Query 022869
Match_columns 291
No_of_seqs 141 out of 221
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 1E-104 2E-109 765.5 33.2 290 1-290 76-366 (373)
2 PLN03089 hypothetical protein; 100.0 4E-44 8.6E-49 345.6 17.6 156 115-290 24-187 (373)
3 PF04862 DUF642: Protein of un 100.0 7.5E-42 1.6E-46 295.2 19.3 149 119-287 1-159 (159)
4 PF04862 DUF642: Protein of un 100.0 1.1E-32 2.3E-37 238.2 12.5 108 1-108 50-159 (159)
5 PF02018 CBM_4_9: Carbohydrate 98.9 1.6E-07 3.6E-12 74.6 15.3 116 118-263 1-126 (131)
6 PF02018 CBM_4_9: Carbohydrate 95.2 0.24 5.3E-06 39.0 9.6 82 6-89 32-126 (131)
7 PF15425 DUF4627: Domain of un 93.7 1.4 3E-05 40.3 12.0 80 116-210 4-96 (212)
8 cd06263 MAM Meprin, A5 protein 92.9 2.9 6.4E-05 34.7 12.1 80 202-288 72-154 (157)
9 PF00629 MAM: MAM domain; Int 79.6 30 0.00066 27.8 11.4 89 191-288 64-155 (160)
10 PF08308 PEGA: PEGA domain; I 69.0 14 0.00031 27.0 5.2 36 174-209 32-67 (71)
11 PF05547 Peptidase_M6: Immune 66.9 89 0.0019 33.5 12.3 104 176-287 339-459 (645)
12 smart00137 MAM Domain in mepri 64.6 87 0.0019 26.5 12.4 81 202-289 76-159 (161)
13 PF14344 DUF4397: Domain of un 63.4 12 0.00026 30.1 4.2 38 2-39 37-82 (122)
14 PF08308 PEGA: PEGA domain; I 53.7 37 0.0008 24.8 5.1 34 4-37 31-66 (71)
15 PF14900 DUF4493: Domain of un 49.9 39 0.00084 30.7 5.6 53 2-54 155-220 (235)
16 PF03422 CBM_6: Carbohydrate b 41.9 1.7E+02 0.0038 23.1 14.4 101 177-287 21-124 (125)
17 PF07987 DUF1775: Domain of un 41.4 79 0.0017 27.6 5.9 28 197-227 9-40 (145)
18 cd03516 Link_domain_CD44_like 33.5 28 0.0006 30.6 1.8 79 24-103 9-111 (144)
19 cd08545 YcnI_like Reeler-like 33.5 87 0.0019 27.5 5.0 28 196-226 11-42 (152)
20 TIGR02148 Fibro_Slime fibro-sl 30.4 76 0.0017 25.8 3.8 49 172-223 31-85 (90)
21 PF07675 Cleaved_Adhesin: Clea 28.7 3.8E+02 0.0083 23.1 8.3 83 191-286 66-167 (167)
22 PF11182 AlgF: Alginate O-acet 26.8 77 0.0017 28.7 3.5 36 2-40 62-97 (181)
23 KOG3033 Predicted PhzC/PhzF-ty 26.5 59 0.0013 31.5 2.9 56 38-100 170-228 (286)
24 PF14344 DUF4397: Domain of un 26.5 95 0.0021 24.8 3.8 46 163-208 28-80 (122)
25 PF14900 DUF4493: Domain of un 25.2 3.1E+02 0.0068 24.8 7.3 39 172-210 156-205 (235)
26 PF04300 FBA: F-box associated 25.1 2.4E+02 0.0052 25.3 6.4 66 220-287 108-181 (184)
27 PF05506 DUF756: Domain of unk 24.3 3.3E+02 0.0071 20.9 6.3 59 11-76 23-86 (89)
28 cd08895 SRPBCC_CalC_Aha1-like_ 23.1 4.2E+02 0.009 21.6 10.4 22 245-266 99-120 (146)
29 PF11280 DUF3081: Protein of u 23.1 1E+02 0.0022 24.5 3.2 34 57-90 23-57 (79)
30 smart00606 CBD_IV Cellulose Bi 22.7 4E+02 0.0087 21.3 10.1 28 195-224 47-74 (129)
31 COG3536 Uncharacterized protei 21.8 1.2E+02 0.0025 26.0 3.4 51 138-192 34-86 (120)
32 PLN03150 hypothetical protein; 21.2 7.2E+02 0.016 26.1 9.9 83 194-290 86-174 (623)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=9.7e-105 Score=765.46 Aligned_cols=290 Identities=70% Similarity=1.193 Sum_probs=286.6
Q ss_pred CeEeccCCceeEEecCcceeeEEeEecCCcEEEEEEecccccccccceeEEeCCCCCCcceeeeeecCC-CeEEEEEEec
Q 022869 1 MFFPVSHGVHAIRLGNEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDING-DTYAWGFRAK 79 (291)
Q Consensus 1 m~~~vp~g~~AvrLG~~a~I~Q~~~~~~g~~YslTF~a~rtCaq~e~l~vsv~~~~~~~~~qt~Y~~~g-dsy~~~f~a~ 79 (291)
|+|+||+|+||||||+|++|+|+|++++|++|+|||+++|+|+|+|.|+|+|+++++++|+|++|+++| |+|+|+|+|+
T Consensus 76 m~~~vP~G~~Av~LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~ 155 (373)
T PLN03089 76 MLLVVPEGAHAVRLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAE 155 (373)
T ss_pred eeEECCCCchhhhcCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CceEEEEEeCCCCCCCCCcccceeeEEeeecCCCCcCCcCCcCCCCCCcCCCCCCCCCcceecCCccccCCCCCCCeEEe
Q 022869 80 TNIVTVTFHNPGVQEDPACGPLIDAVAIKELYPPMPTRDNLVKNPGFEEGPHRLVNTTNGVLLPPRQEDLTSPLPGWIIE 159 (291)
Q Consensus 80 ~~~v~l~~~n~~~~~d~~Cgp~id~vaik~l~~p~~~~~NLl~NG~FE~gP~~~~n~s~gvl~p~~~~~~~s~LpGW~i~ 159 (291)
++.++|+||||++++||+|||+||+|+||+|++|+++++|||+||+||+||++++|++|||||||++++++|+||||||+
T Consensus 156 s~~t~l~F~~~~~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~ 235 (373)
T PLN03089 156 SDVVNLVFHNPGVEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIE 235 (373)
T ss_pred cccEEEEEECcccCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceEEEEeCCCccCCCCCeEEEecCCCCceEEEEEeccCCCeEEEEEEeccCCCCCccceEEEEEcCCCcEEEEeeeCC
Q 022869 160 SLKAVKFIDAKHFNVPYGHAAVELVAGRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFESKG 239 (291)
