Query 022868
Match_columns 291
No_of_seqs 147 out of 211
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 06:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02601 beta-carotene hydroxy 100.0 5E-111 1E-115 775.9 24.2 279 1-290 1-300 (303)
2 PF04116 FA_hydroxylase: Fatty 99.4 3.5E-13 7.5E-18 103.0 6.7 107 134-249 5-114 (114)
3 PLN02434 fatty acid hydroxylas 98.9 1.1E-08 2.3E-13 93.9 10.2 110 138-259 95-215 (237)
4 COG3000 ERG3 Sterol desaturase 98.4 4.1E-06 9E-11 76.4 11.2 113 135-259 104-222 (271)
5 PLN02869 fatty aldehyde decarb 97.5 0.00011 2.4E-09 75.6 5.5 112 135-262 136-264 (620)
6 KOG0539 Sphingolipid fatty aci 89.4 1.9 4.2E-05 40.6 8.1 98 139-249 96-209 (240)
7 KOG0874 Sphingolipid hydroxyla 85.8 1.2 2.7E-05 42.4 4.6 27 135-162 131-160 (287)
8 PLN02220 delta-9 acyl-lipid de 79.0 7.9 0.00017 37.2 7.3 18 135-152 67-84 (299)
9 PLN02434 fatty acid hydroxylas 71.5 14 0.0003 34.7 6.7 93 156-254 29-133 (237)
10 PF11947 DUF3464: Protein of u 69.6 24 0.00051 31.4 7.4 30 91-131 56-85 (153)
11 PLN02598 omega-6 fatty acid de 61.7 26 0.00055 35.2 6.8 20 205-226 132-151 (421)
12 TIGR02230 ATPase_gene1 F0F1-AT 60.4 58 0.0013 27.1 7.6 25 98-122 31-55 (100)
13 PF06072 Herpes_US9: Alphaherp 59.8 25 0.00055 27.2 5.0 23 90-112 16-39 (60)
14 KOG0872 Sterol C5 desaturase [ 59.5 12 0.00026 36.6 4.0 28 135-162 137-165 (312)
15 PLN02505 omega-6 fatty acid de 58.9 13 0.00029 36.7 4.2 99 168-275 45-171 (381)
16 PF08006 DUF1700: Protein of u 55.0 1.2E+02 0.0025 26.2 8.9 17 201-217 145-161 (181)
17 cd01060 Membrane-FADS-like The 50.1 18 0.00039 27.7 2.9 36 212-249 14-61 (122)
18 PLN02220 delta-9 acyl-lipid de 48.9 39 0.00084 32.6 5.5 36 203-249 68-119 (299)
19 cd03508 Delta4-sphingolipid-FA 46.5 24 0.00052 33.4 3.7 84 165-249 9-106 (289)
20 KOG1287 Amino acid transporter 45.4 1.1E+02 0.0023 31.8 8.2 130 85-240 305-452 (479)
21 PLN03199 delta6-acyl-lipid des 43.8 36 0.00078 34.3 4.7 30 195-226 158-187 (485)
22 KOG0873 C-4 sterol methyl oxid 39.5 32 0.00069 33.4 3.4 47 116-162 107-157 (283)
23 cd03511 Rhizopine-oxygenase-li 37.7 69 0.0015 29.2 5.2 36 212-249 57-104 (285)
24 COG5547 Small integral membran 36.2 32 0.00069 26.8 2.3 17 175-191 14-30 (62)
25 PRK13755 putative mercury tran 36.0 3.2E+02 0.0069 24.4 8.6 104 105-226 11-128 (139)
26 PF04678 DUF607: Protein of un 35.6 1E+02 0.0022 27.1 5.7 47 93-144 83-129 (180)
27 PF15018 InaF-motif: TRP-inter 33.1 32 0.00069 24.4 1.7 9 123-131 24-32 (38)
28 COG0598 CorA Mg2+ and Co2+ tra 32.9 55 0.0012 30.8 3.8 49 169-218 257-317 (322)
29 PF05232 BTP: Bacterial Transm 30.3 1.1E+02 0.0024 23.3 4.4 38 173-216 15-52 (67)
30 PF13194 DUF4010: Domain of un 29.4 4.4E+02 0.0096 24.0 9.4 21 165-185 120-142 (211)
31 cd03510 Rhizobitoxine-FADS-lik 27.9 97 0.0021 26.9 4.2 68 174-249 2-82 (175)
32 PF06645 SPC12: Microsomal sig 27.2 54 0.0012 25.6 2.3 40 170-209 9-49 (76)
33 PF10277 Frag1: Frag1/DRAM/Sfk 25.8 4E+02 0.0087 22.4 8.1 58 170-227 90-147 (215)
34 PF11674 DUF3270: Protein of u 25.0 65 0.0014 26.5 2.5 18 173-190 47-64 (90)
35 PF08507 COPI_assoc: COPI asso 24.5 4.1E+02 0.009 22.1 7.9 22 200-221 88-109 (136)
36 PF06522 B12D: NADH-ubiquinone 24.0 73 0.0016 24.5 2.5 27 193-219 4-31 (73)
37 PF04246 RseC_MucC: Positive r 23.4 74 0.0016 26.2 2.6 44 175-218 72-115 (135)
38 PF10520 Kua-UEV1_localn: Kua- 23.2 2.4E+02 0.0053 25.5 6.0 44 241-285 127-172 (178)
39 PF11014 DUF2852: Protein of u 22.8 82 0.0018 27.0 2.8 25 182-213 11-35 (115)
40 PF14235 DUF4337: Domain of un 22.0 1E+02 0.0023 27.0 3.3 54 154-215 99-153 (157)
41 COG4682 Predicted membrane pro 21.8 68 0.0015 28.1 2.1 49 164-212 65-118 (128)
42 PF12270 Cyt_c_ox_IV: Cytochro 21.2 77 0.0017 27.8 2.3 43 166-213 82-124 (137)
43 PF02319 E2F_TDP: E2F/DP famil 20.5 65 0.0014 24.4 1.6 30 89-118 27-59 (71)
44 KOG1600 Fatty acid desaturase 20.3 1.3E+02 0.0028 29.9 3.9 39 203-249 79-130 (321)
No 1
>PLN02601 beta-carotene hydroxylase
Probab=100.00 E-value=4.7e-111 Score=775.92 Aligned_cols=279 Identities=69% Similarity=1.154 Sum_probs=252.1
Q ss_pred Ccccccc-ccccCcccccccccCCCCCCCCCCCCccCCcccccccccccccCCCCceeEEEEeccccccccccccchhhh
Q 022868 1 MAVGLLA-AIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEE 79 (291)
Q Consensus 1 ma~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 79 (291)
||+|||+ |.|++|.+ + ..+..+.|+++..|+|..+.. +. ||++++|||||+||+++.+++++++++++
T Consensus 1 ma~~~~~~~~t~~~l~--~---~~~~~~~~~~~~~f~~~~~~~---~~---~~~~~~~~c~v~~~~~~~~~~~~~~~~~~ 69 (303)
T PLN02601 1 MAAGLSTIAVTLKPLH--R---SDFRLNHPISLAVFPPSLRFN---GF---RRRKILTVCFVVEERKQSSPMENDEKPES 69 (303)
T ss_pred CcccccccccccccCc--c---cCccCCCCcccccCCHHHHhh---hc---ccCCceeEEEEeccccccccccccchhhh
