Query 022870
Match_columns 291
No_of_seqs 499 out of 1267
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 06:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.2E-42 9.2E-47 255.5 21.1 268 8-290 105-447 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.5E-41 1.6E-45 251.4 17.1 245 9-280 208-458 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-39 3.8E-44 244.1 19.7 250 15-290 172-426 (459)
4 KOG0271 Notchless-like WD40 re 100.0 3.4E-39 7.5E-44 240.0 20.6 246 8-280 190-479 (480)
5 KOG0263 Transcription initiati 100.0 4.3E-39 9.4E-44 259.1 22.0 211 9-285 442-652 (707)
6 KOG0279 G protein beta subunit 100.0 1.1E-38 2.3E-43 228.0 21.5 214 8-289 53-269 (315)
7 KOG0315 G-protein beta subunit 100.0 1.6E-36 3.5E-41 213.7 22.8 222 8-288 73-294 (311)
8 KOG0279 G protein beta subunit 100.0 1.7E-36 3.6E-41 216.8 22.9 219 9-290 6-230 (315)
9 KOG0286 G-protein beta subunit 100.0 3.3E-36 7.1E-41 216.7 23.8 244 9-280 46-343 (343)
10 KOG0273 Beta-transducin family 100.0 8.8E-36 1.9E-40 227.2 20.4 244 18-289 235-489 (524)
11 KOG0285 Pleiotropic regulator 100.0 1.4E-35 3E-40 219.2 19.0 216 6-289 139-355 (460)
12 KOG0265 U5 snRNP-specific prot 100.0 6.4E-34 1.4E-38 205.6 22.0 257 9-290 38-304 (338)
13 KOG0316 Conserved WD40 repeat- 100.0 5.7E-34 1.2E-38 199.5 21.1 255 5-289 4-264 (307)
14 KOG0295 WD40 repeat-containing 100.0 1.9E-34 4.1E-39 213.3 17.9 257 9-290 99-372 (406)
15 KOG0276 Vesicle coat complex C 100.0 1.9E-34 4.2E-39 227.2 18.9 256 11-290 6-265 (794)
16 KOG0293 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 214.6 18.8 259 3-284 209-515 (519)
17 KOG0318 WD40 repeat stress pro 100.0 5.9E-33 1.3E-37 214.6 24.5 267 6-287 178-565 (603)
18 KOG0282 mRNA splicing factor [ 100.0 6.1E-35 1.3E-39 223.2 13.5 256 7-280 203-503 (503)
19 KOG0263 Transcription initiati 100.0 5.7E-34 1.2E-38 229.8 18.6 221 3-289 363-614 (707)
20 KOG0266 WD40 repeat-containing 100.0 7.3E-33 1.6E-37 226.8 23.6 216 10-289 195-416 (456)
21 KOG0296 Angio-associated migra 100.0 7.5E-32 1.6E-36 199.7 25.8 257 9-282 55-398 (399)
22 KOG0295 WD40 repeat-containing 100.0 1.7E-32 3.7E-37 203.1 21.0 222 9-281 184-405 (406)
23 KOG0291 WD40-repeat-containing 100.0 3.8E-32 8.2E-37 218.4 23.5 213 11-288 343-556 (893)
24 KOG0281 Beta-TrCP (transducin 100.0 4.3E-34 9.4E-39 210.9 11.2 202 9-285 228-431 (499)
25 KOG0315 G-protein beta subunit 100.0 1.1E-31 2.3E-36 189.5 22.0 213 6-284 28-247 (311)
26 PTZ00421 coronin; Provisional 100.0 2.1E-31 4.5E-36 217.7 27.0 214 13-289 70-297 (493)
27 KOG0284 Polyadenylation factor 100.0 3.7E-33 8.1E-38 209.4 13.2 244 12-282 132-380 (464)
28 PTZ00420 coronin; Provisional 100.0 1.1E-30 2.3E-35 214.6 28.7 217 9-286 65-297 (568)
29 KOG0265 U5 snRNP-specific prot 100.0 3.6E-31 7.8E-36 191.5 22.5 245 11-281 83-337 (338)
30 KOG0268 Sof1-like rRNA process 100.0 6.3E-33 1.4E-37 205.4 12.9 242 11-285 59-305 (433)
31 KOG0266 WD40 repeat-containing 100.0 3.9E-31 8.5E-36 216.6 23.6 219 5-282 233-454 (456)
32 cd00200 WD40 WD40 domain, foun 100.0 2.9E-30 6.2E-35 201.1 27.2 251 11-290 2-257 (289)
33 KOG0273 Beta-transducin family 100.0 1.3E-30 2.8E-35 199.1 23.9 218 7-282 265-523 (524)
34 KOG0284 Polyadenylation factor 100.0 1.6E-32 3.5E-37 206.0 12.4 205 17-287 95-299 (464)
35 KOG0292 Vesicle coat complex C 100.0 3E-31 6.5E-36 216.9 19.3 225 9-290 42-288 (1202)
36 KOG0645 WD40 repeat protein [G 100.0 6.5E-30 1.4E-34 182.5 22.7 210 9-281 5-224 (312)
37 KOG0277 Peroxisomal targeting 100.0 2.9E-31 6.3E-36 187.8 15.6 216 4-281 90-308 (311)
38 KOG0278 Serine/threonine kinas 100.0 1.2E-31 2.5E-36 189.6 13.3 255 1-286 42-301 (334)
39 KOG0316 Conserved WD40 repeat- 100.0 2.6E-30 5.6E-35 181.2 19.8 252 4-281 45-298 (307)
40 KOG0640 mRNA cleavage stimulat 100.0 2.2E-30 4.7E-35 188.6 18.8 218 11-289 105-342 (430)
41 KOG1407 WD40 repeat protein [F 100.0 2.3E-30 4.9E-35 184.0 18.2 251 12-290 14-269 (313)
42 KOG0643 Translation initiation 100.0 9.4E-30 2E-34 181.5 20.5 214 13-290 5-228 (327)
43 KOG0645 WD40 repeat protein [G 100.0 3.2E-29 6.9E-34 179.0 22.5 237 16-282 59-311 (312)
44 KOG0291 WD40-repeat-containing 100.0 1.5E-29 3.3E-34 203.6 21.3 211 9-284 298-510 (893)
45 KOG0283 WD40 repeat-containing 100.0 1.6E-29 3.5E-34 205.7 19.9 219 7-284 358-578 (712)
46 KOG0285 Pleiotropic regulator 100.0 7.8E-30 1.7E-34 188.9 16.4 215 7-289 182-396 (460)
47 KOG0277 Peroxisomal targeting 100.0 2E-29 4.3E-34 178.6 17.7 207 17-285 59-268 (311)
48 KOG0281 Beta-TrCP (transducin 100.0 9.9E-31 2.2E-35 193.2 11.6 197 17-289 196-395 (499)
49 cd00200 WD40 WD40 domain, foun 100.0 4.1E-28 8.8E-33 188.9 26.7 243 9-280 42-289 (289)
50 PLN00181 protein SPA1-RELATED; 100.0 3.2E-28 6.8E-33 213.4 28.9 246 14-285 479-741 (793)
51 KOG0274 Cdc4 and related F-box 100.0 2.2E-29 4.8E-34 206.2 19.6 211 7-290 237-449 (537)
52 KOG0283 WD40 repeat-containing 100.0 1E-29 2.2E-34 206.9 16.8 210 12-289 260-539 (712)
53 KOG0313 Microtubule binding pr 100.0 9.8E-29 2.1E-33 184.2 20.3 257 6-289 94-384 (423)
54 PLN00181 protein SPA1-RELATED; 100.0 4.7E-28 1E-32 212.3 28.2 242 11-281 526-792 (793)
55 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-27 2.4E-32 174.8 25.0 248 9-285 5-306 (311)
56 KOG0319 WD40-repeat-containing 100.0 9.2E-29 2E-33 198.5 20.9 257 9-290 314-585 (775)
57 KOG0286 G-protein beta subunit 100.0 3.8E-28 8.1E-33 175.4 22.0 206 53-288 48-265 (343)
58 KOG0643 Translation initiation 100.0 1.7E-28 3.7E-33 175.1 19.5 218 7-285 41-320 (327)
59 KOG0313 Microtubule binding pr 100.0 2.3E-28 4.9E-33 182.3 20.7 253 7-282 133-418 (423)
60 KOG0294 WD40 repeat-containing 100.0 1.7E-28 3.8E-33 178.8 19.5 245 9-284 34-283 (362)
61 KOG0319 WD40-repeat-containing 100.0 2.2E-28 4.7E-33 196.4 19.9 248 11-282 358-619 (775)
62 KOG0318 WD40 repeat stress pro 100.0 4.6E-27 9.9E-32 182.3 26.4 252 9-286 50-354 (603)
63 KOG0275 Conserved WD40 repeat- 100.0 2.9E-28 6.2E-33 178.9 16.7 256 9-290 203-475 (508)
64 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.3E-33 185.8 14.6 246 9-280 210-459 (459)
65 KOG0264 Nucleosome remodeling 100.0 4.6E-28 1E-32 184.4 17.5 209 16-283 122-348 (422)
66 KOG0292 Vesicle coat complex C 100.0 3E-28 6.5E-33 199.5 17.4 210 12-286 3-240 (1202)
67 KOG0264 Nucleosome remodeling 100.0 1.7E-27 3.6E-32 181.4 20.1 215 9-283 168-405 (422)
68 KOG0772 Uncharacterized conser 100.0 8E-28 1.7E-32 186.1 18.5 229 6-285 155-397 (641)