Q Consensus 160 g~~~V~YI~s~~~~vP~G~~AVeL~aG~e~~I~Q~~~T~~G~~Y~LTFslg~A~n~c~g~l~V~v~~~~~~~~~~y~s~G 239 (291)
++|+|||||++||.||+|+|||||++|+|++|+|+|+|++|+.|+|+|+||||+|.|.|+|.|+++++..+++++|+++|
T Consensus 236 s~~~V~yids~h~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g 315 (373)
T PLN03089 236 SLKAVKYIDSAHFSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQG 315 (373)
T ss_pred cCccEEEEecCcccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEEEEccceEEEEEEeCCcccccCCCCCccceeeeeEEEEeec
Q 022869 240 KGGFKSASLKFKAIAARTRITFFSTYYHTKINDFGSLCGPVLDEVRVLSIR 290 (291)
Q Consensus 240 ~~gw~~~s~~F~A~~~~T~l~F~S~~~~~~~D~~~s~CGPvIDdV~V~~~~ 290 (291)
+++|++++|.|+|++++|||+|+|.+||+|+||++++|||+||||+|++++
T Consensus 316 ~gg~~~~s~~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~ 366 (373)
T PLN03089 316 KGGFKRASLRFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVR 366 (373)
T ss_pred CcceEEEEEEEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEcc
Confidence 999999999999999999999999999999999999999999999999875
No 2
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=4e-44 Score=345.56 Aligned_cols=156 Identities=28% Similarity=0.501 Sum_probs=140.5
Q ss_pred cCCcCCcCCCCCCcCCCCC-CCCCcceecCCccccCCCCCCCeEEeecceEEEEeCCC------ccCCCCCeEEEecCCC
Q 022869 115 PTRDNLVKNPGFEEGPHRL-VNTTNGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKH------FNVPYGHAAVELVAGR 187 (291)
Q Consensus 115 ~~~~NLl~NG~FE~gP~~~-~n~s~gvl~p~~~~~~~s~LpGW~i~g~~~V~YI~s~~------~~vP~G~~AVeL~aG~ 187 (291)
..++|||+|||||+||+++ +|.+ ++++.++||||+|+| .||||+++| |.||+|+||||| |+
T Consensus 24 ~~~~nLL~NG~FE~gP~~~~~n~t--------~~~g~s~LPgW~i~g--~VeyI~s~~~~~~m~~~vP~G~~Av~L--G~ 91 (373)
T PLN03089 24 PVTDGLLPNGDFETPPKKSQMNGT--------VVIGKNAIPGWEISG--FVEYISSGQKQGGMLLVVPEGAHAVRL--GN 91 (373)
T ss_pred cccCCeecCCCccCCCCcCCCCcc--------cccCCCCCCCCEecC--cEEEEeCCCccCceeEECCCCchhhhc--CC
Confidence 4678999999999999985 7766 678999999999988 999999999 999999999999 99
Q ss_pred CceEEEEEeccCCCeEEEEEEeccCCCCCccceEEEEEcCCCcEEEEeee-CCCCCcEEEEEEEEEccceEEEEEEeCCc
Q 022869 188 ESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKDTVAVPFES-KGKGGFKSASLKFKAIAARTRITFFSTYY 266 (291)
Q Consensus 188 e~~I~Q~~~T~~G~~Y~LTFslg~A~n~c~g~l~V~v~~~~~~~~~~y~s-~G~~gw~~~s~~F~A~~~~T~l~F~S~~~ 266 (291)
|++|+|+|+|++|+.|+|||+++ |+|++++.|+|.+..+..+++|++ .+++||++|+|+|+|++++|+|+|++.
T Consensus 92 e~sI~Q~i~t~~G~~Y~LTFs~a---r~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~~~-- 166 (373)
T PLN03089 92 EASISQTLTVTKGSYYSLTFSAA---RTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNP-- 166 (373)
T ss_pred CceEEEEEEccCCCEEEEEEEec---CCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEECc--
Confidence 99999999999999999999964 899999888888777777788877 578899999999999999999999965
Q ss_pred ccccCCCCCccceeeeeEEEEeec
Q 022869 267 HTKINDFGSLCGPVLDEVRVLSIR 290 (291)
Q Consensus 267 ~~~~D~~~s~CGPvIDdV~V~~~~ 290 (291)
+++.| + +|||+||||+|+.++
T Consensus 167 ~~~~D--~-~CGPviD~VaIk~l~ 187 (373)
T PLN03089 167 GVEED--P-ACGPLIDAVAIKTLF 187 (373)
T ss_pred ccCCC--C-cccceeeeEEEeecc
Confidence 45556 5 899999999999763
No 3
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=7.5e-42 Score=295.23 Aligned_cols=149 Identities=38% Similarity=0.674 Sum_probs=125.8
Q ss_pred CCcCCCCCCcCCCC-CCCCCcceecCCccccCCCCCCCeEEeecceEEEEeCCCcc------CCCCCeEEEecCCCCceE
Q 022869 119 NLVKNPGFEEGPHR-LVNTTNGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKHFN------VPYGHAAVELVAGRESAI 191 (291)
Q Consensus 119 NLl~NG~FE~gP~~-~~n~s~gvl~p~~~~~~~s~LpGW~i~g~~~V~YI~s~~~~------vP~G~~AVeL~aG~e~~I 191 (291)
|||+||+||++|+. .++.++ +.++.++||||+++| .||||+++|+. +|+|+||||| |++++|
T Consensus 1 nLl~NG~FE~~p~~~~~~~~~-------~~~~~s~ipGWtv~g--~Ve~i~~~~~~g~~~~~~p~G~~aveL--g~~~~I 69 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNSNMNGTS-------LSDGSSSIPGWTVSG--SVEYIDSGHFQGGMYFAVPEGKQAVEL--GNEGSI 69 (159)
T ss_pred CCccCCCCCCCCccCCCCcce-------EccCCCcCCCcEEcC--EEEEEecCCccCceeeeCCCCceEEEc--CCCceE
Confidence 89999999999997 445553 556899999999998 69999999987 9999999999 999999
Q ss_pred EEEEeccCCCeEEEEEEeccCCCCCccc--eEEEEEcCCCcEEEEeeeCCC-CCcEEEEEEEEEccceEEEEEEeCCccc
Q 022869 192 AQILRTVPNKEYNLTFTIGDAKNGCHGS--MRVEAFAGKDTVAVPFESKGK-GGFKSASLKFKAIAARTRITFFSTYYHT 268 (291)
Q Consensus 192 ~Q~~~T~~G~~Y~LTFslg~A~n~c~g~--l~V~v~~~~~~~~~~y~s~G~-~gw~~~s~~F~A~~~~T~l~F~S~~~~~ 268 (291)
+|+|+|++|++|+|||+++ +.|++. |+|+|.++ ....+++.+..+ ++|++++|.|+|.+++++|.|++.+ +