Confidence 8999998 88999844 4 345555555566788864321 11 23567899999999999887877666665
Q ss_pred hhhhhccchHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--------------------hHHHH
Q 022868 80 EESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQME--------------------VGMEF 139 (291)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~~e~~ty~~aa~~ss~g~tsma~~a~y~~f~~~~~--------------------vgMEf 139 (291)
++.+++.+.++|+|||++|||+||+||++||||||+||||||++||||||+|||+ ++|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf 149 (303)
T PLN02601 70 TTSSSEILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEF 149 (303)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhcc
Q 022868 140 WARWAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHD 219 (291)
Q Consensus 140 ~Aw~aHKyIMHG~LW~~H~sHH~p~~G~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHD 219 (291)
||||+|||||||+||.||+|||+|++|+||+||+|||+||+|||+||++|+++.|++|++|||||+|||+|||+||||||
T Consensus 150 ~Aw~aHKYvMHG~LW~lH~sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHD 229 (303)
T PLN02601 150 WARWAHRALWHDSLWNMHESHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHD 229 (303)
T ss_pred HHHHHHHHHHHhcchhhhhhcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred ceecCcccCCcCCCCHHHHHHHHHHHhccCCCCCCcceeeeeechhhhhcCChHHHHHHHHHHhhhccCCC
Q 022868 220 GLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEISKRIKSYNRVP 290 (291)
Q Consensus 220 glVHqRfp~g~~a~~~Ylrri~~AHklHH~~Ke~Gv~FG~ll~P~kye~vgg~~eL~~~~~r~~~~~~~~~ 290 (291)
||||||||+++++||||+|||++|||+||++|++|||||||++|+|||||||.||||||++||+|++++++
T Consensus 230 gLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGfll~P~e~e~vgg~~el~~~~~~~~~~~~~~~ 300 (303)
T PLN02601 230 GLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLGPKEVEEVGGKEELEKEISRRIKLYNKGS 300 (303)
T ss_pred hhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceEEeccHHHHhcCCHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754
No 2
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.42 E-value=3.5e-13 Score=102.97 Aligned_cols=107 Identities=33% Similarity=0.613 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHHH--hhhhhccccCCCCC-CCCCccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHh
Q 022868 134 EVGMEFWARWAHKALWH--ASLWHMHESHHRPR-EGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVF 210 (291)
Q Consensus 134 ~vgMEf~Aw~aHKyIMH--G~LW~~H~sHH~p~-~G~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlY 210 (291)
.+.+|++.|++|| +|| +++|.+|+.||++. ..++.... +..+.++...++..++... ..+.-+..+.+|++++
T Consensus 5 ~l~~d~~~Y~~HR-l~H~~~~l~~~H~~HH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (114)
T PF04116_consen 5 FLLWDFWEYWMHR-LLHKIPFLWRIHKVHHSPKNPTPLSAFR-FHPLEALLLALLPLLLPLL--LLPFHALAFLLGIALF 80 (114)
T ss_pred HHHHHHHHHHHHH-HHhcCchHHHHHHHHhCCcccCchHHHH-cChHHHHHHHHHHHHHHHH--HHhHhHHHHHHHHHHH
Confidence 5789999999999 999 58999999999753 33442222 2223332222222211000 0112245677999999
Q ss_pred hhhhhhhccceecCcccCCcCCCCHHHHHHHHHHHhccC
Q 022868 211 GMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 249 (291)
Q Consensus 211 GiaYffVHDglVHqRfp~g~~a~~~Ylrri~~AHklHH~ 249 (291)
++.|.+.|+++ +.+. .+..+|++...+.|++||+
T Consensus 81 ~~~~~~~H~~~-~~~~----~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 81 YLWYIFIHSGY-HHRF----PPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHhhcCc-cCCC----CCcchhHhcCHHHHHhhCc
Confidence 99999999999 4333 3556899999999999995
No 3
>PLN02434 fatty acid hydroxylase
Probab=98.89 E-value=1.1e-08 Score=93.89 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHh---------hhhhccccCCC-CCCC-CCccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHH
Q 022868 138 EFWARWAHKALWHA---------SLWHMHESHHR-PREG-PFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLG 206 (291)
Q Consensus 138 Ef~Aw~aHKyIMHG---------~LW~~H~sHH~-p~~G-~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlG 206 (291)
=++-|.+||++.|. ....+|..||+ |.+. .+=.==..+++.+.|...++.+-+ .. ....++-.|
T Consensus 95 tl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~-~~----~~a~~~~~G 169 (237)
T PLN02434 95 TLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILCVPFWNLIALFA-TP----ATAPALFGG 169 (237)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCCCCeecCcHHHHHHHHHHHHHHHHHc-ch----hHHHHHHHH
Confidence 45668999999995 24568999996 7763 111111223333333333332211 11 112233345
Q ss_pred HhHhhhhhhhhccceecCcccCCcCCCCHHHHHHHHHHHhccCCCCCCcceee
Q 022868 207 ITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGL 259 (291)
Q Consensus 207 ITlYGiaYffVHDglVHqRfp~g~~a~~~Ylrri~~AHklHH~~Ke~Gv~FG~ 259 (291)
..+.-++|.++|..+ |. .+++++|+|++++-|..||...++. +||.
