Query 022867
Match_columns 291
No_of_seqs 153 out of 229
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 12:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ciu_A TIM21P, import inner me 100.0 2.7E-39 9.1E-44 271.0 12.0 109 175-285 2-120 (127)
2 1mzw_B U4/U6 snRNP 60KDA prote 45.2 4.7 0.00016 25.8 0.1 17 199-215 7-23 (31)
3 2dk4_A PRE-mRNA-splicing facto 42.1 6.4 0.00022 30.0 0.4 28 192-219 27-57 (76)
4 3e8v_A Possible transglutamina 40.1 1E+02 0.0034 23.6 6.9 49 222-283 33-81 (82)
5 3qby_A Hepatoma-derived growth 23.1 24 0.00081 27.1 0.8 26 172-197 66-91 (94)
6 3fyf_A Protein BVU-3222; struc 22.0 1.5E+02 0.005 25.8 5.6 51 226-285 112-163 (176)
7 3ibz_A Putative tellurium resi 19.9 82 0.0028 27.2 3.6 42 224-269 129-173 (191)
8 2oxg_Z SOXZ protein; immunoglo 19.7 3E+02 0.01 21.4 6.6 28 237-266 75-102 (108)
9 2c9a_A Receptor-type tyrosine- 19.5 4.6E+02 0.016 23.1 8.6 54 229-284 71-141 (259)
10 2d7n_A Filamin-C; beta-sandwic 19.2 1.3E+02 0.0045 22.7 4.3 30 237-268 24-53 (93)
No 1
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=270.98 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=101.8
Q ss_pred ccCCcchHHHHHHHHHHhhchhHHHhh----C----CCccccccc-Ccccccccc-ccceEEecCCCceEEEEEEEEEcC
Q 022867 175 IFEPKEYKIFNKALKRIQDDGQVRVRI----G----SPITGYGQE-SRNRAARQR-IPNRVYTDEFGIEHVEVNFYIRGP 244 (291)
Q Consensus 175 f~s~spt~iYn~Al~rIk~DprV~~~L----G----ePIkayGe~-s~nrwrRnr-I~~~~y~D~dG~eHm~m~F~VeGp 244 (291)
|++++++.+||+||++|++||+|+++| | +||+|||++ +++||+||| |+|++++|+||+|||+|+|||+||
T Consensus 2 ~spss~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~ 81 (127)
T 2ciu_A 2 AMGSGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESK 81 (127)
T ss_dssp ---CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECS
T ss_pred cCCCCchhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcC
Confidence 456679999999999999999999999 6 899999999 889999999 999999999999999999999999
Q ss_pred CCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEecCC
Q 022867 245 HGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLESY 285 (291)
Q Consensus 245 kg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLEd~ 285 (291)
+++|+||+||+|+++.++|+|+||+|||+|++ +||||+.
T Consensus 82 ~~~G~V~le~~k~~~~~~~ef~Yl~vDV~g~~--Ri~Le~p 120 (127)
T 2ciu_A 82 KKIALVHLEAKESKQNYQPDFINMYVDVPGEK--RYYLIKP 120 (127)
T ss_dssp SCEEEEEEEEECCSSCSSCEEEEEEEECTTSC--CEEEECC
T ss_pred CCcEEEEEEEEecCCCCceEEEEEEEEeCCCc--eEEEECC
Confidence 99999999999988899999999999999987 8999994
No 2
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=45.22 E-value=4.7 Score=25.79 Aligned_cols=17 Identities=35% Similarity=0.681 Sum_probs=13.6
Q ss_pred HhhCCCcccccccCccc