69 KOG0288 WD40 repeat protein Ti 100.0 3.1E-28 6.8E-33 183.4 14.4 256 5-290 162-425 (459)
70 KOG0310 Conserved WD40 repeat- 100.0 2E-27 4.4E-32 182.5 19.0 245 18-290 26-276 (487)
71 KOG4283 Transcription-coupled 100.0 1.9E-27 4.2E-32 172.2 17.3 211 14-286 39-280 (397)
72 KOG0646 WD40 repeat protein [G 100.0 2.2E-27 4.8E-32 181.3 18.1 213 18-290 81-315 (476)
73 KOG0305 Anaphase promoting com 100.0 1.8E-26 4E-31 183.0 23.6 241 17-284 216-463 (484)
74 KOG0276 Vesicle coat complex C 100.0 5.6E-27 1.2E-31 185.4 20.5 246 9-278 46-295 (794)
75 KOG0306 WD40-repeat-containing 100.0 8.8E-27 1.9E-31 187.8 21.6 250 12-287 367-669 (888)
76 KOG0289 mRNA splicing factor [ 100.0 6.5E-27 1.4E-31 177.4 19.0 209 8-280 251-460 (506)
77 KOG0274 Cdc4 and related F-box 100.0 8.9E-27 1.9E-31 191.0 21.2 205 12-289 201-408 (537)
78 KOG0300 WD40 repeat-containing 100.0 2.3E-27 5E-32 173.7 14.5 245 9-285 139-389 (481)
79 PTZ00420 coronin; Provisional 100.0 1.3E-25 2.8E-30 184.8 26.1 191 36-288 50-255 (568)
80 KOG0289 mRNA splicing factor [ 100.0 2.2E-26 4.8E-31 174.6 19.2 208 19-290 220-427 (506)
81 KOG0640 mRNA cleavage stimulat 100.0 1.3E-26 2.7E-31 169.2 16.2 256 10-282 164-426 (430)
82 KOG0308 Conserved WD40 repeat- 99.9 4.2E-27 9.1E-32 186.7 14.7 221 17-291 20-252 (735)
83 KOG0973 Histone transcription 99.9 5.8E-26 1.3E-30 189.8 21.8 258 8-286 59-359 (942)
84 KOG0641 WD40 repeat protein [G 99.9 7.8E-25 1.7E-29 153.3 23.9 216 9-283 80-304 (350)
85 KOG0269 WD40 repeat-containing 99.9 2.7E-27 5.9E-32 191.1 12.8 240 21-282 90-340 (839)
86 PTZ00421 coronin; Provisional 99.9 4E-25 8.6E-30 181.0 25.7 205 17-285 19-248 (493)
87 KOG0282 mRNA splicing factor [ 99.9 4.7E-27 1E-31 180.3 12.8 204 8-237 248-503 (503)
88 KOG0322 G-protein beta subunit 99.9 2E-26 4.3E-31 164.4 15.0 264 5-281 1-322 (323)
89 KOG0306 WD40-repeat-containing 99.9 1.1E-25 2.4E-30 181.5 20.8 247 9-282 98-484 (888)
90 KOG0647 mRNA export protein (c 99.9 9.9E-26 2.2E-30 163.6 18.3 222 15-288 24-287 (347)
91 KOG0310 Conserved WD40 repeat- 99.9 1.6E-25 3.6E-30 172.1 19.6 207 10-282 102-309 (487)
92 KOG1407 WD40 repeat protein [F 99.9 9.4E-25 2E-29 155.6 21.7 238 13-282 59-311 (313)
93 KOG0302 Ribosome Assembly prot 99.9 1.5E-25 3.3E-30 167.2 18.4 212 10-283 143-379 (440)
94 KOG1332 Vesicle coat complex C 99.9 5E-26 1.1E-30 160.6 14.9 217 13-283 6-242 (299)
95 KOG0299 U3 snoRNP-associated p 99.9 7.6E-25 1.6E-29 167.3 22.1 246 11-284 135-412 (479)
96 KOG0772 Uncharacterized conser 99.9 4E-26 8.7E-31 176.8 15.3 206 13-279 263-484 (641)
97 KOG0308 Conserved WD40 repeat- 99.9 1.9E-26 4.1E-31 183.1 13.8 220 10-284 65-287 (735)
98 KOG0299 U3 snoRNP-associated p 99.9 5.9E-25 1.3E-29 167.9 20.8 248 15-281 199-455 (479)
99 KOG1332 Vesicle coat complex C 99.9 1.2E-24 2.6E-29 153.7 20.1 232 8-283 46-287 (299)
100 KOG1273 WD40 repeat protein [G 99.9 9.3E-25 2E-29 159.7 20.0 258 6-290 13-288 (405)
101 KOG2445 Nuclear pore complex c 99.9 1.2E-24 2.7E-29 158.4 20.4 258 15-286 10-322 (361)
102 KOG1408 WD40 repeat protein [F 99.9 2.7E-25 5.8E-30 178.8 18.5 249 16-286 457-717 (1080)
103 KOG0647 mRNA export protein (c 99.9 6.5E-25 1.4E-29 159.4 18.6 241 12-270 66-311 (347)
104 KOG1036 Mitotic spindle checkp 99.9 7.5E-25 1.6E-29 159.5 18.6 202 17-289 12-269 (323)
105 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-23 3.4E-28 164.7 27.9 261 8-290 21-287 (300)
106 KOG0293 WD40 repeat-containing 99.9 3.7E-25 8E-30 167.1 15.8 209 9-240 260-514 (519)
107 KOG0300 WD40 repeat-containing 99.9 1E-24 2.2E-29 159.9 17.2 214 7-287 179-433 (481)
108 KOG0267 Microtubule severing p 99.9 4.4E-26 9.6E-31 183.0 9.1 210 12-287 22-231 (825)
109 KOG0301 Phospholipase A2-activ 99.9 2.6E-24 5.6E-29 172.1 18.7 204 6-286 89-292 (745)
110 KOG0650 WD40 repeat nucleolar 99.9 3.2E-24 7E-29 169.1 18.3 252 4-280 386-678 (733)
111 KOG0301 Phospholipase A2-activ 99.9 1E-23 2.3E-28 168.7 21.4 244 9-290 5-255 (745)
112 KOG0268 Sof1-like rRNA process 99.9 1.5E-24 3.4E-29 161.2 15.4 245 9-285 100-348 (433)
113 KOG0275 Conserved WD40 repeat- 99.9 1.3E-24 2.7E-29 159.9 13.2 244 13-280 258-507 (508)
114 KOG0267 Microtubule severing p 99.9 1.1E-25 2.5E-30 180.7 8.0 200 9-274 61-260 (825)
115 KOG4328 WD40 protein [Function 99.9 2.4E-23 5.2E-28 159.2 20.0 258 11-289 179-457 (498)
116 KOG0278 Serine/threonine kinas 99.9 3.8E-24 8.2E-29 151.8 14.0 245 12-288 8-260 (334)
117 KOG0641 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 139.1 24.4 219 11-290 26-269 (350)
118 KOG0270 WD40 repeat-containing 99.9 1E-23 2.2E-28 160.6 16.8 209 14-286 239-453 (463)
119 KOG2096 WD40 repeat protein [G 99.9 1.8E-23 4E-28 153.2 17.4 220 11-282 79-308 (420)
120 KOG2048 WD40 repeat protein [G 99.9 2.3E-22 5E-27 160.7 24.3 247 18-285 25-278 (691)
121 KOG0321 WD40 repeat-containing 99.9 6.4E-23 1.4E-27 162.9 20.5 253 11-284 93-393 (720)
122 KOG1036 Mitotic spindle checkp 99.9 2.1E-22 4.6E-27 146.8 21.0 233 16-272 52-294 (323)
123 KOG0269 WD40 repeat-containing 99.9 1.2E-23 2.5E-28 170.4 15.3 209 19-285 40-253 (839)
124 KOG0294 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 148.2 18.7 226 9-260 74-305 (362)
125 KOG0973 Histone transcription 99.9 1.7E-22 3.7E-27 169.3 20.5 221 16-287 11-317 (942)
126 KOG0307 Vesicle coat complex C 99.9 1E-23 2.3E-28 177.4 13.0 215 18-290 64-292 (1049)
127 KOG0639 Transducin-like enhanc 99.9 2.9E-23 6.3E-28 160.8 14.2 243 16-288 417-669 (705)
128 KOG1539 WD repeat protein [Gen 99.9 8.8E-22 1.9E-26 160.9 23.4 261 7-290 191-614 (910)
129 KOG0642 Cell-cycle nuclear pro 99.9 7.8E-23 1.7E-27 160.2 16.6 230 11-289 287-568 (577)
130 KOG1274 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 162.0 23.7 247 15-283 10-263 (933)
131 KOG0270 WD40 repeat-containing 99.9 8.9E-23 1.9E-27 155.5 15.4 192 29-283 191-405 (463)
132 KOG0305 Anaphase promoting com 99.9 2.5E-21 5.3E-26 154.1 23.4 235 24-289 183-426 (484)
133 KOG2055 WD40 repeat protein [G 99.9 1.2E-21 2.7E-26 150.1 20.4 241 18-283 213-513 (514)
134 KOG4378 Nuclear protein COP1 [ 99.9 2.2E-22 4.8E-27 155.7 16.3 218 21-263 82-304 (673)
135 KOG0303 Actin-binding protein 99.9 1.1E-21 2.4E-26 147.7 18.4 208 13-285 76-297 (472)
136 KOG0302 Ribosome Assembly prot 99.9 5.8E-22 1.2E-26 148.3 16.6 211 7-280 200-436 (440)
137 KOG2106 Uncharacterized conser 99.9 2.8E-20 6.1E-25 144.4 23.0 239 13-288 240-483 (626)