T Consensus 170 ~l~gYl~Yd~~Hy~l-H~-----~~p~~~~~r~lkr~H~~HHfk~~~~-~fGV 215 (237)
T PLN02434 170 GLLGYVMYDCTHYFL-HH-----GQPSTDVLRNLKKYHLNHHFRDQDK-GFGI 215 (237)
T ss_pred HHHHHHHHHHHHHHH-Hh-----cCcchHHHHHHHHHHHHHcCCCCCC-CCCc
Confidence 555558999999999 63 2566799999999999999865544 6774
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=98.36 E-value=4.1e-06 Score=76.38 Aligned_cols=113 Identities=23% Similarity=0.371 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHh-hhhhccccCCC-CCCC--CCccchhh-hhhhH-HHHHHHHHhhcccCCCchhhHHHHHHHHh
Q 022868 135 VGMEFWARWAHKALWHA-SLWHMHESHHR-PREG--PFELNDVF-AIINA-VPAIALLSFGFFHKGLVPGLCFGAGLGIT 208 (291)
Q Consensus 135 vgMEf~Aw~aHKyIMHG-~LW~~H~sHH~-p~~G--~FE~NDlF-aIifA-vPAIaLi~~G~~~~g~~pgl~fgiGlGIT 208 (291)
+.-+++-||+||..=+. ++|.+|+=||. +..- .=..|+.+ .++++ +-.+.++.+|. . ...+++.++
T Consensus 104 ~~~D~~~Y~~HR~~H~~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~~-----~---~~~~~~~~~ 175 (271)
T COG3000 104 LFLDLGYYWAHRLLHRVPLLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLGL-----S---PVAVALLFI 175 (271)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhcC-----C---HHHHHHHHH
Confidence 67789999999998888 68999999996 3322 22455555 33332 22223333442 2 234667888
Q ss_pred HhhhhhhhhccceecCcccCCcCCCCHHHHHHHHHHHhccCCCCCCcceee
Q 022868 209 VFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGL 259 (291)
Q Consensus 209 lYGiaYffVHDglVHqRfp~g~~a~~~Ylrri~~AHklHH~~Ke~Gv~FG~ 259 (291)
+-++.+++.|+++.+. .+.+.. .|+-...+-|++||+......|||.
T Consensus 176 ~~~~~~~~~H~~~~~~-~~~~~~---~~v~~~p~~H~lHH~~~~~~~Nyg~ 222 (271)
T COG3000 176 FLLFWAVLIHSNLDLP-LPLGWL---RYVFNTPRHHRLHHSKDPYDKNYGV 222 (271)
T ss_pred HHHHHHHHHhcCcccc-CCcccc---eeeecCchHHHHhccCCCCCCcchh
Confidence 8889999999999775 433322 2334556789999985313359993
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=97.54 E-value=0.00011 Score=75.62 Aligned_cols=112 Identities=24% Similarity=0.412 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHh-hhhhccccCCCC-CCCC-------CccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHH
Q 022868 135 VGMEFWARWAHKALWHA-SLWHMHESHHRP-REGP-------FELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGL 205 (291)
Q Consensus 135 vgMEf~Aw~aHKyIMHG-~LW~~H~sHH~p-~~G~-------FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGl 205 (291)
..+|++-||.||..=|. ++|++|+-||.. ...| ||-.=++.+++++|.+.+++.|.. .+ .. +
T Consensus 136 ~~~Df~fYW~HRllH~~~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g~~---hi--~t----~ 206 (620)
T PLN02869 136 GPVEFLYYWLHRALHHHYLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTGTA---SI--AA----F 206 (620)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcccc---hH--HH----H
Confidence 45899999999977666 578999999973 2333 332223455667777666555421 10 00 1
Q ss_pred HHhHhhhhhh-----hhccceecCcccCCc---CCCCHHHHHHHHHHHhccCCCCCCcceeeeee
Q 022868 206 GITVFGMAYM-----FVHDGLVHKRFPVGP---IADVPYFRRVAAAHQLHHSDKFHGVPYGLFLG 262 (291)
Q Consensus 206 GITlYGiaYf-----fVHDglVHqRfp~g~---~a~~~Ylrri~~AHklHH~~Ke~Gv~FG~ll~ 262 (291)
.+.+ .|+ +.|+++= -+|..+ .+-.+|+-.=-.-|.+||+. ++ .|||+++.
T Consensus 207 ~~yl---i~~~f~~~~gHSN~E--l~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd-~NYGlfF~ 264 (620)
T PLN02869 207 FGYI---SYIDFMNNMGHCNFE--LIPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FR-TNYSLFMP 264 (620)
T ss_pred HHHH---HHHHHHhcccccCcc--ccccchhccCCcchheecCchHHhHHhcc-CC-cCcccchH
Confidence 1111 222 3455541 112211 12223333345789999985 44 49998743
No 6
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=89.38 E-value=1.9 Score=40.61 Aligned_cols=98 Identities=28% Similarity=0.470 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhh-----hh------hccccCCC-CCCC-CCccchhhhhhhHHHHHHHHHhhcccCCCchhhH--H-H
Q 022868 139 FWARWAHKALWHAS-----LW------HMHESHHR-PREG-PFELNDVFAIINAVPAIALLSFGFFHKGLVPGLC--F-G 202 (291)
Q Consensus 139 f~Aw~aHKyIMHG~-----LW------~~H~sHH~-p~~G-~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~--f-g 202 (291)
++-|..||++.|=- -| -+|--||. |-+| .+----+-+.|.+.|--.++.+=+- .+..| | |
T Consensus 96 l~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~~vl~----~~~~~a~faG 171 (240)
T KOG0539|consen 96 LIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRLVFPPTPFAILAAPFYLILSLVLP----HPVAPAGFAG 171 (240)
T ss_pred HHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceEecCCchHHHHHHHHHHHHHHhcC----cchhhhhhcc
Confidence 44566777776631 23 36888996 7776 2222222234444444433332221 11111 1 1
Q ss_pred HHHHHhHhhhhhhhhccceecCcccCCcCCCCHHHHHHHHHHHhccC
Q 022868 203 AGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 249 (291)
Q Consensus 203 iGlGITlYGiaYffVHDglVHqRfp~g~~a~~~Ylrri~~AHklHH~ 249 (291)
+=+|-.+|-|.=.+.| .+..++.+|++.+++-|.=||.