T Consensus 70 ~Q~~~t~~G~~Y~LtF~~~---~~~~~~~~l~V~v~~~-~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~--~ 143 (159)
T PF04862_consen 70 SQTFTTVPGSTYTLTFSLA---RNCAQSESLSVSVGGQ-FSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPG--M 143 (159)
T ss_pred EEEEEccCCCEEEEEEEec---CCCCCCccEEEEEecc-cceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCC--c
Confidence 9999999999999999975 788775 88888775 567777776654 4599999999997766677775553 4
Q ss_pred ccCCCCCccceeeeeEEEE
Q 022869 269 KINDFGSLCGPVLDEVRVL 287 (291)
Q Consensus 269 ~~D~~~s~CGPvIDdV~V~ 287 (291)
+.| + +|||+||||+||
T Consensus 144 ~~d--~-~cGp~iDnV~vk 159 (159)
T PF04862_consen 144 ESD--S-ACGPVIDNVSVK 159 (159)
T ss_pred cCC--C-CceeEEEEEEeC
Confidence 335 4 999999999996
No 4
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=1.1e-32 Score=238.23 Aligned_cols=108 Identities=53% Similarity=0.868 Sum_probs=105.7
Q ss_pred CeEeccCCceeEEecCcceeeEEeEecCCcEEEEEEecccccccccceeEEeCCC-CCCcceeeeeecCC-CeEEEEEEe
Q 022869 1 MFFPVSHGVHAIRLGNEASISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQ-SGDLPLQTLYDING-DTYAWGFRA 78 (291)
Q Consensus 1 m~~~vp~g~~AvrLG~~a~I~Q~~~~~~g~~YslTF~a~rtCaq~e~l~vsv~~~-~~~~~~qt~Y~~~g-dsy~~~f~a 78 (291)
|+++||+|.||||||+|++|+|+|++++|+.|.|||+++|+|++.|.|+|+|.++ ..+++++++|++.| ++|+|.|+|
T Consensus 50 ~~~~~p~G~~aveLg~~~~I~Q~~~t~~G~~Y~LtF~~~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A 129 (159)
T PF04862_consen 50 MYFAVPEGKQAVELGNEGSISQTFTTVPGSTYTLTFSLARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTA 129 (159)
T ss_pred eeeeCCCCceEEEcCCCceEEEEEEccCCCEEEEEEEecCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEe
Confidence 8999999999999999999999999999999999999999999999999999985 89999999999999 999999999
Q ss_pred cCceEEEEEeCCCCCCCCCcccceeeEEee
Q 022869 79 KTNIVTVTFHNPGVQEDPACGPLIDAVAIK 108 (291)
Q Consensus 79 ~~~~v~l~~~n~~~~~d~~Cgp~id~vaik 108 (291)
..++++|+|||+++++|++|||+||+|+||
T Consensus 130 ~~t~~~l~f~~~~~~~d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 130 SSTRITLTFHNPGMESDSACGPVIDNVSVK 159 (159)
T ss_pred CCCEEEEEEECCCccCCCCceeEEEEEEeC
Confidence 999999999999999999999999999998
No 5
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.87 E-value=1.6e-07 Score=74.63 Aligned_cols=116 Identities=23% Similarity=0.323 Sum_probs=75.3
Q ss_pred cCCcCCCCCCcCCCCCCCCCcceecCCccccCCCCCCCeEEeecc-eEEEEeCCCccCCCCCeEEEecCCCC--ceEE--
Q 022869 118 DNLVKNPGFEEGPHRLVNTTNGVLLPPRQEDLTSPLPGWIIESLK-AVKFIDAKHFNVPYGHAAVELVAGRE--SAIA-- 192 (291)
Q Consensus 118 ~NLl~NG~FE~gP~~~~n~s~gvl~p~~~~~~~s~LpGW~i~g~~-~V~YI~s~~~~vP~G~~AVeL~aG~e--~~I~-- 192 (291)
.|||+||+||+| .+.+|...+.. ....++.. .|.+++.+..+.. ..+.
T Consensus 1 ~nli~N~~Fe~~----------------------~~~~W~~~~~~~~~~~~~~~-----~g~~~l~v~~~~~~~~~~~~~ 53 (131)
T PF02018_consen 1 GNLIKNGGFEDG----------------------GLSGWSFWGNSGASASVDNA-----SGNYSLKVSNRSATWDGQSQQ 53 (131)
T ss_dssp GBSSSSTTSTTT----------------------STTTEEEESSTTEEEEEEEC-----SSSEEEEEECCSSGCGEEEEE
T ss_pred CCEEECCCccCC----------------------CCCCCEEccCCCEEEEEEcC-----CCeEEEEEECCCCCcccccee
Confidence 489999999992 23578887622 23444442 8999999965543 2333
Q ss_pred EEEeccCCCeEEEEEEeccCCCCCccceEEEEEcCCC-c-EEEEe-eeCCCCCcEEEEEEEEEcc--ceEEEEEEe
Q 022869 193 QILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGKD-T-VAVPF-ESKGKGGFKSASLKFKAIA--ARTRITFFS 263 (291)
Q Consensus 193 Q~~~T~~G~~Y~LTFslg~A~n~c~g~l~V~v~~~~~-~-~~~~y-~s~G~~gw~~~s~~F~A~~--~~T~l~F~S 263 (291)
+.+...+|++|+|+|.+-.... ..+.|.+..... . ..+.. ....++.|++++..|++.. ...+|.|+.
T Consensus 54 ~~~~l~~G~~Y~~s~~vk~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 54 QTISLKPGKTYTVSFWVKADSG---GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEEE-TTSEEEEEEEEEESSS---EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred cceEecCCCEEEEEEEEEeCCC---CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 3368999999999999744222 456666665544 2 22222 2333567999999999995 555666665
No 6
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=95.21 E-value=0.24 Score=39.03 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=53.6
Q ss_pred cCCceeEEecCcc----e--eeEEeEecCCcEEEEEEecccccccccceeEEeCCCCCC----cceeeeeecCC-CeEEE
Q 022869 6 SHGVHAIRLGNEA----S--ISQTITVKPGALYALTFGASRTCAQDEVLRVSVPPQSGD----LPLQTLYDING-DTYAW 74 (291)
Q Consensus 6 p~g~~AvrLG~~a----~--I~Q~~~~~~g~~YslTF~a~rtCaq~e~l~vsv~~~~~~----~~~qt~Y~~~g-dsy~~ 74 (291)
+.|.+++++-+.+ . +.+.+.+++|..|.|+|-+-.... ..++|.+....+. +..+..-.+.. ..|..
