Query 022867
Match_columns 291
No_of_seqs 153 out of 229
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08294 TIM21: TIM21; InterP 100.0 1.9E-49 4.1E-54 339.7 10.8 142 142-285 1-144 (145)
2 KOG4836 Uncharacterized conser 100.0 7.3E-40 1.6E-44 293.2 8.5 146 139-288 68-213 (215)
3 PF08695 Coa1: Cytochrome oxid 99.6 6.6E-15 1.4E-19 120.1 11.5 106 160-284 8-116 (116)
4 smart00500 SFM Splicing Factor 55.7 5.2 0.00011 28.4 0.7 27 193-221 2-31 (44)
5 PHA02669 hypothetical protein; 41.7 19 0.00042 32.7 2.2 36 154-200 8-43 (210)
6 COG3944 Capsular polysaccharid 39.5 14 0.00031 34.6 1.0 42 154-207 176-217 (226)
7 PF08799 PRP4: pre-mRNA proces 39.2 9.3 0.0002 25.2 -0.1 18 198-215 5-22 (30)
8 PF05961 Chordopox_A13L: Chord 36.6 12 0.00026 29.1 0.1 22 153-174 5-26 (68)
9 PHA03049 IMV membrane protein; 35.4 13 0.00029 28.8 0.1 22 153-174 5-26 (68)
10 PF02342 TerD: TerD domain; I 28.1 1.1E+02 0.0023 26.4 4.6 40 230-272 132-171 (186)
11 PF00630 Filamin: Filamin/ABP2 27.4 2.8E+02 0.006 21.0 6.5 40 228-268 31-77 (101)
12 PF06905 FAIM1: Fas apoptotic 25.3 3.2E+02 0.0069 24.8 7.2 25 238-265 54-78 (177)
13 PF01006 HCV_NS4a: Hepatitis C 24.4 25 0.00054 26.4 0.0 18 155-172 3-20 (56)
14 cd06263 MAM Meprin, A5 protein 24.4 3.9E+02 0.0085 21.8 7.2 49 234-285 74-136 (157)
15 PF02982 Scytalone_dh: Scytalo 23.3 1.9E+02 0.0042 26.0 5.3 46 220-273 98-143 (160)
16 PF04355 SmpA_OmlA: SmpA / Oml 23.0 1.7E+02 0.0037 21.5 4.3 13 195-207 19-31 (71)
17 COG2310 TerZ Uncharacterized p 20.0 3.1E+02 0.0066 25.2 6.0 37 236-274 134-172 (182)
No 1
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=100.00 E-value=1.9e-49 Score=339.68 Aligned_cols=142 Identities=39% Similarity=0.653 Sum_probs=78.4
Q ss_pred CceeeeecceeeeehhhHHHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCCCcccccccCc-ccccccc
Q 022867 142 KPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESR-NRAARQR 220 (291)
Q Consensus 142 Kv~rat~~s~y~~VIl~Glgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGePIkayGe~s~-nrwrRnr 220 (291)
|++|++++++|++|||+|+||+|+++|+|++|||++++|+.+||+|+++|++||+|+++||+||++||++++ +||+|||
T Consensus 1 Kv~~~~~~~~~~~vil~G~gl~g~v~Y~l~sELFs~~s~~~ifn~A~~~i~~d~~v~~~LG~~ikayGe~~~~~Rw~R~R 80 (145)
T PF08294_consen 1 KVKRATKQTSYFGVILAGLGLTGLVIYALFSELFSPSSPTRIFNRAVDRIKKDPRVQDLLGEPIKAYGEETGRNRWRRNR 80 (145)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHH-HHHHHHT----EEEE-EEE-SS-EEE-
T ss_pred ChheehcceeeeEeeeehHHHHHHhHHHHhHHHhCCCCchHHHHHHHHHHhcCHHHHHHhCCCeEEecCCCCCCcccccC
Confidence 799999999999999999999999999999999998899999999999999999999999999999999998 8999998
Q ss_pred -ccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecCC
Q 022867 221 -IPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY 285 (291)
Q Consensus 221 -I~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd~ 285 (291)
+.++.+.|+||++||+|+|||+||+|+|+||+||+|++.+++|||+||+||++|++ +|||||+
T Consensus 81 ~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V~~e~~k~~~~~~~e~~yL~vdv~g~~--ri~l~dn 144 (145)
T PF08294_consen 81 PIVSHREYDKDGREHMRMKFYVEGPRGKGVVHLEMVKDDGSGEYEYRYLYVDVPGHK--RIYLEDN 144 (145)
T ss_dssp ---EEEEE-TTS-EEEEEEEEEE-SS-EEEEEEEEE--SS-SS-EEEEEEEE-TTS----EEEE--
T ss_pred CccceEEEcCCCCEEEEEEEEEEeCCCeEEEEEEEEECCCCCCeeEEEEEEecCCCe--EEEEEcC
Confidence 66666679999999999999999999999999999997679999999999999976 9999985
No 2
>KOG4836 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.3e-40 Score=293.20 Aligned_cols=146 Identities=30% Similarity=0.580 Sum_probs=138.0
