH------HHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 54 LYCERSRLEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQK------EFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 54 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~------~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+++...+++++.+|+|+=.|.|.+++.++... |...|+++-..+... ......+++....|+..+..+...+.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 45556678999999999999999999998764 445777765443311 11122222233346666666666665
Q ss_pred cCCCccEEEEccccccc-------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 MEASYDRIYSIEMFEHM-------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.++..|+++.....|.+ ....++...+.+.|||||++++.+-
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 55778888875555443 2356789999999999999988653
No 257
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.00021 Score=56.68 Aligned_cols=99 Identities=19% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc-cccCCc---------cCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA-DISTFE---------MEA 129 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-d~~~~~---------~~~ 129 (291)
+.|+.+|||+||.+|.++....++. |...|.|||+-.- ..++.+.++++ |+.+.. +..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3689999999999999999988875 8889999998432 12234566666 776642 226
Q ss_pred CccEEEEccccccc----ccHH-------HHHHHHHhccccCeeEEEEeecc
Q 022864 130 SYDRIYSIEMFEHM----KNYQ-------NLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 130 ~~D~i~~~~~l~~~----~~~~-------~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+.|+|+|...-..- .|.. .++.-....++|+|.++.-.+..
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 89999986532211 2333 34444566788999999877644
No 258
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.00013 Score=66.55 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=97.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEEcCCcchHHHHHHHH----CCCCEEEEEcCCHHHHHHHHHHH
Q 022864 35 CYFSDASKTLEDAEKAMLELYCERSRLED---GHTVLDVGCGWGSLSLYIAQK----YSNCKITGICNSKTQKEFIEEQC 107 (291)
Q Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~vLDiGcG~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~~~ 107 (291)
..|+.+....++.+++.+..+.++..... ...|+-+|+|-|.+.....+. ....++++|+.+|+++-..+. .
T Consensus 336 etFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~ 414 (649)
T KOG0822|consen 336 ETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-R 414 (649)
T ss_pred hhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-h
Confidence 56777777888888999998888864432 457789999999876554432 235789999999998877665 3
Q ss_pred HHhCC-CCeEEEEccccCCccC-CCccEEEEc--ccccccccHHHHHHHHHhccccCeeEEE
Q 022864 108 RVLEL-QNVEIIVADISTFEME-ASYDRIYSI--EMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 108 ~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~--~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
..... ++|+++..|+.++..+ ++.|++|+- ++|..-+-.++.|..+.+.|||+|+.+=
T Consensus 415 n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 415 NFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 22233 4799999999999887 899998873 3444334467899999999999987653
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.75 E-value=0.00025 Score=54.18 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--C-CccEEEEcccccccc-----------cHHHHHHHH
Q 022864 89 KITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--A-SYDRIYSIEMFEHMK-----------NYQNLLKKI 153 (291)
Q Consensus 89 ~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--~-~~D~i~~~~~l~~~~-----------~~~~~l~~~ 153 (291)
+|+|+|+.+++++.++++.++.++ ++++++..+=+.+... . ++|+++.|. .+++ ..-..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999888 4799999877776533 3 799998874 3332 245688899
Q ss_pred HhccccCeeEEEEee
Q 022864 154 SKWMKEDTLLFVHHF 168 (291)
Q Consensus 154 ~~~LkpgG~l~~~~~ 168 (291)
.+.|+|||.+.+...
T Consensus 79 l~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLKPGGIITIVVY 93 (140)
T ss_dssp HHHEEEEEEEEEEE-
T ss_pred HHhhccCCEEEEEEe
Confidence 999999999887654
No 260
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.69 E-value=0.00079 Score=62.91 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=100.4
Q ss_pred hhcCCChHHHHHhhCCC---CCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCC---
Q 022864 13 QHYELPTSFFKLVLGKY---FKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYS--- 86 (291)
Q Consensus 13 ~~yd~~~~~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--- 86 (291)
...|.-.+.|+.++... ..-..|-|-.+ ......+++.+...+..+|+|..||+|++.....+...
T Consensus 141 ~~~d~~G~~yE~ll~~fa~~~~k~~GEfyTP--------~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~ 212 (489)
T COG0286 141 LDRDLFGDAYEYLLRKFAEAEGKEAGEFYTP--------REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ 212 (489)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCCCccCCh--------HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc
Confidence 34567788888877532 11111222212 23344455555556777999999999998877766541
Q ss_pred -CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCcc-----C-CCccEEEEcccccc---cc-----------
Q 022864 87 -NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEM-----E-ASYDRIYSIEMFEH---MK----------- 144 (291)
Q Consensus 87 -~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----~-~~~D~i~~~~~l~~---~~----------- 144 (291)
...++|.|+++.....++-++--+|++ ++....+|...-+. . ..||+|+++.++.. ..
T Consensus 213 ~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~ 292 (489)
T COG0286 213 DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERF 292 (489)
T ss_pred cceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccc
Confidence 267999999999999999998888875 34555565544321 2 67999999998740 00
Q ss_pred -----------cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 145 -----------NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 145 -----------~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
....+++.+...|+|||+..+..+..
T Consensus 293 ~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 293 FFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred cccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 12568999999999999776665544
No 261
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00031 Score=61.05 Aligned_cols=112 Identities=10% Similarity=0.083 Sum_probs=73.6
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----CccCCCccEE
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST----FEMEASYDRI 134 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----~~~~~~~D~i 134 (291)
..-...+|||+|.|.|.-...+-..+|.. .++.++.|+..-+...............+...|+.. ++....|++|
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehh
Confidence 33456789999999999887777777764 678888998876666555544333233333333332 3222556666
Q ss_pred EEcccccccc---cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHMK---NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+...-+-+.. .....++.+...+.|||.+++...+.+
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 6655444442 234478999999999999999887753
No 262
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00077 Score=51.42 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
.+.++.++..+...+..+.+|+|+|.|......++.. -...+|+++++-.+.+++-.+-..|+ ++..|..-|+-+...
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 4455666777777777799999999999988888763 35789999999999999887777777 468888888888665
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
. .|..|+...+=.-+ ..+-.++..-+..|..++..-+
T Consensus 137 ~-dy~~vviFgaes~m---~dLe~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 137 R-DYRNVVIFGAESVM---PDLEDKLRTELPANTRVVACRF 173 (199)
T ss_pred c-ccceEEEeehHHHH---hhhHHHHHhhCcCCCeEEEEec
Confidence 3 33434433322222 3344556666777887766544
No 263
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.59 E-value=0.00075 Score=56.76 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CCeEEEEccccCCccC----CC-c
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL------QNVEIIVADISTFEME----AS-Y 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~----~~-~ 131 (291)
...+||++|+|+|-.+..++... +.+|...|+ +..++..+.+...+.. ..+.+...++...... .. +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45689999999998888777654 889999987 4444444444322221 1455555555543211 44 8
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
|+|++..++..-.....++..+...|..+|.+++...-+.
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999998888888889999999999997777766544
No 264
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.52 E-value=0.00051 Score=57.22 Aligned_cols=89 Identities=22% Similarity=0.389 Sum_probs=54.4
Q ss_pred HHHHHHcCCCCCC--EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---HHHhCC------CCeEEEEcc
Q 022864 53 ELYCERSRLEDGH--TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ---CRVLEL------QNVEIIVAD 121 (291)
Q Consensus 53 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~------~~v~~~~~d 121 (291)
+.+++.++++++. +|||.-+|.|.-+..++.. |++|+++|-||-.....+.- +..... .+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 4566667777664 9999999999999999976 88999999999876555532 222111 378999999
Q ss_pred ccCCcc--CCCccEEEEccccccc
Q 022864 122 ISTFEM--EASYDRIYSIEMFEHM 143 (291)
Q Consensus 122 ~~~~~~--~~~~D~i~~~~~l~~~ 143 (291)
..++.. ..+||+|++..+|.+-
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S----
T ss_pred HHHHHhhcCCCCCEEEECCCCCCc
Confidence 988532 2789999999999764
No 265
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.50 E-value=0.0023 Score=52.10 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHHHHH----cCCCCCCEEEEEcCCcchHHHHHHHHCCC--CEEEEEcCCHHHHHHHHHHHHH-------------
Q 022864 49 KAMLELYCER----SRLEDGHTVLDVGCGWGSLSLYIAQKYSN--CKITGICNSKTQKEFIEEQCRV------------- 109 (291)
Q Consensus 49 ~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~------------- 109 (291)
.+...+++++ +....+.++.|-+||.|.+.-.+.-.++. ..|++.|+++++++.|++|..-
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL 112 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREEL 112 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHH
Confidence 3444444443 34456789999999999988777655433 4899999999999999886511
Q ss_pred ----------------------------h-CCCCeEEEEccccCCc------cCCCccEEEEccccccccc---------
Q 022864 110 ----------------------------L-ELQNVEIIVADISTFE------MEASYDRIYSIEMFEHMKN--------- 145 (291)
Q Consensus 110 ----------------------------~-~~~~v~~~~~d~~~~~------~~~~~D~i~~~~~l~~~~~--------- 145 (291)
. +.......+.|+++.. .....|+|+..-+...+.+
T Consensus 113 ~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p 192 (246)
T PF11599_consen 113 RELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGP 192 (246)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCc
Confidence 0 1224678888888842 2234699999887765522
Q ss_pred HHHHHHHHHhccccCeeEEEEe
Q 022864 146 YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 146 ~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...+++.+..+|.+++++.+++
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEec
Confidence 4679999999996677776643
No 266
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.0011 Score=60.43 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=82.4
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~ 143 (291)
.++|-+|||.-.++..+.+.. ...|+.+|+|+-.++.+...-. ...+-..+...|+..+.++ ++||+|+..+.++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 499999999999988887653 4689999999999888776543 2223588999999998888 999999999988877
Q ss_pred -cc---------HHHHHHHHHhccccCeeEEEEeec
Q 022864 144 -KN---------YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 144 -~~---------~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+ ....+..+.++|+|||+.+..+..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 11 234678899999999998776663
No 267
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.42 E-value=0.00018 Score=62.44 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--- 127 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 127 (291)
++.++++.+...++..++|.--|.|+.+..+.++.|+.+++|+|.++.+++.++++..... +++.++++++.++..
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHH
Confidence 5678888888888999999999999999999999888999999999999888876654332 478888888877531
Q ss_pred ---C-CCccEEEEcc
Q 022864 128 ---E-ASYDRIYSIE 138 (291)
Q Consensus 128 ---~-~~~D~i~~~~ 138 (291)
. .++|.|+...
T Consensus 87 ~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 87 ELNGINKVDGILFDL 101 (310)
T ss_dssp HTTTTS-EEEEEEE-
T ss_pred HccCCCccCEEEEcc
Confidence 1 3677776644
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0002 Score=60.86 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=98.3
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEE
Q 022864 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKIT 91 (291)
Q Consensus 15 yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~ 91 (291)
+|...++.....-+++.|..-+-..+-..+.+..+-...+++..+ .+...++||-||.|-|...+..+++-.-.++.
T Consensus 70 ~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~ 149 (337)
T KOG1562|consen 70 HDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENIL 149 (337)
T ss_pred ccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecccccccee
Confidence 344455555544555555432222222222222222223333222 34567899999999999999988763234789
Q ss_pred EEcCCHHHHHHHHHHHHHh--CC--CCeEEEEccccCCcc---CCCccEEEEcccccccc----cHHHHHHHHHhccccC
Q 022864 92 GICNSKTQKEFIEEQCRVL--EL--QNVEIIVADISTFEM---EASYDRIYSIEMFEHMK----NYQNLLKKISKWMKED 160 (291)
Q Consensus 92 ~vD~s~~~~~~a~~~~~~~--~~--~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~Lkpg 160 (291)
.+|++...++..++..... |. +++....+|-..+.. .++||+|+....=.-.+ -.+.++..+.+.||+|
T Consensus 150 ~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 150 LCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred eehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999998877653 33 479999998877532 27899998743221111 2356888999999999
Q ss_pred eeEEEEe
Q 022864 161 TLLFVHH 167 (291)
Q Consensus 161 G~l~~~~ 167 (291)
|+++.+.
T Consensus 230 gv~~~q~ 236 (337)
T KOG1562|consen 230 GVVCTQG 236 (337)
T ss_pred cEEEEec
Confidence 9998865
No 269
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.38 E-value=0.0033 Score=51.50 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.+.++.||||--+.+..+|.+.++...++++|+++..++.|.+++++.++ ++++...+|-...-.. ..+|+|+..++=
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 45669999999999999999998888999999999999999999999988 6789999988553322 578999887654
Q ss_pred cccccHHHHHHHHHhccccCeeEEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.. -...++++-...|+.--.++++
T Consensus 96 G~--lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 96 GT--LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred HH--HHHHHHHHhhhhhcCcceEEEC
Confidence 32 2355666666666654455554
No 270
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0016 Score=55.89 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhC-----------------------C----
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLE-----------------------L---- 112 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~-----------------------~---- 112 (291)
...+||--|||.|.++..|+.. |..+-|-+.|--|+-...-.. +..+ +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3579999999999999999988 556777788877764433221 1000 0
Q ss_pred ----------CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 113 ----------QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 113 ----------~~v~~~~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+...-.||+.+.-.. +.||+|+.+..+....+.-..++.+..+|||||+.+=..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecc
Confidence 0111223555543222 469999999888777888999999999999999876533
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.31 E-value=0.0014 Score=59.06 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCc--cCCCccEEEEc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFE--MEASYDRIYSI 137 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~--~~~~~D~i~~~ 137 (291)
.+.+|||.=+|+|.=++..+...++ .+|+..|+|++.++.+++|++.++++ ++.+.+.|+..+. ....||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4579999999999999988888433 58999999999999999999999984 4889899998865 34889988654
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
-+..+..+++.+.+.++.||.|.++...
T Consensus 129 ----PfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 ----PFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ----CCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 2345678999999999999999996554
No 272
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.21 E-value=0.0012 Score=53.91 Aligned_cols=112 Identities=11% Similarity=0.117 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCc
Q 022864 52 LELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFE 126 (291)
Q Consensus 52 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 126 (291)
+++++-.+ ++..|+|+|.-.|+.+..+|.. . +..+|+|+|++..... ++..+.... ++|+++++|..+..
T Consensus 24 ~qeli~~~---kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 24 YQELIWEL---KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTH
T ss_pred HHHHHHHh---CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHH
Confidence 34444433 3569999999999988877653 2 5689999999644321 111222222 58999999988753
Q ss_pred cC-------CCcc-EEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 ME-------ASYD-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~-------~~~D-~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.- ...+ ++++..+-|...+.-+.|+.....+++|+++++.+.
T Consensus 99 ~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp HHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11 1123 233334444446677888889999999999998654
No 273
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0049 Score=54.31 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=80.3
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCC----CEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSN----CKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------- 127 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------- 127 (291)
++++|+.+|||+++-+|+-+..+.+..-. ..|++-|.++.-+.......+....+++.+...|+..++.
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence 46789999999999999999888776322 2799999999988887777644433455555555544321
Q ss_pred --C-CCccEEEEcccc------ccccc-----------------HHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 128 --E-ASYDRIYSIEMF------EHMKN-----------------YQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 128 --~-~~~D~i~~~~~l------~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
. ..||-|+|.-+. ....+ ...++.+..++||+||.++-++.+...
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 1 579999884322 11111 245888999999999999998876543
No 274
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.13 E-value=0.18 Score=44.95 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=66.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH--------C--------CCCEEEEEcCCHHHHHHHHHHHHHh-----C
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK--------Y--------SNCKITGICNSKTQKEFIEEQCRVL-----E 111 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~--------~--------~~~~v~~vD~s~~~~~~a~~~~~~~-----~ 111 (291)
..+......+...+|.|+||..|..+..+... + |..+|+.-|+-.+-....-+..... .
T Consensus 6 ~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~ 85 (334)
T PF03492_consen 6 KELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK 85 (334)
T ss_dssp HHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC
Confidence 34443334566789999999999998877542 1 1258888886554333322222111 0
Q ss_pred CCC--eEEEEccccCCccC-CCccEEEEccccccccc---------------------------------------HHHH
Q 022864 112 LQN--VEIIVADISTFEME-ASYDRIYSIEMFEHMKN---------------------------------------YQNL 149 (291)
Q Consensus 112 ~~~--v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~---------------------------------------~~~~ 149 (291)
..+ +.-+.+.+..-.++ ++.|+++|..++||+.. +..+
T Consensus 86 ~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~F 165 (334)
T PF03492_consen 86 FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSF 165 (334)
T ss_dssp TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 112 33445666654444 89999999999988721 1123
Q ss_pred HHHHHhccccCeeEEEEeeccCC
Q 022864 150 LKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 150 l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
|+.=.+-|+|||++++..++.+.
T Consensus 166 L~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 166 LKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHhhheeccCcEEEEEEeeccc
Confidence 33334567899999999998876
No 275
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0037 Score=55.10 Aligned_cols=102 Identities=22% Similarity=0.153 Sum_probs=81.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~ 141 (291)
..+|||.=||+|.=++..+...+..+|+.-|+||+.++.+++|++.+...+...+..|+..+... ..||+|=.. ++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD-PF- 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID-PF- 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC-CC-
Confidence 67999999999999999998875669999999999999999999988444566666888776544 778876443 33
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
..+..+++...+.++.||.|.+.-..
T Consensus 131 --GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 131 --GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred --CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 45667888888889999999885443
No 276
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.08 E-value=0.0022 Score=53.03 Aligned_cols=109 Identities=11% Similarity=0.083 Sum_probs=74.8
Q ss_pred HHcCCCCCCEEEEEcCCcchHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCc
Q 022864 57 ERSRLEDGHTVLDVGCGWGSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASY 131 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~ 131 (291)
+.+.++|+.+||-||+++|......... .|..-|++|+.|...=......+++. +||..+.-|+.....- .-.
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCCCchheeeeeeeE
Confidence 4456789999999999999987777654 36678999999887654444433333 3777777887764211 456
Q ss_pred cEEEEcccccccccHHH-HHHHHHhccccCeeEEEEeecc
Q 022864 132 DRIYSIEMFEHMKNYQN-LLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~-~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
|+|++.-+- ++... +.-+....||+||-++++.-..
T Consensus 228 DvIFaDvaq---pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 228 DVIFADVAQ---PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred EEEeccCCC---chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 777764221 33333 4556788999999998876544
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.07 E-value=0.0062 Score=53.67 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=67.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDR 133 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~ 133 (291)
.+....|+.+|+=+|+| .|..+..+++.. +++|+++|.|++-.+.|++ .|.+ .++...-.+.... +.+|+
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~----lGAd--~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKK----LGAD--HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHH----hCCc--EEEEcCCchhhHHhHhhCcE
Confidence 34567899999999987 557888888765 7999999999997666655 3432 2333221111111 34899
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+..-+ ...+....+.|++||.+++.-.
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 887533 4567778889999999888544
No 278
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.04 E-value=0.016 Score=52.18 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=65.8
Q ss_pred CCEEEEEcCCcchHHHHHHHH---------------CCCCEEEEEcCCHHHHHHHHHHHHH--------------hCCCC
Q 022864 64 GHTVLDVGCGWGSLSLYIAQK---------------YSNCKITGICNSKTQKEFIEEQCRV--------------LELQN 114 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~---------------~~~~~v~~vD~s~~~~~~a~~~~~~--------------~~~~~ 114 (291)
..+|+|+|||+|..+..+... -|..+|..-|+..+-....-+.... .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 669999999999887665331 1346788888654433332222211 01001
Q ss_pred --eEEEEccccCCccC-CCccEEEEccccccccc--------------------------------------HHHHHHHH
Q 022864 115 --VEIIVADISTFEME-ASYDRIYSIEMFEHMKN--------------------------------------YQNLLKKI 153 (291)
Q Consensus 115 --v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~ 153 (291)
+.-+.+.+-.-.++ ++.++++|..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222344333344 88999999999998842 11233333
Q ss_pred HhccccCeeEEEEeeccCC
Q 022864 154 SKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 154 ~~~LkpgG~l~~~~~~~~~ 172 (291)
.+-|.|||.+++...+++.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHhccCcEEEEEEecCCC
Confidence 4568899999999998864
No 279
>PHA01634 hypothetical protein
Probab=97.02 E-value=0.0049 Score=45.88 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC-CCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME-ASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~~D~i~~ 136 (291)
.+.+|+|||.+.|..+++++-+. ...|+++++++...+..+++++...+ ++.. ... +++.. ++||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccccCCCcceEEE
Confidence 47899999999999999999774 56899999999999999888776543 2111 111 23323 67887765
No 280
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.90 E-value=0.0021 Score=55.88 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.8
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHH-------HHHHHHHHhCC-C-CeEEEEccccCCccC-
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKE-------FIEEQCRVLEL-Q-NVEIIVADISTFEME- 128 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~~-~-~v~~~~~d~~~~~~~- 128 (291)
....+|.-|+|---|||++....+.- |+.|.|.|++-.++. ..+.|+++.|. + -+.+..+|....+..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 34679999999999999998888754 899999999998877 34567777775 2 377888898886544
Q ss_pred -CCccEEEEccccc------------------------cccc---------HHHHHHHHHhccccCeeEEEEee
Q 022864 129 -ASYDRIYSIEMFE------------------------HMKN---------YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 -~~~D~i~~~~~l~------------------------~~~~---------~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..||.|+|..+.. |.+. ...++.-..+.|.-||++++-.|
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 6899999987652 1110 23466667788999999888555
No 281
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.00039 Score=53.49 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=40.1
Q ss_pred CccC-CCccEEEEccccccc--ccHHHHHHHHHhccccCeeEEEEeeccCC
Q 022864 125 FEME-ASYDRIYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCHKT 172 (291)
Q Consensus 125 ~~~~-~~~D~i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 172 (291)
..+. .+.|+|.+.++++|+ ..-..+++.+.+.|||||+|-++.|....
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 3344 889999999999999 45567899999999999999998886544
No 282
>PTZ00357 methyltransferase; Provisional
Probab=96.85 E-value=0.011 Score=56.11 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=67.1
Q ss_pred CEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHH-hCC--------CCeEEEEccccCCccC---
Q 022864 65 HTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRV-LEL--------QNVEIIVADISTFEME--- 128 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~--------~~v~~~~~d~~~~~~~--- 128 (291)
..|+-+|+|-|.+.....+. . -..+|++||.++........+... ... .+|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999875554432 1 246899999996654444333211 122 2489999999998532
Q ss_pred ---------CCccEEEE--cccccccccHHHHHHHHHhcccc----Cee
Q 022864 129 ---------ASYDRIYS--IEMFEHMKNYQNLLKKISKWMKE----DTL 162 (291)
Q Consensus 129 ---------~~~D~i~~--~~~l~~~~~~~~~l~~~~~~Lkp----gG~ 162 (291)
+++|+||| .++|..-+-.++.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37999998 55665555567888888888887 776
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.84 E-value=0.013 Score=54.80 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=66.0
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----------Cc--
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----------FE-- 126 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----------~~-- 126 (291)
..++.+|+=+|||. |..+...++.. |++|+++|.+++..+.+++ .|. ++...|..+ ..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA---~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGA---EFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEEeccccccccccchhhhcchh
Confidence 35789999999995 66777777766 7899999999997665554 343 222111111 00
Q ss_pred ---------cC--CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 ---------ME--ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ---------~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.+ ..+|+|+.......-+.+..+.+.+.+.+||||+++....