T Consensus 32 ~~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~ 109 (131)
T PF02018_consen 32 ASGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKADSG--GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSG 109 (131)
T ss_dssp CSSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEESSS--EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEE
T ss_pred CCCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEeCCC--CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEE
Confidence 4788999884432 2 334468999999999999766666 4777777666652 11122333344 77888
Q ss_pred EEEec--CceEEEEEeC
Q 022869 75 GFRAK--TNIVTVTFHN 89 (291)
Q Consensus 75 ~f~a~--~~~v~l~~~n 89 (291)
.|++. .+.++|.||-
T Consensus 110 ~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 110 TFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEEESSCEEEEEEEEE
T ss_pred EEEECCCCceEEEEEEe
Confidence 88665 6777888874
No 7
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=93.75 E-value=1.4 Score=40.31 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=37.0
Q ss_pred CCcCCcCCCCCCcCCCCCCCCCcceecCCccccCCCCCCCeEEee-----cceEEEEeCCCccCCCCCeEEEecCCCC--
Q 022869 116 TRDNLVKNPGFEEGPHRLVNTTNGVLLPPRQEDLTSPLPGWIIES-----LKAVKFIDAKHFNVPYGHAAVELVAGRE-- 188 (291)
Q Consensus 116 ~~~NLl~NG~FE~gP~~~~n~s~gvl~p~~~~~~~s~LpGW~i~g-----~~~V~YI~s~~~~vP~G~~AVeL~aG~e-- 188 (291)
.+.|||+||+|.+ |..+-+.+ .....+.-|-+.. ...+-++.++. -.=..++++ ++-+
T Consensus 4 ~AQnLIkN~~F~t-~Lt~e~~~----------as~~T~~~Wfavnde~~G~Tt~a~~~tnD---~k~~na~~i-s~~~~~ 68 (212)
T PF15425_consen 4 SAQNLIKNGDFDT-PLTNENTT----------ASNTTFGKWFAVNDEWDGATTIAWINTND---QKTGNAWGI-SSWDKQ 68 (212)
T ss_dssp ------SSTT--S-----B-SS----------GGGS-TTSEEEEE-S-TTS-EEEEEE-S----TTS-EEEEE-TT-SS-
T ss_pred chhhhhhcCccCc-chhccccC----------cCcccccceEEEecccCCceEeeeeccCc---ccccceEEE-eecccC
Confidence 3679999999997 76644433 1233566787662 12445555443 112237777 3432
Q ss_pred -----ceEEEEE-eccCCCeEEEEEEec
Q 022869 189 -----SAIAQIL-RTVPNKEYNLTFTIG 210 (291)
Q Consensus 189 -----~~I~Q~~-~T~~G~~Y~LTFslg 210 (291)
+-+.|.+ .-..-..|.|+|..-
T Consensus 69 tsWykafLaQr~~~gae~~mYtLsF~Ak 96 (212)
T PF15425_consen 69 TSWYKAFLAQRYTNGAEKGMYTLSFDAK 96 (212)
T ss_dssp --TTTEEEEEEE-S---SSEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcccccceEEEEEEee
Confidence 6789999 566677899999963
No 8
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=92.93 E-value=2.9 Score=34.73 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=55.3
Q ss_pred eEEEEEEeccCCCCCccceEEEEEcCCC-cEEEEeeeCCC--CCcEEEEEEEEEccceEEEEEEeCCcccccCCCCCccc
Q 022869 202 EYNLTFTIGDAKNGCHGSMRVEAFAGKD-TVAVPFESKGK--GGFKSASLKFKAIAARTRITFFSTYYHTKINDFGSLCG 278 (291)
Q Consensus 202 ~Y~LTFslg~A~n~c~g~l~V~v~~~~~-~~~~~y~s~G~--~gw~~~s~~F~A~~~~T~l~F~S~~~~~~~D~~~s~CG 278 (291)
..-|+|.+=-.+.. .+.|+|.+..... .....++..|. ..|....+.+.+....-+|+|....- . +....
T Consensus 72 ~~Cl~F~y~~~g~~-~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~----~--~~~g~ 144 (157)
T cd06263 72 SHCLSFWYHMYGSG-VGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRG----S--GSRGD 144 (157)
T ss_pred CeEEEEEEEecCCC-CCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEEC----C--Ccccc
Confidence 44499987444333 5669998876655 23344444443 56999999999998999999999621 1 22455
Q ss_pred eeeeeEEEEe
Q 022869 279 PVLDEVRVLS 288 (291)
Q Consensus 279 PvIDdV~V~~ 288 (291)
=.||||+|.+
T Consensus 145 IAIDdI~l~~ 154 (157)
T cd06263 145 IALDDISLSP 154 (157)
T ss_pred EEEeEEEEec
Confidence 6899999975
No 9
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=79.62 E-value=30 Score=27.77 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=45.2
Q ss_pred EEEEEeccCCCeEEEEEEeccCCCCCccceEEEEEcCC-CcEEE--EeeeCCCCCcEEEEEEEEEccceEEEEEEeCCcc
Q 022869 191 IAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGK-DTVAV--PFESKGKGGFKSASLKFKAIAARTRITFFSTYYH 267 (291)
Q Consensus 191 I~Q~~~T~~G~~Y~LTFslg~A~n~c~g~l~V~v~~~~-~~~~~--~y~s~G~~gw~~~s~~F~A~~~~T~l~F~S~~~~ 267 (291)
++..| ...+ .+-|+|.+--.+.. .+.|+|.+.... ...+. .........|.+..+.+.+....-+|.|....-.
T Consensus 64 ~Sp~~-~~~~-~~cl~F~y~~~g~~-~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~~ 140 (160)
T PF00629_consen 64 ISPVF-PASG-NSCLSFWYYMYGSS-VGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRGS 140 (160)
T ss_dssp EEEEE---SS---EEEEEEEEE-SS-SEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE--
T ss_pred ccccc-cccc-cceeEEEEeecccc-ceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEcC
Confidence 34445 3334 55599998442222 245888886552 12111 1222224679999999999999999999985211
Q ss_pred cccCCCCCccceeeeeEEEEe
Q 022869 268 TKINDFGSLCGPVLDEVRVLS 288 (291)
Q Consensus 268 ~~~D~~~s~CGPvIDdV~V~~ 288 (291)
+..-.=.||||.|.+
T Consensus 141 ------~~~~~iaiDdi~~~~ 155 (160)
T PF00629_consen 141 ------SYRGDIAIDDISLSP 155 (160)
T ss_dssp ------SS--EEEEEEEEEES
T ss_pred ------CCceEEEEEEEEEeC
Confidence 112345699999974
No 10
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=69.05 E-value=14 Score=26.99 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCCCeEEEecCCCCceEEEEEeccCCCeEEEEEEe
Q 022869 174 VPYGHAAVELVAGRESAIAQILRTVPNKEYNLTFTI 209 (291)
Q Consensus 174 vP~G~~AVeL~aG~e~~I~Q~~~T~~G~~Y~LTFsl 209 (291)
+|.|.|.|++-...--...++|...+|+...|.+.|
T Consensus 32 l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 789999999954444567788888899999999887
No 11
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=66.86 E-value=89 Score=33.55 Aligned_cols=104 Identities=22% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCCeEEEecCCCC--ceEEEEEeccCCCeEEEEEEeccCCCCCccc---eEEE-EEcCCC-c-EEEEeee-------CCC
Q 022869 176 YGHAAVELVAGRE--SAIAQILRTVPNKEYNLTFTIGDAKNGCHGS---MRVE-AFAGKD-T-VAVPFES-------KGK 240 (291)
Q Consensus 176 ~G~~AVeL~aG~e--~~I~Q~~~T~~G~~Y~LTFslg~A~n~c~g~---l~V~-v~~~~~-~-~~~~y~s-------~G~ 240 (291)
+|.++.=--.|+. ..+.+.|+...++.=+|+|. +--.-... +.|+ +..++. + ...+... .+.
T Consensus 339 ~G~~~w~Sg~Gd~l~~tLt~~vdLp~~s~AtLsfk---~wydIE~dyDy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~ 415 (645)
T PF05547_consen 339 SGSYAWYSGSGDDLNNTLTRSVDLPAASSATLSFK---AWYDIEADYDYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGS 415 (645)
T ss_pred CCceEEEECCCcchhhheeeeeccCCCCCeEEEee---hheecccCCceEEEEEEEcCCCceeEecCccccccCCCCCCC
Confidence 6877666544443 66888887666666778887 32222222 6777 544433 2 2222221 112
Q ss_pred -CCcEEEEEEEEEcc-ceEEEEEEeCCcccccCCCCCccceeeeeEEEE
Q 022869 241 -GGFKSASLKFKAIA-ARTRITFFSTYYHTKINDFGSLCGPVLDEVRVL 287 (291)
Q Consensus 241 -~gw~~~s~~F~A~~-~~T~l~F~S~~~~~~~D~~~s~CGPvIDdV~V~ 287 (291)
++|...+++..|-+ .+.+|.|.=. | |..-..-|-+||||+|.