Q ss_pred CCCCceeeeecceeeeehhhHHHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCCCcccccccCcccccc
Q 022867 139 IPEKPVTFTEGASYSLIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITGYGQESRNRAAR 218 (291)
Q Consensus 139 i~eKv~rat~~s~y~~VIl~Glgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGePIkayGe~s~nrwrR 218 (291)
.+.||++++.+++|+.+||+|+||+|+++|+|++|||++.+|+.+||+||++|++||+|+.++|++||||||+++ |+||
T Consensus 68 ~~gkVke~s~nt~~~~iVI~GiGv~g~~iY~i~~ElFs~~sp~~ifn~Al~~v~~~~~~~~ifG~~iKgfGE~t~-rgRR 146 (215)
T KOG4836|consen 68 FGGKVKEASSNTFYYIIVIAGIGVTGAFIYAIFGELFSSSSPQTIFNRALELVRANPEVQGIFGESIKGFGEETR-RGRR 146 (215)
T ss_pred CccchhhccccceeeeeeeeeccHHHHhHHHHHHHHhcCCCcHHHHHHHHHHHhcChHHhhHhhhhhhhhhhhhc-Cccc
Confidence 345999999999999999999999999999999999998899999999999999999999999999999999998 6789
Q ss_pred ccccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecCCCCC
Q 022867 219 QRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESYMPA 288 (291)
Q Consensus 219 nrI~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd~~p~ 288 (291)
+||+|..| |+||.+|++|+|||+|.+.+|+|+++++.+ +|+|+|+||||||+++++..|++||+-|.
T Consensus 147 ~hVa~~~y-dk~G~~h~~m~Fhv~g~~~~g~v~~~~k~~--~g~~~~~flfVdv~~ypr~tii~~dnr~~ 213 (215)
T KOG4836|consen 147 QHVAHHKY-DKDGMEHLRMQFHVEGSEPQGHVFARLKEV--DGDYEWDFLFVDVARYPRTTIILEDNRVR 213 (215)
T ss_pred ceeeeeee-ecCCceEEEEEEEEEcCCcccchhhhhhcc--CCCCceeEEEEecCCCceeEEEccCCccc
Confidence 99999999 899999999999999999999999999876 78888888999999999999999999664
No 3
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=99.61 E-value=6.6e-15 Score=120.06 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=79.9
Q ss_pred HHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCC--Ccccccc-cCccccccccccceEEecCCCceEEE
Q 022867 160 LGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGS--PITGYGQ-ESRNRAARQRIPNRVYTDEFGIEHVE 236 (291)
Q Consensus 160 lgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGe--PIkayGe-~s~nrwrRnrI~~~~y~D~dG~eHm~ 236 (291)
+++++.++|.+..++ ..+.+|+.|++.+++||+|+++||+ ||+.... .+++ .... ..++.
T Consensus 8 ~~~~~~~~~~~~~~~----~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~~~i~G~----------~~~~---~g~a~ 70 (116)
T PF08695_consen 8 IGWGVFLFYAINSEK----KSSEYYKEALEQLRSNPEVVEALGENIPIKDGWPWISGS----------INTS---KGRAD 70 (116)
T ss_pred HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCcccccce----------eecc---CcEEE
Confidence 333345666666665 3567899999999999999999999 8886542 2331 2222 44688
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecC
Q 022867 237 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLES 284 (291)
Q Consensus 237 m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd 284 (291)
++|+|+||+++|+||+++.++...+.|+|..|.|.++ ..++|.|.|
T Consensus 71 ~~~pV~G~k~~G~v~~~a~r~~~~~~W~~~~~~v~~~--~g~~I~L~~ 116 (116)
T PF08695_consen 71 LSFPVKGPKGKGTVYVEATRSGGKDPWEILRLEVEID--DGQVIDLLD 116 (116)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCCceEEEEEEEEeC--CCCEEeCcC
Confidence 9999999999999999999985555699999999999 345777654
No 4
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=55.65 E-value=5.2 Score=28.44 Aligned_cols=27 Identities=41% Similarity=0.770 Sum_probs=19.0
Q ss_pred hchhHHHh---hCCCcccccccCccccccccc
Q 022867 193 DDGQVRVR---IGSPITGYGQESRNRAARQRI 221 (291)
Q Consensus 193 ~DprV~~~---LGePIkayGe~s~nrwrRnrI 221 (291)
.|.+|+.. ||+||+=|||.... ||+|.