T Consensus 172 ~l~GYV~YDmtHYyLH---------hg~p~~~~~~~~lK~yHl~HHf 209 (240)
T KOG0539|consen 172 GLLGYVCYDMTHYYLH---------HGSPPKRPYLKHLKKYHLNHHF 209 (240)
T ss_pred chhhhhhhhhhhhhhh---------cCCCCCchHHHHHHHHHhhhhh
Confidence 2245555555544443 3444577999999999999996
No 7
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=85.77 E-value=1.2 Score=42.43 Aligned_cols=27 Identities=33% Similarity=0.834 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHh--hhh-hccccCCC
Q 022868 135 VGMEFWARWAHKALWHA--SLW-HMHESHHR 162 (291)
Q Consensus 135 vgMEf~Aw~aHKyIMHG--~LW-~~H~sHH~ 162 (291)
+...-|-|+.|||. |= +|. ++|..||+
T Consensus 131 lviDtWQYF~HRym-H~NK~LYk~iHs~HHr 160 (287)
T KOG0874|consen 131 LVIDTWQYFLHRYM-HMNKFLYKHIHSQHHR 160 (287)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHHhhcee
Confidence 34466889999984 54 788 78888886
No 8
>PLN02220 delta-9 acyl-lipid desaturase
Probab=78.99 E-value=7.9 Score=37.19 Aligned_cols=18 Identities=28% Similarity=-0.003 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 022868 135 VGMEFWARWAHKALWHAS 152 (291)
Q Consensus 135 vgMEf~Aw~aHKyIMHG~ 152 (291)
+.|=++.-..||+.-|.+
T Consensus 67 it~lGiT~GyHRl~sHrs 84 (299)
T PLN02220 67 VTGLSITFSYHRNLAHRS 84 (299)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 455566778899999985
No 9
>PLN02434 fatty acid hydroxylase
Probab=71.49 E-value=14 Score=34.68 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=49.4
Q ss_pred ccccCCCCCCCCCccchhhh-----------hhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhccceecC
Q 022868 156 MHESHHRPREGPFELNDVFA-----------IINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHK 224 (291)
Q Consensus 156 ~H~sHH~p~~G~FE~NDlFa-----------IifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHq 224 (291)
+|+--|.+..-++=-||+.- ++...+.+.+++.|+.............-+|+.++-++=-.+|--+-|-
T Consensus 29 vh~p~~~~~~~rlF~~~~lE~lsrt~w~vvp~iw~pvv~~~~~~~~~~~~~~~~~~~~~~~G~~~wtl~EY~lHRflfH~ 108 (237)
T PLN02434 29 VHQPIVSKEGPRFFESDVLEFLTRTVWWAVPLIWLPVVCWCLVKSVRMGLPLSAVVLMVAFGVFIWTLLEYILHRFLFHI 108 (237)
T ss_pred hcCCccCCCCCCCCCcHHHHHhcCCchhhhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555554333444455541 2233333355555553221111111223367777777767778877774
Q ss_pred cccCCcCCCCHHH-HHHHHHHHhccCCCCCC
Q 022868 225 RFPVGPIADVPYF-RRVAAAHQLHHSDKFHG 254 (291)
Q Consensus 225 Rfp~g~~a~~~Yl-rri~~AHklHH~~Ke~G 254 (291)
+ +++++. +-....|..||....|.
T Consensus 109 ~------p~~~~~~~~hfllHg~HH~~P~D~ 133 (237)
T PLN02434 109 K------TKSYWGNTAHYLLHGCHHKHPMDG 133 (237)
T ss_pred C------CcchHHHHHHHHHHHHhhcCCCCC
Confidence 3 455655 44567899999865553
No 10
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=69.64 E-value=24 Score=31.36 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 022868 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWW 131 (291)
Q Consensus 91 ~~~~~~~r~~~e~~ty~~aa~~ss~g~tsma~~a~y~~f~~ 131 (291)
-|++|+.|+ |+-++||-....+++..-|+|
T Consensus 56 ~Vs~RM~rR-----------m~~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 56 VVSNRMLRR-----------MAVFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred HHHHHHHHH-----------HHHHhchHHHHHHHHHHHHHH
Confidence 566676664 344556655544444444444
No 11
>PLN02598 omega-6 fatty acid desaturase
Probab=61.75 E-value=26 Score=35.17 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=14.0
Q ss_pred HHHhHhhhhhhhhccceecCcc
Q 022868 205 LGITVFGMAYMFVHDGLVHKRF 226 (291)
Q Consensus 205 lGITlYGiaYffVHDglVHqRf 226 (291)
+|+.+-| .+.+.||.. |+.|
T Consensus 132 ~G~~~~~-l~vl~Hec~-H~s~ 151 (421)
T PLN02598 132 LGTAITG-FFVIGHDCG-HNSF 151 (421)
T ss_pred HHHHHHH-HHHHHHhcc-ccCC
Confidence 4444434 488999998 8776
No 12
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=60.42 E-value=58 Score=27.09 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHHHhhhhhhHHHH
Q 022868 98 RKRSERFTYLVAAVMSSFGITSMAV 122 (291)
Q Consensus 98 r~~~e~~ty~~aa~~ss~g~tsma~ 122 (291)
||+.+|..+.--+.+|++|+.-.+.
T Consensus 31 ~r~~~~~~~~~l~~~g~IG~~~v~p 55 (100)
T TIGR02230 31 RKNATRSIWEGLGMFGLIGWSVAIP 55 (100)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3335778888889999999764443
No 13
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=59.84 E-value=25 Score=27.23 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=16.1
Q ss_pred HHHHHHH-HhhhhhhhHHHHHHHH
Q 022868 90 ARVAEKL-ARKRSERFTYLVAAVM 112 (291)
Q Consensus 90 ~~~~~~~-~r~~~e~~ty~~aa~~ 112 (291)
.|+-++. ++|+..|.+++..++.
T Consensus 16 ~RvGr~q~~~r~RrRrc~~~v~~v 39 (60)
T PF06072_consen 16 RRVGRQQHASRRRRRRCRLAVAIV 39 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5787777 6777788888655443
No 14
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=59.52 E-value=12 Score=36.62 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHh-hhhhccccCCC
Q 022868 135 VGMEFWARWAHKALWHA-SLWHMHESHHR 162 (291)
Q Consensus 135 vgMEf~Aw~aHKyIMHG-~LW~~H~sHH~ 162 (291)
+.-||.-||+||.+=|- +-|++|+-||.
T Consensus 137 fF~Df~iYw~HR~lH~~~vy~~LH~~HH~ 165 (312)
T KOG0872|consen 137 FFTDFGIYWAHRELHHRGVYKRLHKPHHI 165 (312)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhcchhhh
Confidence 67799999999999887 67999999995
No 15
>PLN02505 omega-6 fatty acid desaturase
Probab=58.88 E-value=13 Score=36.68 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred CccchhhhhhhHHHHHHHHHhhcccCC-------------CchhhHHHHHHHHhHhhhhhhhhccceecCcccCCcCCCC
Q 022868 168 FELNDVFAIINAVPAIALLSFGFFHKG-------------LVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADV 234 (291)
Q Consensus 168 FE~NDlFaIifAvPAIaLi~~G~~~~g-------------~~pgl~fgiGlGITlYGiaYffVHDglVHqRfp~g~~a~~ 234 (291)
||+|+.=++..-+-.++++...+.-.- ++|..++..|..++. ++.+.||.- |+.+--.+..|+
T Consensus 45 f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~---l~vl~HDcg-H~s~~~~~~lN~ 120 (381)
T PLN02505 45 FKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTG---VWVIAHECG-HHAFSDYQWLDD 120 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH---HHHHHHhhc-chhhhCChHHHH
Q ss_pred HHHHHH-----------HHHHHhccC----CCCCCcceeeeeechhhhhcCChHHH
Q 022868 235 PYFRRV-----------AAAHQLHHS----DKFHGVPYGLFLGPKELEEVGGLEEL 275 (291)
Q Consensus 235 ~Ylrri-----------~~AHklHH~----~Ke~Gv~FG~ll~P~kye~vgg~~eL 275 (291)
---.-+ +.-|..||. ...|.+ ++|+++++.....++
T Consensus 121 ~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~-----~~P~~~~~~~~~~~~ 171 (381)
T PLN02505 121 TVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEV-----FVPKKKSALPWYSKY 171 (381)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCcc-----ccCcCHHHHhHHHHH
No 16
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=55.02 E-value=1.2e+02 Score=26.18 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHhHhhhhhhhh
Q 022868 201 FGAGLGITVFGMAYMFV 217 (291)
Q Consensus 201 fgiGlGITlYGiaYffV 217 (291)
..+|+|+.+.++.+.+.