T Consensus 416 sg~Wv~~~~DLSayAGqtV~LrFrY~---T--D~~v~~~G~~vDdi~v~ 459 (645)
T PF05547_consen 416 SGGWVDASFDLSAYAGQTVQLRFRYV---T--DGGVAGRGFYVDDIRVT 459 (645)
T ss_pred ccceeEeEeccccccCCeEEEEEEEE---c--CCCccCCcEEEEEEEEE
Confidence 56999999999965 5568888753 3 63334568999999996
No 12
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=64.64 E-value=87 Score=26.50 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=54.3
Q ss_pred eEEEEEEeccCCCCCccceEEEEEcCC-CcEEEEeeeCCC--CCcEEEEEEEEEccceEEEEEEeCCcccccCCCCCccc
Q 022869 202 EYNLTFTIGDAKNGCHGSMRVEAFAGK-DTVAVPFESKGK--GGFKSASLKFKAIAARTRITFFSTYYHTKINDFGSLCG 278 (291)
Q Consensus 202 ~Y~LTFslg~A~n~c~g~l~V~v~~~~-~~~~~~y~s~G~--~gw~~~s~~F~A~~~~T~l~F~S~~~~~~~D~~~s~CG 278 (291)
.+-|+|.+=-.+ ...+.|+|.+.... ...+..++..|. ..|....+.+......-+|.|....- . +...-
T Consensus 76 ~~cl~F~Y~m~G-~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~g----~--~~~g~ 148 (161)
T smart00137 76 THCLTFWYYMYG-SGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTRG----K--GHSGY 148 (161)
T ss_pred CeEEEEEEEecC-CCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEEc----C--Cccce
Confidence 566999873332 23445888886322 223445666664 45999999999888889999998621 1 22455
Q ss_pred eeeeeEEEEee
Q 022869 279 PVLDEVRVLSI 289 (291)
Q Consensus 279 PvIDdV~V~~~ 289 (291)
=.||||+|.+-
T Consensus 149 IAiDDI~i~~g 159 (161)
T smart00137 149 IALDDILLSNG 159 (161)
T ss_pred EEEeEEEeecc
Confidence 68999999753
No 13
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=63.44 E-value=12 Score=30.08 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=30.8
Q ss_pred eEeccCCceeEEe---cCcc-----eeeEEeEecCCcEEEEEEecc
Q 022869 2 FFPVSHGVHAIRL---GNEA-----SISQTITVKPGALYALTFGAS 39 (291)
Q Consensus 2 ~~~vp~g~~AvrL---G~~a-----~I~Q~~~~~~g~~YslTF~a~ 39 (291)
++.||.|.|-|++ |... -++..+.+.+|+.|+|.....
T Consensus 37 Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 37 YLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred ceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECC
Confidence 6889999999999 5552 357888999999999987744
No 14
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=53.75 E-value=37 Score=24.78 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=25.8
Q ss_pred eccCCceeEEecCcc--eeeEEeEecCCcEEEEEEe
Q 022869 4 PVSHGVHAIRLGNEA--SISQTITVKPGALYALTFG 37 (291)
Q Consensus 4 ~vp~g~~AvrLG~~a--~I~Q~~~~~~g~~YslTF~ 37 (291)
.+|.|.|-|++=.++ ...++|.+.+|....|.+.
T Consensus 31 ~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 31 DLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred ecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 388999999984433 5778888888888877765
No 15
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=49.90 E-value=39 Score=30.68 Aligned_cols=53 Identities=34% Similarity=0.518 Sum_probs=32.9
Q ss_pred eEeccCCceeEEe--------cCcceeeEEe-----EecCCcEEEEEEecccccccccceeEEeCC
Q 022869 2 FFPVSHGVHAIRL--------GNEASISQTI-----TVKPGALYALTFGASRTCAQDEVLRVSVPP 54 (291)
Q Consensus 2 ~~~vp~g~~AvrL--------G~~a~I~Q~~-----~~~~g~~YslTF~a~rtCaq~e~l~vsv~~ 54 (291)
+|.+|++...|.+ |.+-+-.+++ .+++|.+|.|||.....=...-.|.|+|.+
T Consensus 155 Yf~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~~~~~g~~~i~I~vd~ 220 (235)
T PF14900_consen 155 YFKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPSDSSAGSIGITITVDD 220 (235)
T ss_pred EEECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeeccCCCCeeEEEEEEeC
Confidence 6777887776665 4222344444 689999999999987333333345555543
No 16
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=41.87 E-value=1.7e+02 Score=23.07 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=59.5
Q ss_pred CCeEEEecCCCCceEEEEEeccCCCeEEEEEEeccCCCCCccceEEEEEcCC-Cc-EEEEeeeCCC-CCcEEEEEEEEEc
Q 022869 177 GHAAVELVAGRESAIAQILRTVPNKEYNLTFTIGDAKNGCHGSMRVEAFAGK-DT-VAVPFESKGK-GGFKSASLKFKAI 253 (291)
Q Consensus 177 G~~AVeL~aG~e~~I~Q~~~T~~G~~Y~LTFslg~A~n~c~g~l~V~v~~~~-~~-~~~~y~s~G~-~gw~~~s~~F~A~ 253 (291)
|.+.+-.+...+..-...|....+-.|+|++.++..+.. +.+.|.+-... .. -++.+..+|. ..|+..+...+..
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~--~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l~ 98 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGG--GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKLP 98 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSS--EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEeeCCCceEEEEEEEECCCCC--cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEeeC
Confidence 666676644444444556888889999999998654444 45666663311 22 3555654442 2355565566555
Q ss_pred cceEEEEEEeCCcccccCCCCCccceeeeeEEEE
Q 022869 254 AARTRITFFSTYYHTKINDFGSLCGPVLDEVRVL 287 (291)
Q Consensus 254 ~~~T~l~F~S~~~~~~~D~~~s~CGPvIDdV~V~ 287 (291)
.-.=+|.|.... + . .|.+=||.+.+.
T Consensus 99 ~G~h~i~l~~~~-----~--~-~~~~niD~~~f~ 124 (125)
T PF03422_consen 99 AGKHTIYLVFNG-----G--D-GWAFNIDYFQFT 124 (125)
T ss_dssp SEEEEEEEEESS-----S--S-SB-EEEEEEEEE
T ss_pred CCeeEEEEEEEC-----C--C-CceEEeEEEEEE
Confidence 555566666642 1 1 277889988774
No 17
>PF07987 DUF1775: Domain of unkown function (DUF1775); InterPro: IPR012533 GLE1 is an essential nuclear export factor involved in RNA export.; PDB: 3ESM_A.