138 KOG0646 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 149.8 14.2 201 7-262 112-329 (476)
139 KOG0307 Vesicle coat complex C 99.9 2.5E-22 5.5E-27 169.2 10.8 219 9-285 107-330 (1049)
140 KOG0639 Transducin-like enhanc 99.9 1.7E-21 3.6E-26 151.2 14.1 200 13-281 504-703 (705)
141 KOG1446 Histone H3 (Lys4) meth 99.9 3E-20 6.6E-25 136.2 19.7 204 8-239 90-303 (311)
142 KOG1034 Transcriptional repres 99.9 4.9E-21 1.1E-25 141.0 14.8 246 6-282 123-383 (385)
143 KOG0290 Conserved WD40 repeat- 99.9 6E-21 1.3E-25 138.4 14.9 210 16-283 94-319 (364)
144 KOG1274 WD40 repeat protein [G 99.9 2.3E-20 4.9E-25 154.2 20.1 206 13-278 91-296 (933)
145 KOG1007 WD repeat protein TSSC 99.9 4.6E-20 1E-24 133.8 19.1 216 9-284 113-363 (370)
146 KOG0296 Angio-associated migra 99.9 3.3E-20 7.2E-25 138.4 18.7 174 51-290 55-228 (399)
147 KOG1007 WD repeat protein TSSC 99.9 1.4E-20 2.9E-25 136.5 16.2 213 12-283 57-290 (370)
148 KOG1587 Cytoplasmic dynein int 99.9 9.7E-20 2.1E-24 148.9 23.0 257 8-283 233-517 (555)
149 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.1E-19 1.3E-23 138.7 25.7 232 31-289 2-244 (300)
150 KOG1063 RNA polymerase II elon 99.9 8.1E-20 1.8E-24 146.7 19.5 259 9-282 45-391 (764)
151 KOG4283 Transcription-coupled 99.9 5.7E-20 1.2E-24 133.8 16.7 177 15-242 98-279 (397)
152 KOG0771 Prolactin regulatory e 99.9 2.1E-20 4.6E-25 141.9 15.0 205 22-283 148-355 (398)
153 KOG1273 WD40 repeat protein [G 99.9 4.1E-20 8.8E-25 135.6 14.8 248 10-284 57-324 (405)
154 KOG2106 Uncharacterized conser 99.8 6.2E-19 1.3E-23 137.1 21.4 207 11-280 97-314 (626)
155 KOG1539 WD repeat protein [Gen 99.8 1.2E-19 2.7E-24 148.5 18.3 197 18-282 448-648 (910)
156 KOG2919 Guanine nucleotide-bin 99.8 4.8E-19 1E-23 130.5 18.7 237 18-273 104-361 (406)
157 KOG1188 WD40 repeat protein [G 99.8 1.9E-19 4E-24 133.4 16.5 197 31-286 41-246 (376)
158 KOG4378 Nuclear protein COP1 [ 99.8 1.2E-19 2.7E-24 140.7 15.9 241 20-287 36-285 (673)
159 KOG1408 WD40 repeat protein [F 99.8 7.9E-19 1.7E-23 142.1 20.8 255 13-288 364-677 (1080)
160 KOG2919 Guanine nucleotide-bin 99.8 6.5E-19 1.4E-23 129.8 18.6 242 21-283 52-328 (406)
161 KOG1063 RNA polymerase II elon 99.8 3.1E-19 6.8E-24 143.4 17.3 216 11-282 518-763 (764)
162 KOG1009 Chromatin assembly com 99.8 3.7E-18 8.1E-23 129.2 19.5 255 10-286 57-376 (434)
163 KOG1188 WD40 repeat protein [G 99.8 4.6E-19 1E-23 131.3 14.2 131 8-182 60-198 (376)
164 KOG2096 WD40 repeat protein [G 99.8 1.6E-18 3.4E-23 127.6 16.7 204 15-280 184-400 (420)
165 KOG1310 WD40 repeat protein [G 99.8 5E-19 1.1E-23 139.1 14.8 232 10-287 42-308 (758)
166 KOG0649 WD40 repeat protein [G 99.8 4E-18 8.7E-23 121.0 17.5 211 19-290 11-243 (325)
167 KOG1538 Uncharacterized conser 99.8 2.1E-18 4.5E-23 138.8 18.0 238 20-284 14-295 (1081)
168 KOG0290 Conserved WD40 repeat- 99.8 4E-18 8.6E-23 124.0 17.1 202 16-278 148-361 (364)
169 KOG0321 WD40 repeat-containing 99.8 3.7E-18 8E-23 136.2 18.1 253 23-286 54-351 (720)
170 KOG1445 Tumor-specific antigen 99.8 3.1E-18 6.7E-23 137.0 16.7 114 154-285 633-753 (1012)
171 KOG4227 WD40 repeat protein [G 99.8 3.4E-17 7.4E-22 124.0 21.1 255 9-281 95-386 (609)
172 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-18 4.9E-23 135.5 14.6 216 9-252 335-573 (577)
173 KOG1034 Transcriptional repres 99.8 8.9E-19 1.9E-23 129.3 10.4 215 17-286 88-341 (385)
174 PRK11028 6-phosphogluconolacto 99.8 6.6E-16 1.4E-20 123.0 27.5 256 10-282 27-304 (330)
175 KOG0303 Actin-binding protein 99.8 6.4E-18 1.4E-22 127.7 12.8 166 56-283 77-250 (472)
176 KOG2055 WD40 repeat protein [G 99.8 4.8E-17 1E-21 125.3 17.6 197 63-283 214-418 (514)
177 KOG1334 WD40 repeat protein [G 99.8 4.1E-18 9E-23 131.9 11.7 264 10-283 134-467 (559)
178 KOG4227 WD40 repeat protein [G 99.8 1E-17 2.2E-22 126.9 13.4 255 10-283 48-323 (609)
179 KOG2048 WD40 repeat protein [G 99.8 9.4E-17 2E-21 129.0 19.3 216 6-283 98-320 (691)
180 KOG4328 WD40 protein [Function 99.8 7.8E-17 1.7E-21 123.9 17.6 255 9-283 225-496 (498)
181 KOG1240 Protein kinase contain 99.8 1.7E-16 3.7E-21 135.5 21.0 226 9-290 1039-1281(1431)
182 KOG0650 WD40 repeat nucleolar 99.8 2E-17 4.4E-22 131.2 14.4 202 12-279 515-732 (733)
183 KOG1517 Guanine nucleotide bin 99.8 1.1E-16 2.4E-21 134.8 19.1 220 18-284 1064-1289(1387)
184 KOG2110 Uncharacterized conser 99.8 1.5E-15 3.3E-20 114.1 23.1 198 21-285 49-251 (391)
185 KOG0649 WD40 repeat protein [G 99.8 5E-16 1.1E-20 110.5 18.4 198 19-279 115-313 (325)
186 KOG1523 Actin-related protein 99.8 3.3E-16 7.1E-21 115.5 18.1 215 12-285 4-239 (361)
187 KOG1272 WD40-repeat-containing 99.8 4E-18 8.7E-23 131.3 8.4 201 19-289 130-330 (545)
188 COG2319 FOG: WD40 repeat [Gene 99.7 1.1E-14 2.3E-19 119.9 28.1 250 13-288 60-320 (466)
189 KOG2394 WD40 protein DMR-N9 [G 99.7 2.5E-16 5.5E-21 123.7 16.9 226 28-288 183-458 (636)
190 KOG0644 Uncharacterized conser 99.7 1.5E-17 3.3E-22 136.7 10.3 246 11-286 183-472 (1113)
191 COG2319 FOG: WD40 repeat [Gene 99.7 7.5E-15 1.6E-19 120.8 25.6 211 9-285 146-362 (466)
192 PRK01742 tolB translocation pr 99.7 1.8E-15 3.8E-20 124.2 20.2 207 11-289 196-410 (429)
193 KOG1354 Serine/threonine prote 99.7 2.7E-15 5.9E-20 111.9 19.0 261 18-285 25-362 (433)
194 KOG1538 Uncharacterized conser 99.7 1.2E-14 2.5E-19 117.6 22.7 210 5-239 40-293 (1081)
195 KOG3881 Uncharacterized conser 99.7 2.6E-15 5.7E-20 113.5 17.9 251 17-289 54-327 (412)
196 PF08662 eIF2A: Eukaryotic tra 99.7 3.5E-15 7.7E-20 108.4 17.7 110 154-286 65-183 (194)
197 KOG1009 Chromatin assembly com 99.7 3.5E-16 7.6E-21 118.7 12.3 180 18-289 13-202 (434)
198 KOG2110 Uncharacterized conser 99.7 7.5E-15 1.6E-19 110.4 18.9 203 18-290 5-212 (391)
199 KOG2445 Nuclear pore complex c 99.7 3.4E-15 7.3E-20 109.7 15.6 167 58-283 11-257 (361)
200 KOG1963 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 120.7 19.9 250 14-285 12-284 (792)
201 KOG1517 Guanine nucleotide bin 99.7 3.4E-15 7.4E-20 126.1 16.2 210 22-286 1169-1385(1387)
202 KOG2111 Uncharacterized conser 99.7 1.1E-13 2.5E-18 102.2 21.4 179 40-285 75-259 (346)
203 KOG1445 Tumor-specific antigen 99.7 1.2E-15 2.6E-20 122.5 12.1 189 36-283 599-799 (1012)
204 KOG1524 WD40 repeat-containing 99.7 3.3E-15 7.2E-20 117.6 13.8 176 31-278 76-251 (737)
205 PF02239 Cytochrom_D1: Cytochr 99.7 2.2E-13 4.7E-18 108.7 24.5 267 8-290 26-355 (369)
206 PRK11028 6-phosphogluconolacto 99.7 1.2E-13 2.7E-18 110.0 23.1 232 34-284 6-260 (330)
