Query 022867
Match_columns 291
No_of_seqs 153 out of 229
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 12:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022867.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022867hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w6ga3 d.17.2.1 (A:97-211) Co 60.4 17 0.0012 27.3 7.7 20 182-201 7-26 (115)
2 d1w2za3 d.17.2.1 (A:99-206) Co 59.8 2.3 0.00017 32.1 2.5 90 182-291 8-102 (108)
3 d1d6za3 d.17.2.1 (A:186-300) C 53.2 6.6 0.00048 29.8 4.2 20 183-202 6-25 (115)
4 d2dk4a1 a.140.6.1 (A:8-70) Pre 39.3 3 0.00022 29.1 0.0 27 193-221 21-50 (63)
5 d2nlua1 b.34.9.2 (A:1-100) Hep 20.2 17 0.0012 26.3 1.2 26 173-198 71-96 (100)
6 d1eysh1 b.41.1.1 (H:59-259) Ph 17.0 1.6E+02 0.012 23.8 7.0 39 240-281 97-137 (201)
7 d1iz6a1 b.34.5.2 (A:2-70) Euka 16.4 1.4E+02 0.01 19.7 5.5 38 229-266 19-58 (69)
8 d1r4ga_ a.8.5.1 (A:) RNA polym 15.1 31 0.0023 22.7 1.5 22 180-201 20-41 (53)
9 d2i5nh1 b.41.1.1 (H:37-258) Ph 13.3 1.9E+02 0.014 23.6 6.6 39 240-281 120-160 (222)
10 d2dj4a1 b.1.18.10 (A:8-108) Fi 11.9 1.2E+02 0.0085 20.9 4.1 35 230-268 33-67 (101)
No 1
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=60.44 E-value=17 Score=27.34 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhchhHHHhh
Q 022867 182 KIFNKALKRIQDDGQVRVRI 201 (291)
Q Consensus 182 ~iYn~Al~rIk~DprV~~~L 201 (291)
.-|..|-+.+++||+++++|
T Consensus 7 eE~~~~e~~~~~dp~~~~al 26 (115)
T d1w6ga3 7 EEFEVVEQLLATDERWLKAL 26 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHH
Confidence 45889999999999999998
No 2
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=59.82 E-value=2.3 Score=32.08 Aligned_cols=90 Identities=7% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhchhHHHhh---CCCcccccccCccccccccccceEEecCCCceEEEEEEEEEcCCCceEEEEEEEEcC
Q 022867 182 KIFNKALKRIQDDGQVRVRI---GSPITGYGQESRNRAARQRIPNRVYTDEFGIEHVEVNFYIRGPHGAGKVFTEMFKDK 258 (291)
Q Consensus 182 ~iYn~Al~rIk~DprV~~~L---GePIkayGe~s~nrwrRnrI~~~~y~D~dG~eHm~m~F~VeGpkg~G~V~lEm~K~~ 258 (291)
.-|..|.+.+++||+++++| |-++..---. .|.--. +-+.+|+.-++.-.+++++...+ |++=+
T Consensus 8 eE~~~a~~~~~~dp~~~~al~~RGId~~~V~~d---pw~~G~-----~~~e~~~Rl~~~~~f~r~~~~N~--YA~PI--- 74 (108)
T d1w2za3 8 DEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCS---SFTMGW-----FGEEKNVRTVRLDCFMKESTVNI--YVRPI--- 74 (108)
T ss_dssp HHHHHHTTGGGGCHHHHHHHHHHTCCGGGEEEE---EEECCC-----SSCSCCCCEEEEEEEECTTCSCG--GGSBC---
T ss_pred HHHHHHHHHHHhCHHHHHHHHHcCCChhhEEEe---cccccc-----cCCCCCceEEEEEEEEecCCCCc--ccccc---
Confidence 35889999999999999998 6543321111 111000 11245666666666766432111 11111
Q ss_pred CCCceEEEEEEEEECCCCceEEEecCC--CCCCCC
Q 022867 259 EDKQWKFTYLIVEITSPYKAQLMLESY--MPAAPA 291 (291)
Q Consensus 259 ~~g~weYryL~VdV~g~~r~~IiLEd~--~p~~~~ 291 (291)
.| -...||++.. ..|=++|+ +|.|++
T Consensus 75 -eG----l~~vVDl~~~--~Vi~i~D~~~vPiP~~ 102 (108)
T d1w2za3 75 -TG----ITIVADLDLM--KIVEYHDRDIEAVPTA 102 (108)
T ss_dssp -CS----EEEEEETTTT--EEEEEEECCCCCCCCC
T ss_pred -Cc----cEEEEECCCC--EEEEEECCCCccCCCC
Confidence 11 2456777753 36668888 666654
No 3
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=53.22 E-value=6.6 Score=29.76 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhchhHHHhhC
Q 022867 183 IFNKALKRIQDDGQVRVRIG 202 (291)
Q Consensus 183 iYn~Al~rIk~DprV~~~LG 202 (291)
-|..|-+.+++||+++++|-
T Consensus 6 e~~~~e~~~~~dp~~~aal~ 25 (115)
T d1d6za3 6 DFASVQNIINNSEEFAAAVK 25 (115)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHH
Confidence 47889999999999999993
No 4
>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.26 E-value=3 Score=29.14 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=19.7
Q ss_pred hchhHHHhh---CCCcccccccCccccccccc
Q 022867 193 DDGQVRVRI---GSPITGYGQESRNRAARQRI 221 (291)
Q Consensus 193 ~DprV~~~L---GePIkayGe~s~nrwrRnrI 221 (291)
.|.+|+..| |+||.=|||....| |+|.