T Consensus 2 ~d~eV~~~LR~lgePi~lFGE~~~~--Rr~RL 31 (44)
T smart00500 2 PDSEVIRRLRELGEPITLFGEDDQE--RRQRL 31 (44)
T ss_pred CHHHHHHHHHHcCCCeeecCCChHH--HHHHH
Confidence 46677555 49999999998754 35553
No 5
>PHA02669 hypothetical protein; Provisional
Probab=41.69 E-value=19 Score=32.73 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=24.3
Q ss_pred eehhhHHHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHh
Q 022867 154 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVR 200 (291)
Q Consensus 154 ~VIl~Glgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~ 200 (291)
+||++.+.|||+++|+|+ || .-|.+|+.+-.||++-
T Consensus 8 ~iIvavi~LTgAaiYlLi-Ei----------GLAaERanKrsRvK~n 43 (210)
T PHA02669 8 GIIVAVIYLTGAAIYLLI-EI----------GLAAERANKRSRVKAN 43 (210)
T ss_pred HHHHHHHHHHHHHHHHHH-HH----------HHHHHHhhhHHHHHHH
Confidence 467778899999999876 43 3455665555555543
No 6
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=39.52 E-value=14 Score=34.65 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.8
Q ss_pred eehhhHHHHHhhhhheeeehhccCCcchHHHHHHHHHHhhchhHHHhhCCCccc
Q 022867 154 LIILAGLGVAGAAAYAVFKELIFEPKEYKIFNKALKRIQDDGQVRVRIGSPITG 207 (291)
Q Consensus 154 ~VIl~Glgltg~v~Y~l~sELf~s~spt~iYn~Al~rIk~DprV~~~LGePIka 207 (291)
++|-+++||+|++.++++.|++- ++||.-.++.+.||-|+=|
T Consensus 176 i~iaf~~Gl~~~igiafl~e~lD------------~tIKs~edie~~l~lPvLG 217 (226)
T COG3944 176 IVIAFLAGLAGAIGIAFLLEYLD------------KTIKSEEDIEEVLDLPVLG 217 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------------hhcCCHHHHHHhhCCceee
Confidence 36778899999999999999722 4788899999999999653
No 7
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=39.23 E-value=9.3 Score=25.17 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=10.5
Q ss_pred HHhhCCCcccccccCccc
Q 022867 198 RVRIGSPITGYGQESRNR 215 (291)
Q Consensus 198 ~~~LGePIkayGe~s~nr 215 (291)
...||+||+=|||....|
T Consensus 5 LR~lgePi~lFGE~~~~R 22 (30)
T PF08799_consen 5 LRELGEPITLFGETDADR 22 (30)
T ss_dssp HHHCT--SCETT--HHHH
T ss_pred HHhcCCChhhhCCChHHH
Confidence 346799999999987654
No 8
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=36.57 E-value=12 Score=29.11 Aligned_cols=22 Identities=14% Similarity=0.462 Sum_probs=18.0
Q ss_pred eeehhhHHHHHhhhhheeeehh
Q 022867 153 SLIILAGLGVAGAAAYAVFKEL 174 (291)
Q Consensus 153 ~~VIl~Glgltg~v~Y~l~sEL 174 (291)
+++++++++++|+++|+++.--
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4577888999999999998753
No 9
>PHA03049 IMV membrane protein; Provisional
Probab=35.39 E-value=13 Score=28.83 Aligned_cols=22 Identities=9% Similarity=0.437 Sum_probs=17.8
Q ss_pred eeehhhHHHHHhhhhheeeehh
Q 022867 153 SLIILAGLGVAGAAAYAVFKEL 174 (291)
Q Consensus 153 ~~VIl~Glgltg~v~Y~l~sEL 174 (291)
++++++++++.|+++|.+++--
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3567888999999999998753
No 10
>PF02342 TerD: TerD domain; InterPro: IPR003325 This domain is found in tellurite resistance proteins, cAMP binding protein, and chemical-damaging agent resistance proteins and general stress proteins. Tellurium compounds are used in several industrial processes, although they are relatively rare in the environment. Genes associated with tellurite resistance (TeR) are found in many pathogenic bacteria []. The cellular Slime mould, Dictyostelium discoideum, contains a cAMP-binding protein, CABP1, which is composed of two subunits. The C-terminal half of these subunits contain this domain [].; GO: 0006950 response to stress; PDB: 2QNG_A 2QZ7_A 2KXV_A 2KXT_A 3IBZ_A.