T Consensus 145 ~~~glGlll~~~~~~l~ 161 (181)
T PF08006_consen 145 GLFGLGLLLIVITFYLT 161 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33567777766665544
No 17
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=50.09 E-value=18 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=24.3
Q ss_pred hhhhhhccceecCcccCCcCCCCHHH------------HHHHHHHHhccC
Q 022868 212 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQLHHS 249 (291)
Q Consensus 212 iaYffVHDglVHqRfp~g~~a~~~Yl------------rri~~AHklHH~ 249 (291)
....+.||. +|+++...+ .-|.++ ...+..|..||.
T Consensus 14 ~~~~~~H~~-~H~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~ 61 (122)
T cd01060 14 GLTVLAHEL-GHRSFFRSR-WLNRLLGALLGLALGGSYGWWRRSHRRHHR 61 (122)
T ss_pred HHHHHHHHH-hhhhhhccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 467789999 799985432 223343 344678999996
No 18
>PLN02220 delta-9 acyl-lipid desaturase
Probab=48.86 E-value=39 Score=32.56 Aligned_cols=36 Identities=31% Similarity=0.606 Sum_probs=24.1
Q ss_pred HHHHHhHhhhhhhhhccceecCcccCCcCCCCHHHHHH----------------HHHHHhccC
Q 022868 203 AGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRV----------------AAAHQLHHS 249 (291)
Q Consensus 203 iGlGITlYGiaYffVHDglVHqRfp~g~~a~~~Ylrri----------------~~AHklHH~ 249 (291)
.|+|||+ ..|=.+.|+=|+.. +.++.+ .+.|++||.
T Consensus 68 t~lGiT~------GyHRl~sHrsfka~-----~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~ 119 (299)
T PLN02220 68 TGLSITF------SYHRNLAHRSFKLP-----KWLEYPFAYSALFALQGDPIDWVSTHRFHHQ 119 (299)
T ss_pred HHHHHHH------HHHHHHHhhcCcCc-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4667776 46888888777643 233333 388999995
No 19
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=46.48 E-value=24 Score=33.41 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCCCccchhhhhhhHHHHHHHHHhhc--ccCCCchhhHHHHHHHHhHhhhhhhhhccceecCcccCCcCCC---------
Q 022868 165 EGPFELNDVFAIINAVPAIALLSFGF--FHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIAD--------- 233 (291)
Q Consensus 165 ~G~FE~NDlFaIifAvPAIaLi~~G~--~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHqRfp~g~~a~--------- 233 (291)
++-|+.|..+..+-.....+.++.+. ...+++..++.++-+|.++.-..+.+.||.. |..+--.+..|
T Consensus 9 ~~L~~~~~~~~~~~~~~v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~-H~~~f~~~~~N~~~g~~~~~ 87 (289)
T cd03508 9 KKLFGPDPLTKWVVLGVVLLQIITAYLLRDSSWWKILLVAYFFGGTINHSLFLAIHEIS-HNLAFGKPLWNRLFGIFANL 87 (289)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhhcCChHHHHHHHHHHHH
Confidence 44566666664322222222222221 1122332334455566666666778889998 87763221111
Q ss_pred ---CHHHHHHHHHHHhccC
Q 022868 234 ---VPYFRRVAAAHQLHHS 249 (291)
Q Consensus 234 ---~~Ylrri~~AHklHH~ 249 (291)
.||.-.-+.-|..||.
T Consensus 88 ~~g~p~~~~~r~~H~~HH~ 106 (289)
T cd03508 88 PIGVPYSISFKKYHLEHHR 106 (289)
T ss_pred HhcCChhhHHHHHHHHhcc
Confidence 1232234678999996
No 20
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=45.37 E-value=1.1e+02 Score=31.83 Aligned_cols=130 Identities=22% Similarity=0.320 Sum_probs=77.8
Q ss_pred ccchHHHHHHHHHhh----------hhhhhHHHHHHHHhhhhhhHHHHHH------HHHHHHHhhhhHHHHHHHHHHHHH
Q 022868 85 QISTAARVAEKLARK----------RSERFTYLVAAVMSSFGITSMAVMA------VYYRFWWQMEVGMEFWARWAHKAL 148 (291)
Q Consensus 85 ~~~~~~~~~~~~~r~----------~~e~~ty~~aa~~ss~g~tsma~~a------~y~~f~~~~~vgMEf~Aw~aHKyI 148 (291)
.+.++.|+-.-.+|. ..++.|=..|-+.+.++.+-|...- +|.-|.-+...+-+
T Consensus 305 ~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~---------- 374 (479)
T KOG1287|consen 305 VIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLS---------- 374 (479)
T ss_pred HHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------
Confidence 344455655444443 3456677777777766665555543 33333332333333
Q ss_pred HHhhhh--hccccCCCCCCCCCccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhccceecCcc
Q 022868 149 WHASLW--HMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRF 226 (291)
Q Consensus 149 MHG~LW--~~H~sHH~p~~G~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHqRf 226 (291)
|=|++| +=|.++++ |+..+-.+-++|-+..+.|+.+.+...- +.- .++|++|++-|+.+.+ .++|.+-
T Consensus 375 ~~gll~lR~k~p~~~r----PiKvpl~~p~~~~~~~i~lvvip~~~~~--~~~-~~ig~~i~l~G~~~Y~---~~i~~~~ 444 (479)
T KOG1287|consen 375 MAGLLWLRWKHPPLPR----PIKVPLFIPILFLLICIFLVVIPIISDF--PVE-TLIGIGIILSGVPFYF---LFIHWKK 444 (479)
T ss_pred HHHHHHHHhhCCCCCC----CEeeeeehHHHHHHHHHHHhheeeeecC--Ccc-chhHHHHHHHhhhhhe---EEEEecC
Confidence 345566 33555444 4558889999999999999999875431 111 4588999999988655 3566322
Q ss_pred cCCcCCCCHHHHHH
Q 022868 227 PVGPIADVPYFRRV 240 (291)
Q Consensus 227 p~g~~a~~~Ylrri 240 (291)
+.++++++
T Consensus 445 ------~p~~~~~~ 452 (479)
T KOG1287|consen 445 ------KPKWLRKI 452 (479)
T ss_pred ------CcHHHHHh
Confidence 33566665
No 21
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=43.76 E-value=36 Score=34.29 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHHhHhhhhhhhhccceecCcc
Q 022868 195 LVPGLCFGAGLGITVFGMAYMFVHDGLVHKRF 226 (291)
Q Consensus 195 ~~pgl~fgiGlGITlYGiaYffVHDglVHqRf 226 (291)
.+..++.++-+|+....+. ++.||.. |.-+