T Consensus 21 ~~~eV~~~LR~lgePI~lFGE~~~~r--r~RL 50 (63)
T d2dk4a1 21 SRQEVIRRLRERGEPIRLFGETDYDA--FQRL 50 (63)
T ss_dssp CHHHHHHHHHHHTCCSSCTTCCHHHH--HHHH
T ss_pred CHHHHHHHHHHcCCCeehhcCChHHH--HHHH
Confidence 456777766 99999999987654 4443
No 5
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.17 E-value=17 Score=26.27 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=20.2
Q ss_pred hhccCCcchHHHHHHHHHHhhchhHH
Q 022867 173 ELIFEPKEYKIFNKALKRIQDDGQVR 198 (291)
Q Consensus 173 ELf~s~spt~iYn~Al~rIk~DprV~ 198 (291)
|-+........|.+||+.+++||.+.
T Consensus 71 ~~~~~~~k~~~f~~Av~e~e~~p~~~ 96 (100)
T d2nlua1 71 EKFGKPNKRKGFSEGLWEIENNPTVK 96 (100)
T ss_dssp HHHSCCSCCHHHHHHHHHHHTCSSCS
T ss_pred HHHhcccchHHHHHHHHHHHhCcccc
Confidence 33355566789999999999999865
No 6
>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}
Probab=17.04 E-value=1.6e+02 Score=23.76 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=26.7
Q ss_pred EEEcCCC-c-eEEEEEEEEcCCCCceEEEEEEEEECCCCceEEE
Q 022867 240 YIRGPHG-A-GKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 281 (291)
Q Consensus 240 ~VeGpkg-~-G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~Ii 281 (291)
.|.|.-| + |+|.=-++. ..+|..+||.||+.+-.+..++
T Consensus 97 ~V~~~DG~~vGtV~Dv~vD---~~e~~vRYleVdtg~ggk~vLv 137 (201)
T d1eysh1 97 TVVGLDGEVAGTVSDVWVD---RSEPQIRYLEVEVAANKKKVLL 137 (201)
T ss_dssp EEECSSSCEEEEEEEEEEE---TTTTEEEEEEEEETTTCCEEEE
T ss_pred eeEcCCCCEEEEEEEEEEE---CCCCcEEEEEEEecCCCcEEEE
Confidence 4556655 3 777666665 4789999999999765444444
No 7
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=16.44 E-value=1.4e+02 Score=19.74 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=27.4
Q ss_pred CCCceEEEEEEEE-E-cCCCceEEEEEEEEcCCCCceEEE
Q 022867 229 EFGIEHVEVNFYI-R-GPHGAGKVFTEMFKDKEDKQWKFT 266 (291)
Q Consensus 229 ~dG~eHm~m~F~V-e-Gpkg~G~V~lEm~K~~~~g~weYr 266 (291)
-||.-+..+.|.- + |.+|.+.+++++..-..+...+.+
T Consensus 19 ~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~ 58 (69)
T d1iz6a1 19 IDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIV 58 (69)
T ss_dssp ETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEE
Confidence 4888888888855 4 445899999999876555555543
No 8
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=15.13 E-value=31 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHhhchhHHHhh
Q 022867 180 EYKIFNKALKRIQDDGQVRVRI 201 (291)
Q Consensus 180 pt~iYn~Al~rIk~DprV~~~L 201 (291)
.-+.|=+.+.+|+.|++|.+++
T Consensus 20 ~K~aYi~~L~~Cktd~EV~evM 41 (53)
T d1r4ga_ 20 EKAAYVKSLSKCKTDQEVKAVM 41 (53)
T ss_dssp HHHHHHHHHHTCCSSHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHH
Confidence 5788999999999999998875
No 9
>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=13.29 E-value=1.9e+02 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=26.9
Q ss_pred EEEcCCC--ceEEEEEEEEcCCCCceEEEEEEEEECCCCceEEE
Q 022867 240 YIRGPHG--AGKVFTEMFKDKEDKQWKFTYLIVEITSPYKAQLM 281 (291)
Q Consensus 240 ~VeGpkg--~G~V~lEm~K~~~~g~weYryL~VdV~g~~r~~Ii 281 (291)
.|-|.-| -|+|.=-.+. ..+|..+||.||+.+-.+..++
T Consensus 120 ~V~g~DGekIGtV~DvwVD---~~e~~vRYleVetg~ggk~vLv 160 (222)
T d2i5nh1 120 PVVAADGVEAGTVTDLWVD---RSEHYFRYLELSVAGSARTALI 160 (222)
T ss_dssp EEECTTSCEEEEEEEEEEE---TTTTEEEEEEEEETTTTEEEEE
T ss_pred eeEcCCCCeeeEEEEEEEe---CCCCeEEEEEEEeCCCCceEee
Confidence 4556655 4777666665 4789999999999875544443
No 10
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.92 E-value=1.2e+02 Score=20.88 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCceEEEEEEEEEcCCCceEEEEEEEEcCCCCceEEEEE
Q 022867 230 FGIEHVEVNFYIRGPHGAGKVFTEMFKDKEDKQWKFTYL 268 (291)
Q Consensus 230 dG~eHm~m~F~VeGpkg~G~V~lEm~K~~~~g~weYryL 268 (291)
-|...+ ...|.||.|.= +.+++.++ .+|.|+..|.
T Consensus 33 aG~g~l--~v~i~~p~g~~-~~~~v~~~-~dG~y~v~y~ 67 (101)
T d2dj4a1 33 AGLAPL--EVRVLGPRGLV-EPVNVVDN-GDGTHTVTYT 67 (101)
T ss_dssp TCSCCE--EEEEECSSSCE-ECCCCEEC-SSSEEEEEEC
T ss_pred CCCCCE--EEEEEECCCCE-eEEEEEeC-CCCEEEEEEE
Confidence 355544 45689998763 55666554 5788876554
Done!