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 01 3589998875543322333345999999999999776544
No 284
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.83 E-value=0.0018 Score=59.28 Aligned_cols=99 Identities=12% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~ 139 (291)
..-.+|+|...|.|+++..|.+. .+ .....-+..-......+-+.|+ |- +..|+.+ ++ .+..||+|.+..+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~--~V--WVMNVVP~~~~ntL~vIydRGL--IG-~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD--PV--WVMNVVPVSGPNTLPVIYDRGL--IG-VYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred cceeeeeeecccccHHHHHhccC--Cc--eEEEecccCCCCcchhhhhccc--ch-hccchhhccCCCCcchhheehhhh
Confidence 44579999999999999999864 33 2222222111111223334444 22 2234433 33 2389999999998
Q ss_pred ccccc---cHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMK---NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|.... +...++-++-|+|+|+|.++|.+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 87763 46778999999999999999854
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.57 E-value=0.0088 Score=51.85 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=74.6
Q ss_pred HHHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--ccCC---c---
Q 022864 56 CERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--ISTF---E--- 126 (291)
Q Consensus 56 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~---~--- 126 (291)
+++.+.+.+.+||=+|+|+ |..+...++.....+|+.+|+++..++.|++ .|.+.+...... ..++ .
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKA 237 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhh
Confidence 3455778999999999995 6777777777756799999999998888876 344222222111 1111 0
Q ss_pred cC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 127 ME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 127 ~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
.. ..+|+.+...-+ +..++.....+++||.+++...+.+...
T Consensus 238 ~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~~~ 280 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEEIQ 280 (354)
T ss_pred ccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCccc
Confidence 11 458888876444 5567777889999999888887776543
No 286
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0028 Score=53.94 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHc---CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------HHHH--HhCCC-
Q 022864 47 AEKAMLELYCERS---RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIE-------EQCR--VLELQ- 113 (291)
Q Consensus 47 ~~~~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-------~~~~--~~~~~- 113 (291)
.....+..+...+ -...+++|||+|||.|...+....+. .+.+...|.|...++.-. ..+. .....
T Consensus 97 cS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 97 CSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred cHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhccc
Confidence 3344555555442 12468999999999999999888763 378888888887662110 0010 00000
Q ss_pred CeEEEEccccCCcc--CC--CccEEEEcccccccccHHHH-HHHHHhccccCeeEEE
Q 022864 114 NVEIIVADISTFEM--EA--SYDRIYSIEMFEHMKNYQNL-LKKISKWMKEDTLLFV 165 (291)
Q Consensus 114 ~v~~~~~d~~~~~~--~~--~~D~i~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~~ 165 (291)
-......+..+... .+ .||+|.++..+......+.+ .......++++|++++
T Consensus 176 ~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 176 VDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 11222221112221 13 89999999988877766666 5566677888998776
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.006 Score=50.16 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHC----C--CC---EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY----S--NC---KITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------- 126 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~----~--~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------- 126 (291)
-.+++|++...|.++..|.++. + +. .+++||+.+- ..++.|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 4699999999999999998763 1 12 3999998653 24457888899998753
Q ss_pred cC-CCccEEEEccc-----cccccc------HHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 ME-ASYDRIYSIEM-----FEHMKN------YQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~-~~~D~i~~~~~-----l~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+. ++.|+|+|.+. +|.+.. +-..|.-...+|||||.++--.+-.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 23 68999999874 344422 2235555678999999998765543
No 288
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.48 E-value=0.0019 Score=57.61 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCC
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTF 125 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~ 125 (291)
.++|..|.|+.||.|.++..++.+ +++|++.|++++++++.+.+++.+.++ ++..+..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 468899999999999999999988 799999999999999999999877762 478888887664
No 289
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.021 Score=50.37 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcchHHHHHHHH----CC----CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC
Q 022864 53 ELYCERSRLEDGHTVLDVGCGWGSLSLYIAQK----YS----NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST 124 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~----~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 124 (291)
-.+.+.++.+....++|||.|.|.++.-+.+. .| ..++..|++|++..+.-+++.+... .. +......+
T Consensus 67 ~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-~~--~~~~~~~e 143 (370)
T COG1565 67 LQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-DL--IRWVEWVE 143 (370)
T ss_pred HHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-cc--hhHHHHHH
Confidence 34445566667789999999999998877654 23 5799999999997766555554332 11 11222222
Q ss_pred CccCCC-ccEEEEcccccccc
Q 022864 125 FEMEAS-YDRIYSIEMFEHMK 144 (291)
Q Consensus 125 ~~~~~~-~D~i~~~~~l~~~~ 144 (291)
. .++. .-+|++|..+..++
T Consensus 144 ~-~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 144 D-LPKKFPGIVVSNELFDALP 163 (370)
T ss_pred h-ccccCceEEEechhhcccc
Confidence 2 2234 45677888887664
No 290
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.45 E-value=0.0085 Score=53.86 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC--CCccEEEE
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME--ASYDRIYS 136 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~--~~~D~i~~ 136 (291)
...|||||.|||.++...+... +-.|++++.-.-|.+.|++...++|. ++|.++.---.++... ...|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3578999999999999888774 55799999999999999999999998 5788876555544322 33566554
No 291
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.37 E-value=0.027 Score=46.54 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCcchHHHHH---HHHCCCCEEEEEcCCHHHHHHHHHHHHHh-CCC-CeEEEEccccC-C----cc-CCCc
Q 022864 63 DGHTVLDVGCGWGSLSLYI---AQKYSNCKITGICNSKTQKEFIEEQCRVL-ELQ-NVEIIVADIST-F----EM-EASY 131 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~l---a~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~-~v~~~~~d~~~-~----~~-~~~~ 131 (291)
++.++||||.|.- .++= ...+ +.+.+|.|+++..++.|+..+..+ ++. .++.....=.+ + .. .+.|
T Consensus 78 ~~i~~LDIGvGAn--CIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGAN--CIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcc--cccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccccccee
Confidence 5678999987743 2221 1123 678999999999999999988776 443 35554432222 1 11 1789
Q ss_pred cEEEEccccccc
Q 022864 132 DRIYSIEMFEHM 143 (291)
Q Consensus 132 D~i~~~~~l~~~ 143 (291)
|++.|+.+||.-
T Consensus 155 d~tlCNPPFh~s 166 (292)
T COG3129 155 DATLCNPPFHDS 166 (292)
T ss_pred eeEecCCCcchh
Confidence 999999999754
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.32 E-value=0.027 Score=51.13 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-cc----CCccCC
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~----~~~~~~ 129 (291)
......++.+||.+|||. |..+..+++.. +. +++++|.+++..+.+++.. +...+.....+ +. +.....
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCC
Confidence 344567889999999987 88888898886 55 6999999999877766531 22111111111 11 111113
Q ss_pred CccEEEEcccc---------------cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMF---------------EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+-.-.- ....+....+..+.++|+|+|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 68988774211 111334567888999999999987753
No 293
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.24 E-value=0.074 Score=45.56 Aligned_cols=121 Identities=9% Similarity=0.080 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccC
Q 022864 48 EKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADIST 124 (291)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~ 124 (291)
..+.++..+..........|+.||||--.-...+... ++.+++=+|. |+.++.-++.+.+.+. .+..++.+|+.+
T Consensus 66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 3445566655432233457999999987776665422 2567777887 5666666666665432 468888889862
Q ss_pred -Cc-------cC-CCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeecc
Q 022864 125 -FE-------ME-ASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 125 -~~-------~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+. +. ...-++++-+++.+++ ...++++.+.+...||+.+++.....
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 11 11 2345788888888884 56789999998888999998876543
No 294
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.22 E-value=0.0031 Score=45.86 Aligned_cols=38 Identities=13% Similarity=0.416 Sum_probs=30.6
Q ss_pred CccEEEEccccccc------ccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHM------KNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~------~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+||+|+|..+.-++ ..+..+++++.+.|+|||.+++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999999887766 346789999999999999999853
No 295
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.16 E-value=0.024 Score=48.38 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=55.0
Q ss_pred HHHHHcCCCC-CCEEEEEcCCcchHHHHHHHHC--------CCCEEEEEcCCHHHHHHHHHHHHHhC-----C-CCeEEE
Q 022864 54 LYCERSRLED-GHTVLDVGCGWGSLSLYIAQKY--------SNCKITGICNSKTQKEFIEEQCRVLE-----L-QNVEII 118 (291)
Q Consensus 54 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~la~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~~v~~~ 118 (291)
...+.++.+. ..+|+|+|+|.|.++..+.... ...+++.||+|+.+.+.-+++..... . .++.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 3344444333 4799999999999998887653 23589999999998877776654421 1 24666
Q ss_pred EccccCCccCCCccEEEEcccccccc
Q 022864 119 VADISTFEMEASYDRIYSIEMFEHMK 144 (291)
Q Consensus 119 ~~d~~~~~~~~~~D~i~~~~~l~~~~ 144 (291)
..++.+.+ ..-+|+++.++..++
T Consensus 87 ~~~l~~~p---~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 87 LDDLEEVP---FPGFIIANELFDALP 109 (252)
T ss_dssp ESSGGCS----CCEEEEEESSGGGS-
T ss_pred hhhhhccc---CCEEEEEeeehhcCc
Confidence 34444443 457788888887775
No 296
>PRK11524 putative methyltransferase; Provisional
Probab=96.14 E-value=0.024 Score=49.25 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
..++..++... ..+|..|||.-||+|..+....+. +-+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 44556666544 367899999999999999887766 78999999999999999998753
No 297
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.00 E-value=0.022 Score=47.25 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 105 (291)
..++..++... ..++..|||.-||+|+.+....+. +-+.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 44556666554 467889999999999999888776 7799999999999888764
No 298
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.97 E-value=0.12 Score=46.33 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-ccC--CccC--CCccEE
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-IST--FEME--ASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~~--~~~~--~~~D~i 134 (291)
..++.+|+=+|||+ |.++..+++.....+|+++|.+++-++.|++.. +.+.+.....+ ... .... ..+|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 34455999999995 777788888776679999999999888887633 11111111111 100 0111 368998
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+=..- ....+..+.+.++|||.+.+....
T Consensus 243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 243 IEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 85433 345788899999999998876554
No 299
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.96 E-value=0.017 Score=49.99 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=52.9
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---CCCccEEEEccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---EASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~ 141 (291)
.+|+|+.||.|.++..+.+.. ...+.++|+++..++..+.+... ..+.+|+.++.. ...+|+++...+..
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred CcEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 379999999999998887652 33578899999988777766521 156677777643 25799999987665
Q ss_pred cc
Q 022864 142 HM 143 (291)
Q Consensus 142 ~~ 143 (291)
.+
T Consensus 74 ~f 75 (275)
T cd00315 74 PF 75 (275)
T ss_pred hh
Confidence 43
No 300
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.33 Score=40.77 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC----CCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCc--c-CCCccE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS----NCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFE--M-EASYDR 133 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-~~~~D~ 133 (291)
..+..++|+|+|+..-++.|...+. ..+++.+|+|...+....+.....-.. .+.-+++|.+... + ...--+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 4478999999999988877765542 268999999999887665544332221 3556677766521 1 222222
Q ss_pred -EEEccccccc--ccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 134 -IYSIEMFEHM--KNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 134 -i~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
++...++..+ .+...++..+...|+||-.+++.+-..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 3334455555 345679999999999999999865443
No 301
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.94 E-value=0.0035 Score=53.56 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCcchHHH-HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccCCCccEEEEcccc
Q 022864 63 DGHTVLDVGCGWGSLSL-YIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~-~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
.+..|+|+-+|.|.++. .+... ....|+++|.+|..++..++++..++. +++..+.+|-....+....|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec---
Confidence 45799999999999998 55544 256899999999999999999988876 4667777887776555777877653
Q ss_pred cccccHHHHHHHHHhccccCee
Q 022864 141 EHMKNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~ 162 (291)
-++..++-...+.++|||.|-
T Consensus 270 -LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred -cccccccchHHHHHHhhhcCC
Confidence 224445555566777887443
No 302
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.90 E-value=0.073 Score=47.40 Aligned_cols=100 Identities=13% Similarity=0.173 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCccC-CCcc
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEME-ASYD 132 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~D 132 (291)
......++.+||=.||| .|..+..+++.. ++ +|+++|.+++.++.+++ .|.+. +.....++.+.... +.+|
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCC
Confidence 33445578899999986 456667777665 66 79999999987766553 34321 11111122221111 3588
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+-..- ....++...+.|++||++++..
T Consensus 238 ~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 238 VSFEVSG------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 8875422 1345677888999999987754
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.90 E-value=0.049 Score=50.97 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC----------------
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST---------------- 124 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---------------- 124 (291)
.++.+|+=+|||. |..+..+++.. ++.|+++|.+++..+.+++ .|. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa---~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGA---EFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCC---eEEeccccccccccccceeecCHHH
Confidence 4678999999995 56666666665 7899999999996555443 333 232222211
Q ss_pred -------CccC-CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 -------FEME-ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 -------~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
+... ..+|+|+..-.+..-+.+.-+.+++.+.+|||++++-
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 1111 5699998876554444444577888999999998653
No 304
>PRK13699 putative methylase; Provisional
Probab=95.87 E-value=0.044 Score=45.95 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
.++..++... ..++..|||.-||+|+.+....+. +-+.+|+|++++..+.+.+++...
T Consensus 151 ~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3445555443 357889999999999999887765 789999999999999998887654
No 305
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.007 Score=55.20 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccccCCccC-----CCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEME-----ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-----~~~D~i 134 (291)
.++.+|||.=|++|.-++..+...|++ +|++.|.+++.++..+++++.++.+ .+.....|+..+... ..||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 456799999999999999999887765 7999999999999999999888773 467777787664321 679988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
=... ......+|+.+.+.++.||.|++....
T Consensus 188 DLDP----yGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 188 DLDP----YGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ecCC----CCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 6542 234567888889999999999986543
No 306
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.82 E-value=0.049 Score=48.50 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH-------HHHhCC--
Q 022864 42 KTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ-------CRVLEL-- 112 (291)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~-- 112 (291)
..+.+.+...+..+++.+.+.++....|+|+|.|.+...++....-..-.|+++....-+.+..+ .+..|-
T Consensus 171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666667777888888999999999999999999988887654334566777555443333322 222232
Q ss_pred CCeEEEEccccCCccC----CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 113 QNVEIIVADISTFEME----ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 113 ~~v~~~~~d~~~~~~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..+..+++++.+.... ...++|+++++...- ++..-+.++..-+++|-+++-..+
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEecccc
Confidence 2477888887764321 568999998776433 334445578888899998766444
No 307
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.76 E-value=0.027 Score=43.14 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+|+..++..++.....+| -|||+|=|.|..=..|.+.+|+.+|+++|-.-..- ...-.+.-.++.+|+.+..
T Consensus 13 aQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~~P~~~~~ilGdi~~tl 84 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSSTPPEEDLILGDIRETL 84 (160)
T ss_dssp HHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---GGGEEES-HHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCCCCchHheeeccHHHHh
Confidence 566677777777766654 89999999999999999999999999999532211 1111112357788887742
Q ss_pred cC-----CCccEEEEcccccccc-c---HHHHHHHHHhccccCeeEEEEee
Q 022864 127 ME-----ASYDRIYSIEMFEHMK-N---YQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~-----~~~D~i~~~~~l~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. .+.-++.+..-.+.-. | ...+-.-+..+|.|||+++-..+
T Consensus 85 ~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 85 PALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred HHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 21 2333333332222111 1 12233446788999999876443
No 308
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.70 E-value=0.064 Score=45.40 Aligned_cols=126 Identities=11% Similarity=0.090 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHH---C--CCCEEEEEcCCH-------------------
Q 022864 43 TLEDAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQK---Y--SNCKITGICNSK------------------- 97 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~---~--~~~~v~~vD~s~------------------- 97 (291)
.+.......+..+++.+. ..-+..|+|+||-.|..+..++.. + ++-++++.|.-.
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh
Confidence 334444445556665543 122349999999999877665432 2 345788887211
Q ss_pred -------HHHHHHHHHHHHhCC--CCeEEEEccccCCccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 98 -------TQKEFIEEQCRVLEL--QNVEIIVADISTFEME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 98 -------~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
...+..++++...|+ +++.++.+.+.+..+. .++-++.... .........|+.+...|.|||++++
T Consensus 133 ~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 133 EYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp GCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEE
Confidence 123333444444454 5799999999774333 3332222221 1124457789999999999999999
Q ss_pred Eeecc
Q 022864 166 HHFCH 170 (291)
Q Consensus 166 ~~~~~ 170 (291)
.+.+.
T Consensus 211 DDY~~ 215 (248)
T PF05711_consen 211 DDYGH 215 (248)
T ss_dssp SSTTT
T ss_pred eCCCC
Confidence 76654
No 309
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.64 E-value=0.21 Score=44.01 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=62.8
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-------CccCCCc
Q 022864 60 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-------FEMEASY 131 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-------~~~~~~~ 131 (291)
...++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++ .+.+. +..+-.. ......+
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcCCCc
Confidence 45678899999887 478888888776 7899999999987666533 34321 1111111 1112568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+..... ...++.+.+.|+++|.++...
T Consensus 234 D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 988754211 346778889999999988754
No 310
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.50 E-value=0.078 Score=42.60 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHH---C-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-------C-CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQK---Y-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-------E-AS 130 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~---~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------~-~~ 130 (291)
.+..|+++|.-.|+.++..|.. . ...+|.++|++-...+-+... .++|.|+.++-.+... . +.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 3569999999999988877753 2 237999999887654332211 3589999999887531 1 23
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccCCcc
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHKTFA 174 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 174 (291)
--+.+|..+-|+....-+.++.+.++|..|-++++.+......|
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 35556777777777777888888999999999999887766654
No 311
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.49 E-value=0.011 Score=42.76 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCC
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNS 96 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s 96 (291)
.+....+|||||.|.+...|.+. |..-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 35668999999999999988877 8888999963
No 312
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.45 E-value=0.15 Score=45.64 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcC---CHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICN---SKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~---s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
..++.+||=+|+| .|.++..+++.. +++|++++. ++...+.+ ++.|.+.+.....+..+......+|+|+-
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~----~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIV----EELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHH----HHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 4578899999987 366777777765 779999986 56654443 33444211111111111011146888876
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
... ....+....+.|++||.+++..
T Consensus 245 ~~g------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 245 ATG------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CcC------CHHHHHHHHHHccCCcEEEEEe
Confidence 432 1236778889999999987644
No 313
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.42 E-value=0.014 Score=45.40 Aligned_cols=100 Identities=23% Similarity=0.272 Sum_probs=62.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-C-ccCCCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F-EMEASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~-~~~~~~D~i~~~~~l 140 (291)
+++++-+|+..-..-....+. ..++|..||.++--++ +.++ +++ .+...|+.. + ...++||.+.|..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~---~~~~----dr~ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ---EEFR----DRLSSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC---cccc----cccccccHHHHHHHHHHhhccchhhheechh
Confidence 578888888865554444444 2567888886542111 1110 111 122222222 1 112789999999999
Q ss_pred cccc-----c------HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMK-----N------YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~-----~------~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+|+. | -.+.+.++.++|||||.|++..|.-+
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8871 1 24678889999999999999888654
No 314
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.29 E-value=0.092 Score=47.42 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=54.4
Q ss_pred cCCChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEc
Q 022864 15 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGIC 94 (291)
Q Consensus 15 yd~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD 94 (291)
||+-...|..+++ ...|+ ..|+++ +.-.+.+.+.++.+||-|.+|......++.+. ..+|++||
T Consensus 1 ~~~~~~~~~~~f~-~lvY~-~~WEDp------------~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~--P~~I~aVD 64 (380)
T PF11899_consen 1 YGLLERLFTQFFR-GLVYA-QCWEDP------------RVDMEALNIGPDDRVLTITSAGCNALDYLLAG--PKRIHAVD 64 (380)
T ss_pred CchHHHHHHHhcc-ceeec-cccCCc------------HHHHHHhCCCCCCeEEEEccCCchHHHHHhcC--CceEEEEe
Confidence 5666667777766 36674 467644 12234467889999999988877777776643 68999999
Q ss_pred CCHHHHHHHHHH
Q 022864 95 NSKTQKEFIEEQ 106 (291)
Q Consensus 95 ~s~~~~~~a~~~ 106 (291)
+||.+....+=+
T Consensus 65 lNp~Q~aLleLK 76 (380)
T PF11899_consen 65 LNPAQNALLELK 76 (380)
T ss_pred CCHHHHHHHHHH
Confidence 999998776543
No 315
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.17 E-value=0.16 Score=43.22 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEccc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEM 139 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~~~~ 139 (291)
.|..|+-+| -.-..++.++-..-..+|..||++...++...+-+.+.|++++..+.-|+...-+. .+||+++...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDP- 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDP- 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCc-
Confidence 466788888 33344444443332569999999999999999999999998899999999885433 8999877654
Q ss_pred ccccccHHHHHHHHHhccccC---eeEEEE
Q 022864 140 FEHMKNYQNLLKKISKWMKED---TLLFVH 166 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~Lkpg---G~l~~~ 166 (291)
-+.++....++.+=...||.- |++.++
T Consensus 230 peTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 230 PETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred hhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 345666777887777778765 555553
No 316
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.07 E-value=0.42 Score=42.34 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=61.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
.....+++.+||=.|+| .|..+..+++.. +++|++++.+++..+.++ +.|.+.+ + |..+. ..+.+|+++
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~----~~Ga~~v--i--~~~~~-~~~~~d~~i 228 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLAL----ALGAASA--G--GAYDT-PPEPLDAAI 228 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HhCCcee--c--ccccc-CcccceEEE
Confidence 34566789999999976 455666677665 789999999988655544 4454221 1 11111 124578765
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..... ...+....+.|++||++++.-
T Consensus 229 ~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 229 LFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 43221 246788889999999987754
No 317
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.91 E-value=0.61 Score=38.33 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCcc----hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-CeEEEEccc-cCCccC-CCccEEE
Q 022864 63 DGHTVLDVGCGWG----SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADI-STFEME-ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G----~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~~~~~-~~~D~i~ 135 (291)
....+++..|+.| .++...|.+..+.++++|-+++..+...++.+...++. .++|+.++. ++.... ...|+++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 4568888876644 23444444555889999999988887788888777773 468988884 344333 7789888
Q ss_pred EcccccccccHH-HHHHHHHhccccCeeEEEEee
Q 022864 136 SIEMFEHMKNYQ-NLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..--. .+.. ++|+.+. +.|.|.+++..-
T Consensus 121 VDc~~---~d~~~~vl~~~~--~~~~GaVVV~~N 149 (218)
T PF07279_consen 121 VDCKR---EDFAARVLRAAK--LSPRGAVVVCYN 149 (218)
T ss_pred EeCCc---hhHHHHHHHHhc--cCCCceEEEEec
Confidence 76443 4444 5555433 556677666443
No 318
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.71 E-value=0.16 Score=44.66 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=51.5
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--C-CccEEEEcccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--A-SYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~-~~D~i~~~~~l~~ 142 (291)
+++|+-||.|+++.-+.+.. ...+.++|+++...+..+.|.. ....+|+.++... . .+|+++...+...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence 79999999999999988762 2467899999998887777663 6788999987643 3 5999999776544
Q ss_pred c
Q 022864 143 M 143 (291)
Q Consensus 143 ~ 143 (291)
+
T Consensus 74 f 74 (335)
T PF00145_consen 74 F 74 (335)
T ss_dssp T
T ss_pred E
Confidence 4
No 319
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.59 E-value=0.12 Score=44.78 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=71.0
Q ss_pred CCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccc
Q 022864 64 GHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~ 141 (291)
+.+|.=||.| .|..+..++.-. ++.|+.+|+|..-+......+ + .++.........+... .+.|+++..-.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f---~-~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF---G-GRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh---C-ceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4577888888 467777776554 899999999988766655443 2 2566766666555444 6789999876555
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
--+.+.-+.+++.+.||||++++=
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEE
Confidence 556777889999999999998764
No 320
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.34 E-value=0.19 Score=44.63 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcC-CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Q 022864 46 DAEKAMLELYCERSR-LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEE 105 (291)
Q Consensus 46 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~ 105 (291)
+-+.+.+.+++..+. ..+-..|+|+|.|.|.++..++-.+ +..|.+||-|....+.|++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 334445555555443 3466799999999999999999877 8999999999777666654
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.33 E-value=0.45 Score=42.33 Aligned_cols=95 Identities=9% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCCCCEEEEEcCCc-chHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEc
Q 022864 60 RLEDGHTVLDVGCGW-GSLSLYIAQK-YSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~-G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
...++.+||=+|||. |.++..++++ ..+.+|+++|.+++.++.+++ .+. . .... ++.....+|+|+-.
