BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022869
         (291 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7Z407|CSMD3_HUMAN CUB and sushi domain-containing protein 3 OS=Homo sapiens GN=CSMD3
            PE=2 SV=3
          Length = 3707

 Score = 35.0 bits (79), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 16   NEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDINGDTYAWG 75
            N       I V PG + +L F A  T A  ++LRV   P   D+ L+   +I+G     G
Sbjct: 1437 NNLRCMWMIEVDPGNIVSLQFLAFDTEASHDILRVWDGPPENDMLLK---EISGSLIPEG 1493

Query: 76   FRAKTNIVTVTF 87
              +  NIVT+ F
Sbjct: 1494 IHSTLNIVTIQF 1505


>sp|P33545|DSC2_BOVIN Desmocollin-2 (Fragment) OS=Bos taurus GN=DSC2 PE=2 SV=1
          Length = 863

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 22/46 (47%)

Query: 67  INGDTYAWGFRAKTNIVTVTFHNPGVQEDPACGPLIDAVAIKELYP 112
           +N   Y    R+ TN+ TVT +     E P C P +  V IKE  P
Sbjct: 392 VNEAPYTGTSRSTTNMATVTVNVQNQDEGPECDPRVQTVRIKENVP 437


>sp|Q8EPB3|THII_OCEIH Probable tRNA sulfurtransferase OS=Oceanobacillus iheyensis (strain
           DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=thiI PE=3
           SV=1
          Length = 400

 Score = 32.3 bits (72), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 20/92 (21%)

Query: 8   GVH----AIRLGNEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPL-- 61
           G+H    AIR+ N         +K GALYAL     +  A  +  +V+V   S D P+  
Sbjct: 71  GIHSLSIAIRVENTEE-----QIKEGALYAL-----KREANAKTFKVTVKRISKDFPIPS 120

Query: 62  QTLYDINGDTYAWGFRAKTNIVTVTFHNPGVQ 93
           Q +  I G        A TN +TV  H P V+
Sbjct: 121 QQMNQILG----GHLLANTNDITVNVHEPDVE 148


>sp|Q80T79|CSMD3_MOUSE CUB and sushi domain-containing protein 3 OS=Mus musculus GN=Csmd3
            PE=2 SV=3
          Length = 3707

 Score = 32.0 bits (71), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 16   NEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDINGDTYAWG 75
            N       I V PG + +L F A  T A  ++LRV   P   ++ L+   +++G     G
Sbjct: 1437 NNLRCMWMIEVDPGNIVSLQFLAFDTEASHDILRVWDGPPENEMLLK---EVSGSLIPDG 1493

Query: 76   FRAKTNIVTVTF 87
              +  NIVT+ F
Sbjct: 1494 IHSTLNIVTIQF 1505


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,787,507
Number of Sequences: 539616
Number of extensions: 4646383
Number of successful extensions: 8922
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8914
Number of HSP's gapped (non-prelim): 10
length of query: 291
length of database: 191,569,459
effective HSP length: 116
effective length of query: 175
effective length of database: 128,974,003
effective search space: 22570450525
effective search space used: 22570450525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)