207 KOG1587 Cytoplasmic dynein int 99.6 6.8E-14 1.5E-18 115.0 20.2 231 39-285 221-475 (555)
208 PRK05137 tolB translocation pr 99.6 4.8E-13 1E-17 110.3 24.7 209 9-286 192-416 (435)
209 PF08662 eIF2A: Eukaryotic tra 99.6 1.4E-13 3.1E-18 100.0 17.4 158 22-248 9-186 (194)
210 KOG1963 WD40 repeat protein [G 99.6 4.5E-13 9.8E-18 111.3 21.9 170 16-240 203-376 (792)
211 PRK04922 tolB translocation pr 99.6 4.8E-13 1E-17 110.2 22.4 206 10-285 195-414 (433)
212 KOG1524 WD40 repeat-containing 99.6 2.4E-14 5.3E-19 112.8 13.1 189 9-279 95-283 (737)
213 KOG2139 WD40 repeat protein [G 99.6 1.5E-13 3.3E-18 103.4 16.7 198 18-270 98-298 (445)
214 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 106.8 24.0 204 12-285 192-409 (429)
215 PRK01742 tolB translocation pr 99.6 2E-13 4.4E-18 112.1 17.9 179 39-287 183-366 (429)
216 KOG1523 Actin-related protein 99.6 3.9E-13 8.5E-18 99.5 17.1 213 8-274 45-270 (361)
217 PRK02889 tolB translocation pr 99.6 2E-12 4.3E-17 106.2 23.0 202 11-282 188-403 (427)
218 PF02239 Cytochrom_D1: Cytochr 99.6 2.8E-12 6.1E-17 102.4 23.0 200 33-289 9-209 (369)
219 KOG2321 WD40 repeat protein [G 99.5 1.8E-12 3.8E-17 103.3 19.0 251 17-288 50-308 (703)
220 KOG1272 WD40-repeat-containing 99.5 1.1E-14 2.3E-19 112.7 6.5 191 18-280 170-360 (545)
221 KOG2139 WD40 repeat protein [G 99.5 4.3E-12 9.2E-17 95.7 19.5 202 17-285 139-386 (445)
222 KOG1064 RAVE (regulator of V-A 99.5 9E-14 2E-18 123.4 11.7 201 14-290 2204-2406(2439)
223 KOG2394 WD40 protein DMR-N9 [G 99.5 9.6E-13 2.1E-17 103.9 14.8 163 18-240 219-453 (636)
224 TIGR02800 propeller_TolB tol-p 99.5 2.1E-11 4.6E-16 100.5 22.4 203 11-283 182-398 (417)
225 PF10282 Lactonase: Lactonase, 99.5 2.1E-10 4.6E-15 91.7 26.7 255 19-288 37-330 (345)
226 KOG1310 WD40 repeat protein [G 99.5 2.9E-13 6.3E-18 107.2 9.7 168 54-282 44-231 (758)
227 PRK02889 tolB translocation pr 99.5 1.5E-11 3.2E-16 101.1 19.4 182 40-287 176-365 (427)
228 KOG0322 G-protein beta subunit 99.5 1.1E-12 2.4E-17 94.7 10.8 159 17-238 149-322 (323)
229 PRK00178 tolB translocation pr 99.5 9.5E-11 2.1E-15 96.9 23.8 205 11-285 191-409 (430)
230 KOG2111 Uncharacterized conser 99.5 1.5E-11 3.3E-16 91.2 16.7 86 11-98 174-260 (346)
231 TIGR02658 TTQ_MADH_Hv methylam 99.4 1E-09 2.3E-14 86.0 27.4 242 26-290 53-338 (352)
232 PRK04922 tolB translocation pr 99.4 2E-11 4.2E-16 100.7 18.8 180 40-287 184-373 (433)
233 PRK03629 tolB translocation pr 99.4 8.2E-11 1.8E-15 96.7 21.8 178 40-286 179-367 (429)
234 KOG0644 Uncharacterized conser 99.4 3.8E-13 8.3E-18 111.4 7.5 205 9-240 223-469 (1113)
235 KOG4190 Uncharacterized conser 99.4 7.4E-13 1.6E-17 105.4 8.8 218 11-287 728-953 (1034)
236 KOG1240 Protein kinase contain 99.4 5.9E-11 1.3E-15 102.6 20.4 262 12-280 1092-1431(1431)
237 PRK05137 tolB translocation pr 99.4 8.3E-11 1.8E-15 97.1 20.9 177 40-285 182-369 (435)
238 KOG4497 Uncharacterized conser 99.4 3.9E-12 8.4E-17 94.9 11.0 188 23-280 13-238 (447)
239 KOG0771 Prolactin regulatory e 99.4 4.3E-12 9.4E-17 97.3 11.3 171 10-240 178-355 (398)
240 PRK04792 tolB translocation pr 99.4 2.4E-10 5.2E-15 94.4 22.3 202 14-284 213-427 (448)
241 KOG3881 Uncharacterized conser 99.4 3.3E-11 7.1E-16 91.8 14.7 183 19-263 149-342 (412)
242 KOG0974 WD-repeat protein WDR6 99.4 2.7E-11 5.9E-16 102.8 15.4 197 21-284 90-290 (967)
243 KOG2321 WD40 repeat protein [G 99.4 2.3E-11 5.1E-16 97.1 13.0 204 22-281 137-342 (703)
244 PRK01029 tolB translocation pr 99.4 8E-10 1.7E-14 90.6 22.5 210 14-287 180-408 (428)
245 KOG0280 Uncharacterized conser 99.4 6.7E-11 1.5E-15 87.0 14.4 203 21-284 124-335 (339)
246 COG5170 CDC55 Serine/threonine 99.3 1.3E-10 2.7E-15 86.4 15.4 260 17-283 25-368 (460)
247 KOG1409 Uncharacterized conser 99.3 1.5E-10 3.2E-15 87.0 15.5 252 9-285 15-273 (404)
248 KOG4497 Uncharacterized conser 99.3 4.7E-10 1E-14 84.0 17.6 101 154-274 324-424 (447)
249 KOG2315 Predicted translation 99.3 1E-09 2.2E-14 87.6 20.1 238 22-287 129-395 (566)
250 TIGR02800 propeller_TolB tol-p 99.3 5.9E-10 1.3E-14 92.0 19.8 180 39-286 169-358 (417)
251 KOG4547 WD40 repeat-containing 99.3 8.3E-10 1.8E-14 88.5 18.5 194 28-283 3-221 (541)
252 KOG1334 WD40 repeat protein [G 99.3 3.3E-11 7.2E-16 94.3 10.0 226 53-289 135-431 (559)
253 KOG2315 Predicted translation 99.3 2.9E-09 6.3E-14 85.1 19.8 241 18-289 34-351 (566)
254 KOG1409 Uncharacterized conser 99.3 1.1E-09 2.3E-14 82.5 16.1 195 18-240 68-271 (404)
255 PF00400 WD40: WD domain, G-be 99.2 2.6E-11 5.6E-16 63.7 5.2 38 9-46 2-39 (39)
256 KOG3914 WD repeat protein WDR4 99.2 2.1E-10 4.6E-15 87.8 11.6 80 204-290 151-231 (390)
257 KOG4714 Nucleoporin [Nuclear s 99.2 2.8E-10 6.1E-15 82.4 11.6 73 207-283 182-255 (319)
258 PRK04792 tolB translocation pr 99.2 3.5E-09 7.6E-14 87.5 19.7 178 41-286 199-386 (448)
259 KOG0974 WD-repeat protein WDR6 99.2 1.2E-09 2.5E-14 93.1 16.8 104 163-285 146-249 (967)
260 KOG0309 Conserved WD40 repeat- 99.2 2.3E-10 5E-15 94.3 11.6 216 7-284 103-341 (1081)
261 PLN02919 haloacid dehalogenase 99.2 2.3E-08 5E-13 90.4 24.9 227 21-286 626-892 (1057)
262 KOG0280 Uncharacterized conser 99.2 1.1E-08 2.3E-13 75.7 18.5 206 18-283 69-285 (339)
263 PRK00178 tolB translocation pr 99.2 9.9E-09 2.1E-13 85.0 20.5 178 41-286 180-367 (430)
264 KOG1832 HIV-1 Vpr-binding prot 99.2 5.2E-11 1.1E-15 100.0 6.5 216 9-267 1092-1316(1516)
265 KOG0309 Conserved WD40 repeat- 99.1 3.4E-10 7.3E-15 93.4 9.4 209 18-285 24-235 (1081)
266 COG2706 3-carboxymuconate cycl 99.1 1E-06 2.3E-11 67.3 27.1 257 16-283 37-322 (346)
267 PF00400 WD40: WD domain, G-be 99.1 1.7E-10 3.7E-15 60.6 4.9 38 243-280 2-39 (39)
268 KOG2041 WD40 repeat protein [G 99.1 4.2E-09 9.1E-14 86.9 14.7 244 11-283 64-338 (1189)
269 KOG2314 Translation initiation 99.1 6.7E-09 1.4E-13 83.1 15.4 242 20-285 251-576 (698)
270 KOG1645 RING-finger-containing 99.1 4.3E-08 9.3E-13 75.6 18.6 83 11-97 186-269 (463)
271 PRK01029 tolB translocation pr 99.1 8.1E-08 1.8E-12 79.0 21.8 185 40-287 165-364 (428)
272 PRK04043 tolB translocation pr 99.1 2.3E-07 5E-12 75.9 24.3 197 20-286 189-404 (419)
273 TIGR03300 assembly_YfgL outer 99.1 7.4E-08 1.6E-12 78.4 21.4 226 30-289 105-345 (377)
274 KOG2041 WD40 repeat protein [G 99.0 8.8E-09 1.9E-13 85.1 13.9 243 18-273 14-279 (1189)
275 COG5354 Uncharacterized protei 99.0 8.7E-08 1.9E-12 76.1 18.5 244 19-286 72-352 (561)