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~-~~~~---~~~~~~g~d~viD~ 229 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T-YLID---DIPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e-eehh---hhhhccCCcEEEEC
Confidence 456789999999873 4455566654 435689999999887766653 221 1 1111 11111247888743
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
--- ......+....+.|++||++++..
T Consensus 230 ~G~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 230 VGG---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCC---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 210 113457888889999999987754
No 322
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.10 E-value=0.31 Score=41.21 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
.+.+++..+|+|.-.|+.+-.|.++ +..|++||..+- + +..-..| .|+....|-..+.+. .+.|-.+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m----a-~sL~dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM----A-QSLMDTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchh----h-hhhhccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 4568999999999999999999988 889999997553 2 2222233 688888998888764 7899888864
Q ss_pred cccccccHHHHHHHHHhcc
Q 022864 139 MFEHMKNYQNLLKKISKWM 157 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~L 157 (291)
+ +.+.++-..+..+|
T Consensus 279 V----EkP~rv~~li~~Wl 293 (358)
T COG2933 279 V----EKPARVAALIAKWL 293 (358)
T ss_pred h----cCcHHHHHHHHHHH
Confidence 3 34555555555544
No 323
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.09 E-value=0.23 Score=42.81 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=59.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc----cCCccCCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADI----STFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~----~~~~~~~~ 130 (291)
......++.+||=+|+| .|..+..+++.. +++ |+++|.+++..+.+++ .|.+.+ +...+. ........
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEe-cCchhhHHHHHHHhCCCC
Confidence 34455688899999886 455666677665 665 9999998886655543 343211 100111 01111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-... ....++.+.+.|+|+|++++..
T Consensus 188 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSG------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCC------ChHHHHHHHHHhcCCCEEEEec
Confidence 888875321 1346777888999999987654
No 324
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.96 E-value=0.91 Score=42.83 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC----CCCEEEEEcCCHHHHHHHHHHHHHhCC--CCeEEEEccccCC-cc--CCCccE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY----SNCKITGICNSKTQKEFIEEQCRVLEL--QNVEIIVADISTF-EM--EASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~-~~--~~~~D~ 133 (291)
++..|.|..||+|.+.....+.. ....++|.+..+.+...++.++...+. +......+|-... .. ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 66899999999999887654332 124689999999999998888665554 1233333443321 11 156899
Q ss_pred EEEccccccc-------------------------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEMFEHM-------------------------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+++.++... ..-..++..+...|++||...+..+
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 9988754321 0112467778889999998666544
No 325
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.95 E-value=0.1 Score=45.33 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--------------------CCCEEEEEcCCHHH--HHHHHHHHHHh-----------
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--------------------SNCKITGICNSKTQ--KEFIEEQCRVL----------- 110 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--------------------~~~~v~~vD~s~~~--~~~a~~~~~~~----------- 110 (291)
..+||.||.|-|.=...++..+ +...++.||+.+-. ++.....+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999987555554433 11489999987653 22222222222
Q ss_pred -CC---C--CeEEEEccccCCccC--------CCccEEEEccccccc-----ccHHHHHHHHHhccccCeeEEEEee
Q 022864 111 -EL---Q--NVEIIVADISTFEME--------ASYDRIYSIEMFEHM-----KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 111 -~~---~--~v~~~~~d~~~~~~~--------~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.. + ++.|.+.|+.....+ ...|+|...+.++.+ ....++|.++-..++||..|+|.+.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 01 1 478999999886542 135777666655433 5567899999999999999888653
No 326
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.92 E-value=0.5 Score=43.25 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=61.2
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
++.+++..+. .++.+|+=+|||. |.....+++.. |++|+++|.++...+.|+. .|. ... +..+. -.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~---~~~--~~~e~--v~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGY---EVM--TMEEA--VK 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCC---EEc--cHHHH--Hc
Confidence 3455554443 4789999999996 54455455544 7899999999886554432 343 221 12221 14
Q ss_pred CccEEEEcccccccccHHHHHHH-HHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKK-ISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~~~~ 167 (291)
.+|+|+... .....+.. ..+.+|+||+++...
T Consensus 257 ~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 257 EGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 579998642 12344554 488999999987654
No 327
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.87 E-value=0.26 Score=42.14 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=44.8
Q ss_pred CCCCCEEEEEcCCcchHHHHHHHHC-----CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCcc
Q 022864 61 LEDGHTVLDVGCGWGSLSLYIAQKY-----SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEM 127 (291)
Q Consensus 61 ~~~~~~vLDiGcG~G~~~~~la~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 127 (291)
+.+...++|+|||.|.++.++++.. +...++.||-...-. .+-...+.... ..+.-+..|+.++..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccch
Confidence 4677899999999999999999876 456899999755322 22223333221 246666777777653
No 328
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.63 E-value=0.37 Score=40.65 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC---CccCCCccEEEE
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST---FEMEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~---~~~~~~~D~i~~ 136 (291)
.++.+||-.|+|. |..+..+++.. +.+|++++.++...+.+++ .+... +.....+... ......+|+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEEE
Confidence 6789999999985 66777777665 7899999999876655533 23211 1111111100 011256899886
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...- ...+..+.+.|+++|.++...
T Consensus 208 ~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 208 AVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 4321 145677788899999987644
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.55 E-value=0.4 Score=43.19 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=61.0
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC-Cc--cCCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST-FE--MEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~-~~--~~~~ 130 (291)
+.....++.+||=.|+| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. +.....|..+ +. ..+.
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCC
Confidence 44566788899999986 356667777665 66 69999999987666543 34321 1111111111 00 1135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 260 ~d~vid~~G------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 260 VDYAFEMAG------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCEEEECCC------ChHHHHHHHHHHhcCCEEEEEc
Confidence 888875321 1345677778899999987643
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.48 E-value=0.81 Score=40.48 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcccc---CCccCCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS---TFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~---~~~~~~~ 130 (291)
..+...++.+||=+|+| .|..+..+++.. +++ |++++.+++..+.+++ .|.+. +.....+.. +......
T Consensus 157 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 157 RRVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCC
Confidence 44566789999999876 355666667665 677 9999999887665543 34321 111111111 1111136
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-... ....+....+.|+++|.+++..
T Consensus 232 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSG------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 898875421 1334566778899999987643
No 331
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=93.46 E-value=0.51 Score=40.60 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=51.8
Q ss_pred ChHHHHHhhCCCCCccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCH
Q 022864 18 PTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSK 97 (291)
Q Consensus 18 ~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~ 97 (291)
+..+|..+++. ..|+ ..|+++...++.. ....+.+|.-||+|......+++.. .++|.+||+++
T Consensus 32 serlf~vlFsg-LvYp-qiwEDp~Vdmeam------------~~g~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ 95 (414)
T COG5379 32 SERLFGVLFSG-LVYP-QIWEDPSVDMEAM------------QLGIGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNP 95 (414)
T ss_pred hHHHHHHHhcc-cccc-cccCCccccHHHH------------hcCCCcEEEEecCCcchHHHHhhcC--CceeEEEeCCH
Confidence 35566655554 5664 5676554433321 2456889999999988888888765 78999999999
Q ss_pred HHHHHHHHHH
Q 022864 98 TQKEFIEEQC 107 (291)
Q Consensus 98 ~~~~~a~~~~ 107 (291)
.++...+-+.
T Consensus 96 ahiAln~lkl 105 (414)
T COG5379 96 AHIALNRLKL 105 (414)
T ss_pred HHHHHHHHHH
Confidence 9987765443
No 332
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.44 E-value=0.82 Score=40.92 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEAS 130 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~~ 130 (291)
.....++.+||=.||| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+. +.....+..+ ......
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCC
Confidence 3456789999999986 366677777765 66 59999999987666643 34321 1111111111 111135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+-.-. . ...++...+.+++||++++..
T Consensus 246 ~d~vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDAVG-----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEC
Confidence 888875321 1 245666778999999987643
No 333
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.2 Score=45.81 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHHHHH-hCCCCeEEEEccccC--CccC--CCccEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYS--NCKITGICNSKTQKEFIEEQCRV-LELQNVEIIVADIST--FEME--ASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~v~~~~~d~~~--~~~~--~~~D~i 134 (291)
.....++|+|.|.|.-.-.+....+ .-.++.||.|..|......+.+. .....+.....-+.. ++.+ ..||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 3456889999997765544444433 34789999999999888777655 111111111101111 1222 569999
Q ss_pred EEcccccccccH----HHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIEMFEHMKNY----QNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
++.+.++++... ...-...++..++|+.+++...+.+
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999888432 2234446677889999888776543
No 334
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.39 E-value=0.21 Score=41.11 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
+..+.++.+.+.-.+.-|.+||.|.|+.++.+.+.. ..+...|+.++..+.-.+-..+... .+...+.+|+..+.
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence 445666666676778899999999999999998763 4588899999988887765555333 36778888876653
No 335
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.25 E-value=0.94 Score=40.00 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=60.3
Q ss_pred cCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccCCccC-CCcc
Q 022864 59 SRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DISTFEME-ASYD 132 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~-~~~D 132 (291)
+...++.+||-.|||. |..+..+++.. +. .+++++.++...+.+++ .+.+. ++.. +....... ..+|
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~~--vi~~~~~~~~~~~~~~~~vd 233 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARA----MGADE--TVNLARDPLAAYAADKGDFD 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCCE--EEcCCchhhhhhhccCCCcc
Confidence 3434788999999875 66777777765 66 79999998887664433 33321 1111 11122112 4589
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+..... ...++.+.+.|+++|+++...
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 98865321 235677889999999987643
No 336
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.13 E-value=0.5 Score=35.35 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=56.7
Q ss_pred CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------cC-CCccEEEEccccccccc
Q 022864 73 GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------ME-ASYDRIYSIEMFEHMKN 145 (291)
Q Consensus 73 G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------~~-~~~D~i~~~~~l~~~~~ 145 (291)
|.|..+..+++.. +++|+++|.++...+.+++ .|.+ .++..+-.++. .+ ..+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEEEEecC------
Confidence 4688899999887 6999999999997666554 4432 12222211111 11 46898886533
Q ss_pred HHHHHHHHHhccccCeeEEEEeec
Q 022864 146 YQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 146 ~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
....++...++|+|+|.+++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESST
T ss_pred cHHHHHHHHHHhccCCEEEEEEcc
Confidence 256888899999999999886543
No 337
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.11 E-value=1.2 Score=35.42 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=59.9
Q ss_pred EcCCcchHHHHHHHHCC-CCEEEEEcCCHH--HHHHHH---HHHHHhCCCCe-EEEEccccCCcc----C-CCccEEEEc
Q 022864 70 VGCGWGSLSLYIAQKYS-NCKITGICNSKT--QKEFIE---EQCRVLELQNV-EIIVADISTFEM----E-ASYDRIYSI 137 (291)
Q Consensus 70 iGcG~G~~~~~la~~~~-~~~v~~vD~s~~--~~~~a~---~~~~~~~~~~v-~~~~~d~~~~~~----~-~~~D~i~~~ 137 (291)
+|=|.-.++..|++.+. +..+++...+.+ ..+... +++....-.++ .....|+.++.. . ..||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56666678888888865 556655544333 222221 22222211122 234567766532 2 789999998
Q ss_pred ccccc-----c--------ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEH-----M--------KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~-----~--------~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+... - .-+..++..+.++|+++|.+.|....
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 76544 1 11356889999999999999886553
No 338
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.07 E-value=0.17 Score=46.47 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------cCCCccEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--------MEASYDRI 134 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~D~i 134 (291)
.+..+|-+|-|.|.+...+....|..++++|+++|.+++.+.+++....-.+..++..|-.+.. ....||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 4568888999999999998888888999999999999999998764322112333333333221 11578988
Q ss_pred EEcc---cccccc----c--HHHHHHHHHhccccCeeEEEEeeccC
Q 022864 135 YSIE---MFEHMK----N--YQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 135 ~~~~---~l~~~~----~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
+..- -.+.+. . -..++..++..|.|.|.+++...++.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 7632 122221 1 24588889999999999988766553
No 339
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.95 E-value=0.71 Score=40.95 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCc----c
Q 022864 55 YCERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFE----M 127 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~----~ 127 (291)
+.+....+++.+||=.|+ |.|.++..|++.. ++.++++-.+++..+ .+++.|.+. +.+...|+.+.. .
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 334456778999999984 5778999999887 657777777776443 334455432 334444443321 1
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
...+|+|+..- -...+.+..+.|+++|.++....
T Consensus 209 g~gvDvv~D~v-------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTV-------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECC-------CHHHHHHHHHHhccCCEEEEEec
Confidence 14699998742 24566778889999999877543
No 340
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.72 E-value=0.81 Score=40.01 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEcccc
Q 022864 47 AEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADIS 123 (291)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~ 123 (291)
+..+.++..+...-...-..|+-||||--.-+-.+-.. ++.+|+-+|. |+.++.-++..++.+. ...+++..|+.
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEecccc
Confidence 34445666555433333679999999965544443321 2578899998 7777777777777664 25889999998
Q ss_pred CCcc----------CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEee
Q 022864 124 TFEM----------EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 124 ~~~~----------~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+... ...--++++-+++.+++ ...+++..+.....||..+++...
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 4321 13345788888998883 467899999999999998887654
No 341
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=92.66 E-value=0.64 Score=33.43 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~ 144 (291)
+|| +-||.|..+..++++ .++.+++.|+ .+++......+.+.. ..+|+|+.. +
T Consensus 2 ~Il-l~C~~GaSSs~la~k------------------m~~~a~~~gi-~~~i~a~~~~e~~~~~~~~Dvill~------P 55 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA------------------LNKGAKERGV-PLEAAAGAYGSHYDMIPDYDLVILA------P 55 (99)
T ss_pred EEE-EECCCCCCHHHHHHH------------------HHHHHHHCCC-cEEEEEeeHHHHHHhccCCCEEEEc------C
Confidence 445 568888666666655 5677777888 577777777776544 678988887 4
Q ss_pred cHHHHHHHHHhccccCeeEEEE
Q 022864 145 NYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
...-.++.+.+.+.+-|+-+..
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEE
Confidence 4455677788888887764443
No 342
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.56 E-value=0.84 Score=33.46 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----C-CCccEEEEcccccccc
Q 022864 72 CGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----E-ASYDRIYSIEMFEHMK 144 (291)
Q Consensus 72 cG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----~-~~~D~i~~~~~l~~~~ 144 (291)
||.|..+..+++.. .+..|+.+|.+++.++.+++ . .+.++.+|..+... . ..+|.|++...- .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~---d 73 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---GVEVIYGDATDPEVLERAGIEKADAVVILTDD---D 73 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---TSEEEES-TTSHHHHHHTTGGCESEEEEESSS---H
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---ccccccccchhhhHHhhcCccccCEEEEccCC---H
Confidence 56677777776643 24589999999997655543 3 36789999988531 2 678888775332 1
Q ss_pred cHHHHHHHHHhccccCeeEEEEee
Q 022864 145 NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 145 ~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.....+....+.+.|...+++...
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 223344455566778888776554
No 343
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.54 E-value=0.54 Score=35.26 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=49.4
Q ss_pred CCEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEcccc
Q 022864 64 GHTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMF 140 (291)
Q Consensus 64 ~~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l 140 (291)
..+|+|+|-|.=. .+..|.+. |..|+++|+.+. .+. . .+.++..|+.+.... ...|+|.|..+-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 3499999999654 56666666 799999999887 121 2 567999999986555 789999997655
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.. +...+-++.+ +-|.-+++...+.+
T Consensus 81 ~E---l~~~il~lA~--~v~adlii~pL~~e 106 (127)
T PF03686_consen 81 PE---LQPPILELAK--KVGADLIIRPLGGE 106 (127)
T ss_dssp TT---SHHHHHHHHH--HHT-EEEEE-BTTB
T ss_pred hH---HhHHHHHHHH--HhCCCEEEECCCCC
Confidence 33 3333444443 24566777665544
No 344
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.42 E-value=0.25 Score=43.59 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=49.9
Q ss_pred EEEEcCCcchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccccc
Q 022864 67 VLDVGCGWGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFEHM 143 (291)
Q Consensus 67 vLDiGcG~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~~~ 143 (291)
|+|+-||.|+++.-+.+. +.+ +.++|+++...+..+.+.. . .+..+|+.++... ..+|+++...+...+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 689999999999988765 565 4579999998777666542 2 3456788776532 468999887654433
No 345
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.37 E-value=0.52 Score=46.12 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC-------C-----CCEEEEEcCCH---HHHHHHH-----------HHHHH-----h
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY-------S-----NCKITGICNSK---TQKEFIE-----------EQCRV-----L 110 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~-------~-----~~~v~~vD~s~---~~~~~a~-----------~~~~~-----~ 110 (291)
.+.-+|+|+|=|+|.......+.+ | ..+++++|..| +.+..+. +.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 445799999999999766665433 2 24788999644 3332222 11111 1
Q ss_pred CC-------C--CeEEEEccccCCccC--CCccEEEEcccccc-ccc--HHHHHHHHHhccccCeeEEEE
Q 022864 111 EL-------Q--NVEIIVADISTFEME--ASYDRIYSIEMFEH-MKN--YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 111 ~~-------~--~v~~~~~d~~~~~~~--~~~D~i~~~~~l~~-~~~--~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+ . ++++..+|+.+.... ..+|+++....-.. -++ ...+++.+.++++|||++.-.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 21 1 345667888764322 56999998652211 122 257999999999999998753
No 346
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.30 E-value=1.5 Score=32.19 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=57.6
Q ss_pred CEEEEEcCCcch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC--CCccEEEEccccc
Q 022864 65 HTVLDVGCGWGS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME--ASYDRIYSIEMFE 141 (291)
Q Consensus 65 ~~vLDiGcG~G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~i~~~~~l~ 141 (291)
.+|.++|-|-=. .+..|+++ +..|+++|+++. ++ + ..++++..|+++.... ...|+|.|.-+-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY~~A~lIYSiRpp- 80 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TA---P-EGLRFVVDDITNPNISIYEGADLIYSIRPP- 80 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cC---c-ccceEEEccCCCccHHHhhCccceeecCCC-
Confidence 399999988654 46666665 799999999876 11 1 2678999999997655 778999986443
Q ss_pred ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
++....+-.+.+.+ |..+++...+
T Consensus 81 --pEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 81 --PELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred --HHHHHHHHHHHHhh--CCCEEEEecC
Confidence 33344444444432 4455554443
No 347
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.27 E-value=2.8 Score=34.76 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||-.|++ |..+..+++.+ .+.+|++++.+++..+.+.+..... .++.++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35689999885 44444444332 3789999999887665543333322 257888999887420 03
Q ss_pred CccEEEEccccccc---c--------------cHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHM---K--------------NYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~---~--------------~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..|.++.+...... . ....+++.+.+.++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877765532111 0 112345566667777887766543
No 348
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.14 E-value=0.81 Score=40.87 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=62.4
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEc-cccC-Cc--cCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVA-DIST-FE--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~-d~~~-~~--~~~ 129 (291)
+.....++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ ..|.+. +..... +..+ .. ...
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCC
Confidence 3345678999999997 3788888888776 8899999988886555432 234421 111111 1111 00 113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-.- . ...+....++|+++|.+++.
T Consensus 228 gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECC-----C--HHHHHHHHHHhccCCEEEEE
Confidence 578887531 1 23677788999999998764
No 349
>PRK11524 putative methyltransferase; Provisional
Probab=92.06 E-value=0.13 Score=44.64 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=39.1
Q ss_pred CeEEEEccccCCc--c-CCCccEEEEccccccc----------------ccHHHHHHHHHhccccCeeEEEE
Q 022864 114 NVEIIVADISTFE--M-EASYDRIYSIEMFEHM----------------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 114 ~v~~~~~d~~~~~--~-~~~~D~i~~~~~l~~~----------------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..++++|..+.. . .+++|+|+++.++... .-....+..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4567888888742 2 2789999998876421 11246889999999999999885
No 350
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=92.01 E-value=1 Score=32.08 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=48.1
Q ss_pred CEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEccccccc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHM 143 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~ 143 (291)
.+|| +-||+|..+..++++ .++.+++.|+ .+++...++.+.... ..+|+|+...-+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi--- 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQV--- 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchH---
Confidence 4666 669999777766654 4566677787 578888877765433 578999987433
Q ss_pred ccHHHHHHHHHhccccCee
Q 022864 144 KNYQNLLKKISKWMKEDTL 162 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~ 162 (291)
...+.++.+.+.+-|.