Probab=41.42 E-value=79 Score=27.57 Aligned_cols=28 Identities=32% Similarity=0.648 Sum_probs=15.7
Q ss_pred ccCCCeEEEEEEeccCCCCCccc----eEEEEEcC
Q 022869 197 TVPNKEYNLTFTIGDAKNGCHGS----MRVEAFAG 227 (291)
Q Consensus 197 T~~G~~Y~LTFslg~A~n~c~g~----l~V~v~~~ 227 (291)
..+|++|+++|.+ .+.|.++ ++|.+..+
T Consensus 9 a~~G~~~~~tf~V---p~e~d~a~Tt~v~v~lP~g 40 (145)
T PF07987_consen 9 AAAGSYYKLTFRV---PHECDGAATTKVRVTLPEG 40 (145)
T ss_dssp -BTT--EEEEEEE---E---SS--EEEEEEEEEE-
T ss_pred cCCCceEEEEEEe---cCCCCCCCceEEEEECCCc
Confidence 5689999999995 5688874 66666655
No 18
>cd03516 Link_domain_CD44_like This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding domain of CD44 is an extended domain comprised of a single link module flanked with N-and C- extensions. These extensions are essential for folding and for functional activity. This group also contains the cell surface retention sequence (CRS) binding protein-1 (CRSBP-1) and lymph vessel endothelial receptor-1 (LYVE-1). CRSBP-1 is a cell surface binding protein for the CRS motif of PDGF-BB (platelet-derived growth factor-BB) and is responsible for the cell surface retention of PDGF-BB in SSV-transformed cells. CRSBP-1 may play a role in autocrine regulation of cell growth mediated by CRS containing growth regulators. LYVE-1 is preferentially expressed on the lymphatic endothelium and is used as a molecular marke
Probab=33.51 E-value=28 Score=30.62 Aligned_cols=79 Identities=20% Similarity=0.158 Sum_probs=43.7
Q ss_pred eEecCCcEEEEEEe-cccccccccceeEE-------------------eCCCCCCcceeeee---ecCC-CeEEEEEEec
Q 022869 24 ITVKPGALYALTFG-ASRTCAQDEVLRVS-------------------VPPQSGDLPLQTLY---DING-DTYAWGFRAK 79 (291)
Q Consensus 24 ~~~~~g~~YslTF~-a~rtCaq~e~l~vs-------------------v~~~~~~~~~qt~Y---~~~g-dsy~~~f~a~ 79 (291)
+-+.+...|+|+|. |-+-|.....---| +.+.+-.+||+..- +.++ .+|.|..+ .
T Consensus 9 Fh~~~~grY~lnf~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~aGWL~dgsvryPi~~Pr~~CG~~~~gv~~~~~~-~ 87 (144)
T cd03516 9 FLVEKNGRYSLNFTEAKEACRALGLTLASKAQVETALKFGFETCRYGWVEDGFVVIPRIDPNPLCGKNGTGVYILNSN-L 87 (144)
T ss_pred EEeccCCcccCCHHHHHHHHHHcCCeeCCHHHHHHHHHcChhccCcceeeCCEEEeecccCcccccCCCceEEEeCCC-C
Confidence 44555689999999 77788762211111 11233455664433 3344 55655543 3
Q ss_pred CceEEEEEeCCCCCCCCCccccee
Q 022869 80 TNIVTVTFHNPGVQEDPACGPLID 103 (291)
Q Consensus 80 ~~~v~l~~~n~~~~~d~~Cgp~id 103 (291)
.+.-.+==+|..-.+.+.|+|+|+
T Consensus 88 ~~~yDaYCy~~sd~~~~~c~~~~~ 111 (144)
T cd03516 88 SSRYDAYCYNSSDTWINSCLPEIL 111 (144)
T ss_pred ccccceEEeccCCCccccccceEE
Confidence 333334344555556888999987
No 19
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=33.49 E-value=87 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=20.3
Q ss_pred eccCCCeEEEEEEeccCCCCCccc----eEEEEEc
Q 022869 196 RTVPNKEYNLTFTIGDAKNGCHGS----MRVEAFA 226 (291)
Q Consensus 196 ~T~~G~~Y~LTFslg~A~n~c~g~----l~V~v~~ 226 (291)
....|++|+|+|. ..+.|.++ ++|.+..
T Consensus 11 ~a~aGs~~~~tfr---VPhecdg~~Ttkv~V~lP~ 42 (152)
T cd08545 11 EAAAGSYYKLTFR---VPHGCDGAATTKVRVKLPE 42 (152)
T ss_pred CCCCCceEEEEEE---ccCCCCCCCceEEEEEcCC
Confidence 3466999999999 56788875 5555543
No 20
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=30.41 E-value=76 Score=25.84 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=31.1
Q ss_pred ccCCCCCeEEEecCCCCceEEEEE-----eccCCCeEEEEEEeccCCCCCccc-eEEE
Q 022869 172 FNVPYGHAAVELVAGRESAIAQIL-----RTVPNKEYNLTFTIGDAKNGCHGS-MRVE 223 (291)
Q Consensus 172 ~~vP~G~~AVeL~aG~e~~I~Q~~-----~T~~G~~Y~LTFslg~A~n~c~g~-l~V~ 223 (291)
|..-.|+-+||| +|.-+...+.| ..++|+.|.+.|-. |.|--.++ ++++
T Consensus 31 WVFIn~kLv~Dl-GG~H~~~~~sV~l~~lgl~~g~~Y~~d~F~--~ERht~~S~~~i~ 85 (90)
T TIGR02148 31 WVFINNKLVVDI-GGQHPAVPGAVDLDTLGLKEGKTYPFDIFY--CERHTTGSNFRIR 85 (90)
T ss_pred EEEECCEEEEEc-cCcCCCcccEEEhhhcCCccCcEeeEEEEE--EeecCCCCCEEEE
Confidence 556678888888 34333333444 46899999999987 44544443 5544
No 21
>PF07675 Cleaved_Adhesin: Cleaved Adhesin Domain; InterPro: IPR011628 This conserved region is found in a group of haemagglutinins and peptidases, e.g. IPR001769 from INTERPRO, that, in Porphyromonas gingivalis (Bacteroides gingivalis), form components of the major extracellular virulence complex RgpA-Kgp - a mixture of proteinases and adhesins []. These domains are cleaved from the original polyprotein and form part of the adhesins [].; PDB: 3KM5_B 3M1H_A.
Probab=28.72 E-value=3.8e+02 Score=23.12 Aligned_cols=83 Identities=14% Similarity=0.189 Sum_probs=41.0
Q ss_pred EEEEEeccCCCeEEEEEEeccCCCCCcc-ceEEEEEcCC---CcEEEEeee-------------CC--CCCcEEEEEEEE
Q 022869 191 IAQILRTVPNKEYNLTFTIGDAKNGCHG-SMRVEAFAGK---DTVAVPFES-------------KG--KGGFKSASLKFK 251 (291)
Q Consensus 191 I~Q~~~T~~G~~Y~LTFslg~A~n~c~g-~l~V~v~~~~---~~~~~~y~s-------------~G--~~gw~~~s~~F~ 251 (291)
|+..| +|. .+|+|.+......+.. ...|.+...+ ..++...+. +| .+.|+.+.+++.