276 KOG4714 Nucleoporin [Nuclear s 99.0 7.3E-09 1.6E-13 75.3 11.6 208 7-280 78-316 (319)
277 KOG1064 RAVE (regulator of V-A 99.0 1.7E-09 3.7E-14 97.3 9.9 190 32-290 2182-2374(2439)
278 KOG4532 WD40-like repeat conta 99.0 4E-08 8.7E-13 71.9 15.1 196 32-284 130-333 (344)
279 KOG4547 WD40 repeat-containing 99.0 1.4E-07 3.1E-12 76.1 19.1 153 29-240 69-221 (541)
280 COG5354 Uncharacterized protei 99.0 1.6E-07 3.4E-12 74.7 19.0 240 14-284 28-308 (561)
281 PF08450 SGL: SMP-30/Gluconola 99.0 2.9E-06 6.2E-11 64.8 25.9 199 23-290 4-220 (246)
282 KOG0882 Cyclophilin-related pe 99.0 5.8E-09 1.3E-13 81.4 10.4 212 17-290 8-239 (558)
283 PF04762 IKI3: IKI3 family; I 99.0 5.2E-07 1.1E-11 80.5 23.3 241 17-286 74-337 (928)
284 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.8E-06 3.9E-11 68.1 23.7 208 40-290 27-295 (352)
285 PF13360 PQQ_2: PQQ-like domai 99.0 2.8E-07 6E-12 70.0 18.9 192 29-287 35-235 (238)
286 COG4946 Uncharacterized protei 99.0 2.5E-06 5.4E-11 67.7 23.7 113 155-288 366-483 (668)
287 KOG3914 WD repeat protein WDR4 99.0 3.9E-08 8.5E-13 75.7 13.6 160 21-248 65-231 (390)
288 PF10282 Lactonase: Lactonase, 99.0 9.5E-07 2.1E-11 70.9 22.2 229 33-282 2-275 (345)
289 KOG2695 WD40 repeat protein [G 98.9 4E-09 8.7E-14 79.6 7.6 117 154-290 258-384 (425)
290 PF15492 Nbas_N: Neuroblastoma 98.9 8.2E-07 1.8E-11 65.9 19.0 73 21-94 46-127 (282)
291 KOG4532 WD40-like repeat conta 98.9 1E-06 2.2E-11 64.7 19.1 205 23-290 72-290 (344)
292 KOG1275 PAB-dependent poly(A) 98.9 1E-07 2.2E-12 80.9 14.7 184 29-280 146-340 (1118)
293 COG4946 Uncharacterized protei 98.9 2.3E-06 5E-11 67.9 20.9 143 16-167 357-507 (668)
294 PLN02919 haloacid dehalogenase 98.9 6.2E-06 1.3E-10 75.1 26.3 230 22-287 571-838 (1057)
295 KOG1912 WD40 repeat protein [G 98.9 2.4E-07 5.2E-12 77.5 15.6 212 8-240 45-305 (1062)
296 KOG1354 Serine/threonine prote 98.8 5.5E-08 1.2E-12 73.6 10.7 179 16-240 162-360 (433)
297 KOG4190 Uncharacterized conser 98.8 1.3E-08 2.8E-13 81.8 7.3 174 54-288 729-912 (1034)
298 TIGR03300 assembly_YfgL outer 98.8 1.1E-05 2.4E-10 65.8 23.9 231 29-287 64-302 (377)
299 KOG2695 WD40 repeat protein [G 98.8 3E-08 6.4E-13 75.0 7.4 131 17-190 251-386 (425)
300 KOG2314 Translation initiation 98.8 4.9E-06 1.1E-10 67.3 19.6 235 22-283 214-479 (698)
301 COG2706 3-carboxymuconate cycl 98.7 1.4E-05 3.1E-10 61.3 20.7 229 39-283 15-275 (346)
302 KOG2066 Vacuolar assembly/sort 98.7 4.2E-06 9.1E-11 70.5 18.5 166 13-240 53-234 (846)
303 KOG0882 Cyclophilin-related pe 98.7 7.5E-07 1.6E-11 70.0 13.0 229 9-290 44-313 (558)
304 KOG1912 WD40 repeat protein [G 98.7 4.5E-06 9.8E-11 70.2 18.0 254 17-283 14-305 (1062)
305 PF13360 PQQ_2: PQQ-like domai 98.7 1.7E-05 3.6E-10 60.2 20.3 183 38-287 1-196 (238)
306 KOG1920 IkappaB kinase complex 98.7 1.2E-05 2.6E-10 70.9 21.0 243 18-287 68-327 (1265)
307 PRK11138 outer membrane biogen 98.6 1.5E-05 3.1E-10 65.4 20.3 226 30-288 120-359 (394)
308 PRK04043 tolB translocation pr 98.6 2.8E-05 6E-10 63.9 21.3 177 40-286 169-361 (419)
309 PF11768 DUF3312: Protein of u 98.5 6.3E-07 1.4E-11 73.0 9.4 77 16-98 257-333 (545)
310 KOG1832 HIV-1 Vpr-binding prot 98.5 1.1E-07 2.3E-12 80.8 5.0 206 52-290 1093-1299(1516)
311 KOG1008 Uncharacterized conser 98.5 3.6E-08 7.7E-13 80.5 2.1 205 18-283 56-276 (783)
312 PF07433 DUF1513: Protein of u 98.5 0.00019 4.2E-09 55.1 21.8 209 21-289 7-254 (305)
313 KOG2114 Vacuolar assembly/sort 98.5 1.6E-05 3.5E-10 67.7 17.2 208 25-285 30-246 (933)
314 KOG1275 PAB-dependent poly(A) 98.5 3.2E-06 6.9E-11 72.3 12.5 153 20-239 179-342 (1118)
315 KOG2066 Vacuolar assembly/sort 98.4 2.7E-06 5.9E-11 71.6 10.7 152 63-289 40-194 (846)
316 PF06977 SdiA-regulated: SdiA- 98.4 0.00036 7.9E-09 52.6 22.7 220 12-279 15-247 (248)
317 PF07433 DUF1513: Protein of u 98.4 0.00016 3.5E-09 55.5 18.5 56 24-83 56-117 (305)
318 smart00320 WD40 WD40 repeats. 98.4 9.9E-07 2.1E-11 45.5 5.0 38 9-46 3-40 (40)
319 PF11768 DUF3312: Protein of u 98.4 0.00028 6.1E-09 58.0 20.8 75 204-286 259-333 (545)
320 PF08450 SGL: SMP-30/Gluconola 98.4 0.00049 1.1E-08 52.6 23.5 183 21-268 42-241 (246)
321 PRK02888 nitrous-oxide reducta 98.4 5.8E-05 1.3E-09 63.4 16.9 185 26-283 200-405 (635)
322 PRK11138 outer membrane biogen 98.4 0.00026 5.6E-09 58.2 20.4 158 29-247 68-230 (394)
323 PF14783 BBS2_Mid: Ciliary BBS 98.3 0.00011 2.4E-09 47.1 14.0 67 21-95 2-72 (111)
324 PF04762 IKI3: IKI3 family; I 98.2 0.00038 8.3E-09 62.8 20.3 235 22-283 260-520 (928)
325 PF06433 Me-amine-dh_H: Methyl 98.2 0.0013 2.8E-08 51.4 20.8 219 22-290 98-328 (342)
326 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00053 1.1E-08 50.8 16.9 66 30-100 63-129 (354)
327 PF08596 Lgl_C: Lethal giant l 98.2 0.0013 2.8E-08 53.5 20.3 223 20-289 3-297 (395)
328 KOG1645 RING-finger-containing 98.2 1.2E-05 2.6E-10 62.6 8.1 89 154-260 199-289 (463)
329 COG0823 TolB Periplasmic compo 98.2 0.00032 6.8E-09 57.6 16.6 114 154-285 243-361 (425)
330 smart00320 WD40 WD40 repeats. 98.1 6E-06 1.3E-10 42.4 4.4 39 242-280 2-40 (40)
331 PF08596 Lgl_C: Lethal giant l 98.1 0.003 6.6E-08 51.4 21.5 237 10-280 78-333 (395)
332 KOG1008 Uncharacterized conser 98.1 7.6E-07 1.6E-11 73.1 0.8 168 13-240 97-276 (783)
333 COG0823 TolB Periplasmic compo 98.1 0.00054 1.2E-08 56.2 16.1 187 14-268 188-385 (425)
334 KOG2444 WD40 repeat protein [G 98.1 7.4E-06 1.6E-10 59.1 4.7 101 167-283 75-178 (238)
335 KOG3617 WD40 and TPR repeat-co 98.0 0.00018 3.9E-09 61.7 13.2 71 21-95 62-132 (1416)
336 PF04053 Coatomer_WDAD: Coatom 98.0 0.004 8.6E-08 51.5 20.1 172 11-263 25-207 (443)
337 KOG4640 Anaphase-promoting com 98.0 3.9E-05 8.5E-10 63.3 8.3 78 18-100 20-98 (665)
338 COG5170 CDC55 Serine/threonine 98.0 0.00012 2.6E-09 55.3 10.2 119 154-285 178-312 (460)
339 KOG4640 Anaphase-promoting com 97.9 6.5E-05 1.4E-09 62.0 8.2 76 207-289 23-99 (665)
340 PF06433 Me-amine-dh_H: Methyl 97.9 0.0075 1.6E-07 47.3 19.7 184 40-285 17-216 (342)
341 COG3391 Uncharacterized conser 97.9 0.0099 2.2E-07 48.6 22.0 206 22-289 77-290 (381)
342 PRK02888 nitrous-oxide reducta 97.9 0.0013 2.7E-08 55.7 15.0 55 230-285 295-354 (635)
343 KOG3617 WD40 and TPR repeat-co 97.9 5.2E-05 1.1E-09 64.9 7.0 110 154-283 21-132 (1416)
344 PF03178 CPSF_A: CPSF A subuni 97.8 0.0056 1.2E-07 48.8 18.2 184 40-283 2-203 (321)
345 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0019 4.1E-08 41.6 12.2 107 65-235 2-110 (111)