T Consensus 61 ---~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 61 ---AYMLPDLKKETDKKGI 76 (95)
T ss_pred ---HHHHHHHHHHhhhcCC
Confidence 4456666666665444
No 351
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.92 E-value=0.52 Score=42.61 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=55.0
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
++.+|+=+|+| .|..+...+... +++|+++|.+++..+.+... .+. .+.....+...+... ..+|+|+..-..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~---~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAE---FGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHh---cCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45689999998 456666666555 78999999988754433322 121 122111111121111 578999976433
Q ss_pred cccccHHHHHHHHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...+.+.-+-+...+.++||++++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111111112355567789998765433
No 352
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.92 E-value=0.91 Score=36.57 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=55.7
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CCeEEEEccccCCcc----------CCC
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL---QNVEIIVADISTFEM----------EAS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~----------~~~ 130 (291)
...|+.||||--.....+....++.+++-+|. |+.++.-++..+..+. .+.+++.+|+.+... +..
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 34999999999988888887655788899998 6667666666655432 235679999986321 134
Q ss_pred ccEEEEcccccccc--cHHHHHHH
Q 022864 131 YDRIYSIEMFEHMK--NYQNLLKK 152 (291)
Q Consensus 131 ~D~i~~~~~l~~~~--~~~~~l~~ 152 (291)
.-++++-+++.+++ ....+++.
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHH
Confidence 45778888888884 33444444
No 353
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.87 E-value=1.6 Score=38.33 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccCC---ccCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DISTF---EMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~---~~~~ 129 (291)
+.....++.+||=.|. |.|..+..+++.. +++|++++.+++..+.++ ..|.+.+ ..... +..+. ...+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhCCC
Confidence 4456778999998884 5788888888776 889999998888665553 3444211 11110 11110 0114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-. +. ...+....++|+++|+++..
T Consensus 207 gvdvv~d~-----~G--~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDN-----VG--GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEEC-----CC--HHHHHHHHHHhCcCcEEEEe
Confidence 58887753 11 12457788999999998864
No 354
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.86 E-value=0.75 Score=42.81 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHcC---CCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE
Q 022864 43 TLEDAEKAMLELYCERSR---LEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV 119 (291)
Q Consensus 43 ~l~~~~~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~ 119 (291)
.+..+....+..++.... .....+++|+-||.|+++.-+-... ...|.++|+++.+.+.-+.|... .+......
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~ 140 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFN 140 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCC--CCccceec
Confidence 444444445555443221 1225699999999999999887652 34567999999977666655421 11233445
Q ss_pred ccccCCcc-----------------C-CCccEEEEcccccc
Q 022864 120 ADISTFEM-----------------E-ASYDRIYSIEMFEH 142 (291)
Q Consensus 120 ~d~~~~~~-----------------~-~~~D~i~~~~~l~~ 142 (291)
+|+.++.. . ..+|+++...+...
T Consensus 141 ~DI~~i~~~~~~~~~~~~~~~~~~~~~p~~DvL~gGpPCQ~ 181 (467)
T PRK10458 141 EDIRDITLSHKEGVSDEEAAEHIRQHIPDHDVLLAGFPCQP 181 (467)
T ss_pred cChhhCccccccccchhhhhhhhhccCCCCCEEEEcCCCCc
Confidence 66665531 1 25798888665543
No 355
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.79 E-value=2.7 Score=36.82 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=60.5
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--cCCCccEEE
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE--MEASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~ 135 (291)
....++.+||-.||| .|..+..+++.. +.+|++++.+++..+.+++ .+.+. ++...-.... ..+.+|+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~--~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK----LGADE--VVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hCCcE--EeccCCcchHHhccCCCCEEE
Confidence 456778899999987 677777777765 7899999999987666532 23211 1111100100 124588887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....- ...+..+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 231 VTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 64211 235677788999999887653
No 356
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.56 E-value=2.8 Score=35.73 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=59.6
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhC-CCCeEEEEccccCCccCCCccEE
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLE-LQNVEIIVADISTFEMEASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~-~~~v~~~~~d~~~~~~~~~~D~i 134 (291)
.....++.+||-.|||. |..+..+++.. +.+ |++++.+++..+.+++ .| .+.+..... .......+|+|
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~~~~~~~d~v 163 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADTA---DEIGGRGADVV 163 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccch---hhhcCCCCCEE
Confidence 45567889999998874 66777777765 667 9999998887665443 23 111110000 11112468988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+....- ...+....+.|+++|.++..
T Consensus 164 l~~~~~------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 164 IEASGS------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEccCC------hHHHHHHHHHhcCCcEEEEE
Confidence 754211 23567778889999998764
No 357
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.38 E-value=4.1 Score=35.73 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC-----ccCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF-----EMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~ 129 (291)
......++.+||-+|+| .|..+..+++.. +.+ +++++.+++..+.+++ .+.+ .++..+-... ....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHHhcCC
Confidence 44566788999999876 366677777765 666 8999999887665533 3332 1222111111 1125
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+.... ....+..+.+.|+++|.++...
T Consensus 226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 6899986421 1346777788899999987644
No 358
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.36 E-value=0.8 Score=40.73 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc---CCccCCCc
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS---TFEMEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~---~~~~~~~~ 131 (291)
.....++.+||=.||| .|..+..+++.. +++ |++++.+++..+.++ +.|.+.+ .....+.. .......+
T Consensus 155 ~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 155 LAQGCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHhcCCCC
Confidence 3455678899999886 355666667665 665 789999888665543 3343211 11111111 11111356
Q ss_pred c-EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 D-RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D-~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
| +|+-. .. -...+....+.|++||.+++..
T Consensus 230 d~~v~d~-----~G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILET-----AG-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEEC-----CC-CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 44431 11 1346777889999999987753
No 359
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.33 E-value=1.3 Score=38.83 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
.++.+||=+||| .|.++..+++.. +++ |.++|.+++.++.+.+. . .+ |..+. ....+|+|+-...
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~----~-----~i--~~~~~-~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGY----E-----VL--DPEKD-PRRDYRAIYDASG 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhc----c-----cc--Chhhc-cCCCCCEEEECCC
Confidence 356789989986 567777777766 665 77788887765544321 1 11 11111 1246888875422
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
....++.+.+.|+++|++++...
T Consensus 210 ------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------CHHHHHHHHHhhhcCcEEEEEee
Confidence 13467778889999999887543
No 360
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.29 E-value=2.5 Score=37.64 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcc---ccC----CccC
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVAD---IST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d---~~~----~~~~ 128 (291)
.....++.+||=+|||. |..+..+++.. +++|+++|.+++.++.+++ .|.+. +.....+ +.+ ....
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKA 235 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhccc
Confidence 35567899999999964 66777777766 7799999999987766643 34321 1111111 111 0001
Q ss_pred CCcc----EEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYD----RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D----~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+| +|+- ... ....++...++|++||++++..
T Consensus 236 ~g~d~~~d~v~d-----~~g-~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 236 RGLRSTGWKIFE-----CSG-SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCCcCEEEE-----CCC-ChHHHHHHHHHHhcCCeEEEEC
Confidence 2344 4432 111 1345666778899999987754
No 361
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.29 E-value=1.1 Score=38.68 Aligned_cols=89 Identities=21% Similarity=0.153 Sum_probs=54.0
Q ss_pred CEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccc
Q 022864 65 HTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 65 ~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~ 142 (291)
.+|+=+|.| -|.+++.+.+......+++.|.+....+.+.+ .|+ .....+..........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv---~d~~~~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGV---IDELTVAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCc---ccccccchhhhhcccCCEEEEeccHH-
Confidence 578888877 35677777766556678999998886544432 222 12211111011125579999876664
Q ss_pred cccHHHHHHHHHhccccCeeE
Q 022864 143 MKNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l 163 (291)
....+++++...|++|..+
T Consensus 76 --~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 76 --ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred --HHHHHHHHhcccCCCCCEE
Confidence 3456777777777777643
No 362
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=91.19 E-value=1.6 Score=38.19 Aligned_cols=98 Identities=20% Similarity=0.276 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccC-C--ccCCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIST-F--EMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~-~--~~~~~ 130 (291)
......++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++ .|.+.+ .....|+.+ + .....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHCCCC
Confidence 3455678899998883 5777888888776 8899999988886555543 444221 111111111 0 01145
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+-. . . ...+....++|+++|.++..
T Consensus 212 vd~vld~--~---g--~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDN--V---G--GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEEC--C---C--HHHHHHHHHhhccCCEEEEE
Confidence 7887743 1 1 24567888999999998764
No 363
>PLN02740 Alcohol dehydrogenase-like
Probab=91.17 E-value=2.6 Score=38.16 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-----ccC-Cc--
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-----IST-FE-- 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~-~~-- 126 (291)
+.....++.+||=+||| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. ++... +.+ +.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKE----MGITD--FINPKDSDKPVHERIREM 264 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHH----cCCcE--EEecccccchHHHHHHHH
Confidence 34566789999999986 455666677666 66 69999999987666643 34421 22111 111 00
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
..+.+|+|+-... ....+....+.+++| |.+++..
T Consensus 265 ~~~g~dvvid~~G------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFECAG------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEECCC------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 0125888875322 124566777788886 8876643
No 364
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=91.01 E-value=0.62 Score=40.56 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=49.0
Q ss_pred EEEEcCCcchHHHHHH-HHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccC--------CccCCCccEEEE
Q 022864 67 VLDVGCGWGSLSLYIA-QKYSNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADIST--------FEMEASYDRIYS 136 (291)
Q Consensus 67 vLDiGcG~G~~~~~la-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~--------~~~~~~~D~i~~ 136 (291)
-+|||.|.--+--.+- ..+ +....++|++...+..|++++.++++ +.+.+++....+ ...+..||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 4788776543322222 223 56789999999999999999999888 356665553322 122245999999
Q ss_pred ccccc
Q 022864 137 IEMFE 141 (291)
Q Consensus 137 ~~~l~ 141 (291)
+.+|.
T Consensus 185 NPPFf 189 (419)
T KOG2912|consen 185 NPPFF 189 (419)
T ss_pred CCchh
Confidence 98763
No 365
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=90.83 E-value=4.7 Score=35.17 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=59.5
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
......++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++ .|.+.+. +.........+|+|+
T Consensus 149 ~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~~----~~~~~~~~~~~d~vi 219 (319)
T cd08242 149 EQVPITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR----LGVETVL----PDEAESEGGGFDVVV 219 (319)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEe----CccccccCCCCCEEE
Confidence 44566788899998765 344555556555 7889999999887666654 3442111 111112225689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
... . -...+..+.++|+++|.++.
T Consensus 220 d~~-----g-~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EAT-----G-SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECC-----C-ChHHHHHHHHHhhcCCEEEE
Confidence 641 1 13456777888999999886
No 366
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.76 E-value=0.78 Score=40.73 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=54.9
Q ss_pred CCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---C-CccEEEEccc
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---A-SYDRIYSIEM 139 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~-~~D~i~~~~~ 139 (291)
..+++|+-||.|++..-+.... -.-+.++|+++..++.-+.+.. ...++..|+...... . .+|+++...+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhccccCCCEEEeCCC
Confidence 4689999999999998887662 2356799999998777666543 245677888775543 2 7899999887
Q ss_pred cccc
Q 022864 140 FEHM 143 (291)
Q Consensus 140 l~~~ 143 (291)
.+.+
T Consensus 77 CQ~F 80 (328)
T COG0270 77 CQDF 80 (328)
T ss_pred Ccch
Confidence 7655
No 367
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.73 E-value=2.7 Score=37.73 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCcc-CCCccEEEEc
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEM-EASYDRIYSI 137 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~-~~~~D~i~~~ 137 (291)
..++.+||=.|+| .|..+..+++.. ++++++++.++..... .+++.|.+. ++. .+...... .+.+|+|+-.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~---~~~~~Ga~~--vi~~~~~~~~~~~~~~~D~vid~ 254 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDE---AINRLGADS--FLVSTDPEKMKAAIGTMDYIIDT 254 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhh---HHHhCCCcE--EEcCCCHHHHHhhcCCCCEEEEC
Confidence 4578899999986 466777777766 7889888877653222 222334321 111 11111110 1347877743
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.. ....++...+.|++||.++...
T Consensus 255 ~g------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 255 VS------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CC------CHHHHHHHHHHhcCCcEEEEeC
Confidence 21 1235677888999999987643
No 368
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=90.71 E-value=1.1 Score=32.00 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred EcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccccccccHHH
Q 022864 70 VGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMFEHMKNYQN 148 (291)
Q Consensus 70 iGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l~~~~~~~~ 148 (291)
+-||+|..+..++++ +++.+++.|+ .+++...++.+.... ..+|+|++.. +...
T Consensus 4 ~~Cg~G~sTS~~~~k------------------i~~~~~~~~~-~~~v~~~~~~~~~~~~~~~Diil~~P------qv~~ 58 (96)
T cd05564 4 LVCSAGMSTSILVKK------------------MKKAAEKRGI-DAEIEAVPESELEEYIDDADVVLLGP------QVRY 58 (96)
T ss_pred EEcCCCchHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhcCCCCEEEECh------hHHH
Confidence 458888877766654 4667777787 578888887776433 6799999873 3445
Q ss_pred HHHHHHhccccCee
Q 022864 149 LLKKISKWMKEDTL 162 (291)
Q Consensus 149 ~l~~~~~~LkpgG~ 162 (291)
.+.++.+.+.+.+.
T Consensus 59 ~~~~i~~~~~~~~~ 72 (96)
T cd05564 59 MLDEVKKKAAEYGI 72 (96)
T ss_pred HHHHHHHHhccCCC
Confidence 56666665544444
No 369
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.37 E-value=2.6 Score=38.52 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..+.+|+=+|+|. |......++.+ +++|+++|.++.....+ ...|. .+ .+..+.. ...|+|++..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A----~~~G~---~v--~~leeal--~~aDVVItaT-- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEA----AMDGF---RV--MTMEEAA--KIGDIFITAT-- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHH----HhcCC---Ee--CCHHHHH--hcCCEEEECC--
Confidence 5789999999996 44444445444 88999999988643222 22232 22 2222211 4579987642
Q ss_pred cccccHHHHHH-HHHhccccCeeEEEEee
Q 022864 141 EHMKNYQNLLK-KISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 168 (291)
....++. .....+|+|++++...-
T Consensus 259 ----G~~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ----CCHHHHHHHHHhcCCCCcEEEEECC
Confidence 2244454 47788999998876543
No 370
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.06 E-value=3.9 Score=32.32 Aligned_cols=96 Identities=8% Similarity=-0.021 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCC---c--cCCCccEEEE
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTF---E--MEASYDRIYS 136 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~D~i~~ 136 (291)
.++.+|+-|||=+-.....- ...++.+++..|.+... ...+- + .|+.=|.... + ..++||+|++
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~~-~-~F~fyD~~~p~~~~~~l~~~~d~vv~ 92 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFGG-D-EFVFYDYNEPEELPEELKGKFDVVVI 92 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcCC-c-ceEECCCCChhhhhhhcCCCceEEEE
Confidence 35689999999765443332 12357799999997763 22222 2 4555555542 1 1278999999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..++-.-+-..+....++.++|+++.+++.+.
T Consensus 93 DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 93 DPPFLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 99993333344566677777789899888664
No 371
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.97 E-value=0.65 Score=42.03 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=51.5
Q ss_pred hCCCCeEEEEccccCCcc---CCCccEEEEcccccccc--cHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 110 LELQNVEIIVADISTFEM---EASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 110 ~~~~~v~~~~~d~~~~~~---~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.++++++++.+++.+... ++++|.++....+.+++ ...+.++.+.+.++|||++++-+...+
T Consensus 272 ~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 345789999999998642 48999999999999994 567899999999999999999766543
No 372
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.88 E-value=1.5 Score=38.86 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc-------ccCCc
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD-------ISTFE 126 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d-------~~~~~ 126 (291)
......++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++ .+.+.+ .....+ +....
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 455667889999988764 66777777776 666 8999888887665543 233211 111111 11111
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+|+|+....- ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 12458999864221 235677888999999987543
No 373
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.85 E-value=4 Score=32.81 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=60.9
Q ss_pred EEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hC----------CCCeEEEEccccCCc
Q 022864 66 TVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LE----------LQNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~----------~~~v~~~~~d~~~~~ 126 (291)
+|.=+|+|+=+ ++..++.. |.+|+.+|.+++.++.+++.+.. .+ +.++.+ ..|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH-
Confidence 45668888643 33334433 89999999999999888876654 11 123443 3555544
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
...|+|+=. +.+.++-..++++++.+.+.|+-.|...+.+.
T Consensus 77 --~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 77 --VDADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --CTESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 357877753 34555666889999999999999887755443
No 374
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.83 E-value=5 Score=33.83 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 129 (291)
.++++|=.|+ +|..+..+++.+ .+.+|+.++.++...+.........+. ++.++.+|+.+...- .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678888885 455555555442 378999999988776666555444333 678889999874211 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 67999887643
No 375
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.68 E-value=3.1 Score=36.09 Aligned_cols=76 Identities=24% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.|..||==|.|.|. .+..++++ ++++...|++++..+...+.+++.| ++....+|+.+.. .+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57788888888774 56667766 7899999999999888888887765 6888899998853 12
Q ss_pred CCccEEEEcccccc
Q 022864 129 ASYDRIYSIEMFEH 142 (291)
Q Consensus 129 ~~~D~i~~~~~l~~ 142 (291)
+..|+++.+..+-+
T Consensus 113 G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 113 GDVDILVNNAGIVT 126 (300)
T ss_pred CCceEEEecccccc
Confidence 68899998875533
No 376
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.48 E-value=2.3 Score=34.37 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 51 MLELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
+.+.+........+.+||-+|.- +|.+...+..+ .++|+.+|+.|.+..... ++++|... .. .+++
T Consensus 32 K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp--------~~v~Fr~~--~~-~~~G 98 (254)
T COG4017 32 KYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP--------NNVKFRNL--LK-FIRG 98 (254)
T ss_pred HHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC--------CCccHhhh--cC-CCCC
Confidence 34444433445678899999986 78887777766 789999999998532211 25666544 11 2237
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.+|+|+-..-+..+. +++++ -++| +.+++.+|...
T Consensus 99 ~~DlivDlTGlGG~~--Pe~L~----~fnp-~vfiVEdP~gn 133 (254)
T COG4017 99 EVDLIVDLTGLGGIE--PEFLA----KFNP-KVFIVEDPKGN 133 (254)
T ss_pred ceeEEEeccccCCCC--HHHHh----ccCC-ceEEEECCCCC
Confidence 899999876665553 33333 3455 45667666543
No 377
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.47 E-value=1.3 Score=39.00 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcccc----CCccCCC
Q 022864 57 ERSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIS----TFEMEAS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~----~~~~~~~ 130 (291)
......++.+||-.|+|. |..+..+++.. +.+|+++..+++..+.+++ .+.+. +.....++. .......
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEG 227 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCC
Confidence 344567888999998874 77777888775 8899999888887665533 23221 111111111 1111245
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+++.... -...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 899887521 134567788899999997754
No 378
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.41 E-value=2.2 Score=37.74 Aligned_cols=99 Identities=15% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc-cccCC-c--cCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVA-DISTF-E--MEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~-~--~~~ 129 (291)
+.....++.+||=.|+ |.|..+..+++.. +++|++++.+++..+.+++. .|.+.+ ..... +..+. . ...
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCC
Confidence 3346678999999986 5777888888776 88999999888865555432 344221 11111 21110 0 114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+-. +. ...+....++|+++|.++..
T Consensus 221 gvd~v~d~-----~g--~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDN-----VG--GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEEC-----CC--HHHHHHHHHHhccCcEEEEe
Confidence 57887753 12 24577888999999998764
No 379
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.05 E-value=1.3 Score=34.40 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=31.9
Q ss_pred EEcCCcc--hHHHHHH--HHCCCCEEEEEcCCHHHHHHHHHH--HHHhCC-CCeEEEEccc
Q 022864 69 DVGCGWG--SLSLYIA--QKYSNCKITGICNSKTQKEFIEEQ--CRVLEL-QNVEIIVADI 122 (291)
Q Consensus 69 DiGcG~G--~~~~~la--~~~~~~~v~~vD~s~~~~~~a~~~--~~~~~~-~~v~~~~~d~ 122 (291)
|+|+..| .....+. ...++.+|+++|++|..++..+++ +..+.. ..+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 345678999999999999988888 444322 1355554443
No 380
>PLN02827 Alcohol dehydrogenase-like
Probab=89.05 E-value=3.1 Score=37.62 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=57.3
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEE--ccccCC-c--cCCC
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIV--ADISTF-E--MEAS 130 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~--~d~~~~-~--~~~~ 130 (291)
....++.+||-.|+| .|..+..+++.. ++ .|+++|.+++..+.++ ..|.+.+ .... .++... . ..+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCcEEEcccccchHHHHHHHHHhCCC
Confidence 456789999999886 355666667665 66 6889998888665553 3444211 1110 011110 0 0135
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccC-eeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~ 166 (291)
+|+|+-... ....+....+.|++| |++++.
T Consensus 264 ~d~vid~~G------~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 264 ADYSFECVG------DTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCEEEECCC------ChHHHHHHHHhhccCCCEEEEE
Confidence 788775321 123566777888998 998764
No 381
>PLN02494 adenosylhomocysteinase
Probab=88.95 E-value=2.2 Score=39.66 Aligned_cols=100 Identities=7% Similarity=-0.011 Sum_probs=59.0
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCC
Q 022864 52 LELYCERSRL-EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEA 129 (291)
Q Consensus 52 ~~~~~~~~~~-~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 129 (291)
++.+++..+. ..+.+|+=+|+|. |......++.+ +++|+++|.++.....+ ...|. .+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA----~~~G~---~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQA----LMEGY---QVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHH----HhcCC---eec--cHHHHH--h
Confidence 4444444333 4689999999994 44444444445 78999999988643222 22233 221 222211 4
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..|+|+....- ..-+.....+.||+||+++...-
T Consensus 309 ~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcCC
Confidence 67999873221 22234667888999999877543
No 382
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.85 E-value=0.45 Score=37.81 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccc---------------cCC-
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADI---------------STF- 125 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---------------~~~- 125 (291)
++.+|+=+|.| .|.-+..++... +++++..|..+...+... ..+...+.....+- ...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLE----SLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHH----HTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhh----cccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 56899999999 466777777776 899999999888554433 22221222210000 000
Q ss_pred -ccC---CCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022864 126 -EME---ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 126 -~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.+. ..+|+|+.+..+..-..+.-+-++..+.||||..++
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 011 468999887666444444445566778888777554
No 383
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.84 E-value=5.4 Score=35.54 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc-------cCCccCCCc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI-------STFEMEASY 131 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~-------~~~~~~~~~ 131 (291)
.++.+||=.|+| .|..+..+++.. ++ +|++++.+++..+.++ ..|.+.+ .....+. .+......+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 378889988875 355566667665 77 8999998887654443 3344221 1111111 111112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+....- ...+....+.|+++|+++...