T Consensus 66 ISP~l---~g~-~~i~f~v~~~~~~~~~E~y~V~~Sttg~~~~~f~~i~e~t~~~~~~~~~~~~~~~~~~~w~~~~v~Lp 141 (167)
T PF07675_consen 66 ISPQL---SGA-QTISFWVKSQDASYGPEHYEVLYSTTGNNIADFTTILEETITANTFTNAEKIEGKTQGEWTERTVDLP 141 (167)
T ss_dssp E-S-----TT--EEEEEEEEECTTTC---EEEEEEESS-SSGGGEEECEEEE---SS-SSSSSSSSS-----EEEEEEE-
T ss_pred EecCc---CCC-CEEEEEEEeccCCCCCceEEEEEecCCCChhheEEeeeeeecccccccccccccccCccEEEEEEeCC
Confidence 44445 674 6999998664444333 2666665322 224433211 11 246999999996
Q ss_pred EccceEEEEEEeCCcccccCCCCCccceeeeeEEE
Q 022869 252 AIAARTRITFFSTYYHTKINDFGSLCGPVLDEVRV 286 (291)
Q Consensus 252 A~~~~T~l~F~S~~~~~~~D~~~s~CGPvIDdV~V 286 (291)
+-.. -+.|+.. ...| ...=.||||+|
T Consensus 142 ~gt~--Y~afrh~---~~td----~~~l~iDDV~v 167 (167)
T PF07675_consen 142 AGTK--YFAFRHY---NSTD----AFYLMIDDVTV 167 (167)
T ss_dssp TT----EEEEEEE---S--S----S-EEEEEEEEE
T ss_pred CCCc--EEEEEec---cCCC----ceEEEeccEEC
Confidence 5444 8999753 2235 34567999987
No 22
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=26.77 E-value=77 Score=28.73 Aligned_cols=36 Identities=22% Similarity=0.553 Sum_probs=29.4
Q ss_pred eEeccCCceeEEecCcceeeEEeEecCCcEEEEEEeccc
Q 022869 2 FFPVSHGVHAIRLGNEASISQTITVKPGALYALTFGASR 40 (291)
Q Consensus 2 ~~~vp~g~~AvrLG~~a~I~Q~~~~~~g~~YslTF~a~r 40 (291)
++.+|.|.|.++.|... ..+.+.+|.+|.|-.....
T Consensus 62 ~~~~~~G~~~~~~ggk~---~~~~v~~~~f~TvV~~~~g 97 (181)
T PF11182_consen 62 YFFVPPGGYTLQVGGKQ---AEVDVAPGEFYTVVLRPGG 97 (181)
T ss_pred eeecCCCceeEeecCcc---cceEecCCceEEEEEcCCC
Confidence 56789999999997766 3577899999999888654
No 23
>KOG3033 consensus Predicted PhzC/PhzF-type epimerase [General function prediction only]
Probab=26.51 E-value=59 Score=31.45 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=32.4
Q ss_pred cccccccccceeEEeC---CCCCCcceeeeeecCCCeEEEEEEecCceEEEEEeCCCCCCCCCccc
Q 022869 38 ASRTCAQDEVLRVSVP---PQSGDLPLQTLYDINGDTYAWGFRAKTNIVTVTFHNPGVQEDPACGP 100 (291)
Q Consensus 38 a~rtCaq~e~l~vsv~---~~~~~~~~qt~Y~~~gdsy~~~f~a~~~~v~l~~~n~~~~~d~~Cgp 100 (291)
-.-||-..|..++.+. -.....=+||.-++.|..|.|+-+.=...+ |+.|||+||-
T Consensus 170 ~~~t~~elep~~~d~~di~~~p~~~~~v~~~g~~g~~~dy~~RyFAP~~-------GVnEDPvtGS 228 (286)
T KOG3033|consen 170 PWETVFELEPNRIDISDISTCPNNGMIVTFAGSSGSPYDYESRYFAPWV-------GVNEDPVTGS 228 (286)
T ss_pred CcceeeecChhhhhhhhhhcCCCCceEEEEecCCCCCCceEeeeccccc-------cccCCCCCCc
Confidence 3344544444333322 233444578999999855555444433333 6699999985
No 24
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=26.49 E-value=95 Score=24.84 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=32.8
Q ss_pred eEEEEeC-CCccCCCCCeEEEe-cCCCCc-----eEEEEEeccCCCeEEEEEE
Q 022869 163 AVKFIDA-KHFNVPYGHAAVEL-VAGRES-----AIAQILRTVPNKEYNLTFT 208 (291)
Q Consensus 163 ~V~YI~s-~~~~vP~G~~AVeL-~aG~e~-----~I~Q~~~T~~G~~Y~LTFs 208 (291)
.|.|=+. +...+|.|.+-|++ .+|... -+...+...+|+.|+|--.
T Consensus 28 ~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~ 80 (122)
T PF14344_consen 28 NVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAV 80 (122)
T ss_pred cCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEE
Confidence 5555432 34788999999999 345542 3568888999999998655
No 25
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=25.15 E-value=3.1e+02 Score=24.76 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=24.6
Q ss_pred ccCCCCCeEEEe------cCCCCceEEEEE-----eccCCCeEEEEEEec
Q 022869 172 FNVPYGHAAVEL------VAGRESAIAQIL-----RTVPNKEYNLTFTIG 210 (291)
Q Consensus 172 ~~vP~G~~AVeL------~aG~e~~I~Q~~-----~T~~G~~Y~LTFslg 210 (291)
|.+|++...|.+ ..|.+-.-.+++ ...+|.+|.|+|.+.
T Consensus 156 f~~~~~~~~l~~~~~~t~~~g~~~~~~~~~~~~~~~v~~~~~y~lt~~~~ 205 (235)
T PF14900_consen 156 FKAGEGGETLTLTLSGTNKDGESVSKEQTINKDISNVKAGDHYKLTFDPS 205 (235)
T ss_pred EECCCCCceEEEEEEEEecCCcccccceeEeeccCcccCceEEEEEEeec
Confidence 666666655554 223221233343 688899999999986
No 26
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=25.06 E-value=2.4e+02 Score=25.33 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=36.8
Q ss_pred eEEEEEcCCCc-E-EEEee-----eCCCCCcEEEEEEEEEccceE-EEEEEeCCcccccCCCCCccceeeeeEEEE
Q 022869 220 MRVEAFAGKDT-V-AVPFE-----SKGKGGFKSASLKFKAIAART-RITFFSTYYHTKINDFGSLCGPVLDEVRVL 287 (291)
Q Consensus 220 l~V~v~~~~~~-~-~~~y~-----s~G~~gw~~~s~~F~A~~~~T-~l~F~S~~~~~~~D~~~s~CGPvIDdV~V~ 287 (291)
|.|+...+... + ++... ......|...+..|+-=..-. -|.|.+.+-.++ --...+|+-+-|-+|.