346 PF08553 VID27: VID27 cytoplas 97.8 0.00076 1.7E-08 58.9 13.2 98 168-281 548-646 (794)
347 cd00216 PQQ_DH Dehydrogenases 97.8 0.017 3.7E-07 48.9 22.5 70 31-100 111-189 (488)
348 cd00216 PQQ_DH Dehydrogenases 97.7 0.019 4.1E-07 48.7 20.6 69 30-100 61-134 (488)
349 PF04841 Vps16_N: Vps16, N-ter 97.7 0.02 4.3E-07 47.3 25.8 51 41-97 62-112 (410)
350 KOG3621 WD40 repeat-containing 97.7 0.0071 1.5E-07 51.2 16.5 77 17-95 75-155 (726)
351 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.002 4.3E-08 47.9 11.9 114 155-289 17-130 (354)
352 PF12894 Apc4_WD40: Anaphase-p 97.7 0.00021 4.6E-09 38.4 5.1 34 18-52 11-44 (47)
353 KOG3621 WD40 repeat-containing 97.6 0.00044 9.5E-09 58.1 8.9 112 154-283 39-155 (726)
354 PF02897 Peptidase_S9_N: Proly 97.6 0.03 6.4E-07 46.5 22.9 201 20-282 125-357 (414)
355 COG3204 Uncharacterized protei 97.6 0.02 4.3E-07 43.6 18.0 217 14-279 81-309 (316)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.047 1E-06 46.7 20.5 211 30-287 69-338 (527)
357 PF05694 SBP56: 56kDa selenium 97.5 0.035 7.6E-07 45.1 18.5 219 4-270 108-391 (461)
358 KOG1920 IkappaB kinase complex 97.4 0.039 8.5E-07 50.0 18.5 162 17-183 108-325 (1265)
359 KOG2114 Vacuolar assembly/sort 97.4 0.009 1.9E-07 51.8 14.3 117 158-285 74-204 (933)
360 PF00780 CNH: CNH domain; Int 97.4 0.036 7.8E-07 43.1 23.0 236 28-290 5-263 (275)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.088 1.9E-06 45.1 23.0 69 31-100 121-195 (527)
362 PF05096 Glu_cyclase_2: Glutam 97.3 0.046 9.9E-07 41.5 21.2 185 21-270 47-249 (264)
363 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0012 2.5E-08 35.5 5.1 34 252-285 11-44 (47)
364 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.074 1.6E-06 43.1 17.8 247 11-282 35-315 (353)
365 PF04053 Coatomer_WDAD: Coatom 97.2 0.037 7.9E-07 46.0 15.5 57 223-284 119-175 (443)
366 KOG2395 Protein involved in va 97.2 0.025 5.3E-07 46.7 14.0 98 168-281 400-499 (644)
367 COG3386 Gluconolactonase [Carb 97.2 0.073 1.6E-06 41.9 20.0 203 25-290 31-250 (307)
368 KOG2079 Vacuolar assembly/sort 97.1 0.0011 2.3E-08 58.6 5.9 68 223-290 101-168 (1206)
369 PHA02713 hypothetical protein; 97.1 0.067 1.4E-06 46.2 16.7 63 220-285 464-536 (557)
370 COG3391 Uncharacterized conser 97.1 0.12 2.7E-06 42.3 19.6 180 20-261 117-307 (381)
371 COG3490 Uncharacterized protei 96.9 0.019 4.2E-07 43.5 10.2 103 154-271 73-180 (366)
372 KOG2079 Vacuolar assembly/sort 96.9 0.0049 1.1E-07 54.7 7.9 73 18-94 130-203 (1206)
373 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.044 9.6E-07 44.4 12.4 65 27-97 1-74 (353)
374 TIGR03118 PEPCTERM_chp_1 conse 96.7 0.18 3.9E-06 39.0 20.2 230 20-290 24-287 (336)
375 PF05694 SBP56: 56kDa selenium 96.7 0.28 6.1E-06 40.1 17.6 106 168-285 218-345 (461)
376 PF08553 VID27: VID27 cytoplas 96.6 0.086 1.9E-06 46.8 13.2 65 31-96 494-562 (794)
377 PF10168 Nup88: Nuclear pore c 96.4 0.38 8.2E-06 42.7 16.0 80 17-97 83-182 (717)
378 PF03178 CPSF_A: CPSF A subuni 96.3 0.4 8.6E-06 38.3 19.4 184 30-278 42-261 (321)
379 PF14727 PHTB1_N: PTHB1 N-term 96.3 0.47 1E-05 39.1 15.8 60 220-281 144-203 (418)
380 PF10313 DUF2415: Uncharacteri 96.3 0.03 6.4E-07 29.2 5.5 31 19-49 1-34 (43)
381 PF15492 Nbas_N: Neuroblastoma 96.3 0.33 7.1E-06 37.0 14.8 43 204-252 229-271 (282)
382 PHA03098 kelch-like protein; P 96.3 0.63 1.4E-05 40.2 19.3 66 29-98 294-370 (534)
383 PRK13616 lipoprotein LpqB; Pro 96.3 0.67 1.5E-05 40.4 18.2 59 19-84 350-416 (591)
384 PF12234 Rav1p_C: RAVE protein 96.2 0.54 1.2E-05 40.8 15.6 75 19-94 30-104 (631)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.079 1.7E-06 43.4 10.2 86 9-98 298-402 (415)
386 COG3490 Uncharacterized protei 96.1 0.43 9.2E-06 36.6 16.8 55 25-83 120-180 (366)
387 PF10313 DUF2415: Uncharacteri 96.1 0.039 8.6E-07 28.7 5.1 38 253-290 1-41 (43)
388 COG3386 Gluconolactonase [Carb 96.0 0.55 1.2E-05 37.1 16.6 98 154-269 168-272 (307)
389 KOG4499 Ca2+-binding protein R 96.0 0.43 9.2E-06 35.5 16.1 103 154-271 163-274 (310)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 0.76 1.6E-05 37.9 19.3 73 23-95 6-98 (415)
391 KOG4499 Ca2+-binding protein R 95.9 0.46 1E-05 35.3 14.6 80 208-291 161-250 (310)
392 KOG1916 Nuclear protein, conta 95.9 0.0058 1.3E-07 53.4 2.5 67 213-282 188-265 (1283)
393 KOG2444 WD40 repeat protein [G 95.8 0.024 5.1E-07 41.5 4.9 67 30-99 70-137 (238)
394 KOG3630 Nuclear pore complex, 95.7 0.11 2.4E-06 47.1 9.2 122 156-283 108-229 (1405)
395 PRK13616 lipoprotein LpqB; Pro 95.6 0.98 2.1E-05 39.4 14.7 69 205-281 448-524 (591)
396 KOG4441 Proteins containing BT 95.6 1.4 3.1E-05 38.3 19.4 69 28-100 283-363 (571)
397 PF10168 Nup88: Nuclear pore c 95.5 1.5 3.4E-05 39.1 15.8 43 204-248 146-188 (717)
398 PF06977 SdiA-regulated: SdiA- 95.5 0.8 1.7E-05 35.0 16.3 165 64-288 23-206 (248)
399 TIGR03074 PQQ_membr_DH membran 95.4 1.9 4.1E-05 38.9 24.5 72 29-100 193-284 (764)
400 KOG1897 Damage-specific DNA bi 95.4 2 4.3E-05 38.9 19.7 240 22-280 117-388 (1096)
401 PHA02713 hypothetical protein; 95.3 0.91 2E-05 39.4 13.7 20 220-240 513-534 (557)
402 COG3823 Glutamine cyclotransfe 95.3 0.76 1.7E-05 33.6 14.4 68 29-100 55-125 (262)
403 PF14583 Pectate_lyase22: Olig 95.3 1.3 2.7E-05 36.0 18.5 240 5-285 17-275 (386)
404 PF07569 Hira: TUP1-like enhan 95.2 0.13 2.7E-06 38.5 7.3 60 223-284 24-97 (219)
405 PF11715 Nup160: Nucleoporin N 94.9 0.4 8.8E-06 41.5 10.7 68 223-290 160-256 (547)
406 PF15390 DUF4613: Domain of un 94.9 2.1 4.6E-05 36.5 15.6 164 18-240 19-187 (671)
407 PF04841 Vps16_N: Vps16, N-ter 94.8 2 4.4E-05 35.7 21.1 39 9-48 71-109 (410)
408 KOG2395 Protein involved in va 94.8 0.72 1.6E-05 38.6 10.8 81 9-93 367-458 (644)
409 PHA02790 Kelch-like protein; P 94.7 2.4 5.2E-05 36.2 19.0 65 29-97 271-342 (480)
410 PF07569 Hira: TUP1-like enhan 94.4 0.44 9.6E-06 35.6 8.3 68 27-97 19-98 (219)
411 PF15390 DUF4613: Domain of un 94.3 0.84 1.8E-05 38.8 10.3 76 19-96 57-144 (671)
412 TIGR03074 PQQ_membr_DH membran 94.3 4 8.6E-05 36.9 17.6 71 30-100 260-350 (764)
413 PRK10115 protease 2; Provision 94.2 3.9 8.6E-05 36.6 20.9 71 20-96 128-209 (686)
414 PF14870 PSII_BNR: Photosynthe 94.2 2.3 4.9E-05 33.6 17.4 72 16-92 142-213 (302)
415 KOG3630 Nuclear pore complex, 94.2 1.6 3.6E-05 40.2 12.3 95 154-269 161-260 (1405)
416 KOG1897 Damage-specific DNA bi 94.1 4.4 9.6E-05 36.9 21.2 247 20-288 585-862 (1096)
417 PF05096 Glu_cyclase_2: Glutam 94.0 2.1 4.6E-05 32.8 19.8 164 58-289 40-210 (264)