T Consensus 251 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 251 DVVIEASGH------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred cEEEECCCC------hHHHHHHHHHhccCCEEEEEc
Confidence 988854211 235667788999999987643
No 384
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.64 E-value=1.9 Score=39.05 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=46.9
Q ss_pred CEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC----CCccEEEEccc
Q 022864 65 HTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME----ASYDRIYSIEM 139 (291)
Q Consensus 65 ~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~D~i~~~~~ 139 (291)
++||=|||| .|........+....+|+..|-|.+..+.+.. ....+++..+.|+.+.+.- ..+|+|++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~----~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAE----LIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh----hccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 589999996 34433333222223799999999886544433 2223788999999886321 56799988654
Q ss_pred c
Q 022864 140 F 140 (291)
Q Consensus 140 l 140 (291)
.
T Consensus 78 ~ 78 (389)
T COG1748 78 P 78 (389)
T ss_pred c
Confidence 3
No 385
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.58 E-value=9.1 Score=33.45 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcccc
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIEMF 140 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~~l 140 (291)
.+.+|+=+|+|. |......++.. +++|+++|.++...+.+ ...|. .+. +..++... ..+|+|+..-+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~----~~~G~---~~~--~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARI----TEMGL---SPF--HLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH----HHcCC---eee--cHHHHHHHhCCCCEEEECCCh
Confidence 588999999984 33333444444 78999999998754333 33333 222 12222211 578999985322
Q ss_pred cccccHHHHHHHHHhccccCeeEEE
Q 022864 141 EHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 141 ~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.-+-+.+.+.++||++++-
T Consensus 221 ------~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 221 ------LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred ------hhhhHHHHHcCCCCcEEEE
Confidence 1233456677889876553
No 386
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.54 E-value=1.7 Score=37.06 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccccccccHHHHHHHHHhc
Q 022864 77 LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHMKNYQNLLKKISKW 156 (291)
Q Consensus 77 ~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~ 156 (291)
++..|.+..+..+|+|+|.++..++.+. +.|+ +.-...+.... ..+|+|+..-+.. ....+++++...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~----~~g~--~~~~~~~~~~~---~~~DlvvlavP~~---~~~~~l~~~~~~ 68 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL----ELGI--IDEASTDIEAV---EDADLVVLAVPVS---AIEDVLEEIAPY 68 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH----HTTS--SSEEESHHHHG---GCCSEEEE-S-HH---HHHHHHHHHHCG
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH----HCCC--eeeccCCHhHh---cCCCEEEEcCCHH---HHHHHHHHhhhh
Confidence 3566777766799999999999765554 3454 11222221111 4579999877664 345667777777
Q ss_pred cccCeeE
Q 022864 157 MKEDTLL 163 (291)
Q Consensus 157 LkpgG~l 163 (291)
+++|+.+
T Consensus 69 ~~~~~iv 75 (258)
T PF02153_consen 69 LKPGAIV 75 (258)
T ss_dssp S-TTSEE
T ss_pred cCCCcEE
Confidence 7766543
No 387
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.45 E-value=5.8 Score=35.58 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=59.2
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcc--ccC-Cc--cC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVAD--IST-FE--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d--~~~-~~--~~ 128 (291)
+.....++.+||=+|+| .|..+..+++.. ++ +|+++|.++...+.+++ .|.+.+ .....+ +.+ +. ..
T Consensus 178 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC
Confidence 34456788999999876 355666677666 66 79999998887666543 343211 111100 001 00 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
..+|+|+-... ....+....+.|+++ |.+++..
T Consensus 253 ~g~d~vid~~g------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTG------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCC------ChHHHHHHHHhcccCCCEEEEEc
Confidence 45888875321 134567778889885 8887654
No 388
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.37 E-value=4.8 Score=34.87 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=57.4
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh--------CC----------CCeEEEEccccC
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL--------EL----------QNVEIIVADIST 124 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~----------~~v~~~~~d~~~ 124 (291)
.+|.=||+|.-+ ++..++.. +.+|+.+|.+++.++.+++..... .+ .++.+ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 478888998543 33444433 789999999999888877653211 01 12222 233322
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
. -...|+|+..-+ +...-...+++++...++++..+..
T Consensus 81 a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 A--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred H--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1 146788887533 2233356788888888887776544
No 389
>PRK07109 short chain dehydrogenase; Provisional
Probab=88.31 E-value=7.9 Score=34.34 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+.+||=.|++. .++..+++.+ .+++|+.++.+++.++...+.++..+. ++.++.+|+.+... -+
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 356788887644 4444443321 278999999988877666665555554 68888999877431 04
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68999876643
No 390
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=88.30 E-value=4.1 Score=36.57 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=59.8
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEc--cccCCc---cC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVA--DISTFE---ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~~~~~---~~ 128 (291)
+....+++.+||=+|+| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. +..... ++.+.. ..
T Consensus 180 ~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 180 NTAKVEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHhC
Confidence 44556789999999875 455666677665 67 79999999987665543 34421 111111 111100 11
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
+.+|+|+-.. . ....+....+.|+++ |.+++..
T Consensus 255 ~g~d~vid~~-----g-~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECI-----G-NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECC-----C-ChHHHHHHHHhhccCCCeEEEEc
Confidence 3588887531 1 134667778889887 8877643
No 391
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=88.23 E-value=1.8 Score=38.26 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=59.6
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEcc---ccCCccCCCc
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQN-VEIIVAD---ISTFEMEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d---~~~~~~~~~~ 131 (291)
.....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.++ ..+... +...... +........+
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHhCCCCC
Confidence 34566788999998765 66777777665 776 999998887655443 233311 1111001 1111111458
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+... .....+..+.++|+++|.++...
T Consensus 229 d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 9988641 11345677889999999976643
No 392
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.14 E-value=1.7 Score=38.95 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=64.6
Q ss_pred HcCCCCCCEEEEEcCCcchHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccE
Q 022864 58 RSRLEDGHTVLDVGCGWGSLSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDR 133 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~ 133 (291)
.+...++.+|+|..|-.|.-+.+++...+ ..++.++|.+..-.+..++..+..|...++...+|+...+.+ .....
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 34567789999999999999888887643 568999999999999999999999987788888888875333 34455
Q ss_pred EEEcccc
Q 022864 134 IYSIEMF 140 (291)
Q Consensus 134 i~~~~~l 140 (291)
|++.++.
T Consensus 288 iL~Dpsc 294 (413)
T KOG2360|consen 288 ILVDPSC 294 (413)
T ss_pred EEeCCCC
Confidence 5554433
No 393
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.06 E-value=3.6 Score=33.28 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=52.5
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHH------------HHHhC-CCCeEEEEccccCCccCC
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQ------------CRVLE-LQNVEIIVADISTFEMEA 129 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~------------~~~~~-~~~v~~~~~d~~~~~~~~ 129 (291)
++|-=+|.|- |. .+..+++. |.+|+|+|++++-++..++- .++.. -.++.+. .|..... .
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai--~ 75 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI--K 75 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH--H
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh--h
Confidence 4677788884 43 34445544 89999999999987766531 11100 0133332 2333211 3
Q ss_pred CccEEEEcccccc-------cccHHHHHHHHHhccccCeeEEEEeec
Q 022864 130 SYDRIYSIEMFEH-------MKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 130 ~~D~i~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
..|+++..-.... +....++++.+.+.|+++..+++.+..
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 4677765442221 123577899999999998877775443
No 394
>PRK12939 short chain dehydrogenase; Provisional
Probab=88.05 E-value=7.1 Score=32.47 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 129 (291)
+++++|=.|+ +|..+..+++.+ .+.+|++++.+++......+.....+ .++.++.+|+.+... . +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678886665 455555554432 27899999988876665555444333 268888999987431 0 3
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|+|+.+..
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 6898887653
No 395
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.97 E-value=6.3 Score=35.93 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=60.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cccC----CccC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DIST----FEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~----~~~~ 128 (291)
.....++.+||=.|+| .|..+..+++.. +++ ++.+|.+++..+.+++ .|.+ .+... +..+ ....
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 180 TAGVGPGSTVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHcCC
Confidence 3456778888888886 455666677665 555 6667888876555543 3442 12111 1111 1111
Q ss_pred CCccEEEEcccccc-------c-ccHHHHHHHHHhccccCeeEEEEee
Q 022864 129 ASYDRIYSIEMFEH-------M-KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 129 ~~~D~i~~~~~l~~-------~-~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..+|+|+-.---.. . .+....++...+.+++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 45888875332210 0 1223578888899999999887554
No 396
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=87.87 E-value=2.2 Score=37.67 Aligned_cols=96 Identities=17% Similarity=0.354 Sum_probs=58.2
Q ss_pred CCCCC--CEEEEEcC--CcchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCC---ccCCC
Q 022864 60 RLEDG--HTVLDVGC--GWGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTF---EMEAS 130 (291)
Q Consensus 60 ~~~~~--~~vLDiGc--G~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~---~~~~~ 130 (291)
...++ .+||=.|+ |.|..+..+++.. ++ +|++++.+++..+.+++. .|.+.+ .....++.+. ..+..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELCPEG 224 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHCCCC
Confidence 34544 89998885 5778888888776 77 899999988865555432 344221 1111111110 01146
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+|+... .. ..+....++|+++|.++..
T Consensus 225 vd~vid~~-----g~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 225 VDVYFDNV-----GG--EISDTVISQMNENSHIILC 253 (345)
T ss_pred ceEEEECC-----Cc--HHHHHHHHHhccCCEEEEE
Confidence 88887531 11 1356778899999998764
No 397
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.87 E-value=6.8 Score=37.49 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=49.6
Q ss_pred cCCCCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHh-----CC---CCeEEEEccccCCcc-
Q 022864 59 SRLEDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVL-----EL---QNVEIIVADISTFEM- 127 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~---~~v~~~~~d~~~~~~- 127 (291)
.+...+.+||-.|+ +|.++..+++.+ .|.+|++++.+........+..... +. .++.++.+|+.+...
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34456778887776 455555554432 3789999998887655443333221 11 258889999987431
Q ss_pred --C-CCccEEEEcc
Q 022864 128 --E-ASYDRIYSIE 138 (291)
Q Consensus 128 --~-~~~D~i~~~~ 138 (291)
. +..|+||++.
T Consensus 154 ~~aLggiDiVVn~A 167 (576)
T PLN03209 154 GPALGNASVVICCI 167 (576)
T ss_pred HHHhcCCCEEEEcc
Confidence 1 5689988764
No 398
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.42 E-value=5.7 Score=36.58 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
..+.+|+=+|+|. |......++.. +++|+.+|.++.....+ ...|. .+ .++.+.. ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A----~~~G~---~v--~~l~eal--~~aDVVI~aT-- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQA----AMDGF---RV--MTMEEAA--ELGDIFVTAT-- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHH----HhcCC---Ee--cCHHHHH--hCCCEEEECC--
Confidence 3789999999985 33333334444 78999999988743222 12232 22 2222221 4689998742
Q ss_pred cccccHHHHHH-HHHhccccCeeEEEEe
Q 022864 141 EHMKNYQNLLK-KISKWMKEDTLLFVHH 167 (291)
Q Consensus 141 ~~~~~~~~~l~-~~~~~LkpgG~l~~~~ 167 (291)
....++. .....+|+|++++...
T Consensus 276 ----G~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 276 ----GNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ----CCHHHHHHHHHhcCCCCCEEEEcC
Confidence 2233554 6788899999887643
No 399
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.37 E-value=9.7 Score=33.49 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
..++.+|+-+|+|. |.............+|+.++.+++... +.+...+. .... ..+.... ..+|+|++.-
T Consensus 175 ~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~---~la~~~g~---~~~~--~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 175 NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE---ELAKELGG---NAVP--LDELLELLNEADVVISAT 246 (311)
T ss_pred CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH---HHHHHcCC---eEEe--HHHHHHHHhcCCEEEECC
Confidence 34689999999974 333222222222468999999876432 22223332 2222 1122111 5689999876
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
.-.+. ...+..+....+.++.+++...
T Consensus 247 ~~~~~---~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHY---AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCch---HHHHHHHHhhCCCCCeEEEEeC
Confidence 65433 3334444333333556666443
No 400
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.35 E-value=10 Score=33.13 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=57.7
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEE
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~ 135 (291)
......++.+||=.||| .|..+..+++.. +.++++++.+++..+.++ ..|.+ .++. .... ....+|+++
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~----~~g~~--~~~~--~~~~-~~~~vD~vi 230 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAR----ELGAD--WAGD--SDDL-PPEPLDAAI 230 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHH----HhCCc--EEec--cCcc-CCCcccEEE
Confidence 34456778888888776 334445555554 789999998887555443 33431 1111 1111 224588877
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..... ...++.+.+.|+++|.++...
T Consensus 231 ~~~~~------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 231 IFAPV------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence 53211 246788899999999988643
No 401
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=87.26 E-value=8.1 Score=32.86 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=53.8
Q ss_pred cCCCCCCEEEEEcCCcch----HHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccE
Q 022864 59 SRLEDGHTVLDVGCGWGS----LSLYIAQKYS-NCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDR 133 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG~G~----~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 133 (291)
+..+.++|||-+|.|+-. -+..|.+-+| ++-++-.|+..-. . +.-..+.+|...+..+.++|+
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v--------S----Da~~~~~~Dc~t~~~~~k~Dl 124 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV--------S----DADQSIVGDCRTYMPPDKFDL 124 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEESS-EEE
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc--------c----ccCCceeccccccCCCCcccE
Confidence 345789999999998532 3455555564 5667777874431 1 123456799999888899999
Q ss_pred EEEccc---cccc--------ccHHHHHHHHHhccccCeeEEEEee
Q 022864 134 IYSIEM---FEHM--------KNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 134 i~~~~~---l~~~--------~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
|+|..- ...+ .-..-+..-++..|+=||.+++-..
T Consensus 125 IiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiT 170 (299)
T PF06460_consen 125 IISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKIT 170 (299)
T ss_dssp EEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEee
Confidence 999643 1111 1123455667788999999998665
No 402
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.12 E-value=4.2 Score=37.20 Aligned_cols=100 Identities=10% Similarity=0.127 Sum_probs=59.3
Q ss_pred cCCCCCCEEEEEc-CC-cchHHHHHHHHCC-C-CEEEEEcCCHHHHHHHHHHHHHh----CCCCeEEEEc----cccC--
Q 022864 59 SRLEDGHTVLDVG-CG-WGSLSLYIAQKYS-N-CKITGICNSKTQKEFIEEQCRVL----ELQNVEIIVA----DIST-- 124 (291)
Q Consensus 59 ~~~~~~~~vLDiG-cG-~G~~~~~la~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~v~~~~~----d~~~-- 124 (291)
...+++.+||=+| +| .|..+..+++... + .+|+++|.+++.++.+++..... |. ...++.. ++..
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga-~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI-ELLYVNPATIDDLHATL 249 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc-eEEEECCCccccHHHHH
Confidence 4557788999887 34 6777777777641 2 37999999999887776642111 21 1111211 1111
Q ss_pred --CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEE
Q 022864 125 --FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 125 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
......+|+|+.... ....+....+.++++|.+++
T Consensus 250 ~~~t~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 250 MELTGGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHhCCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEE
Confidence 111146888876321 13467778888998887655
No 403
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.01 E-value=15 Score=30.56 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCccC-----------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEME----------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----------- 128 (291)
.+.++|-.|+. |.++..+++.+ .+.+|++++.+.. ..+......+..+. ++.++.+|+.+...-
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG-RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 35688888864 34444444332 3778988876532 23333333333332 578888998874310
Q ss_pred CCccEEEEccccccc-------------ccHHHHHHHHHhccccCeeEEEE
Q 022864 129 ASYDRIYSIEMFEHM-------------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~-------------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..|+++.+...... .....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357888766532110 11345677777777666765554
No 404
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=86.97 E-value=9.8 Score=32.19 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=78.1
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCCCccEEEEcccccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~D~i~~~~~l~~ 142 (291)
|..-||+-.++..+.+. .-++.++++-|+-....++++. +..++.+..+|-.. ++++++=-+|+...+++-
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 88999999888888765 6789999999998888887775 33489999988754 344466789999999998
Q ss_pred cccHHHHHHHHHhccc--cCeeEEEEeec
Q 022864 143 MKNYQNLLKKISKWMK--EDTLLFVHHFC 169 (291)
Q Consensus 143 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~~ 169 (291)
-.+++.+++.+.+.++ ++|+..+=-|.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPi 197 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPI 197 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEee
Confidence 8899998888888887 68877764443
No 405
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.96 E-value=5 Score=35.52 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=60.1
Q ss_pred CCEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hCC------CCeEEEEccccCCccC
Q 022864 64 GHTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL------QNVEIIVADISTFEME 128 (291)
Q Consensus 64 ~~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~------~~v~~~~~d~~~~~~~ 128 (291)
-.+|-=||+|+= .++..++.. |.+|+..|.+++.++.++..... .++ .++.+. .++.+. -
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a--v 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC--V 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH--h
Confidence 357889999853 344445544 89999999999987766553321 221 122222 122111 1
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...|+|+-+ +.+.+.-...+++++.+.++|+.+|...+
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 567888764 44444455778999999999988554433
No 406
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.79 E-value=9.7 Score=33.04 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=57.8
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------CC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------EL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~----------~~v~~~~~d~~~~ 125 (291)
.+|.=||+|.-+ ++..++.. +.+|+.+|.+++.++.+.+..... +. .++.+. .|....
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHHh
Confidence 578889998543 44444443 789999999999888765433221 21 123322 233221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...|+|+..- .+...-...+++.+...++|+..++..+
T Consensus 82 ---~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 82 ---ADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred ---cCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 4678888752 2121224567888989999988765433
No 407
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.77 E-value=10 Score=32.72 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHH-HHHHHHHHHHHhCCCCeEEEEccccCCccC----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKT-QKEFIEEQCRVLELQNVEIIVADISTFEME---------- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------- 128 (291)
.++++|-.|++.|. ++..++++ +.+|+.++.++. ..+.........+. ++.++.+|+.+...-
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGV-KCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888865432 33344443 789998887642 23333333333332 678889998774310
Q ss_pred -CCccEEEEcccccc----cc----------------cHHHHHHHHHhccccCeeEEEEe
Q 022864 129 -ASYDRIYSIEMFEH----MK----------------NYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 -~~~D~i~~~~~l~~----~~----------------~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
...|+|+.+..... +. ....+++.+.+.++++|.+++..
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 36798886543211 10 12235555666667777766544
No 408
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.77 E-value=2 Score=37.98 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=58.2
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCCc
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~~~ 131 (291)
....++.+||-.|+| .|..+..+++.. +. .+++++.++...+.+++ .+.+. +.....++.+ ......+
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 345678899998876 467777778776 64 78888887766554443 23211 1111111111 1112568
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+....- ...+....+.|+++|.++..
T Consensus 238 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988753211 24677788899999987754
No 409
>PRK13699 putative methylase; Provisional
Probab=86.74 E-value=0.71 Score=38.69 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred EEEEccccCC--ccC-CCccEEEEcccccc---------c------ccHHHHHHHHHhccccCeeEEEE
Q 022864 116 EIIVADISTF--EME-ASYDRIYSIEMFEH---------M------KNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 116 ~~~~~d~~~~--~~~-~~~D~i~~~~~l~~---------~------~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+++++|..+. ..+ +++|+|+...+..- + .-....+.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4567777654 223 78888888876631 0 11346889999999999988763
No 410
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=86.64 E-value=4.5 Score=36.56 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE-ccccCCcc-CCCccEEEEcc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIV-ADISTFEM-EASYDRIYSIE 138 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~-~d~~~~~~-~~~~D~i~~~~ 138 (291)
.++.+||-.|+| .|..+..+++.. +++|++++.+++.. .+.++..|.+. ++. .+...... ...+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~---~~~a~~lGa~~--~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKE---REAIDRLGADS--FLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHh---HHHHHhCCCcE--EEcCcCHHHHHHhhCCCcEEEECC
Confidence 478899999886 456667777766 78899998876531 12223344421 111 11111100 13478777532
Q ss_pred cccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 139 MFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 139 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.....+....+.|++||.++...
T Consensus 251 ------G~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 ------SAEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred ------CcHHHHHHHHHhhcCCCEEEEEc
Confidence 11335677788999999987643
No 411
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.05 E-value=4.4 Score=35.52 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=56.1
Q ss_pred CEEEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CCeEEEEccccCCccCCCccEEEEc
Q 022864 65 HTVLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLEL-----QNVEIIVADISTFEMEASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~D~i~~~ 137 (291)
++|+=+|+|. |. ++..|++. +..|+.++-+++.++..++ +.|+ ................+++|+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 5899999983 44 56666654 7789999988765544433 1232 0000101111111112578988774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
-=- .+....++.+...+.++..++...-+
T Consensus 78 vK~---~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 78 CKA---YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred CCH---HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 322 24567888899999999876654433
No 412
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=85.94 E-value=6.8 Score=34.51 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccCCcc-CCCccEE
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADISTFEM-EASYDRI 134 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-~~~~D~i 134 (291)
.+...++.+||=.||| .|..+..+++.. +.+++.++.+++..+.++ +.|.+. +.....+...... ...+|++
T Consensus 158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~d~v 232 (333)
T cd08296 158 NSGAKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLAR----KLGAHHYIDTSKEDVAEALQELGGAKLI 232 (333)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHH----HcCCcEEecCCCccHHHHHHhcCCCCEE
Confidence 3456778899999975 455666666665 789999999887655553 234321 1111111111000 1347888
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+.... ....+....+.|+++|.++...