Q 022867 199 VRIGSPITGYGQESRNR 215 (291)
Q Consensus 199 ~~LGePIkayGe~s~nr 215 (291)
..||+||+=|||....|
T Consensus 7 R~lgePi~lFGE~~~~R 23 (31)
T 1mzw_B 7 RALGEPITLFGEGPAER 23 (31)
T ss_dssp HHTTCCSEETTCCHHHH
T ss_pred HHcCCCeeecCCChHHH
Confidence 45799999999987653
No 3
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=42.07 E-value=6.4 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=19.7
Q ss_pred hhchhHHHhh---CCCcccccccCccccccc
Q 022867 192 QDDGQVRVRI---GSPITGYGQESRNRAARQ 219 (291)
Q Consensus 192 k~DprV~~~L---GePIkayGe~s~nrwrRn 219 (291)
..|.+|+..| |+||+=|||....|..|=
T Consensus 27 ~~d~eV~~~LR~lgEPi~LFGE~~~~Rr~RL 57 (76)
T 2dk4_A 27 LSRQEVIRRLRERGEPIRLFGETDYDAFQRL 57 (76)
T ss_dssp SCHHHHHHHHHHHTCCSSCTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCeeecCCChHHHHHHH
Confidence 4566676665 999999999876543333
No 4
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=40.13 E-value=1e+02 Score=23.62 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=34.3
Q ss_pred cceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEEec
Q 022867 222 PNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLMLE 283 (291)
Q Consensus 222 ~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~IiLE 283 (291)
..+.++|.+|.-.+.+ |.|.+++-+.| +|.|-|.-| +....++-.|+|+
T Consensus 33 ~~~~~TD~~G~~s~~~--------G~Gd~~v~A~k---~G~~g~a~l--~~~~~~~~~i~L~ 81 (82)
T 3e8v_A 33 VATKHTDRSGHASLTA--------GKGDMLVWASK---DGRFGYSKL--SFGKDNELKITLD 81 (82)
T ss_dssp EEEEECCTTSEEEEEC--------CSEEEEEEEEE---TTEEEEEEE--EETTBCEEEEECC
T ss_pred EEEEEECCCceEEEEE--------cCCceEEEecc---CCEEEEEEe--ccCCCceEEEEeC
Confidence 3456778899866655 89999999988 488886654 4454445566653
No 5
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=23.08 E-value=24 Score=27.05 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.2
Q ss_pred ehhccCCcchHHHHHHHHHHhhchhH
Q 022867 172 KELIFEPKEYKIFNKALKRIQDDGQV 197 (291)
Q Consensus 172 sELf~s~spt~iYn~Al~rIk~DprV 197 (291)
.|-|..++....|++||+.|++||.|
T Consensus 66 ~~~~~k~~k~k~F~~Al~Eien~p~~ 91 (94)
T 3qby_A 66 KDKYGKPNKRKGFNEGLWEIQNNPHA 91 (94)
T ss_dssp HHHHCSCCSSTTHHHHHHHHHHCTTS
T ss_pred HHHHccCccHHHHHHHHHHHhhCCCC
Confidence 45556666788999999999999976
No 6
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=21.97 E-value=1.5e+02 Score=25.82 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=37.2
Q ss_pred EecCCCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEEEEEECCC-CceEEEecCC
Q 022867 226 YTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYLIVEITSP-YKAQLMLESY 285 (291)
Q Consensus 226 y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL~VdV~g~-~r~~IiLEd~ 285 (291)
.+|+.|. +.+.|.|.|..-+..|.+.+... +| +--|+|.-. .+.+|-+...
