BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022869
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AKL|A Chain A, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
Nucleocapsid Protein
pdb|4AKL|B Chain B, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
Nucleocapsid Protein
Length = 482
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 48 LRVSVPPQSGDLPLQTLYDINGDTYAW----GFRAKTNIVTVTFHNPGVQEDPACGPLID 103
L+V VP ++ L++ W GFR N T N + E G ++
Sbjct: 113 LKVEVPK------IEQLFNYQQAALKWRKDIGFRVNAN--TAALSNKVLAEYKVPGEIV- 163
Query: 104 AVAIKELYPPMPTRDNLVKNPGFEEGPH 131
+++KE+ M R NL+ N G +E P
Sbjct: 164 -MSVKEMLSDMIRRRNLILNRGGDENPR 190
>pdb|4AQF|C Chain C, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQG|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 18 ASISQTITVKPGALYALTFGASRTCAQDEV---LRVSVPPQSGDLPLQTLYDINGDTYAW 74
A +S T VK G L A + DE L+V VP ++ L W
Sbjct: 82 AWVSSTGIVKKG-LEWFEKNAGTIKSWDESYTELKVDVPK------IEQLTGYQQAALKW 134
Query: 75 ----GFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYPPMPTRDNLVKNPGFEEGP 130
GFR N T N + E G ++ +++KE+ M R NL+ N G +E P
Sbjct: 135 RKDIGFRVNAN--TAALSNKVLAEYKVPGEIV--MSVKEMLSDMIRRRNLILNRGGDENP 190
Query: 131 H 131
Sbjct: 191 R 191
>pdb|4AQF|A Chain A, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
pdb|4AQF|B Chain B, X-Ray Crystallographic Structure Of Crimean-Congo
Haemorrhagic Fever Virus Nucleoprotein
Length = 483
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 18 ASISQTITVKPGALYALTFGASRTCAQDEV---LRVSVPPQSGDLPLQTLYDINGDTYAW 74
A +S T VK G L A + DE L+V VP ++ L W
Sbjct: 82 AWVSSTGIVKKG-LEWFEKNAGTIKSWDESYTELKVDVPK------IEQLTGYQQAALKW 134
Query: 75 ----GFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYPPMPTRDNLVKNPGFEEGP 130
GFR N T N + E G ++ +++KE+ M R NL+ N G +E P
Sbjct: 135 RKDIGFRVNAN--TAALSNKVLAEYKVPGEIV--MSVKEMLSDMIRRRNLILNRGGDENP 190
Query: 131 H 131
Sbjct: 191 R 191
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 186 GRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKGKGGFKS 245
GRE+ Q NKE N + N G + + F + T+ P +S GG
Sbjct: 13 GRENLYFQGALKRINKELN-DLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFF 71
Query: 246 ASLKFKAIA--ARTRITFFSTYYHTKINDFGSLCGPVLDE 283
++ F + ++ F + YH IN G++C +L +
Sbjct: 72 LNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD 111
>pdb|1UI6|A Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor
(Arpa-Like Protein)
pdb|1UI6|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor
(Arpa-Like Protein)
Length = 215
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 ALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQ 62
AL LTFG +R C Q VLR + + +P++
Sbjct: 85 ALMRLTFGMARLCVQGPVLRAGLRLATAGVPVR 117
>pdb|1UI5|A Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa
Like Protein)
pdb|1UI5|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa
Like Protein)
Length = 215
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 ALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQ 62
AL LTFG +R C Q VLR + + +P++
Sbjct: 85 ALXRLTFGXARLCVQGPVLRAGLRLATAGVPVR 117
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
Length = 426
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 58 DLPLQTLYDINGDTYAWGFRAKTN--------IVTVTFHNPGVQEDPACGPLIDAVAIK- 108
D+ + LY + W R KTN + T+TFH P ++ P C L IK
Sbjct: 297 DMQIPILYSL-----TWPDRIKTNLKPLDLAQVSTLTFHKPSLEHFP-CIKLAYQAGIKG 350
Query: 109 ELYPPMPTRDNLVKNPGF 126
YP + N + N F
Sbjct: 351 NFYPTVLNASNEIANNLF 368
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 58 DLPLQTLYDINGDTYAWGFRAKTN--------IVTVTFHNPGVQEDPACGPLIDAVAIK- 108
D+ + LY + W R KTN + T+TFH P ++ P C L IK
Sbjct: 359 DMQIPILYSL-----TWPDRIKTNLKPLDLAQVSTLTFHKPSLEHFP-CIKLAYQAGIKG 412
Query: 109 ELYPPMPTRDNLVKNPGF 126
YP + N + N F
Sbjct: 413 NFYPTVLNASNEIANNLF 430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,967,132
Number of Sequences: 62578
Number of extensions: 367433
Number of successful extensions: 759
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 8
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)