Query 022868
Match_columns 291
No_of_seqs 147 out of 211
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 12:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlaa_ d.227.1.2 (A:) Hypothe 14.1 53 0.0039 23.5 2.8 19 105-123 46-64 (144)
2 d1uspa_ d.227.1.1 (A:) Organic 12.5 63 0.0046 22.8 2.8 17 105-121 46-62 (137)
3 d2onfa1 d.227.1.1 (A:1-139) Hy 11.4 71 0.0052 22.7 2.8 19 105-123 44-62 (139)
4 d2p7tc1 f.14.1.1 (C:86-119) Po 10.4 48 0.0035 20.4 1.2 14 204-217 12-25 (34)
5 d2pn2a1 d.227.1.1 (A:1-132) Un 8.1 1.2E+02 0.0084 21.3 2.8 16 105-120 44-59 (132)
6 d1ej5a_ a.68.1.1 (A:) Wiscott- 8.0 76 0.0055 23.8 1.7 21 266-286 53-73 (107)
7 d1ml8a_ d.227.1.2 (A:) Hypothe 8.0 1.1E+02 0.0079 21.6 2.6 18 105-122 38-55 (134)
8 d1d4ua1 a.6.1.2 (A:37-111) DNA 7.4 88 0.0064 22.1 1.7 27 256-282 41-74 (75)
9 d1y7ua1 d.38.1.1 (A:8-171) Acy 7.3 2.2E+02 0.016 21.3 4.3 11 90-100 143-153 (164)
10 d2d7va1 d.227.1.1 (A:7-161) Hy 7.2 1.3E+02 0.0094 22.0 2.8 19 105-123 61-79 (155)
No 1
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=14.06 E-value=53 Score=23.54 Aligned_cols=19 Identities=11% Similarity=0.452 Sum_probs=15.0
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 022868 105 TYLVAAVMSSFGITSMAVM 123 (291)
Q Consensus 105 ty~~aa~~ss~g~tsma~~ 123 (291)
-|+.||++|+++++..+++
T Consensus 46 elllaala~C~~~~~~~~a 64 (144)
T d1vlaa_ 46 ELVLTGLMGCTGMDVVSIL 64 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999887765554
No 2
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=12.52 E-value=63 Score=22.82 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhhhhHHH
Q 022868 105 TYLVAAVMSSFGITSMA 121 (291)
Q Consensus 105 ty~~aa~~ss~g~tsma 121 (291)
.|+.||+.|++++|...
T Consensus 46 elllaAlasC~~~t~~~ 62 (137)
T d1uspa_ 46 QLFAAGYAACFQGALGV 62 (137)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58999999998776543
No 3
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=11.43 E-value=71 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 022868 105 TYLVAAVMSSFGITSMAVM 123 (291)
Q Consensus 105 ty~~aa~~ss~g~tsma~~ 123 (291)
-|+.||++|+++++...++
T Consensus 44 elllaala~C~~~~~~~~a 62 (139)
T d2onfa1 44 TLFPSVLASCLLTTFLEFK 62 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999988765543
No 4
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=10.44 E-value=48 Score=20.43 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=10.3
Q ss_pred HHHHhHhhhhhhhh
Q 022868 204 GLGITVFGMAYMFV 217 (291)
Q Consensus 204 GlGITlYGiaYffV 217 (291)
-.|||.||+.+--+
T Consensus 12 vagits~glv~aa~ 25 (34)
T d2p7tc1 12 VAGITSFGLVTAAL 25 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EeccchhhhHHHHH
Confidence 46899999876543
No 5
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=8.07 E-value=1.2e+02 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhhhhHH
Q 022868 105 TYLVAAVMSSFGITSM 120 (291)
Q Consensus 105 ty~~aa~~ss~g~tsm 120 (291)
-|++||++++++++.-
T Consensus 44 eLllaala~C~~~~~~ 59 (132)
T d2pn2a1 44 DLLATSLASCMLTIIG 59 (132)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999887643
No 6
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.03 E-value=76 Score=23.82 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=15.9
Q ss_pred hhhcCChHHHHHHHHHHhhhc
Q 022868 266 LEEVGGLEELEKEISKRIKSY 286 (291)
Q Consensus 266 ye~vgg~~eL~~~~~r~~~~~ 286 (291)
|++-||+|..++|+++.....
T Consensus 53 iek~gG~e~v~~e~~~~g~~~ 73 (107)
T d1ej5a_ 53 IEDQGGLEAVRQEMRRQGGSG 73 (107)
T ss_dssp HHHTTHHHHHHHHHHHTTTSS
T ss_pred HHHcCChHHHHHHHHHHcccc
Confidence 466799999999998755443
No 7
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=7.98 E-value=1.1e+02 Score=21.58 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 022868 105 TYLVAAVMSSFGITSMAV 122 (291)
Q Consensus 105 ty~~aa~~ss~g~tsma~ 122 (291)
-||++|+.++++++...+
T Consensus 38 elllaal~~C~~~~~~~~ 55 (134)
T d1ml8a_ 38 EMVLMAAGGCSAIDVVSI 55 (134)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 489999999988776554
No 8
>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.38 E-value=88 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=18.8
Q ss_pred cee--eeeechhhhh----c-CChHHHHHHHHHH
Q 022868 256 PYG--LFLGPKELEE----V-GGLEELEKEISKR 282 (291)
Q Consensus 256 ~FG--~ll~P~kye~----v-gg~~eL~~~~~r~ 282 (291)
.|| .|+.-...|+ | |+.|.|++|..+|
T Consensus 41 ~~~~MkLYlr~qVE~~A~e~WGs~E~L~~E~~~R 74 (75)
T d1d4ua1 41 QWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVR 74 (75)
T ss_dssp CCSCCEEECHHHHHHHHHHHTSSHHHHHHHHHHC
T ss_pred CCCCceeeehHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 355 4555554544 4 9999999999887
No 9
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=7.32 E-value=2.2e+02 Score=21.26 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=5.0
Q ss_pred HHHHHHHHhhh
Q 022868 90 ARVAEKLARKR 100 (291)
Q Consensus 90 ~~~~~~~~r~~ 100 (291)
.|..+|..|++
T Consensus 143 ~r~~~R~~r~~ 153 (164)
T d1y7ua1 143 LRAEQRHIRKA 153 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 10
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio cholerae [TaxId: 666]}
Probab=7.20 E-value=1.3e+02 Score=22.03 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 022868 105 TYLVAAVMSSFGITSMAVM 123 (291)
Q Consensus 105 ty~~aa~~ss~g~tsma~~ 123 (291)
.+++||+.|+++++..+++
T Consensus 61 eLllaAlasC~~~t~~~~a 79 (155)
T d2d7va1 61 EAFVAALSSCHMLVFLSIA 79 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999998887765544
Done!