418 PF02897 Peptidase_S9_N: Proly 94.0 3.1 6.8E-05 34.6 17.6 32 65-98 126-162 (414)
419 COG4880 Secreted protein conta 93.9 3.1 6.6E-05 34.1 15.3 190 40-287 406-597 (603)
420 KOG2247 WD40 repeat-containing 93.7 0.0088 1.9E-07 48.7 -1.8 145 66-276 38-182 (615)
421 KOG1983 Tomosyn and related SN 93.4 4.6 0.0001 37.8 14.3 72 19-95 36-109 (993)
422 PF08728 CRT10: CRT10; InterP 92.7 6.9 0.00015 34.8 15.9 76 203-281 162-245 (717)
423 KOG2377 Uncharacterized conser 92.7 5.1 0.00011 33.3 14.2 141 38-182 41-187 (657)
424 COG5167 VID27 Protein involved 92.7 2.5 5.3E-05 35.5 10.3 58 223-282 575-632 (776)
425 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.79 1.7E-05 23.5 6.1 33 28-60 1-34 (42)
426 PF02333 Phytase: Phytase; In 92.3 5.4 0.00012 32.6 13.6 63 219-282 169-237 (381)
427 KOG1900 Nuclear pore complex, 92.1 5.2 0.00011 37.7 12.6 34 250-283 240-273 (1311)
428 KOG2280 Vacuolar assembly/sort 91.5 9.7 0.00021 33.8 14.5 52 40-97 64-115 (829)
429 PF12234 Rav1p_C: RAVE protein 91.3 4.9 0.00011 35.2 11.1 99 167-281 46-155 (631)
430 COG4590 ABC-type uncharacteriz 91.2 0.61 1.3E-05 38.3 5.4 85 9-96 211-301 (733)
431 COG4257 Vgb Streptogramin lyas 90.9 6.1 0.00013 30.5 17.8 241 20-286 63-309 (353)
432 PF08801 Nucleoporin_N: Nup133 90.8 8.7 0.00019 32.2 13.2 31 253-283 190-220 (422)
433 PF14781 BBS2_N: Ciliary BBSom 90.7 3.8 8.3E-05 27.7 14.2 73 22-98 2-85 (136)
434 TIGR03606 non_repeat_PQQ dehyd 90.5 9.6 0.00021 32.2 13.6 61 12-72 23-88 (454)
435 PF11715 Nup160: Nucleoporin N 90.2 0.97 2.1E-05 39.2 6.3 39 19-57 215-257 (547)
436 PF10647 Gmad1: Lipoprotein Lp 90.0 7.4 0.00016 30.0 11.1 108 154-281 29-143 (253)
437 TIGR02276 beta_rpt_yvtn 40-res 89.4 1.8 3.9E-05 22.1 5.0 39 220-260 3-41 (42)
438 PF14781 BBS2_N: Ciliary BBSom 88.8 5.6 0.00012 27.0 12.3 113 156-289 6-132 (136)
439 TIGR03118 PEPCTERM_chp_1 conse 88.6 10 0.00023 29.8 18.8 80 167-260 217-305 (336)
440 PHA03098 kelch-like protein; P 88.4 16 0.00035 31.8 16.3 66 29-98 342-418 (534)
441 smart00564 PQQ beta-propeller 88.4 1.8 3.8E-05 20.8 4.1 24 32-55 8-31 (33)
442 PF00780 CNH: CNH domain; Int 87.8 11 0.00024 29.2 16.9 59 31-98 106-169 (275)
443 KOG4460 Nuclear pore complex, 87.4 17 0.00037 31.0 11.0 80 18-98 103-202 (741)
444 KOG3611 Semaphorins [Signal tr 87.3 14 0.00029 33.4 11.2 79 9-90 399-489 (737)
445 KOG4441 Proteins containing BT 87.0 21 0.00045 31.4 16.0 65 29-99 332-409 (571)
446 PF14761 HPS3_N: Hermansky-Pud 86.9 2.7 5.8E-05 31.1 5.7 50 223-273 30-80 (215)
447 PF12657 TFIIIC_delta: Transcr 86.8 8.8 0.00019 27.5 8.4 33 64-96 87-123 (173)
448 KOG2247 WD40 repeat-containing 86.1 0.13 2.8E-06 42.3 -1.3 71 21-97 37-108 (615)
449 KOG1916 Nuclear protein, conta 86.0 0.97 2.1E-05 40.5 3.7 70 20-94 182-265 (1283)
450 PF14761 HPS3_N: Hermansky-Pud 86.0 12 0.00026 27.8 12.6 59 32-95 30-97 (215)
451 KOG2063 Vacuolar assembly/sort 85.8 19 0.00042 33.1 11.4 71 25-98 21-100 (877)
452 KOG2280 Vacuolar assembly/sort 85.6 26 0.00057 31.3 14.4 68 10-83 75-146 (829)
453 KOG2377 Uncharacterized conser 85.6 4.8 0.00011 33.4 7.0 87 5-95 53-141 (657)
454 PF12341 DUF3639: Protein of u 85.3 2.6 5.7E-05 19.5 3.3 26 253-280 2-27 (27)
455 COG4590 ABC-type uncharacteriz 84.8 6.9 0.00015 32.5 7.6 59 223-284 330-388 (733)
456 PF01436 NHL: NHL repeat; Int 84.8 2.8 6.1E-05 19.4 4.3 24 255-278 4-27 (28)
457 COG3204 Uncharacterized protei 84.7 17 0.00038 28.4 14.6 170 63-284 86-265 (316)
458 PF10395 Utp8: Utp8 family; I 84.5 29 0.00063 30.8 21.7 86 5-96 58-161 (670)
459 KOG1900 Nuclear pore complex, 84.0 12 0.00027 35.4 9.5 87 6-96 67-159 (1311)
460 PF02333 Phytase: Phytase; In 83.8 23 0.0005 29.1 20.4 103 163-283 172-291 (381)
461 KOG1898 Splicing factor 3b, su 83.6 39 0.00085 31.7 17.1 106 154-281 939-1047(1205)
462 PF14583 Pectate_lyase22: Olig 83.1 25 0.00053 29.0 18.1 31 156-186 245-278 (386)
463 PF10395 Utp8: Utp8 family; I 82.9 34 0.00074 30.4 13.0 32 18-49 129-160 (670)
464 PF07676 PD40: WD40-like Beta 82.7 4.6 9.9E-05 20.3 5.1 31 15-45 5-38 (39)
465 PF03088 Str_synth: Strictosid 82.5 9.6 0.00021 23.8 7.9 42 37-83 34-75 (89)
466 COG5276 Uncharacterized conser 82.1 23 0.00049 27.9 18.1 155 65-285 89-244 (370)
467 PF08728 CRT10: CRT10; InterP 82.1 9.4 0.0002 34.1 7.8 84 9-93 155-245 (717)
468 KOG4460 Nuclear pore complex, 82.0 32 0.00069 29.5 11.2 34 254-287 167-203 (741)
469 PHA02790 Kelch-like protein; P 81.7 33 0.00071 29.5 14.9 66 29-98 318-388 (480)
470 PF01011 PQQ: PQQ enzyme repea 81.6 5.1 0.00011 20.1 4.9 28 32-59 2-29 (38)
471 PF14779 BBS1: Ciliary BBSome 80.6 20 0.00044 27.5 8.3 55 222-279 196-255 (257)
472 COG5167 VID27 Protein involved 79.0 7.9 0.00017 32.8 6.1 61 29-95 573-633 (776)
473 TIGR02604 Piru_Ver_Nterm putat 78.7 35 0.00076 28.0 14.0 59 207-271 126-202 (367)
474 PF14779 BBS1: Ciliary BBSome 78.4 29 0.00062 26.8 9.2 73 17-91 175-255 (257)
475 PF13570 PQQ_3: PQQ-like domai 78.4 7.1 0.00015 19.8 4.2 18 266-283 23-40 (40)
476 PF12768 Rax2: Cortical protei 78.4 8.6 0.00019 30.1 6.0 56 230-286 15-76 (281)
477 PF13449 Phytase-like: Esteras 78.2 34 0.00074 27.6 14.5 121 154-282 90-249 (326)
478 PF01731 Arylesterase: Arylest 77.1 15 0.00032 22.8 6.1 31 253-283 54-85 (86)
479 PF09826 Beta_propel: Beta pro 75.5 54 0.0012 28.5 20.5 56 40-98 304-359 (521)
480 TIGR02604 Piru_Ver_Nterm putat 74.7 46 0.001 27.3 15.7 70 19-94 14-99 (367)
481 COG5308 NUP170 Nuclear pore co 74.0 35 0.00076 31.4 8.9 39 250-288 243-281 (1263)
482 PF10214 Rrn6: RNA polymerase 73.1 78 0.0017 29.2 17.1 87 9-98 133-236 (765)
483 PF10647 Gmad1: Lipoprotein Lp 73.0 41 0.00088 25.9 20.6 66 20-92 25-93 (253)
484 PF14870 PSII_BNR: Photosynthe 72.5 47 0.001 26.5 18.4 153 63-279 145-301 (302)
485 COG3823 Glutamine cyclotransfe 70.7 42 0.0009 25.1 8.4 107 161-287 56-163 (262)
486 KOG3616 Selective LIM binding 70.5 85 0.0018 28.6 12.4 70 18-94 14-83 (1636)
487 TIGR03606 non_repeat_PQQ dehyd 70.1 69 0.0015 27.3 11.8 108 154-273 35-166 (454)
488 KOG3522 Predicted guanine nucl 69.9 34 0.00074 31.1 7.9 59 224-284 638-699 (925)
489 PF14727 PHTB1_N: PTHB1 N-term 69.8 66 0.0014 27.0 21.6 59 31-94 146-204 (418)
490 PF07995 GSDH: Glucose / Sorbo 69.7 58 0.0013 26.3 23.3 57 220-277 271-330 (331)
491 PF01731 Arylesterase: Arylest 67.3 17 0.00036 22.6 4.2 30 151-181 56-85 (86)
492 PF08954 DUF1900: Domain of un 66.2 16 0.00034 25.0 4.3 55 18-72 10-66 (136)