T Consensus 108 l~V~Lld~~~~vi~~f~~~~~~~~~~~~~~W~qvsh~F~~Yg~GVR~I~f~h~GkD~~--fw~G~yG~rvt~ssV~ 181 (184)
T PF04300_consen 108 LHVQLLDANKNVIAEFKPGPVPIPQWTDNPWKQVSHTFSNYGPGVRFIRFEHGGKDTQ--FWAGHYGSRVTNSSVI 181 (184)
T ss_dssp EEEEEEETTTEEEEEEEEESEEE-T--T--EEEEEEEE-S--TTEEEEEEEEEEEESS----SSS-SEEEEEEEEE
T ss_pred EEEEECcCCCcEEEEEecccccccccCCCCcEEEEEEEeCCCCCCEEEEEEEeeeccc--cCCcccCCeEeceEEE
Confidence 66777655544 2 22211 112356999999998877666 477887655442 1245899999998875
No 27
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.29 E-value=3.3e+02 Score=20.91 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=28.3
Q ss_pred eEEecCcceeeEEeEecCC-----cEEEEEEecccccccccceeEEeCCCCCCcceeeeeecCCCeEEEEE
Q 022869 11 AIRLGNEASISQTITVKPG-----ALYALTFGASRTCAQDEVLRVSVPPQSGDLPLQTLYDINGDTYAWGF 76 (291)
Q Consensus 11 AvrLG~~a~I~Q~~~~~~g-----~~YslTF~a~rtCaq~e~l~vsv~~~~~~~~~qt~Y~~~gdsy~~~f 76 (291)
-|.|-|.++-.+.|.|.+. ....+|..|+.+ ..+...+....|-..+ ++++.+| |.+.|
T Consensus 23 ~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~v~ag~~----~~~~w~l~~s~gwYDl-~v~~~~~--F~rr~ 86 (89)
T PF05506_consen 23 RLTLSNPGSAAVTFTVYDNAYGGGGPWTYTVAAGQT----VSLTWPLAASGGWYDL-TVTGPNG--FLRRF 86 (89)
T ss_pred EEEEEeCCCCcEEEEEEeCCcCCCCCEEEEECCCCE----EEEEEeecCCCCcEEE-EEEcCCC--EEEEe
Confidence 4455666666666766652 233334444332 1222333345555555 5555444 44444
No 28
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=23.14 E-value=4.2e+02 Score=21.60 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=19.0
Q ss_pred EEEEEEEEccceEEEEEEeCCc
Q 022869 245 SASLKFKAIAARTRITFFSTYY 266 (291)
Q Consensus 245 ~~s~~F~A~~~~T~l~F~S~~~ 266 (291)
.-.+.|.+.+..|+|+|...+.
T Consensus 99 ~v~~~~~~~~~~T~lt~~~~~~ 120 (146)
T cd08895 99 TMTWTLSPVSGGTDVTIVQSGI 120 (146)
T ss_pred EEEEEEEecCCCEEEEEEEeCC
Confidence 6789999999999999998653
No 29
>PF11280 DUF3081: Protein of unknown function (DUF3081); InterPro: IPR021432 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.11 E-value=1e+02 Score=24.48 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.7
Q ss_pred CCcceeeeeecCC-CeEEEEEEecCceEEEEEeCC
Q 022869 57 GDLPLQTLYDING-DTYAWGFRAKTNIVTVTFHNP 90 (291)
Q Consensus 57 ~~~~~qt~Y~~~g-dsy~~~f~a~~~~v~l~~~n~ 90 (291)
+..-++=++...+ |.|...+....=.++|.|||.
T Consensus 23 ~~y~l~GI~A~~D~DGYtv~L~~~~VtLtl~FHnt 57 (79)
T PF11280_consen 23 GGYELEGITAFSDFDGYTVYLEDNGVTLTLGFHNT 57 (79)
T ss_pred CcEEEccEEEEecCCCcEEEEeCCCEEEEEEeccc
Confidence 3445666778888 999999999999999999996
No 30
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=22.72 E-value=4e+02 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=16.2
Q ss_pred EeccCCCeEEEEEEeccCCCCCccceEEEE
Q 022869 195 LRTVPNKEYNLTFTIGDAKNGCHGSMRVEA 224 (291)
Q Consensus 195 ~~T~~G~~Y~LTFslg~A~n~c~g~l~V~v 224 (291)
|.......|++++.++.....+ .+.|.+
T Consensus 47 vd~~~~g~~~i~~~~as~~~~~--~i~v~~ 74 (129)
T smart00606 47 VDFGSSGAYTFTARVASGNAGG--SIELRL 74 (129)
T ss_pred EecCCCCceEEEEEEeCCCCCc--eEEEEE
Confidence 5544457788888875544333 344444
No 31
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.79 E-value=1.2e+02 Score=25.95 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=37.2
Q ss_pred cceecCCccccCCCCCCCeEEeecceEEEEeCCCccCCCCCeEEEe--cCCCCceEE
Q 022869 138 NGVLLPPRQEDLTSPLPGWIIESLKAVKFIDAKHFNVPYGHAAVEL--VAGRESAIA 192 (291)
Q Consensus 138 ~gvl~p~~~~~~~s~LpGW~i~g~~~V~YI~s~~~~vP~G~~AVeL--~aG~e~~I~ 192 (291)
.-|+-|...+.++++=.+=++.|...|..++ ..|.|++||+| .-|.+++|.
T Consensus 34 LRv~sPsAEvqghgp~q~v~v~gkr~V~i~~----i~p~GnYavri~FdDgHDsGiy 86 (120)
T COG3536 34 LRVLSPSAEVQGHGPGQRVLVPGKRNVQIRD----IEPVGNYAVRILFDDGHDSGIY 86 (120)
T ss_pred HHhcCchHHhcccCCCCceeeeccccceEEE----eEecCceEEEEEecCCcccCcc
Confidence 3456666677788876677787777888887 45899999999 346666663
No 32
>PLN03150 hypothetical protein; Provisional
Probab=21.16 E-value=7.2e+02 Score=26.10 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=45.5
Q ss_pred EEeccCCCeE--EEEEEeccCCCCCccc-eEEEEEcCC---CcEEEEeeeCCCCCcEEEEEEEEEccceEEEEEEeCCcc
Q 022869 194 ILRTVPNKEY--NLTFTIGDAKNGCHGS-MRVEAFAGK---DTVAVPFESKGKGGFKSASLKFKAIAARTRITFFSTYYH 267 (291)
Q Consensus 194 ~~~T~~G~~Y--~LTFslg~A~n~c~g~-l~V~v~~~~---~~~~~~y~s~G~~gw~~~s~~F~A~~~~T~l~F~S~~~~ 267 (291)
+|.++++..| |++|..|.-.+.-..+ +.|++ +. .++...++... .-..+++-|.++++...|.|.+.+.
T Consensus 86 ~~~~~~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~--~~~~~~tv~~~~~~~~--~~v~~E~i~~~~~~~l~vcf~~~~~- 160 (623)
T PLN03150 86 NINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSV--EGTQISSLKSGWSSHD--EQVFAEALVFLTDGSASICFHSTGH- 160 (623)
T ss_pred EeeecCCCcEEEEEEeecCCcCCCCCCCceEEEE--CcEEEEEEecCcccCC--CcEEEEEEEEecCCcEEEEEecCCC-
Confidence 4666666667 6677766422111122 55555 33 22222222111 1244577788889999999988531
Q ss_pred cccCCCCCccceeeeeEEEEeec
Q 022869 268 TKINDFGSLCGPVLDEVRVLSIR 290 (291)
Q Consensus 268 ~~~D~~~s~CGPvIDdV~V~~~~ 290 (291)
+ -|+|-.+.|+++|
T Consensus 161 ------~---~pFIs~iEv~~l~ 174 (623)
T PLN03150 161 ------G---DPAILSIEILQVD 174 (623)
T ss_pred ------C---CCceeEEEEEEcC
Confidence 1 1788777777664
Done!