T Consensus 112 ~~dKKGn--~~~~f~v~g~~dsa~v~i~l~~g--~n-----~asv~V~pnfN~n~itf~G~ 163 (176)
T 3fyf_A 112 RQDKDGN--VYYNYGINGIAVSATVSIVLTGG--TN-----QASVTINPNFSGNTLTMNGY 163 (176)
T ss_dssp EECTTCC--EEEEEEEECSSCEEEEEEEECTT--SS-----EEEEEEEETTCCCCEEEEEE
T ss_pred EEccCCc--EEEEEEEcccceEEEEEEEEeCC--CC-----eEEEEEccccCCCceEEEEE
Confidence 4578888 77889999999999999999763 34 445666654 5667765543
No 7
>3ibz_A Putative tellurium resistant like protein TERD; structural genomics, stress protein, tellurium resistance; 1.78A {Streptomyces coelicolor A3}
Probab=19.91 E-value=82 Score=27.21 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=30.3
Q ss_pred eEEecC-CCceEEEEEEEEEc--CCCceEEEEEEEEcCCCCceEEEEEE
Q 022867 224 RVYTDE-FGIEHVEVNFYIRG--PHGAGKVFTEMFKDKEDKQWKFTYLI 269 (291)
Q Consensus 224 ~~y~D~-dG~eHm~m~F~VeG--pkg~G~V~lEm~K~~~~g~weYryL~ 269 (291)
+...|. +|.|- .+|.+.+ ..-+++|..|..+. .|+|+|+-+-
T Consensus 129 irv~d~~~g~el--ar~~l~~~~~~etA~v~~elYR~--~g~WkfrAvG 173 (191)
T 3ibz_A 129 IRVVNQAGEAEI--ARYDLSEDASTETAMVFGELYRH--GAEWKFRAIG 173 (191)
T ss_dssp EEEEETTTTEEE--EEEEHHHHSTTCSEEEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEECCCCcEE--EEEECCCCCCCcEEEEEEEEEEe--CCcEEEEEee
Confidence 334453 66664 4566763 56799999999997 6999998763
No 8
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=19.66 E-value=3e+02 Score=21.44 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=21.7
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEE
Q 022867 237 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFT 266 (291)
Q Consensus 237 m~F~VeGpkg~G~V~lEm~K~~~~g~weYr 266 (291)
++|.++|+ +.|.+.+.+..+ .++.|+..
T Consensus 75 ~~F~~~~~-~~g~l~v~~~Dn-~G~~~~~~ 102 (108)
T 2oxg_Z 75 FEFDAKVD-AAGEFKFTWYDD-DGSVYEDV 102 (108)
T ss_dssp EEEEEEEC-SSEEEEEEEEET-TSCEEEEE
T ss_pred EEEEEecC-CCcEEEEEEEEC-CCCEEEEE
Confidence 56788876 467999999876 57888865
No 9
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein, hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL; 2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Probab=19.48 E-value=4.6e+02 Score=23.11 Aligned_cols=54 Identities=13% Similarity=0.314 Sum_probs=34.9
Q ss_pred CCCceEEEEEEEEEcC--CCceEEEEEEEEcC-------------CCCceEEEEEEEEECC--CCceEEEecC
Q 022867 229 EFGIEHVEVNFYIRGP--HGAGKVFTEMFKDK-------------EDKQWKFTYLIVEITS--PYKAQLMLES 284 (291)
Q Consensus 229 ~dG~eHm~m~F~VeGp--kg~G~V~lEm~K~~-------------~~g~weYryL~VdV~g--~~r~~IiLEd 284 (291)
..+..-+++.+|+.|+ .+.|.+.|.+..+. ....|... .|++.. ...-+|++|.
T Consensus 71 ~~~~~Cl~F~YhM~G~~g~~~G~L~V~v~~~~~~~~~~lW~~sG~qg~~W~~~--~v~l~~~~~~~fqvvFeg 141 (259)
T 2c9a_A 71 ENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA--ELAISTFWPNFYQVIFEV 141 (259)
T ss_dssp CSSCCEEEEEEEEECSSSSCSEEEEEEEEETTCCCCSCSEEECCCCCCCEEEE--EEEECCCTTSCEEEEEEE
T ss_pred CCCCcEEEEEEEeecCCCCCCcEEEEEEEeCCCccceEEEEEeCCCCCceEEE--EEEeecCCCCceEEEEEE
Confidence 3445678888889995 56788888876542 12346644 455554 4567888775
No 10
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=19.17 E-value=1.3e+02 Score=22.72 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.0
Q ss_pred EEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 022867 237 VNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 268 (291)
Q Consensus 237 m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL 268 (291)
|+..|.+|.|+ .+..++..+ .+|.|+..|.
T Consensus 24 l~v~V~~PsG~-~~~~~v~d~-~dGtY~v~yt 53 (93)
T 2d7n_A 24 LTGEVRMPSGK-TARPNITDN-KDGTITVRYA 53 (93)
T ss_dssp EEEEEECTTSC-EECCEEEEC-SSSCEEEEEC
T ss_pred EEEEEECCCCC-ccceEEEEC-CCCEEEEEEE
Confidence 45678999987 577777665 6788886653
Done!