Probab=28.05 E-value=1.1e+02 Score=26.43 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEE
Q 022867 230 FGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEI 272 (291)
Q Consensus 230 dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV 272 (291)
+|.+-++..+. ..+..++++..++.+. .+.|+|+-+---.
T Consensus 132 ~~~~~~~~~l~-~~~~~~a~v~~~lyr~--~~~W~~~avg~g~ 171 (186)
T PF02342_consen 132 PGTELARYDLD-DFSGETALVLAELYRR--GGGWKFRAVGQGF 171 (186)
T ss_dssp TTEEEEEEECH-HCTT-SEEEEEEEEEE--TTCEEEEEEEEEE
T ss_pred CcceeEEEecc-CCCCceEEEEEEEEEc--CCeEEEEEEEEec
Confidence 77777775555 6788999999999997 7999998775443
No 11
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=27.36 E-value=2.8e+02 Score=21.01 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=28.3
Q ss_pred cCCCceEE----EEEEEEEcCCCce---EEEEEEEEcCCCCceEEEEE
Q 022867 228 DEFGIEHV----EVNFYIRGPHGAG---KVFTEMFKDKEDKQWKFTYL 268 (291)
Q Consensus 228 D~dG~eHm----~m~F~VeGpkg~G---~V~lEm~K~~~~g~weYryL 268 (291)
|..|.... .+++.|.+|.+.. .+.+++.++ .+|.|...|.
T Consensus 31 d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~v~~~-~~G~y~v~y~ 77 (101)
T PF00630_consen 31 DAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVEVIDN-GDGTYTVSYT 77 (101)
T ss_dssp TTTSSBEESTSSEEEEEEESSSSESS--EEEEEEEEE-SSSEEEEEEE
T ss_pred cCCCCccccCCceeEEEEeCCCCCccccccceEEEEC-CCCEEEEEEE
Confidence 55565443 5778889998874 677777665 5788887775
No 12
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=25.34 E-value=3.2e+02 Score=24.75 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.6
Q ss_pred EEEEEcCCCceEEEEEEEEcCCCCceEE
Q 022867 238 NFYIRGPHGAGKVFTEMFKDKEDKQWKF 265 (291)
Q Consensus 238 ~F~VeGpkg~G~V~lEm~K~~~~g~weY 265 (291)
.|.|.+...+..+.+++.. ...|+|
T Consensus 54 ~F~ig~~~~k~~I~I~~~~---g~~YeY 78 (177)
T PF06905_consen 54 TFTIGGKNTKCEINIEAVS---GFAYEY 78 (177)
T ss_dssp EEEETTTTEEEEEEEEEET---TTEEEE
T ss_pred EEEECCCceEEEEEEEecC---CceEEE
Confidence 5777666778888888863 455665
No 13
>PF01006 HCV_NS4a: Hepatitis C virus non-structural protein NS4a; InterPro: IPR000745 NS4a (non-structural protein) forms an integral part of the NS3 serine protease in Hepatitis C virus, as it is required in a number of cases as a cofactor of cleavage [, ]. It has also been reported that NS4a interacts with NS4b and NS3 to form a multi-subunit replicase complex [].; GO: 0016032 viral reproduction, 0044423 virion part; PDB: 3M5M_C 2FM2_D 3KNX_D 2A4R_B 2F9V_B 2OBQ_B 2O8M_C 3KEE_F 3KF2_C 1NS3_D ....