T Consensus 233 i~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 233 LATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 75311 1346777888999999987644
No 413
>PRK08324 short chain dehydrogenase; Validated
Probab=85.85 E-value=7.9 Score=38.09 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
++++||=.|++ |.++..+++.+ .+.+|+++|.++...+.+.+..... .++.++.+|+.+... .+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46788888764 33333333321 2789999999988765554433322 367888888876421 13
Q ss_pred CccEEEEcccccccc-------------------cHHHHHHHHHhcccc---CeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMK-------------------NYQNLLKKISKWMKE---DTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~-------------------~~~~~l~~~~~~Lkp---gG~l~~~~ 167 (291)
..|+|+.+....... ....+++.+.+.+++ +|.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 689998876432210 023455666666665 57666644
No 414
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.76 E-value=3.4 Score=36.67 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~ 129 (291)
......++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .|.+. +.....++.+ .....
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCC
Confidence 44556778899988865 455666667665 67 89999988887665543 34321 1111111111 11113
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+-.... ...++.+.+.|+++|.++...
T Consensus 241 ~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 241 GVDVSFDCAGV------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCEEEECCCC------HHHHHHHHHhccCCCEEEEEc
Confidence 48988864221 235677888999999977643
No 415
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.53 E-value=7.8 Score=33.65 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=61.7
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH-------hCC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV-------LEL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~----------~~v~~~~~d~~~~ 125 (291)
.+|-=||+|+=+ ++..++.. |.+|+.+|.+++.++.+.+++.+ .|. .++++ ..|+...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHHh
Confidence 478889998533 44444443 89999999999998887665432 111 12222 2333221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhcc-ccCeeEEEEeec
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWM-KEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 169 (291)
...|+|+-. +.+..+-...++..+.+.+ +|+.++...+..
T Consensus 83 ---~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ---ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ---CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 567888765 4555555667888888888 777776554444
No 416
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.44 E-value=14 Score=30.73 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
.++++|=.| |+|.++..+++.+ .+.+|++++.++...+.........+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788777 4455555555432 37899999988765554444443322 256778889887531 0 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999986653
No 417
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.44 E-value=16 Score=32.58 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc-cCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-MEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~ 139 (291)
.++.+||-.|+| .|..+..+++.. ++++++++.+++....+. +..|.+.+ +...+...+. ....+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~---~~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEAL---EHLGADDY-LVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH---HhcCCcEE-ecCCChHHHHHhcCCCcEEEECCC
Confidence 578899888775 466667777665 788888888776443332 22343211 1111111110 0134777764311
Q ss_pred ccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 140 FEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 140 l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....+..+.+.|+++|+++...
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEEC
Confidence 1245677788999999987643
No 418
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.43 E-value=8.9 Score=33.99 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~----~~~~~~ 129 (291)
.....+++.+||=.|+| .|..+..+++.. +. .++++|.+++..+.+++ .|.+.+ .....+.. ......
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCC
Confidence 34456788899999876 456667777665 66 69999998876655543 343211 11111111 111114
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+.... ....+..+.+.|+++|+++..
T Consensus 235 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 6898875321 134677888899999988754
No 419
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=85.03 E-value=12 Score=33.80 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEc---cc----cCCccCC
Q 022864 60 RLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVA---DI----STFEMEA 129 (291)
Q Consensus 60 ~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~---d~----~~~~~~~ 129 (291)
...++.+||=.|+| .|..+..+++.. ++ +|++++.+++..+.++ ..|.+.+ ..... +. .......
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHHHHhcCCC
Confidence 56678899888875 344556666665 66 7999998887443333 3444221 11110 11 1111124
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+|+... ......+..+.+.|+++|+++...
T Consensus 275 gvDvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAA-----GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECC-----CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 689887541 222456777788899999987643
No 420
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.93 E-value=6.9 Score=33.75 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=50.6
Q ss_pred EEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccccc
Q 022864 66 TVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
+|.=||+|. |.++..|.+. +.+|+++|.+++..+.+.+ .+. +.....+.. .....|+|+..-+...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~----~g~--~~~~~~~~~---~~~~aDlVilavp~~~- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIE----RGL--VDEASTDLS---LLKDCDLVILALPIGL- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----CCC--cccccCCHh---HhcCCCEEEEcCCHHH-
Confidence 567788874 4455666554 7799999999987655543 232 111111211 1156799988765433
Q ss_pred ccHHHHHHHHHhccccCeeE
Q 022864 144 KNYQNLLKKISKWMKEDTLL 163 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~l 163 (291)
..++++.+...++|+.++
T Consensus 70 --~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 --LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --HHHHHHHHHHhCCCCcEE
Confidence 345677787778776443
No 421
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.77 E-value=22 Score=32.20 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=63.5
Q ss_pred HHHHcCCCCCCEEEEEcCCcchH----HHHHHHHC---CCCEEEEEcC----CHHHHHHHHHHH----HHhCCCCeEEEE
Q 022864 55 YCERSRLEDGHTVLDVGCGWGSL----SLYIAQKY---SNCKITGICN----SKTQKEFIEEQC----RVLELQNVEIIV 119 (291)
Q Consensus 55 ~~~~~~~~~~~~vLDiGcG~G~~----~~~la~~~---~~~~v~~vD~----s~~~~~~a~~~~----~~~~~~~v~~~~ 119 (291)
+++.+...+..+|+|+|.|.|.- ...|+.+- |..++|+|+. +...++.+.++. +..|+ ..+|..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fef~~ 180 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFEFHP 180 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEEEEe
Confidence 44444455678999999999963 34444432 3469999999 777777666654 33455 355544
Q ss_pred c---cccCCccC----CCccEE--EEcccccccc-------c-HHHHHHHHHhccccCeeEEEEe
Q 022864 120 A---DISTFEME----ASYDRI--YSIEMFEHMK-------N-YQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 120 ~---d~~~~~~~----~~~D~i--~~~~~l~~~~-------~-~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
. +++++... .+=+.+ -|...++++. + ...+|+.+ +.|+|.-++++..
T Consensus 181 v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv~~E~ 244 (374)
T PF03514_consen 181 VVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVVLVEQ 244 (374)
T ss_pred cccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEEEEee
Confidence 2 33333211 222233 3444567763 1 23355554 4689997666543
No 422
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.70 E-value=3 Score=36.56 Aligned_cols=100 Identities=23% Similarity=0.212 Sum_probs=58.8
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEE-EccccCCccCCCccEEE
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQN-VEII-VADISTFEMEASYDRIY 135 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~-~~d~~~~~~~~~~D~i~ 135 (291)
.+..||++|-=+|.| -|.++..+++.. +.+|+++|-+..--+ +.++..|.+. +.+. ..|+-.-. ....|.++
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kke---ea~~~LGAd~fv~~~~d~d~~~~~-~~~~dg~~ 251 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKE---EAIKSLGADVFVDSTEDPDIMKAI-MKTTDGGI 251 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHH---HHHHhcCcceeEEecCCHHHHHHH-HHhhcCcc
Confidence 355688888777754 799999999887 899999999875433 3334445431 1111 11111100 03334333
Q ss_pred Ecc-cccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 136 SIE-MFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 136 ~~~-~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-.- .+ ....++.+...||++|.+++...
T Consensus 252 ~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 252 DTVSNL-----AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred eeeeec-----cccchHHHHHHhhcCCEEEEEeC
Confidence 211 11 13346667889999999887554
No 423
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=84.64 E-value=5.5 Score=31.10 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=55.5
Q ss_pred EEEEEcCCcchHHH--HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhC-C------CCeEEEEccccCCccCCCccEEEE
Q 022864 66 TVLDVGCGWGSLSL--YIAQKYSNCKITGICNSKTQKEFIEEQCRVLE-L------QNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 66 ~vLDiGcG~G~~~~--~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~------~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
+|.=||+|.++.+. .++.+ +.+|+....+++.++..++.-.... + +++.+ ..|+.+.. ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEe
Confidence 46678888766433 33333 7899999999988777665432111 1 12332 23333211 56798887
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.-+-. ..+.+++++...++++-.+++.
T Consensus 76 avPs~---~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 76 AVPSQ---AHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -S-GG---GHHHHHHHHTTTSHTT-EEEET
T ss_pred cccHH---HHHHHHHHHhhccCCCCEEEEe
Confidence 55443 4578899999999887777663
No 424
>PRK06940 short chain dehydrogenase; Provisional
Probab=84.63 E-value=17 Score=31.04 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred EEEEEcCCcchHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C-CCccEE
Q 022864 66 TVLDVGCGWGSLSLYIAQKY-SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-ASYDRI 134 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-~~~D~i 134 (291)
.+|=-|+ |.++..+++.+ .+.+|+.++.++..++...+..+..+. ++.++.+|+.+... . +..|++
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 4555554 45666666543 378999999987766555544444333 67788889877421 1 468998
Q ss_pred EEccccccc-ccH-----------HHHHHHHHhccccCeeEEE
Q 022864 135 YSIEMFEHM-KNY-----------QNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 135 ~~~~~l~~~-~~~-----------~~~l~~~~~~LkpgG~l~~ 165 (291)
+.+...... .+. -.+++.+.+.++++|.+++
T Consensus 81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 887654321 111 2245555566666665433
No 425
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=84.53 E-value=1.4 Score=36.43 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Q 022864 50 AMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQ 106 (291)
Q Consensus 50 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 106 (291)
.+++++++.+...++...+|.--|.|+.+..+.++.+...+++.|-+|-..+.+...
T Consensus 30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 367788888888899999999999999999999999889999999999876666543
No 426
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.51 E-value=16 Score=30.94 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|-.|++. +.++..+++.+ .+++|+.++.+....+..++......-.++.++.+|+.+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 467899999763 55555555432 378898886543222222222222211367788899887421 1
Q ss_pred CCccEEEEccc
Q 022864 129 ASYDRIYSIEM 139 (291)
Q Consensus 129 ~~~D~i~~~~~ 139 (291)
++.|+++.+..
T Consensus 86 g~ld~lv~nag 96 (257)
T PRK08594 86 GVIHGVAHCIA 96 (257)
T ss_pred CCccEEEECcc
Confidence 56898887653
No 427
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.37 E-value=14 Score=31.24 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+.++|=.|++. .++..+++.+ .+.+|+.++.+++..+...+ ..+ .++.++.+|+.+... -+
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 356888888644 4444443321 27899999988765433322 222 267888999987531 04
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6798887654
No 428
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=83.70 E-value=14 Score=32.55 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEcCC-cchHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccc----cCCccCCCc
Q 022864 59 SRLEDGHTVLDVGCG-WGSLSLYIAQKYSN-CKITGICNSKTQKEFIEEQCRVLELQN-VEIIVADI----STFEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG-~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~----~~~~~~~~~ 131 (291)
....++.+||=.|+| .|..+..+++.. + .+|++++.++...+.++ ..|.+. +.....+. ........+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLY-SPSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDAIEQVLELTDGRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HhCCCceeccccccHHHHHHHHhCCCCC
Confidence 345678888877775 344555566665 6 78999998887655444 234321 12211121 111112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+... .. ...+..+.+.|+++|.++..
T Consensus 237 d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 237 DVVIEAV-----GI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CEEEECC-----CC-HHHHHHHHHhccCCcEEEEe
Confidence 9887542 11 33577788999999998754
No 429
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=83.61 E-value=5.4 Score=28.96 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=48.2
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC---CCccEEEEcccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME---ASYDRIYSIEMFEH 142 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~D~i~~~~~l~~ 142 (291)
+|| +-||.|..+..++++ .++.+++.|+ .+.+...+..+.... ..+|+|++.
T Consensus 3 kIL-lvCg~G~STSlla~k------------------~k~~~~e~gi-~~~i~a~~~~e~~~~~~~~~~DvIll~----- 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK------------------TTEYLKEQGK-DIEVDAITATEGEKAIAAAEYDLYLVS----- 57 (104)
T ss_pred EEE-EECCCchHHHHHHHH------------------HHHHHHHCCC-ceEEEEecHHHHHHhhccCCCCEEEEC-----
Confidence 455 669999877777655 4566667777 577777777665422 468999987
Q ss_pred cccHHHHHHHHHhccccCeeEE
Q 022864 143 MKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 143 ~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
++..-.++.+...+.+.|.-+
T Consensus 58 -PQi~~~~~~i~~~~~~~~ipv 78 (104)
T PRK09590 58 -PQTKMYFKQFEEAGAKVGKPV 78 (104)
T ss_pred -hHHHHHHHHHHHHhhhcCCCE
Confidence 344455666777776655533
No 430
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.58 E-value=13 Score=31.22 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=46.1
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-CCc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-ASY 131 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~~~ 131 (291)
.+||-.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+. ++.++.+|+.+... . +..
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46776664 455555554332 378999999988766555544444332 68888899877431 0 367
Q ss_pred cEEEEccc
Q 022864 132 DRIYSIEM 139 (291)
Q Consensus 132 D~i~~~~~ 139 (291)
|.|+.+..
T Consensus 80 d~vi~~ag 87 (263)
T PRK06181 80 DILVNNAG 87 (263)
T ss_pred CEEEECCC
Confidence 99987754
No 431
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.47 E-value=8.2 Score=32.14 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
++.++|-.|++ |.++..+++.+ .+.+|+.++.++...+.+.+.....+. ++.++.+|+.+... . +
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 36788988863 44444443321 278999999988766655555544443 67888888876321 0 3
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|.|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 5799987653
No 432
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=83.46 E-value=5.9 Score=34.32 Aligned_cols=59 Identities=19% Similarity=0.102 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh
Q 022864 49 KAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL 110 (291)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 110 (291)
...+..++.. ...++..|||.-+|+|..+....+. +-.+.|+|+++..++.+.++....
T Consensus 209 ~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 209 LALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 3445555554 5678999999999999998887765 779999999999999999887654
No 433
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.45 E-value=4.6 Score=36.04 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEEE---EcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKITG---ICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 126 (291)
++..++++|||-|.++.+++...+...++. +|-...-+..=......+.+ .+.-+..|++++.
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~-vi~R~riDI~dLk 247 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSL-VIKRIRIDIEDLK 247 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcc-hhheeEeeHHhcC
Confidence 346899999999999999998876666666 77655443332222222212 3445566776653
No 434
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.25 E-value=2.3 Score=36.07 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH
Q 022864 51 MLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV 109 (291)
Q Consensus 51 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~ 109 (291)
++..+++.++..+..+++|+-||+|..+..+... +.+|+.-|+++..+...+..++.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHHHHHhc
Confidence 4556666665436789999999999999988763 78999999999988877755443
No 435
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.23 E-value=7.4 Score=33.73 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=57.1
Q ss_pred EEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh---CC--------------CCeEEEEccccCCc
Q 022864 66 TVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL---EL--------------QNVEIIVADISTFE 126 (291)
Q Consensus 66 ~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~--------------~~v~~~~~d~~~~~ 126 (291)
+|.=||+|.= .++..+++. +.+|+.+|.+++.++.+.+..... +. .++.+ ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh-
Confidence 6788888842 344444544 789999999999988876543211 10 01222 1222221
Q ss_pred cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 127 MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 127 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
-...|+|+..-+ +...-...++..+.+.++|+.++.+.+.
T Consensus 79 -~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 -VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred -hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 156798886532 2222235677888888888876655443
No 436
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.08 E-value=11 Score=31.49 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=48.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc------------c
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE------------M 127 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------------~ 127 (291)
.++++||=.|+ +|.++..+++.+ .+.+|++++.++...+...+.....+..++.++.+|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 35778998885 455544444332 27899999998876665555554444345677777775321 1
Q ss_pred C-CCccEEEEccc
Q 022864 128 E-ASYDRIYSIEM 139 (291)
Q Consensus 128 ~-~~~D~i~~~~~ 139 (291)
. ++.|.|+.+..
T Consensus 89 ~~~~id~vi~~Ag 101 (247)
T PRK08945 89 QFGRLDGVLHNAG 101 (247)
T ss_pred HhCCCCEEEECCc
Confidence 1 46899887653
No 437
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=83.04 E-value=18 Score=31.58 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCC-CCeEEEEccccCCccC----CCccEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLEL-QNVEIIVADISTFEME----ASYDRIY 135 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~----~~~D~i~ 135 (291)
.+++||-.| |+|..+..+++.+ .+.+|+++..++.............+. +++.++.+|+.+...- ...|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 367888887 4566666666542 377887776555433222221111122 3688899999875311 4679888
Q ss_pred Eccc
Q 022864 136 SIEM 139 (291)
Q Consensus 136 ~~~~ 139 (291)
.+..
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7664
No 438
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.87 E-value=9.4 Score=33.41 Aligned_cols=90 Identities=16% Similarity=0.065 Sum_probs=51.1
Q ss_pred CCEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 64 GHTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 64 ~~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
..+|.=||+|.- .++..+.+.....+|+++|.+++..+.++ ..+. ... ...+..+. ....|+|+..-...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~-~~~-~~~~~~~~--~~~aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGL-GDR-VTTSAAEA--VKGADLVILCVPVG 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCC-Cce-ecCCHHHH--hcCCCEEEECCCHH
Confidence 358889998852 34444443321248999999998655443 3333 111 11222111 15679998876543
Q ss_pred ccccHHHHHHHHHhccccCeeEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
. ...+++.+...+++|+.++
T Consensus 78 ~---~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 A---SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred H---HHHHHHHHHhhCCCCCEEE
Confidence 2 3456667777788877543
No 439
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.78 E-value=5.1 Score=38.76 Aligned_cols=92 Identities=11% Similarity=0.091 Sum_probs=56.0
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~~ 137 (291)
.+|+=+|+| .++..+++.. .+.+++.+|.+++.++.+++ . ....+.+|..+.. .. ++.|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y---GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C---CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 456666655 4444444321 27799999999998776653 2 3568899998853 11 678887774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
..- - +....+-...+.+.|...++...-
T Consensus 472 ~~d--~-~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 472 CNE--P-EDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred eCC--H-HHHHHHHHHHHHHCCCCeEEEEeC
Confidence 222 1 112233334455778888776544
No 440
>PRK09072 short chain dehydrogenase; Provisional
Probab=82.72 E-value=19 Score=30.33 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------CC
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~~ 129 (291)
++.++|=.|++.|. ++..++++ |.+|++++.+++..+...... ..+ .++.++.+|+.+... .+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35678888866432 34444444 789999999887665554433 122 368888899887531 13
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
..|.++.+...
T Consensus 80 ~id~lv~~ag~ 90 (263)
T PRK09072 80 GINVLINNAGV 90 (263)
T ss_pred CCCEEEECCCC
Confidence 57999887544
No 441
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=82.67 E-value=14 Score=32.54 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=56.9
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccCCCccEEE
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEMEASYDRIY 135 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~~~~D~i~ 135 (291)
.+...++.+||=.||| .|..+..+++.. +.++++++.+++..+.+++ .+.+.+ .....+... .....+|+|+
T Consensus 164 ~~~~~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~-~~~~~~d~v~ 237 (337)
T cd05283 164 RNGVGPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALK----LGADEFIATKDPEAMK-KAAGSLDLII 237 (337)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCcEEecCcchhhhh-hccCCceEEE
Confidence 3456677888888874 455556666665 7899999998886655532 333211 000111100 1125688887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
....- ...+..+.+.|+++|.++...
T Consensus 238 ~~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 238 DTVSA------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred ECCCC------cchHHHHHHHhcCCCEEEEEe
Confidence 53221 123566778889999887643
No 442
>PRK06128 oxidoreductase; Provisional
Probab=82.64 E-value=26 Score=30.34 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHH--HHHHHHHHHHHhCCCCeEEEEccccCCcc----------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKT--QKEFIEEQCRVLELQNVEIIVADISTFEM----------E 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~--~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 128 (291)
.++++|=.|++ |.++..+++.+ .+.+|+.+..+.+ ..+...+.....+. ++.++.+|+.+... .
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGR-KAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHHHHHH
Confidence 45788888864 44444444332 2778887765432 22223333333333 57788899887421 0
Q ss_pred -CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEE
Q 022864 129 -ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 129 -~~~D~i~~~~~l~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+..|+++.+..... + ++ .-.+++.+.+.++++|.+++.
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 46899998765321 1 11 123556666777788876654
No 443
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.63 E-value=21 Score=32.53 Aligned_cols=100 Identities=8% Similarity=0.142 Sum_probs=51.7
Q ss_pred EEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHH---hCC------CCeEEEE-ccccCCccCCCccEE
Q 022864 66 TVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRV---LEL------QNVEIIV-ADISTFEMEASYDRI 134 (291)
Q Consensus 66 ~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~------~~v~~~~-~d~~~~~~~~~~D~i 134 (291)
+|-=+|.| .|.....+... +.+|+++|.+++.++.+++.... .++ .+..+.. .|..+. ....|+|
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--~~~ad~v 77 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--YRDADYV 77 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh--hcCCCEE
Confidence 56667888 34332233323 68999999999988777652100 000 0112211 111111 1456888
Q ss_pred EEccccc--------ccccHHHHHHHHHhccccCeeEEEEeecc
Q 022864 135 YSIEMFE--------HMKNYQNLLKKISKWMKEDTLLFVHHFCH 170 (291)
Q Consensus 135 ~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 170 (291)
+..-+-. .+.....+++.+.+ ++||..+++.+..+
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 7654321 11234556677777 67777666554443
No 444
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.48 E-value=4.2 Score=36.45 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=58.8
Q ss_pred HcCCCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---cc----CCccC
Q 022864 58 RSRLEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---IS----TFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---~~----~~~~~ 128 (291)
.....++.+||-.|+|. |..+..+++.. +. .++++|.++...+.+++ .+.+ .++..+ .. ... .
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~-G~~~v~~~~~~~~k~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIA-GCTTIIAVDIVDSRLELAKE----LGAT--HVINPKEEDLVAAIREIT-G 252 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----cCCc--EEecCCCcCHHHHHHHHh-C
Confidence 34556788999988763 66677777766 66 69999998886655433 3331 111111 10 111 2
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+|+-.-.- ...+..+.+.|+++|.++...
T Consensus 253 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 458888754211 235677888899999987643
No 445
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.42 E-value=23 Score=29.88 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCcc-hHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------cC-
Q 022864 63 DGHTVLDVGCGWG-SLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------ME- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G-~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~~- 128 (291)
.++++|-.|+++| +++..+++.+ .+++|+.++.+....+.+.+...+. +.+.++.+|+.+.. ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHHc
Confidence 4678999998762 5555444432 2789988888765433333333222 23456778887642 11
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+..+
T Consensus 87 g~ld~lv~nAg~ 98 (258)
T PRK07533 87 GRLDFLLHSIAF 98 (258)
T ss_pred CCCCEEEEcCcc
Confidence 568999887643
No 446
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=82.30 E-value=5.3 Score=35.76 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=59.3
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc---cc----cCCccC
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQNVEIIVA---DI----STFEME 128 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~----~~~~~~ 128 (291)
.....++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.++ ..|.. .++.. +. ......