T Consensus 158 ~~~~~l~aillg~~~~~~g-~l~HDa~-H~~~ 187 (485)
T PLN03199 158 FAMHIASALLLGLFFQQCG-WLAHDFL-HHQV 187 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhh-hhhh
Confidence 3444556677888888887 6999998 8554
No 22
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=39.46 E-value=32 Score=33.45 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHhhhh-hccccCCC
Q 022868 116 GITSMAVMAVYYRFWWQME---VGMEFWARWAHKALWHASLW-HMHESHHR 162 (291)
Q Consensus 116 g~tsma~~a~y~~f~~~~~---vgMEf~Aw~aHKyIMHG~LW-~~H~sHH~ 162 (291)
|+.+-+-+-..+.+++|.. +.-|++=+|+||-.=|+++- .+|+-||+
T Consensus 107 ~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~~~~Yk~iHKvHHe 157 (283)
T KOG0873|consen 107 GLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHHKWLYKYIHKVHHE 157 (283)
T ss_pred CCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhhhc
Confidence 3333333444555666654 55679999999999888888 67777776
No 23
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=37.71 E-value=69 Score=29.23 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=22.2
Q ss_pred hhhhhhccceecCcccCCcCCCCHHH------------HHHHHHHHhccC
Q 022868 212 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQLHHS 249 (291)
Q Consensus 212 iaYffVHDglVHqRfp~g~~a~~~Yl------------rri~~AHklHH~ 249 (291)
..+.+.||.. |+.+--.+.- |.-+ ..-+..|..||.
T Consensus 57 ~~~~~~He~~-H~~~~~~~~~-N~~~g~l~~~~~~~~~~~~~~~H~~HH~ 104 (285)
T cd03511 57 ALFARWHECV-HGTAFATRWL-NDAVGQIAGLMILLPPDFFRWSHARHHR 104 (285)
T ss_pred HHHHHHHHhh-cccccCCchH-HHHHHHHHHHHhcCChHHHHHHHHHHhc
Confidence 4578899999 9876322211 1111 233778999995
No 24
>COG5547 Small integral membrane protein [Function unknown]
Probab=36.22 E-value=32 Score=26.82 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHhhcc
Q 022868 175 AIINAVPAIALLSFGFF 191 (291)
Q Consensus 175 aIifAvPAIaLi~~G~~ 191 (291)
.+++++.|+.++.+||+
T Consensus 14 glvglliAili~t~Gfw 30 (62)
T COG5547 14 GLVGLLIAILILTFGFW 30 (62)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67889999999999985
No 25
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=36.00 E-value=3.2e+02 Score=24.37 Aligned_cols=104 Identities=27% Similarity=0.316 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhhhHH----H--HHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCccchh
Q 022868 105 TYLVAAVMSSFGITSM----A--VMAVYYRFWWQME-----VGMEFWARWAHKALWHASLWHMHESHHRPREGPFELNDV 173 (291)
Q Consensus 105 ty~~aa~~ss~g~tsm----a--~~a~y~~f~~~~~-----vgMEf~Aw~aHKyIMHG~LW~~H~sHH~p~~G~FE~NDl 173 (291)
+-.+.+|+|++|-.+- | -.|+=+-|+-|-| ...-.+|..+ -+.-+..|.-|+.+|+.--|
T Consensus 11 ~G~lGsvVsamgCA~CFPAlASLGAAIGLGFLsq~EGLFi~~LlPlFA~iA--LlanalgW~sHRQW~Rs~lG------- 81 (139)
T PRK13755 11 TGALGSVVSAMGCAACFPALASLGAAIGLGFLSQYEGLFISTLLPLFAAIA--LLANALGWFSHRQWLRSALG------- 81 (139)
T ss_pred cccHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-------
Confidence 3456777777774321 1 1455566766665 1111122221 22334456555555554333
Q ss_pred hhhhhHHHHHHHHH-hhcccCCCchhhHHHHHHHHhHhhhhhhhhccce--ecCcc
Q 022868 174 FAIINAVPAIALLS-FGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGL--VHKRF 226 (291)
Q Consensus 174 FaIifAvPAIaLi~-~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDgl--VHqRf 226 (291)
-..|+++|.. +++. .++|....+.+||.+.+ |+. +.|.+ .|+|=
T Consensus 82 ----~iGP~lvl~~~~~~~-~~~ws~~l~Y~gLalMv-~vs---iWD~vsPa~rrC 128 (139)
T PRK13755 82 ----MIGPALVLAAVFLLL-GNGWSANLLYVGLALMV-GVS---IWDFVSPAHRRC 128 (139)
T ss_pred ----chhHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH-HHH---HHHhcCccccCC
Confidence 2356766653 3332 23455555666666544 332 56766 45553
No 26
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=35.56 E-value=1e+02 Score=27.13 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 022868 93 AEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEVGMEFWARWA 144 (291)
Q Consensus 93 ~~~~~r~~~e~~ty~~aa~~ss~g~tsma~~a~y~~f~~~~~vgMEf~Aw~a 144 (291)
..+.|+|+..|..+...|.|+ +=+..-.-.+|.-++| =.||-++|++
T Consensus 83 id~~A~~~~~~~~w~gl~~l~--~q~~~l~rLTf~e~sW---DvMEPVTYfv 129 (180)
T PF04678_consen 83 IDEKAEKRARRLLWGGLALLV--VQFGILARLTFWEYSW---DVMEPVTYFV 129 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcccc---chhhhHHHHH
Confidence 345555666666666555554 2222222334445555 3699999876
No 27
>PF15018 InaF-motif: TRP-interacting helix
Probab=33.14 E-value=32 Score=24.43 Aligned_cols=9 Identities=44% Similarity=1.663 Sum_probs=8.5
Q ss_pred HHHHHHHHH
Q 022868 123 MAVYYRFWW 131 (291)
Q Consensus 123 ~a~y~~f~~ 131 (291)
+++||.|.|
T Consensus 24 LsiYY~f~W 32 (38)
T PF15018_consen 24 LSIYYIFFW 32 (38)
T ss_pred HHHHHheee
Confidence 899999999
No 28
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.85 E-value=55 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=33.5
Q ss_pred ccchh------hhhhhHHHHHHHHHhhcccCCCch------hhHHHHHHHHhHhhhhhhhhc
Q 022868 169 ELNDV------FAIINAVPAIALLSFGFFHKGLVP------GLCFGAGLGITVFGMAYMFVH 218 (291)
Q Consensus 169 E~NDl------FaIifAvPAIaLi~~G~~~~g~~p------gl~fgiGlGITlYGiaYffVH 218 (291)
+.|++ .+++|+.|++.-=+||..-+ ..| |.++..|+.+.+-++.|.++.