Probab=24.44 E-value=25 Score=26.42 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=0.0
Q ss_pred ehhhHHHHHhhhhheeee
Q 022867 155 IILAGLGVAGAAAYAVFK 172 (291)
Q Consensus 155 VIl~Glgltg~v~Y~l~s 172 (291)
++++|++++++++|.+++
T Consensus 3 ~vlvGg~lAa~aay~~~t 20 (56)
T PF01006_consen 3 WVLVGGALAALAAYCLTT 20 (56)
T ss_dssp ------------------
T ss_pred EEEEhHHHHHHHHHHhcc
Confidence 567899999999988764
No 14
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=24.36 E-value=3.9e+02 Score=21.84 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=25.1
Q ss_pred EEEEEEEEEcCCCceEEEEEEEEcCC-------------CCceEEEEEEEEECCC-CceEEEecCC
Q 022867 234 HVEVNFYIRGPHGAGKVFTEMFKDKE-------------DKQWKFTYLIVEITSP-YKAQLMLESY 285 (291)
Q Consensus 234 Hm~m~F~VeGpkg~G~V~lEm~K~~~-------------~g~weYryL~VdV~g~-~r~~IiLEd~ 285 (291)
-|++.+|..|+. .|.+.|.+..+.. ...|. ...|++... ++-+|++|-.
T Consensus 74 Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~--~~~v~l~~~~~~fqi~fe~~ 136 (157)
T cd06263 74 CLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQ--EAEVTLSASSKPFQVVFEGV 136 (157)
T ss_pred EEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeE--EEEEEECCCCCceEEEEEEE
Confidence 355555555553 3455555543321 24455 455555554 5667776643
No 15
>PF02982 Scytalone_dh: Scytalone dehydratase; InterPro: IPR004235 Scytalone dehydratase is a member of the group of enzymes involved in fungal melanin biosynthesis. It was first identified in a phytopathogenic fungus, Magnaporthe grisea (Rice blast fungus), which causes rice blast disease. Scytalone dehydratase is a molecular target of inhibitor design efforts aimed at protecting rice plants from fungal disease [, ].; GO: 0030411 scytalone dehydratase activity, 0006582 melanin metabolic process; PDB: 4STD_A 3STD_A 6STD_A 7STD_C 1STD_A 5STD_C 1IDP_B 2STD_A.
Probab=23.29 E-value=1.9e+02 Score=25.97 Aligned_cols=46 Identities=37% Similarity=0.497 Sum_probs=30.4
Q ss_pred cccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEEC
Q 022867 220 RIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEIT 273 (291)
Q Consensus 220 rI~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~ 273 (291)
|++|++|+|.+..+ +.. +| .|.|+....-.|- +|+|.|.=|.-+|.
T Consensus 98 RaaHqry~D~~~~~-V~~----kG-h~h~~~~h~Y~Kv--dG~WK~agl~P~v~ 143 (160)
T PF02982_consen 98 RAAHQRYTDDSLTE-VKA----KG-HGHGTNTHWYRKV--DGVWKFAGLKPEVR 143 (160)
T ss_dssp EEEEEEESSTT--S-EEE----EE-EEEEEEEEEEEEE--TTEEEEEEEEEEEE
T ss_pred EeeeeeeeCCCccE-EEe----ee-ccceeEEEEEEEe--CCEEEEeeecccee
Confidence 58999998766554 333 22 3566666666664 89999988876663
No 16
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=22.95 E-value=1.7e+02 Score=21.47 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=9.8
Q ss_pred hhHHHhhCCCccc
Q 022867 195 GQVRVRIGSPITG 207 (291)
Q Consensus 195 prV~~~LGePIka 207 (291)
.+|..+||.|..-
T Consensus 19 ~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 19 DQVRALLGSPSLR 31 (71)
T ss_dssp HHHHHHHTS-SEE
T ss_pred HHHHHhcCCCCcc
Confidence 6899999999653
No 17
>COG2310 TerZ Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 [Signal transduction mechanisms]
Probab=20.01 E-value=3.1e+02 Score=25.17 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=28.3
Q ss_pred EEEEEEEc--CCCceEEEEEEEEcCCCCceEEEEEEEEECC
Q 022867 236 EVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLIVEITS 274 (291)
Q Consensus 236 ~m~F~VeG--pkg~G~V~lEm~K~~~~g~weYryL~VdV~g 274 (291)
..+|.+.+ ...+|++.+|..+. .++|+|+-+--=..|
T Consensus 134 l~ry~Ls~d~~~etavi~~eLyR~--~~~Wkf~AvGqg~~G 172 (182)
T COG2310 134 LARYDLSEDFSQETAVILGELYRH--NGEWKFTAVGQGFNG 172 (182)
T ss_pred EEEEEccccccceeeEEEEEEEEc--CCeEEEEEEeeccCC
Confidence 34577877 56799999999996 799999987654433
Done!