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~----~~g~~--~vv~~~~~~~~~~l~~~~~~ 249 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELAR----RFGAT--HTVNASEDDAVEAVRDLTDG 249 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHH----HhCCe--EEeCCCCccHHHHHHHHcCC
Confidence 3455678899988875 466777777765 665 999998888665543 23331 11111 11 111112
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..+|+++....- ...+..+.+.|+++|+++...
T Consensus 250 ~~vd~vld~~~~------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVGR------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCCC------hHHHHHHHHHhhcCCeEEEEe
Confidence 458988753211 245677888899999987643
No 447
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.28 E-value=2.5 Score=39.07 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHCCCCEEE------EEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKYSNCKIT------GICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYS 136 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~------~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 136 (291)
.+++|+=||||+=+.+..+--+-.|.+|+ ++|.+.... +++...|. ...+..+.. ...|+|++
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~----~kA~~dGF-----~v~~~~Ea~--~~ADvVvi 103 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASW----RKATENGF-----KVGTYEELI--PQADLVIN 103 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchH----HHHHhcCC-----ccCCHHHHH--HhCCEEEE
Confidence 57899999999644433221111245555 445445533 33333444 123333321 57899999
Q ss_pred cccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 137 IEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 137 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..+.. ....+.+.+...||||..|.++
T Consensus 104 LlPDt---~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 104 LTPDK---QHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred cCChH---HHHHHHHHHHhhCCCCCEEEec
Confidence 87765 2556679999999999999884
No 448
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.17 E-value=12 Score=32.35 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=56.1
Q ss_pred CEEEEEcCCcc--hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh----------CC----------CCeEEEEccc
Q 022864 65 HTVLDVGCGWG--SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL----------EL----------QNVEIIVADI 122 (291)
Q Consensus 65 ~~vLDiGcG~G--~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~----------~~v~~~~~d~ 122 (291)
.+|.=||+|.= .++..++.. +.+|+.+|.+++.++.+++..... +. .++.+. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 47888999843 244445544 789999999999988765543321 11 011221 222
Q ss_pred cCCccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEE
Q 022864 123 STFEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLF 164 (291)
Q Consensus 123 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 164 (291)
.. -...|+|+..- .+.......+++++.+.++|+..++
T Consensus 81 ~~---~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ES---LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HH---hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 11 14578888752 2233335678888888888887654
No 449
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.37 E-value=1.7 Score=34.79 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccccc
Q 022864 63 DGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMFE 141 (291)
Q Consensus 63 ~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l~ 141 (291)
.+.+|.=+|+| .|......++.+ +.+|+++|.+..... ..... .+ ...++.++. ...|+|+..-++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~----~~~~~---~~--~~~~l~ell--~~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEE----GADEF---GV--EYVSLDELL--AQADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHH----HHHHT---TE--EESSHHHHH--HH-SEEEE-SSSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhh----hcccc---cc--eeeehhhhc--chhhhhhhhhccc
Confidence 58899999997 355444444456 899999999988543 12121 12 333444432 4579998876652
Q ss_pred ccccHHHHHHHHHhccccCeeEEE
Q 022864 142 HMKNYQNLLKKISKWMKEDTLLFV 165 (291)
Q Consensus 142 ~~~~~~~~l~~~~~~LkpgG~l~~ 165 (291)
.- ...-+=++....+|+|.+|+-
T Consensus 103 ~~-T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 103 PE-TRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp TT-TTTSBSHHHHHTSTTTEEEEE
T ss_pred cc-cceeeeeeeeeccccceEEEe
Confidence 11 111122335677888886643
No 450
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=81.37 E-value=4 Score=38.03 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEcccc
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEMF 140 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~l 140 (291)
-.+++|+=+|+|. |......+..+ +++|+++|.++.....+. ..|. .+ .++.+.. ...|+|++...
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~----~~G~---~~--~~leell--~~ADIVI~atG- 318 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF-GARVVVTEIDPICALQAA----MEGY---QV--VTLEDVV--ETADIFVTATG- 318 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHH----hcCc---ee--ccHHHHH--hcCCEEEECCC-
Confidence 3689999999995 33333333334 789999988876432221 1232 22 2333321 56899987532
Q ss_pred cccccHHHHH-HHHHhccccCeeEEEEee
Q 022864 141 EHMKNYQNLL-KKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 141 ~~~~~~~~~l-~~~~~~LkpgG~l~~~~~ 168 (291)
...++ ......+|||++++-...
T Consensus 319 -----t~~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 319 -----NKDIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred -----cccccCHHHHhccCCCcEEEEcCC
Confidence 22344 367788999999876543
No 451
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.07 E-value=17 Score=31.27 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=58.1
Q ss_pred CEEEEEcCCc--chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-------HHhCC----------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGW--GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQC-------RVLEL----------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~--G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~----------~~v~~~~~d~~~~ 125 (291)
.+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++.+ .+.+. .++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3678889984 3455555544 779999999999887655322 22221 12222 233222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
-...|+|+..- -+.+.-...+++++.+.++|+..+...+
T Consensus 80 --~~~aDlVi~av-~e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAA-TENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeecc-cccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 15678888752 2222334578999999999988774433
No 452
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.01 E-value=28 Score=32.04 Aligned_cols=94 Identities=12% Similarity=0.118 Sum_probs=55.0
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHH---------------HHHhCCCCeEEEEccccCCcc
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQ---------------CRVLELQNVEIIVADISTFEM 127 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~v~~~~~d~~~~~~ 127 (291)
++|.=||.|.-+ ++..|++. |.+|+++|.+++.++..+.. ....| ++.+. .+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g--~l~~~-~~------ 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG--YLRAT-TT------ 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC--ceeee-cc------
Confidence 578888988544 44445554 78999999999977653210 00011 11111 01
Q ss_pred CCCccEEEEccccc-------ccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 128 EASYDRIYSIEMFE-------HMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 128 ~~~~D~i~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+..|+|+..-.-. .+......++.+.+.|++|..+++.+..
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 13578887654432 2234456678888889888776665443
No 453
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.00 E-value=12 Score=31.38 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc------C-CCccE
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM------E-ASYDR 133 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~ 133 (291)
.++++|=.|++.| ++..+++.+ .+++|++++.+++..+.+.+........++.++.+|+.+... . ++.|+
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3578888887543 444443321 278999999988776655554443322367888888876421 1 56899
Q ss_pred EEEccc
Q 022864 134 IYSIEM 139 (291)
Q Consensus 134 i~~~~~ 139 (291)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 887653
No 454
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=80.79 E-value=15 Score=36.44 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=66.4
Q ss_pred CCEEEEEcCCcchHHH--HHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccC
Q 022864 64 GHTVLDVGCGWGSLSL--YIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADIST 124 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~--~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~ 124 (291)
-.+|--||+|+=+.++ .++.. |.+|+.+|.+++.++.+++++... + +.+++.. .|+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 3478899999654443 44433 899999999999988877655321 1 1123332 22221
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+ ...|+|+=. +.+.++-..+++.++-+.++|+.+|.-.+.+
T Consensus 390 ~---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 390 F---DNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred h---cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 567887754 6666767789999999999999887665444
No 455
>PRK08703 short chain dehydrogenase; Provisional
Probab=80.79 E-value=14 Score=30.53 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc--------------
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE-------------- 126 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-------------- 126 (291)
+++++|=.||+ |.++..+++.+ .+.+|++++.++...+...+.+...+...+.++..|+.+..
T Consensus 5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence 35689999864 44444444332 37899999998876665555444333224556667765321
Q ss_pred cCCCccEEEEccc
Q 022864 127 MEASYDRIYSIEM 139 (291)
Q Consensus 127 ~~~~~D~i~~~~~ 139 (291)
.....|.|+.+..
T Consensus 84 ~~~~id~vi~~ag 96 (239)
T PRK08703 84 TQGKLDGIVHCAG 96 (239)
T ss_pred hCCCCCEEEEecc
Confidence 0035688886654
No 456
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.70 E-value=6.8 Score=34.60 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc---cCCccCCCccEE
Q 022864 61 LEDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI---STFEMEASYDRI 134 (291)
Q Consensus 61 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~---~~~~~~~~~D~i 134 (291)
..++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.++ ..|.+.+ .....+. .+....+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAK----KMGADVVINPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCcceeeCcccccHHHHHHHcCCCCCCEE
Confidence 35678888887753 66777777766 66 7888877776554433 2333111 1111111 111222568988
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+..-. ....+..+.+.|+++|.++...
T Consensus 236 ld~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 236 LEMSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 86421 1335667788899999987543
No 457
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=80.63 E-value=6.9 Score=34.72 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=64.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEc----cccCCc-
Q 022864 53 ELYCERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVA----DISTFE- 126 (291)
Q Consensus 53 ~~~~~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~----d~~~~~- 126 (291)
-..+.....+++.+|.-+||| .|..++.-++.....+++++|++++-++.|++ .|. .+++.. |+-+..
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGA--T~~vn~~~~~~vv~~i~ 248 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGA--THFVNPKEVDDVVEAIV 248 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCC--ceeecchhhhhHHHHHH
Confidence 344555677899999999998 46666666666545689999999997777665 343 223322 121111
Q ss_pred --cCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 127 --MEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 127 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
.+...|.++ +...+. ..++....++.++|..++.-..
T Consensus 249 ~~T~gG~d~~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 249 ELTDGGADYAF-----ECVGNV-EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred HhcCCCCCEEE-----EccCCH-HHHHHHHHHHhcCCeEEEEecC
Confidence 113456553 233233 3667777777779987775443
No 458
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.47 E-value=13 Score=30.85 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----C------C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----E------A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~------~ 129 (291)
..+++|-.|+ +|.++..+++.+ .+.+|++++.++...+...+..+..+ .++.++.+|+.+... . +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3457888875 555555555432 37799999998876655544444333 268888999987531 0 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876643
No 459
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.33 E-value=17 Score=35.99 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CCEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccC
Q 022864 64 GHTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADIST 124 (291)
Q Consensus 64 ~~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~ 124 (291)
-.+|.=||+|+=+ ++..++... |..|+.+|.+++.++.+.+++.+. + +.++++. .|+..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 3689999999743 344444232 899999999999988876654321 1 1233333 22221
Q ss_pred CccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 125 FEMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 125 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
+ ...|+|+=. +.+.++-..++++++-+.++|+.+|.-.+.+
T Consensus 387 ~---~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 387 F---KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred h---ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 567877754 5666666788999999999999888765444
No 460
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.14 E-value=17 Score=36.00 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=65.6
Q ss_pred CEEEEEcCCcchH--HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C----------CCCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E----------LQNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~~--~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~----------~~~v~~~~~d~~~~ 125 (291)
.+|.=||+|+=+. +..++.. |.+|+.+|.+++.++.+.+++... | +.++++. .|+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 5799999998443 3444433 899999999999988776654321 1 1233332 233222
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
...|+|+=. +.+.++-..+++.++.+.++|+.+|...+.+
T Consensus 391 ---~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 391 ---ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred ---cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 567877753 5666666788999999999999887665444
No 461
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.12 E-value=31 Score=29.29 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCCEEEEEcCCcc-hH----HHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----------c
Q 022864 63 DGHTVLDVGCGWG-SL----SLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----------M 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G-~~----~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----------~ 127 (291)
.++++|=.|++.| +. +..+++. +++|+.++.+....+.+.+..... +.+.++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQL--GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhcc--CCceEeecCCCCHHHHHHHHHHHHh
Confidence 4678888998752 44 4444443 788988887643222233222221 24567788887742 1
Q ss_pred C-CCccEEEEcccc
Q 022864 128 E-ASYDRIYSIEMF 140 (291)
Q Consensus 128 ~-~~~D~i~~~~~l 140 (291)
. ++.|+++.+..+
T Consensus 81 ~~g~iD~linnAg~ 94 (262)
T PRK07984 81 VWPKFDGFVHSIGF 94 (262)
T ss_pred hcCCCCEEEECCcc
Confidence 1 568999987743
No 462
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.94 E-value=14 Score=32.05 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=52.5
Q ss_pred CEEEEEcCCcch--HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-------ccCCccCCCccEEE
Q 022864 65 HTVLDVGCGWGS--LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------ISTFEMEASYDRIY 135 (291)
Q Consensus 65 ~~vLDiGcG~G~--~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------~~~~~~~~~~D~i~ 135 (291)
++|+=+|+|.-+ ++..|++. +.+|+.++.+++.++..++ .++ ++. .++ ..+......+|+|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~-~~~--~~~~~~~~~~~~~~~~~~~~d~vi 71 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGL-RLE--DGEITVPVLAADDPAELGPQDLVI 71 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCC-ccc--CCceeecccCCCChhHcCCCCEEE
Confidence 368889988432 44444443 6799999987776544432 233 110 111 11111115789888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
..-.-. +...+++.+...+.++..+++.
T Consensus 72 la~k~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 72 LAVKAY---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred Eecccc---cHHHHHHHHhhhcCCCCEEEEe
Confidence 764432 4577888888888887666553
No 463
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=79.80 E-value=12 Score=31.41 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
.+++||=.|+ +|.++..+++++ .+.+|++++.++...+...+..+..+. ++.++.+|+.+... . +
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678998885 555555555432 378999999988776665555554443 57888889887421 0 4
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|.++.+...
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 57988887644
No 464
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=79.80 E-value=4.4 Score=28.75 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=27.4
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
+|| +-||+|.-+..++... .++.+++.|+ .+++...++.+.... ..+|+|++..
T Consensus 4 kIL-vvCgsG~~TS~m~~~k-----------------i~~~l~~~gi-~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 4 KII-VACGGAVATSTMAAEE-----------------IKELCQSHNI-PVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred eEE-EECCCchhHHHHHHHH-----------------HHHHHHHCCC-eEEEEEecHHHHhhhcCCCCEEEECC
Confidence 344 4588888666653220 3344444555 355555555444321 3456665544
No 465
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=79.74 E-value=23 Score=26.99 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=50.8
Q ss_pred EEEEcCCc-ch-HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc---------ccCCc--cCCCccE
Q 022864 67 VLDVGCGW-GS-LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD---------ISTFE--MEASYDR 133 (291)
Q Consensus 67 vLDiGcG~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d---------~~~~~--~~~~~D~ 133 (291)
|+=+|+|. |. ++..|++ .+.+|+.++-++ ..+. .++.++ .+...+ ....+ ...++|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~----~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEA----IKEQGL---TITGPDGDETVQPPIVISAPSADAGPYDL 70 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHH----HHHHCE---EEEETTEEEEEEEEEEESSHGHHHSTESE
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHh----hhheeE---EEEecccceecccccccCcchhccCCCcE
Confidence 34567763 33 3333433 388999999877 4433 333333 222211 11111 1278999
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+..--- .+....++.+.+.+.|+..+++..
T Consensus 71 viv~vKa---~~~~~~l~~l~~~~~~~t~iv~~q 101 (151)
T PF02558_consen 71 VIVAVKA---YQLEQALQSLKPYLDPNTTIVSLQ 101 (151)
T ss_dssp EEE-SSG---GGHHHHHHHHCTGEETTEEEEEES
T ss_pred EEEEecc---cchHHHHHHHhhccCCCcEEEEEe
Confidence 9886322 255778999999999998776643
No 466
>PRK10083 putative oxidoreductase; Provisional
Probab=79.73 E-value=18 Score=31.77 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=55.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHH-CCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccccCCccC--CC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQK-YSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADISTFEME--AS 130 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~-~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~~~~~~--~~ 130 (291)
......++.+||=.|+| .|..+..+++. . ++ .++++|.+++..+.+++ .|.+.+ .....++.+.... ..
T Consensus 154 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~-G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 154 GRTGPTEQDVALIYGAGPVGLTIVQVLKGVY-NVKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEEKGIK 228 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhcCCCC
Confidence 34456788899999975 34455555553 3 55 58889998886655543 343211 1111111111111 22
Q ss_pred ccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 131 YDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 131 ~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
+|+|+... .. ...+....+.|+++|.++...
T Consensus 229 ~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 229 PTLIIDAA-----CH-PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEc
Confidence 45665421 11 345777788999999987643
No 467
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=79.69 E-value=3.6 Score=34.84 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=60.3
Q ss_pred EEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCCCccEEEEcccccc
Q 022864 68 LDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEASYDRIYSIEMFEH 142 (291)
Q Consensus 68 LDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~D~i~~~~~l~~ 142 (291)
|..-+|+=.++..+.+. .-+.+.+|+-++-.+..++++... .++.+...|..+ +++..+=-+|+...+++.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~~--~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRRD--RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--TT--S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhccC--CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 66777777777776654 679999999999888887776542 479999999876 233356678999999998
Q ss_pred cccHHHHHHHHHhccc--cCeeEEEEee
Q 022864 143 MKNYQNLLKKISKWMK--EDTLLFVHHF 168 (291)
Q Consensus 143 ~~~~~~~l~~~~~~Lk--pgG~l~~~~~ 168 (291)
-.++..+...+.+.+| |.|++++=-|
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 8899998888888887 6888766443
No 468
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.63 E-value=24 Score=29.06 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=47.8
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEE-cCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------C
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGI-CNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------A 129 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--~~~~v~~v-D~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----------~ 129 (291)
+.++|=.|+ +|..+..+++.+ .+.+++.+ +.+++..+...+.....+ .++.++.+|+.+...- +
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457777775 566555555432 27889888 888776655544444333 2688899999875310 2
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
++|+|+.+...
T Consensus 83 ~id~vi~~ag~ 93 (247)
T PRK05565 83 KIDILVNNAGI 93 (247)
T ss_pred CCCEEEECCCc
Confidence 68999986643
No 469
>PRK09291 short chain dehydrogenase; Provisional
Probab=79.55 E-value=12 Score=31.29 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=46.9
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----CCCccEEEEc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----EASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~D~i~~~ 137 (291)
.+||=.|++ |.++..+++.+ .+.+|++++-++...+...+.....+. ++.++.+|+.+... ....|+|+.+
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 478877774 44444444332 378999998887766555554444443 58888899877421 1378999886
Q ss_pred cc
Q 022864 138 EM 139 (291)
Q Consensus 138 ~~ 139 (291)
..
T Consensus 81 ag 82 (257)
T PRK09291 81 AG 82 (257)
T ss_pred CC
Confidence 54
No 470
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=79.29 E-value=14 Score=36.82 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=66.0
Q ss_pred CEEEEEcCCcchHH--HHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHh-------C-C---------CCeEEEEccccCC
Q 022864 65 HTVLDVGCGWGSLS--LYIAQKYSNCKITGICNSKTQKEFIEEQCRVL-------E-L---------QNVEIIVADISTF 125 (291)
Q Consensus 65 ~~vLDiGcG~G~~~--~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~-~---------~~v~~~~~d~~~~ 125 (291)
.+|-=||+|+=+.. ..++.. |..|+.+|.+++.++.+.+++.+. + + .++++. .|+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh
Confidence 57899999964433 334433 899999999999998877655431 1 0 123322 233221
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEeec
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
...|+|+=. +++.++-..++++++.+.++|+.+|...+.+
T Consensus 413 ---~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 413 ---KNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred ---ccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 567877643 5666666788999999999999988765544
No 471
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=79.17 E-value=18 Score=31.82 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=58.6
Q ss_pred HcCCCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEE-ccccC-Cc--cCCCc
Q 022864 58 RSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIV-ADIST-FE--MEASY 131 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~-~d~~~-~~--~~~~~ 131 (291)
.....++.+||=.||| .|..+..+++.. +.+|++++.+++..+.++ ..|.+.+ .... .+... +. ..+.+
T Consensus 160 ~~~~~~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 160 QARVKPGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELAR----ELGAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchhHHHHHHHHhCCCC
Confidence 3455678899988875 455666667665 889999999888766553 2343211 1111 11111 00 11268
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
|+|+..-. . ...+....+.|+++|.++..
T Consensus 235 d~vi~~~g-----~-~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 235 HVSVDALG-----I-PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CEEEEcCC-----C-HHHHHHHHHHhhcCCEEEEe
Confidence 88876411 1 34566778889999987753
No 472
>PRK07904 short chain dehydrogenase; Provisional
Probab=79.04 E-value=12 Score=31.63 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred CCCCEEEEEcCCcchHHHHHHHHC---CCCEEEEEcCCHHH-HHHHHHHHHHhCCCCeEEEEccccCCcc-----C----
Q 022864 62 EDGHTVLDVGCGWGSLSLYIAQKY---SNCKITGICNSKTQ-KEFIEEQCRVLELQNVEIIVADISTFEM-----E---- 128 (291)
Q Consensus 62 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~v~~vD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----~---- 128 (291)
..+.+||-.|++ |.++..+++.+ .+.+|+.++.+++. ++.+.+.....+..++.++.+|+.+... .
T Consensus 6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 356689988885 44444454431 24799999887664 5544444444443368899999876431 1
Q ss_pred -CCccEEEEcc
Q 022864 129 -ASYDRIYSIE 138 (291)
Q Consensus 129 -~~~D~i~~~~ 138 (291)
+..|+++.+.
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 3689887654
No 473
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=79.02 E-value=24 Score=26.97 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCCCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccCCCccEEEEccc
Q 022864 62 EDGHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEMEASYDRIYSIEM 139 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~ 139 (291)
..+.+|+-+|||. | ..+..+++.. ..+|+.+|.+++..+...+...... +.....|..+. ...+|+|++.-.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~Dvvi~~~~ 90 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG---IAIAYLDLEEL--LAEADLIINTTP 90 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc---cceeecchhhc--cccCCEEEeCcC
Confidence 4568999999963 1 2233333321 3689999998876544433322111 11222233222 257899998765
Q ss_pred ccc
Q 022864 140 FEH 142 (291)
Q Consensus 140 l~~ 142 (291)
...
T Consensus 91 ~~~ 93 (155)
T cd01065 91 VGM 93 (155)
T ss_pred CCC
Confidence 543
No 474
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=78.87 E-value=21 Score=32.39 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=60.9
Q ss_pred EEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--CeEEEEccccCCccCCCccEEEEccccccc
Q 022864 66 TVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQ--NVEIIVADISTFEMEASYDRIYSIEMFEHM 143 (291)
Q Consensus 66 ~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~~~~l~~~ 143 (291)
+||=++=..|.++..++...| . ...|. --.-...++|++.++++ .+++. +..+ ++++.+|+|+...+= ..
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~--~-~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~~~~d~vl~~~PK-~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP--Y-SIGDS-YISELATRENLRLNGIDESSVKFL--DSTA-DYPQQPGVVLIKVPK-TL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC--C-eeehH-HHHHHHHHHHHHHcCCCcccceee--cccc-cccCCCCEEEEEeCC-CH
Confidence 899999999999999995432 2 22342 22233345677777773 24443 3333 234668988875432 11
Q ss_pred ccHHHHHHHHHhccccCeeEEEEeec
Q 022864 144 KNYQNLLKKISKWMKEDTLLFVHHFC 169 (291)
Q Consensus 144 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 169 (291)
......+..+.++|+||+.+++..-.