T Consensus 257 ~~N~imk~LTi~s~iflPpTlIagiyGMNf~-~mPel~~~~Gy~~~l~~m~~~~~~~~~~fr 317 (322)
T COG0598 257 NQNEIMKILTIVSTIFLPPTLITGFYGMNFK-GMPELDWPYGYPIALILMLLLALLLYLYFR 317 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHcccccCCC-CCcCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46764 47888888888888887433 233 445666777777777777663
No 29
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=30.26 E-value=1.1e+02 Score=23.32 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred hhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhh
Q 022868 173 VFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMF 216 (291)
Q Consensus 173 lFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYff 216 (291)
+.+++..+|.++.+ .|. +. .-.+..++|++++.++|=+
T Consensus 15 ~~~l~~~~P~~a~~-~~~---~~--~~a~~l~v~~s~~a~~wn~ 52 (67)
T PF05232_consen 15 VGALLISVPLIAWW-LGI---SL--WQAGALDVGLSLFAMVWNY 52 (67)
T ss_pred HHHHHHHHHHHHHH-HCC---CH--HHHHHHHHHHHHHHHHHHH
Confidence 45777788887776 442 12 2234555666655555543
No 30
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=29.36 E-value=4.4e+02 Score=24.01 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=13.7
Q ss_pred CCCCccchhh--hhhhHHHHHHH
Q 022868 165 EGPFELNDVF--AIINAVPAIAL 185 (291)
Q Consensus 165 ~G~FE~NDlF--aIifAvPAIaL 185 (291)
+.|||+.... +++|++..++-
T Consensus 120 ~nP~~L~~Al~Fa~l~~~i~~~~ 142 (211)
T PF13194_consen 120 SNPFELKSALKFALLFAVILLLS 142 (211)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHH
Confidence 5688888754 66666655543
No 31
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=27.85 E-value=97 Score=26.88 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhccceecCcccCCcCCCCHHHHHHH------------
Q 022868 174 FAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVA------------ 241 (291)
Q Consensus 174 FaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHqRfp~g~~a~~~Ylrri~------------ 241 (291)
+++|.+..++++..-+ ++..+...+-+|....|+ ..+.||.. |+.+ ...+.-|..+-.+.
T Consensus 2 w~~i~~~~~~~~~~~~-----~~~~~l~~~~~g~~~~~l-~~l~Hea~-H~~l-~~~~~~N~~~g~~~~~~p~~~~~~~~ 73 (175)
T cd03510 2 WLVIAAAVALALAWPN-----WLAYLLAVLLIGARQRAL-AILMHDAA-HGLL-FRNRRLNDFLGNWLAAVPIFQSLAAY 73 (175)
T ss_pred hHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHH-HHHHHHHH-Hhcc-cccccHHHHHHHHHHHhhhhCCHHHH
Q ss_pred -HHHHhccC
Q 022868 242 -AAHQLHHS 249 (291)
Q Consensus 242 -~AHklHH~ 249 (291)
..|..||.
T Consensus 74 r~~H~~HH~ 82 (175)
T cd03510 74 RRSHLKHHR 82 (175)
T ss_pred HHHHHHHhC
No 32
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.22 E-value=54 Score=25.58 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=23.8
Q ss_pred cchhhhhhhHHHHHHHHHhhcccCCCchh-hHHHHHHHHhH
Q 022868 170 LNDVFAIINAVPAIALLSFGFFHKGLVPG-LCFGAGLGITV 209 (291)
Q Consensus 170 ~NDlFaIifAvPAIaLi~~G~~~~g~~pg-l~fgiGlGITl 209 (291)
.++++-++..+-++.-+.+|+......-. .++++|+.+|+
T Consensus 9 ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~ 49 (76)
T PF06645_consen 9 AEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777788888755433211 13445555554
No 33
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=25.75 E-value=4e+02 Score=22.37 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=37.2
Q ss_pred cchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhccceecCccc
Q 022868 170 LNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFP 227 (291)
Q Consensus 170 ~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHqRfp 227 (291)
+|.+-.++..+=++.|...+.++..-.+..=......-.+.+++|++++.++..+.-+
T Consensus 90 l~~~~~~~g~~~~~gl~~~a~~~~~~~~~~H~~~a~~ff~~~~i~~~~~~~~~~~~~~ 147 (215)
T PF10277_consen 90 LNILSLVFGLLSAIGLILLAIFQSTEHPTVHYIGAVLFFVSSFIYMLLQTILSYRLGP 147 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777777777777888888876643333332111233455678999999999554433
No 34
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=24.96 E-value=65 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHHhhc
Q 022868 173 VFAIINAVPAIALLSFGF 190 (291)
Q Consensus 173 lFaIifAvPAIaLi~~G~ 190 (291)
+|+|+.++.+.+++..++
T Consensus 47 ~FcI~tvlfsFvfLs~kl 64 (90)
T PF11674_consen 47 FFCIFTVLFSFVFLSLKL 64 (90)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 356666777777777764
No 35
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.52 E-value=4.1e+02 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=17.8
Q ss_pred HHHHHHHHhHhhhhhhhhccce
Q 022868 200 CFGAGLGITVFGMAYMFVHDGL 221 (291)
Q Consensus 200 ~fgiGlGITlYGiaYffVHDgl 221 (291)
..-+|+.+.+.|++|.++|=.-
T Consensus 88 ~~i~g~~~~~~G~~~i~l~~~~ 109 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYIILGFFC 109 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3457899999999999998554
No 36
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=24.00 E-value=73 Score=24.50 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCCchhh-HHHHHHHHhHhhhhhhhhcc
Q 022868 193 KGLVPGL-CFGAGLGITVFGMAYMFVHD 219 (291)
Q Consensus 193 ~g~~pgl-~fgiGlGITlYGiaYffVHD 219 (291)
+.++|.+ |.|+|+|+.+|-+++-++.+
T Consensus 4 pel~PL~~~vg~a~~~a~~~~~r~l~~~ 31 (73)
T PF06522_consen 4 PELYPLFVIVGVAVGGATFYLYRLLLTN 31 (73)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555 57888888888888866554
No 37
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=23.40 E-value=74 Score=26.21 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhc
Q 022868 175 AIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVH 218 (291)
Q Consensus 175 aIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVH 218 (291)
++++.+|.++++..-+....+.+.-.+.+..|+...++.|.+++
T Consensus 72 ~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~ 115 (135)
T PF04246_consen 72 FLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILR 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788898888743321110111122334455555555555543
No 38
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=23.24 E-value=2.4e+02 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHhccCCCCCCcceeeeeechhh--hhcCChHHHHHHHHHHhhh
Q 022868 241 AAAHQLHHSDKFHGVPYGLFLGPKEL--EEVGGLEELEKEISKRIKS 285 (291)
Q Consensus 241 ~~AHklHH~~Ke~Gv~FG~ll~P~ky--e~vgg~~eL~~~~~r~~~~ 285 (291)
++.|++||....+. +|-+.-|=-.+ ++.+=-+.||+-|......
