Query 022868
Match_columns 291
No_of_seqs 147 out of 211
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 12:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 47.4 20 0.00068 32.3 4.6 18 201-218 67-84 (256)
2 3h90_A Ferrous-iron efflux pum 41.0 23 0.0008 30.8 3.9 66 170-242 148-213 (283)
3 3j1z_P YIIP, cation efflux fam 40.5 29 0.00098 30.9 4.5 66 170-242 157-222 (306)
4 2ki0_A DS119; beta-alpha-beta, 19.4 69 0.0024 21.4 2.3 16 269-284 10-26 (36)
5 1q90_R Cytochrome B6-F complex 17.9 1.7E+02 0.0059 20.5 4.2 29 102-130 10-38 (49)
6 2kdr_X NS4B, P27, non-structur 14.5 86 0.0029 20.3 1.8 15 107-121 6-20 (28)
7 4ev6_A Magnesium transport pro 13.6 1.9E+02 0.0064 25.9 4.4 18 174-191 285-302 (339)
8 3mp7_B Preprotein translocase 9.6 3.4E+02 0.012 19.6 3.9 32 99-130 23-54 (61)
9 2qjy_B Cytochrome C1; cytochro 9.6 2.9E+02 0.0098 25.4 4.3 17 115-131 229-245 (269)
10 2iub_A CORA, divalent cation t 8.8 1.6E+02 0.0053 26.7 2.2 16 175-190 310-325 (363)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=47.40 E-value=20 Score=32.26 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=10.8
Q ss_pred HHHHHHHhHhhhhhhhhc
Q 022868 201 FGAGLGITVFGMAYMFVH 218 (291)
Q Consensus 201 fgiGlGITlYGiaYffVH 218 (291)
..+|.|+++.-++|.+-|
T Consensus 67 iala~Glav~~~i~~~g~ 84 (256)
T 3llq_A 67 VALAFGLTVLTMAYAVGG 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeec
Confidence 334555555557787765
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=40.97 E-value=23 Score=30.78 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=30.6
Q ss_pred cchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhccceecCcccCCcCCCCHHHHHHHH
Q 022868 170 LNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAA 242 (291)
Q Consensus 170 ~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHqRfp~g~~a~~~Ylrri~~ 242 (291)
++|++.-+-.+.++++..+|.. +..-..++.+++.+...+|-.+-|-+ +.-.+..|+..-.+++++
T Consensus 148 ~~D~~~s~~vli~~~~~~~g~~----~~D~i~~i~ia~~i~~~~~~l~~~s~---~~Ll~~~~~~~~~~~i~~ 213 (283)
T 3h90_A 148 QSDVMMNGAILLALGLSWYGWH----RADALFALGIGIYILYSALRMGYEAV---QSLLDRALPDEERQEIID 213 (283)
T ss_dssp HHHHCCCSCSCSSSCSCSTTSC----CSTHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCHHHHHHHHH
Confidence 7888855444444433333421 11223344455555555555555543 111344454445555544
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=40.46 E-value=29 Score=30.94 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=30.4
Q ss_pred cchhhhhhhHHHHHHHHHhhcccCCCchhhHHHHHHHHhHhhhhhhhhccceecCcccCCcCCCCHHHHHHHH
Q 022868 170 LNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAA 242 (291)
Q Consensus 170 ~NDlFaIifAvPAIaLi~~G~~~~g~~pgl~fgiGlGITlYGiaYffVHDglVHqRfp~g~~a~~~Ylrri~~ 242 (291)
++|++.=+.++.++++..+|.. +..-..++.+|+.+...+|.++-|-+ +.-.+..++....++|++
T Consensus 157 ~~D~l~s~~vli~~~~~~~g~~----~~Dpi~ai~Ia~~I~~~~~~l~~~s~---~~Ll~~~~~~~~~~~I~~ 222 (306)
T 3j1z_P 157 KSDLFLNAAVLLALVLSQYGWW----WADGLFAVLIACYIGQQAFDLGYRSI---QALLDRELDEDTRQRIKL 222 (306)
T ss_dssp HHHTTCCTTCCCTTSSCCSSSC----CCHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTCCCCHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhCcc----hhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhCcccchhHHHHHHH
Confidence 6788855544444444444431 21222333344444334444444432 111355566556666654
No 4
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=19.42 E-value=69 Score=21.43 Aligned_cols=16 Identities=50% Similarity=0.561 Sum_probs=9.7
Q ss_pred cCC-hHHHHHHHHHHhh
Q 022868 269 VGG-LEELEKEISKRIK 284 (291)
Q Consensus 269 vgg-~~eL~~~~~r~~~ 284 (291)
||| +|||+|.-..-.|
T Consensus 10 vggtpeelkklkeeakk 26 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKK 26 (36)
T ss_dssp BCCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 555 8888875444333
No 5
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=17.85 E-value=1.7e+02 Score=20.52 Aligned_cols=29 Identities=10% Similarity=0.191 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 022868 102 ERFTYLVAAVMSSFGITSMAVMAVYYRFW 130 (291)
Q Consensus 102 e~~ty~~aa~~ss~g~tsma~~a~y~~f~ 130 (291)
+|++++-...+.+.+.++.+.+..|.+|.
T Consensus 10 ~RRqfln~l~~G~~a~~a~~~~~P~v~ff 38 (49)
T 1q90_R 10 NKRNIMNLILAGGAGLPITTLALGYGAFF 38 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 34455655666777777777788887774
No 6
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=14.51 E-value=86 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=12.4
Q ss_pred HHHHHHhhhhhhHHH
Q 022868 107 LVAAVMSSFGITSMA 121 (291)
Q Consensus 107 ~~aa~~ss~g~tsma 121 (291)
-|.|++||+-|||+.
T Consensus 6 ~VtaiLssLTvTsLl 20 (28)
T 2kdr_X 6 RVTAILSSLTVTQLL 20 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367899999999974
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.62 E-value=1.9e+02 Score=25.86 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHhhcc
Q 022868 174 FAIINAVPAIALLSFGFF 191 (291)
Q Consensus 174 FaIifAvPAIaLi~~G~~ 191 (291)
.+++|+.|+++-=+||..
T Consensus 285 it~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 285 VTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhccCc
Confidence 467788888887788874
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=9.64 E-value=3.4e+02 Score=19.64 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 022868 99 KRSERFTYLVAAVMSSFGITSMAVMAVYYRFW 130 (291)
Q Consensus 99 ~~~e~~ty~~aa~~ss~g~tsma~~a~y~~f~ 130 (291)
+|-.|..|.-.|-++.+|+.-|.+......+.
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIGMLIRIV 54 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577789999999999999988865544443
No 9
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=9.60 E-value=2.9e+02 Score=25.44 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=8.5
Q ss_pred hhhhHHHHHHHHHHHHH
Q 022868 115 FGITSMAVMAVYYRFWW 131 (291)
Q Consensus 115 ~g~tsma~~a~y~~f~~ 131 (291)
+|+..|.++++...++|
T Consensus 229 lG~~Vl~fL~il~~l~y 245 (269)
T 2qjy_B 229 AGFTAVMFLTVLSVLLY 245 (269)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555444444
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=8.75 E-value=1.6e+02 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=9.3
Q ss_pred hhhhHHHHHHHHHhhc
Q 022868 175 AIINAVPAIALLSFGF 190 (291)
Q Consensus 175 aIifAvPAIaLi~~G~ 190 (291)
+++|+.|++.-=+||.
T Consensus 310 t~IflP~T~IaGiyGM 325 (363)
T 2iub_A 310 ATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHhhhcc
Confidence 5566666665556665
Done!