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 34566788889999999998764443
No 475
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=78.84 E-value=14 Score=30.92 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
.++++|=.|++ |.++..+++.+ .+.+|+.++.+++.++...+..+..+. ++.++.+|+.+... . +
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46788888864 44444444332 388999999988776665555554443 58888999877421 0 4
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|.++.+..
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 5788887654
No 476
>PRK07985 oxidoreductase; Provisional
Probab=78.55 E-value=37 Score=29.35 Aligned_cols=101 Identities=8% Similarity=0.056 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCH--HHHHHHHHHHHHhCCCCeEEEEccccCCcc----------
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSK--TQKEFIEEQCRVLELQNVEIIVADISTFEM---------- 127 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------- 127 (291)
.++++|-.|++.|. ++..|++. |++|+.++.+. ...+...+.....+. ++.++.+|+.+...
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGR-KAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCC-eEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789988865432 34444443 78888876542 333333333333333 57788899887420
Q ss_pred C-CCccEEEEcccccc----c-----cc-----------HHHHHHHHHhccccCeeEEEE
Q 022864 128 E-ASYDRIYSIEMFEH----M-----KN-----------YQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 128 ~-~~~D~i~~~~~l~~----~-----~~-----------~~~~l~~~~~~LkpgG~l~~~ 166 (291)
. +..|+++.+..... + .+ .-.+++.+.+.++.+|.+++.
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 184 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITT 184 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEE
Confidence 1 46798887653211 1 11 123555666667777876653
No 477
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=78.45 E-value=25 Score=33.00 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=59.0
Q ss_pred CEEEEEcCCcchH--HHHHHHHCCCCEEEEEcCCHHHHHHHHHHH---HHhCCC---------CeEEEEccccCCccCCC
Q 022864 65 HTVLDVGCGWGSL--SLYIAQKYSNCKITGICNSKTQKEFIEEQC---RVLELQ---------NVEIIVADISTFEMEAS 130 (291)
Q Consensus 65 ~~vLDiGcG~G~~--~~~la~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~---------~v~~~~~d~~~~~~~~~ 130 (291)
++|.=+|+|..++ +..|++...+.+|+|+|.+++.++..++.. .+.++. ++.+ ..|+.+. -..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~--i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH--VAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH--Hhc
Confidence 5788899996654 344555434688999999999887754321 001110 1222 1222110 145
Q ss_pred ccEEEEcc--ccc----------ccccHHHHHHHHHhccccCeeEEEEeeccC
Q 022864 131 YDRIYSIE--MFE----------HMKNYQNLLKKISKWMKEDTLLFVHHFCHK 171 (291)
Q Consensus 131 ~D~i~~~~--~l~----------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 171 (291)
.|+|+..- +.. .+.....+.+.+.+.|++|-.+++.+..+.
T Consensus 79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~ 131 (473)
T PLN02353 79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPV 131 (473)
T ss_pred CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCC
Confidence 68776532 221 112356788889999988777776555443
No 478
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.45 E-value=27 Score=30.70 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=60.1
Q ss_pred cCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEcccc----CCccCCCc
Q 022864 59 SRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNV-EIIVADIS----TFEMEASY 131 (291)
Q Consensus 59 ~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~~----~~~~~~~~ 131 (291)
+...++.+||=.|++ .|..+..+++.. +.+|+++..+++..+.+. ..+.+.+ .....+.. .......+
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHhcCCCC
Confidence 456778899988875 677788888776 889999998887655442 2333211 11111111 11112468
Q ss_pred cEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 132 DRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 132 D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+|+....- ...+..+.+.|+++|.++...
T Consensus 236 d~vl~~~~~------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc------hHHHHHHHHHhhcCCEEEEec
Confidence 988842211 335667788899999988653
No 479
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=78.29 E-value=36 Score=29.89 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEccccC----CccCCCccE
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCK-ITGICNSKTQKEFIEEQCRVLELQN-VEIIVADIST----FEMEASYDR 133 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~----~~~~~~~D~ 133 (291)
..++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.++ ..+.+. +.....++.+ ......+|+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAK----KMGATYVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH----HhCCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence 3567788887765 455666677665 775 888888776554443 334311 1111111111 111246898
Q ss_pred EEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 134 IYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 134 i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
|+.... ....+..+.+.|+++|.++...
T Consensus 234 vld~~g------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSG------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCC------CHHHHHHHHHhhcCCCEEEEEc
Confidence 876411 1345777888999999986643
No 480
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.24 E-value=15 Score=31.08 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc---------C-C
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM---------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~-~ 129 (291)
.++++|=.|++.|. .+..|++. |++|+.++.+++..+.+.+......-.++.++.+|+.+... . +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARA--GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 36688888876543 34444444 88999999988776655554433211267888999887421 1 4
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
..|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 5888887653
No 481
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.22 E-value=15 Score=35.83 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=56.2
Q ss_pred CCEEEEEcCCc-chHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022864 64 GHTVLDVGCGW-GSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 64 ~~~vLDiGcG~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~~ 137 (291)
..+|+=+|||. |........+. +..++.+|.+++.++.+++ . ....+.+|..+.. .. +++|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~----~---g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh----c---CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 35788888873 43322222222 7789999999998776654 2 4568899998853 12 678888774
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
..- ++....+-...+.+.|+-.++...
T Consensus 472 ~~d---~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 472 IDD---PQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred eCC---HHHHHHHHHHHHHhCCCCeEEEEE
Confidence 311 112223333445567777666544
No 482
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=77.97 E-value=19 Score=31.63 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCc-chHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCe-EEEEccc----cCCccCCCccEE
Q 022864 62 EDGHTVLDVGCGW-GSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNV-EIIVADI----STFEMEASYDRI 134 (291)
Q Consensus 62 ~~~~~vLDiGcG~-G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~d~----~~~~~~~~~D~i 134 (291)
.++.+||-.|+|. |..+..+++.. +. +|++++.+++..+.++ +.|.+.+ .....+. ........+|+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v 236 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHV-GARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRDVMAELGMTEGFDVG 236 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHHHHHHhcCCCCCCEE
Confidence 4678888888763 66677777765 66 6888888777655443 3343211 1111111 011112468888
Q ss_pred EEcccccccccHHHHHHHHHhccccCeeEEEEee
Q 022864 135 YSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHHF 168 (291)
Q Consensus 135 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 168 (291)
+.... ....+..+.+.|+++|.++....
T Consensus 237 ~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 237 LEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 76321 13456778889999999877543
No 483
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.95 E-value=13 Score=30.80 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=46.0
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc--------CCCccEE
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM--------EASYDRI 134 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D~i 134 (291)
++++-.|+. |.++..+++.+ .+.+|++++.++...+...+.....+..++.++.+|+.+... ...+|++
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 467877754 55544444332 278999999988766554444433333478899999987531 1357988
Q ss_pred EEcc
Q 022864 135 YSIE 138 (291)
Q Consensus 135 ~~~~ 138 (291)
+.+.
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8754
No 484
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=77.88 E-value=18 Score=31.68 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCC-cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc----ccCCccCCCccEEE
Q 022864 61 LEDGHTVLDVGCG-WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD----ISTFEMEASYDRIY 135 (291)
Q Consensus 61 ~~~~~~vLDiGcG-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d----~~~~~~~~~~D~i~ 135 (291)
..++.+||=.|+| .|..+..+++...+.+|++++.+++..+.++ ..|.+.+--...+ +........+|+|+
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvl 240 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RLGADHVLNASDDVVEEVRELTGGRGADAVI 240 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCcEEEcCCccHHHHHHHHhCCCCCCEEE
Confidence 4567889988865 3444555565542278999988887655443 3343211111111 11111124689888
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.... . ...++.+.+.|+++|.++...
T Consensus 241 d~~g-----~-~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 241 DFVG-----S-DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EcCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 6321 1 345777788899999987643
No 485
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.87 E-value=25 Score=30.96 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=56.7
Q ss_pred HHcCCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-----CccCC
Q 022864 57 ERSRLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-----FEMEA 129 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-----~~~~~ 129 (291)
......++.+||=.|+ +.|..+..+++.. ++++++++.+. ..+.+ +..|.+ .+...+-.. .....
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~-g~~vi~~~~~~-~~~~~----~~~g~~--~~~~~~~~~~~~~~~~~~~ 242 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRR-GAIVIAVAGAA-KEEAV----RALGAD--TVILRDAPLLADAKALGGE 242 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCch-hhHHH----HhcCCe--EEEeCCCccHHHHHhhCCC
Confidence 3445678899999997 3566777777665 88888888554 33333 334432 111111000 11125
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
.+|+|+.... ...+..+.++|+++|.++..
T Consensus 243 ~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 243 PVDVVADVVG-------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCcEEEecCC-------HHHHHHHHHHhccCCEEEEe
Confidence 6898885422 13567788899999997753
No 486
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.72 E-value=17 Score=30.47 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.+++||=.|++.|. ++..++++ +.+|++++.++...+...+.....+. ++.++.+|+.+... .
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARA--GADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45688877764432 33344444 78999999988766555554443343 67889999876421 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
+..|+|+.+...
T Consensus 81 g~~d~vi~~ag~ 92 (258)
T PRK07890 81 GRVDALVNNAFR 92 (258)
T ss_pred CCccEEEECCcc
Confidence 467998887643
No 487
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=77.68 E-value=35 Score=30.48 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=58.1
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEEc--cc----cCCcc
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIVA--DI----STFEM 127 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~--d~----~~~~~ 127 (291)
......++.+||=.|+| .|..+..+++.. +. .+++++.+++..+.+++ .|.+. +..... +. .+..
T Consensus 177 ~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~- 250 (365)
T cd05279 177 NTAKVTPGSTCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT- 250 (365)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-
Confidence 34456778899988875 345556666665 55 58889988886665533 34321 111111 11 1111
Q ss_pred CCCccEEEEcccccccccHHHHHHHHHhccc-cCeeEEEEe
Q 022864 128 EASYDRIYSIEMFEHMKNYQNLLKKISKWMK-EDTLLFVHH 167 (291)
Q Consensus 128 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 167 (291)
.+.+|+|+.... . ...+....+.|+ ++|.++...
T Consensus 251 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 DGGVDYAFEVIG-----S-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCCcEEEECCC-----C-HHHHHHHHHHhccCCCEEEEEe
Confidence 245888875321 1 345677788889 999987654
No 488
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.58 E-value=15 Score=30.83 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCcch---HHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-
Q 022864 63 DGHTVLDVGCGWGS---LSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~G~---~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~- 128 (291)
.++++|=.|++.|. .+..|+++ +.+|++++.+++..+...+.....+ .++.++.+|+.+... .
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789988876542 34444443 7899999998887666655554444 267788889877421 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+...
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999876543
No 489
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.49 E-value=26 Score=30.16 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=58.8
Q ss_pred CCCCCCEEEEEcC--CcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccC-Cc-cCCCccEEE
Q 022864 60 RLEDGHTVLDVGC--GWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADIST-FE-MEASYDRIY 135 (291)
Q Consensus 60 ~~~~~~~vLDiGc--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~ 135 (291)
...++.+||=.|+ +.|..+..+++.. +++|++++.+++..+.+. ..|.+.+-....+... +. ....+|+|+
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~i~~~~~~~d~vl 213 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLK----ELGADEVVIDDGAIAEQLRAAPGGFDKVL 213 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----hcCCcEEEecCccHHHHHHHhCCCceEEE
Confidence 4567889998886 4677888888776 889999998887655543 3343222111111110 00 024688887
Q ss_pred EcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 136 SIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 136 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
... . ...+..+.++|+++|.++..
T Consensus 214 ~~~-----~--~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 214 ELV-----G--TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred ECC-----C--hHHHHHHHHHhccCCEEEEE
Confidence 532 1 23577778999999998654
No 490
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.32 E-value=11 Score=33.96 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=60.2
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCC-eEEEE--ccccC-Cc--cC
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQN-VEIIV--ADIST-FE--ME 128 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~--~d~~~-~~--~~ 128 (291)
+.....++.+||=.||| .|..+..+++.. ++ +|+++|.+++..+.+++ .|.+. +.... .++.+ .. ..
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhC
Confidence 44566789999999986 366677777766 66 79999999987666643 34421 11110 01111 00 01
Q ss_pred CCccEEEEcccccccccHHHHHHHHHhccccC-eeEEEEe
Q 022864 129 ASYDRIYSIEMFEHMKNYQNLLKKISKWMKED-TLLFVHH 167 (291)
Q Consensus 129 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 167 (291)
+.+|+|+-.-. . ...+....+.++++ |.+++..
T Consensus 254 ~g~d~vid~~G-----~-~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 254 GGVDYSFECIG-----N-VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHhhcCCCeEEEEe
Confidence 35787765321 1 34567777888886 9877644
No 491
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=77.27 E-value=9.6 Score=33.16 Aligned_cols=97 Identities=23% Similarity=0.210 Sum_probs=57.4
Q ss_pred HcCCCCCCEEEEEcCC--cchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc--cc----CCccCC
Q 022864 58 RSRLEDGHTVLDVGCG--WGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD--IS----TFEMEA 129 (291)
Q Consensus 58 ~~~~~~~~~vLDiGcG--~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~----~~~~~~ 129 (291)
.....++.+||-.|++ .|..+..++... +.+++.++.++...+.+.. .+.. ..+...+ .. ......
T Consensus 161 ~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 161 RARLRPGETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERAKE----LGAD-YVIDYRKEDFVREVRELTGKR 234 (342)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC-eEEecCChHHHHHHHHHhCCC
Confidence 3455678899988875 566666666655 7899999988876555432 2321 1111111 10 001124
Q ss_pred CccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 130 SYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 130 ~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.+|+++....- ..+..+.+.|+++|.++...
T Consensus 235 ~~d~~i~~~g~-------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 235 GVDVVVEHVGA-------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCcEEEECCcH-------HHHHHHHHHhhcCCEEEEEe
Confidence 68888865321 24566677889999877643
No 492
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.22 E-value=21 Score=31.37 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCc-c-hHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEcc-------ccCCc-cCCCcc
Q 022864 63 DGHTVLDVGCGW-G-SLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVAD-------ISTFE-MEASYD 132 (291)
Q Consensus 63 ~~~~vLDiGcG~-G-~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-------~~~~~-~~~~~D 132 (291)
..++|+=+|+|. | .++..|++. +.+|+.+.-++. + .....|+ .+.-..++ +...+ ....+|
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~----~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~D 74 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--E----AVRENGL-QVDSVHGDFHLPPVQAYRSAEDMPPCD 74 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--H----HHHhCCe-EEEeCCCCeeecCceEEcchhhcCCCC
Confidence 346899999983 3 455566554 678888876642 2 1223333 11111111 11111 115789
Q ss_pred EEEEcccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 133 RIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 133 ~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
+|+..--.. +...+++.+...++|++.++..
T Consensus 75 ~vilavK~~---~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 75 WVLVGLKTT---ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEEEEecCC---ChHhHHHHHhhhcCCCCEEEEe
Confidence 988764433 3456778888889999876653
No 493
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=77.22 E-value=8.1 Score=37.04 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCCCCCEEEEEcCCcchHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-CCccEEEEcc
Q 022864 60 RLEDGHTVLDVGCGWGSLSLYIAQKYSNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-ASYDRIYSIE 138 (291)
Q Consensus 60 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~i~~~~ 138 (291)
+..+..+|| +-||+|.-+..+.+.. .++.++++|+ +++..++|+.+.+.. ..+|+|++..
T Consensus 502 ~~~k~mKIL-vaCGsGiGTStmva~k-----------------Ikk~Lke~GI-~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 502 DGGKPVRIL-AVCGQGQGSSMMMKMK-----------------IKKYLDKRGI-PIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred ccCcccEEE-EECCCCchHHHHHHHH-----------------HHHHHHHcCC-CeEEEEechHhCcccCCCCCEEEEcc
Confidence 344567887 5699998777776541 5677888888 578999999887654 6789999975
Q ss_pred cc
Q 022864 139 MF 140 (291)
Q Consensus 139 ~l 140 (291)
.+
T Consensus 563 ~L 564 (602)
T PRK09548 563 HL 564 (602)
T ss_pred cc
Confidence 54
No 494
>PRK06949 short chain dehydrogenase; Provisional
Probab=77.19 E-value=17 Score=30.41 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc-----------CC
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM-----------EA 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 129 (291)
.+++||-.|+ +|..+..+++.+ .+.+|++++.+++.++.........+. ++.++.+|+.+... .+
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678888884 455555554432 378999999988876665554443332 57888888876421 03
Q ss_pred CccEEEEccc
Q 022864 130 SYDRIYSIEM 139 (291)
Q Consensus 130 ~~D~i~~~~~ 139 (291)
+.|+++.+..
T Consensus 86 ~~d~li~~ag 95 (258)
T PRK06949 86 TIDILVNNSG 95 (258)
T ss_pred CCCEEEECCC
Confidence 5799888664
No 495
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.18 E-value=9.6 Score=36.51 Aligned_cols=90 Identities=12% Similarity=0.155 Sum_probs=52.2
Q ss_pred CEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc----cC-CCccEEEEc
Q 022864 65 HTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE----ME-ASYDRIYSI 137 (291)
Q Consensus 65 ~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~~-~~~D~i~~~ 137 (291)
.+++=+||| ..+..+++.. .+.+++.+|.+++.++.+++ . ....+.+|..+.. .. +++|.+++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence 466666665 4444444432 26799999999997666543 2 4678999998842 12 678866653
Q ss_pred ccccccccHHHHHHHHHhccccCeeEEEE
Q 022864 138 EMFEHMKNYQNLLKKISKWMKEDTLLFVH 166 (291)
Q Consensus 138 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 166 (291)
-.-. .+-..+... .+.+.|+..++..
T Consensus 489 ~~~~--~~~~~iv~~-~~~~~~~~~iiar 514 (558)
T PRK10669 489 IPNG--YEAGEIVAS-AREKRPDIEIIAR 514 (558)
T ss_pred cCCh--HHHHHHHHH-HHHHCCCCeEEEE
Confidence 1110 111123333 3445677766654
No 496
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.07 E-value=17 Score=30.39 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
.+.++|=.|++. .++..+++.+ .+.+|+.++-+++..+...+.....+. ++.++.+|+.+... . +
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 357888888754 4444443322 278999999988776665555544443 68888999876420 0 3
Q ss_pred CccEEEEcccc
Q 022864 130 SYDRIYSIEMF 140 (291)
Q Consensus 130 ~~D~i~~~~~l 140 (291)
+.|+|+.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999987643
No 497
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.93 E-value=43 Score=28.06 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCc-chHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCc---------c-C-
Q 022864 63 DGHTVLDVGCGW-GSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFE---------M-E- 128 (291)
Q Consensus 63 ~~~~vLDiGcG~-G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~-~- 128 (291)
.++++|-.|.++ ++.+..+++.+ .|.+|+.++.+....+. ..+....++.++.+|+.+.. . .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467888888763 44444444432 38899988876432222 22111125778889987642 0 1
Q ss_pred CCccEEEEcccc
Q 022864 129 ASYDRIYSIEMF 140 (291)
Q Consensus 129 ~~~D~i~~~~~l 140 (291)
++.|+++.+..+
T Consensus 82 g~iD~lv~nAg~ 93 (252)
T PRK06079 82 GKIDGIVHAIAY 93 (252)
T ss_pred CCCCEEEEcccc
Confidence 568999887643
No 498
>PRK07326 short chain dehydrogenase; Provisional
Probab=76.87 E-value=15 Score=30.33 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCcc----------C-C
Q 022864 63 DGHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEM----------E-A 129 (291)
Q Consensus 63 ~~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~-~ 129 (291)
.+.+||=.|+ +|.++..+++.+ .+.+|++++.++.......+..... .++.++.+|+.+... . .
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3568888885 555555554432 2789999998887655544433322 368888899876421 0 3
Q ss_pred CccEEEEcc
Q 022864 130 SYDRIYSIE 138 (291)
Q Consensus 130 ~~D~i~~~~ 138 (291)
.+|.|+.+.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689888764
No 499
>PLN02702 L-idonate 5-dehydrogenase
Probab=76.60 E-value=54 Score=29.15 Aligned_cols=100 Identities=12% Similarity=0.206 Sum_probs=58.6
Q ss_pred HHcCCCCCCEEEEEcCC-cchHHHHHHHHCCCC-EEEEEcCCHHHHHHHHHHHHHhCCCCeEEEE---ccccC----C--
Q 022864 57 ERSRLEDGHTVLDVGCG-WGSLSLYIAQKYSNC-KITGICNSKTQKEFIEEQCRVLELQNVEIIV---ADIST----F-- 125 (291)
Q Consensus 57 ~~~~~~~~~~vLDiGcG-~G~~~~~la~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~----~-- 125 (291)
......++.+||=+|+| .|..+..+++.. ++ .++++|.++...+.++ ..|.+.+.... .+..+ +
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAF-GAPRIVIVDVDDERLSVAK----QLGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH----HhCCCEEEecCcccccHHHHHHHHhh
Confidence 34556778899999875 455666777665 55 5889998877554433 33442211111 11111 1
Q ss_pred ccCCCccEEEEcccccccccHHHHHHHHHhccccCeeEEEEe
Q 022864 126 EMEASYDRIYSIEMFEHMKNYQNLLKKISKWMKEDTLLFVHH 167 (291)
Q Consensus 126 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 167 (291)
.....+|+|+.... . ...+....+.|+++|.++...
T Consensus 250 ~~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 250 AMGGGIDVSFDCVG-----F-NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred hcCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 11245788876411 1 235778888999999976543
No 500
>PRK06194 hypothetical protein; Provisional
Probab=76.58 E-value=15 Score=31.38 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=47.3
Q ss_pred CCEEEEEcCCcchHHHHHHHHC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCCeEEEEccccCCccC-----------CC
Q 022864 64 GHTVLDVGCGWGSLSLYIAQKY--SNCKITGICNSKTQKEFIEEQCRVLELQNVEIIVADISTFEME-----------AS 130 (291)
Q Consensus 64 ~~~vLDiGcG~G~~~~~la~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----------~~ 130 (291)
+.++|=.|+ +|.++..+++.+ .+.+|+.+|.+++..+...+.....+. ++.++.+|+.+...- ++
T Consensus 6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567886665 455454444332 278999999887765555444433333 678889998874210 35
Q ss_pred ccEEEEcccc
Q 022864 131 YDRIYSIEMF 140 (291)
Q Consensus 131 ~D~i~~~~~l 140 (291)
.|+|+.+...
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 7999887654
Done!