T Consensus 127 r~~H~~HH~aPh~~-~YCI~tGw~N~~Ld~~~f~~~lE~~i~~~tG~ 172 (178)
T PF10520_consen 127 RKHHRIHHVAPHDT-NYCITTGWLNPPLDKIRFWRRLERVITFLTGV 172 (178)
T ss_pred chhhhccccCcccC-CeEeecccchHHHHHhhHHHHHHHHHHHHhCC
Confidence 46799999877766 88777654443 6677778888888766554
No 39
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.77 E-value=82 Score=27.03 Aligned_cols=25 Identities=24% Similarity=0.467 Sum_probs=17.1
Q ss_pred HHHHHHhhcccCCCchhhHHHHHHHHhHhhhh
Q 022868 182 AIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 213 (291)
Q Consensus 182 AIaLi~~G~~~~g~~pgl~fgiGlGITlYGia 213 (291)
.|+++.+||. +.+.+||.|.+|.|-
T Consensus 11 ~Ia~mVlGFi-------~fWPlGla~Lay~iw 35 (115)
T PF11014_consen 11 WIAAMVLGFI-------VFWPLGLALLAYMIW 35 (115)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 5788888873 345578888776554
No 40
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=22.03 E-value=1e+02 Score=27.02 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=29.8
Q ss_pred hhccccCCCCCCCCCccchhh-hhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhh
Q 022868 154 WHMHESHHRPREGPFELNDVF-AIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYM 215 (291)
Q Consensus 154 W~~H~sHH~p~~G~FE~NDlF-aIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYf 215 (291)
|--..|++..+...|+.-+.| -|--++-||.++.-- . +.+++|+|+.+.|++++
T Consensus 99 ~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~Lt~~-----~---~l~~~~~~~g~~G~~~~ 153 (157)
T PF14235_consen 99 AEAESDHALHHHHRFDLAVALLQIAIVLASITALTKK-----K---WLWYASLGLGAVGVAFF 153 (157)
T ss_pred HHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHh-----H---HHHHHHHHHHHHHHHHH
Confidence 445556666667678777777 444444555555321 1 12345566666666554
No 41
>COG4682 Predicted membrane protein [Function unknown]
Probab=21.81 E-value=68 Score=28.12 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCCCccchhh---hhhhHHHHHHHHHhhcccCCCchh--hHHHHHHHHhHhhh
Q 022868 164 REGPFELNDVF---AIINAVPAIALLSFGFFHKGLVPG--LCFGAGLGITVFGM 212 (291)
Q Consensus 164 ~~G~FE~NDlF---aIifAvPAIaLi~~G~~~~g~~pg--l~fgiGlGITlYGi 212 (291)
+-+-.+.|..| .-.-++.+|.|+..|..+.-+... ..+++++++++||-
T Consensus 65 k~e~~~i~~~~~~~C~~~~lisigll~vGv~Na~la~sek~~y~vaffv~lfGa 118 (128)
T COG4682 65 KLEDIPITSIYYHRCQLVALISIGLLFVGVWNATLALSEKGFYGVAFFVSLFGA 118 (128)
T ss_pred hccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH
Confidence 33334455555 556678999999999865311100 02567777777774
No 42
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.17 E-value=77 Score=27.82 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=21.1
Q ss_pred CCCccchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhh
Q 022868 166 GPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 213 (291)
Q Consensus 166 G~FE~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGia 213 (291)
|.|...-..-+.-| .+++++.+|+-. |+ ..+.+|++++++++.
T Consensus 82 GfFsP~SwWPl~la-~~~al~~lGla~-g~---Wl~~iG~~~~i~~~~ 124 (137)
T PF12270_consen 82 GFFSPHSWWPLVLA-AAAALVFLGLAF-GW---WLILIGAVLLIVAVV 124 (137)
T ss_pred CcCCCccHhHHHHH-HHHHHHHHHHHH-HH---HHHHHHHHHHHHHHH
Confidence 44555555544443 355556666521 11 234566666655543
No 43
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=20.52 E-value=65 Score=24.37 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.1
Q ss_pred HHHHHHHH---HhhhhhhhHHHHHHHHhhhhhh
Q 022868 89 AARVAEKL---ARKRSERFTYLVAAVMSSFGIT 118 (291)
Q Consensus 89 ~~~~~~~~---~r~~~e~~ty~~aa~~ss~g~t 118 (291)
...+|+++ .-|-..|+-|=++-|+.|+|+.
T Consensus 27 l~~ia~~l~~~~~k~~~RRlYDI~NVLealgli 59 (71)
T PF02319_consen 27 LNEIADKLISENVKTQRRRLYDIINVLEALGLI 59 (71)
T ss_dssp HHHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSE
T ss_pred HHHHHHHHcccccccccchhhHHHHHHHHhCce
Confidence 35677777 5555778899999999999985
No 44
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=20.35 E-value=1.3e+02 Score=29.94 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=26.1
Q ss_pred HHHHHhHhhhhhhhhccceecCcccCCcCCCCHHHH-------------HHHHHHHhccC
Q 022868 203 AGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFR-------------RVAAAHQLHHS 249 (291)
Q Consensus 203 iGlGITlYGiaYffVHDglVHqRfp~g~~a~~~Ylr-------------ri~~AHklHH~ 249 (291)
.|||||+ . .|--.-||=||.. ++ .+|+- .-.+.|+.||.
T Consensus 79 ~glgITa---g---~HRlwsHRSyKa~-kp-Lr~fla~~~~~A~Qg~~~~WvrdHR~HHk 130 (321)
T KOG1600|consen 79 GGLGITA---G---YHRLWSHRSYKAP-KP-LRYFLAYCNTLAFQGDIIDWVRDHRVHHK 130 (321)
T ss_pred hhceeee---e---hhhhcccccccCC-cc-HHHHHHHHHHHhccCChhHHHhhhhhhcc
Confidence 5889987 3 6888888777643 22 23432 34689999995
Done!