493 PF05935 Arylsulfotrans: Aryls 63.3 98 0.0021 26.6 14.5 60 29-95 114-176 (477)
494 PF03088 Str_synth: Strictosid 61.2 24 0.00051 22.1 4.1 45 224-270 30-74 (89)
495 PF12768 Rax2: Cortical protei 61.1 80 0.0017 24.9 10.7 90 172-280 16-121 (281)
496 KOG1896 mRNA cleavage and poly 60.8 1.7E+02 0.0036 28.4 12.3 31 206-239 1183-1213(1366)
497 PF06739 SBBP: Beta-propeller 59.6 18 0.00039 18.3 2.9 22 253-274 13-34 (38)
498 smart00036 CNH Domain found in 59.1 90 0.002 24.9 20.7 61 29-96 12-75 (302)
499 PF07995 GSDH: Glucose / Sorbo 58.3 99 0.0021 25.0 10.5 78 9-89 244-330 (331)
500 COG4247 Phy 3-phytase (myo-ino 54.2 1E+02 0.0022 23.9 14.6 32 65-98 58-89 (364)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-42 Score=255.46 Aligned_cols=268 Identities=18% Similarity=0.299 Sum_probs=204.3
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.++-..+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|.+- |.|++|+| ||..|++|+.||+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W--VlcvawsP--Dgk~iASG~~dg~ 180 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNW--VLCVAWSP--DGKKIASGSKDGS 180 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccE--EEEEEECC--CcchhhccccCCe
Confidence 3667789999999999999999999999999999999999999999999999955 99999999 9999999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEE--EEEeeccc----CccceeccCCCCceeeecccCccccccCCCCCC--cccCCC
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYH--FCKLSLVK----EPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAE 159 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (291)
|++||.++++.... .+..+... ...+.+.. ..........+...+|++...... ..+.+|.. .+.-..
T Consensus 181 I~lwdpktg~~~g~---~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGR---ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGHTASVTCVRWG 256 (480)
T ss_pred EEEecCCCCCcccc---cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE-EEeccCccceEEEEEc
Confidence 99999999886543 23333322 22222221 112233445567777887665443 35667766 444445
Q ss_pred CCcEEEEecCCcCeEEEEeCCCcceeeEecccccC--------------CCCCC--------------------------
Q 022870 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--------------GSPNF-------------------------- 199 (291)
Q Consensus 160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~--------------~~~~~-------------------------- 199 (291)
|+.++. +|+.|++|++|+...+.+...++....- ....|
T Consensus 257 G~gliy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 257 GEGLIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred CCceEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 555655 8999999999998876655444311000 00000
Q ss_pred ---------------------------CCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870 200 ---------------------------SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (291)
Q Consensus 200 ---------------------------~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (291)
...+...+..+. |+|+ ++ ++++++-|..|++||.++ ++.+.+|++|-
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~-fSPd---~r-~IASaSFDkSVkLW~g~t-Gk~lasfRGHv 409 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS-FSPD---GR-YIASASFDKSVKLWDGRT-GKFLASFRGHV 409 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEE-ECCC---cc-EEEEeecccceeeeeCCC-cchhhhhhhcc
Confidence 001123456676 9998 55 999999999999999999 99999999999
Q ss_pred cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+.|+.++|+.|.++|++||.|.++++|++++.++.+-+
T Consensus 410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 99999999999999999999999999999999887543
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.5e-41 Score=251.45 Aligned_cols=245 Identities=18% Similarity=0.284 Sum_probs=205.4
Q ss_pred CceEEecCCccceeEEEEcCC--CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (291)
..+.+|.||++.|.++.|+|. +..+|||+.||++++|++++..++..+.+|... |..++|+| +|++|+|++.|.
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R--Vs~VafHP--sG~~L~TasfD~ 283 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR--VSRVAFHP--SGKFLGTASFDS 283 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh--heeeeecC--CCceeeeccccc
Confidence 678999999999999999995 678999999999999999998999999999955 99999999 999999999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (291)
+=++||++++.... ....+......+.+.+.++-. ..........+|+++.++.+.. +.+|.+ ++|+|+|-.
T Consensus 284 tWRlWD~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~-~tGGlD~~~RvWDlRtgr~im~-L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 284 TWRLWDLETKSELL--LQEGHSKGVFSIAFQPDGSLA-ATGGLDSLGRVWDLRTGRCIMF-LAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred chhhcccccchhhH--hhcccccccceeEecCCCcee-eccCccchhheeecccCcEEEE-ecccccceeeEeECCCceE
Confidence 99999999987543 334455555555554443221 1222334567899998887654 555777 999999944
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
+| +|+.|++++|||++..+.+.+++ +| ...+..+. |+|. .|+ +|++++.|++++||..++ .
T Consensus 360 -lA-Tgs~Dnt~kVWDLR~r~~ly~ip--------AH----~nlVS~Vk-~~p~--~g~-fL~TasyD~t~kiWs~~~-~ 420 (459)
T KOG0272|consen 360 -LA-TGSSDNTCKVWDLRMRSELYTIP--------AH----SNLVSQVK-YSPQ--EGY-FLVTASYDNTVKIWSTRT-W 420 (459)
T ss_pred -Ee-ecCCCCcEEEeeecccccceecc--------cc----cchhhheE-eccc--CCe-EEEEcccCcceeeecCCC-c
Confidence 44 78889999999999999988888 77 44677776 9995 266 999999999999999998 9
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
.+++++.||++.|.++..++++.+++|++.|.++++|.
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=244.09 Aligned_cols=250 Identities=17% Similarity=0.225 Sum_probs=200.6
Q ss_pred cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
-|-+.+|..+.|++++..|+||+.+|.++||+..+.+.+.++.+|... |.++.|+|..++..++||+.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~--v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR--VGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc--eeeEEEccCCCccceeeeccCCceeeeccC
Confidence 356789999999999999999999999999999999999999999966 999999995335699999999999999999
Q ss_pred CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCC
Q 022870 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 170 (291)
+...+. .++.+........|.+.+.....+.. ...-..|++..... .....+|.. ++|+|||. ++++|+.
T Consensus 250 ~e~~l~--~l~gH~~RVs~VafHPsG~~L~Tasf-D~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS--L~~tGGl 323 (459)
T KOG0272|consen 250 QETPLQ--DLEGHLARVSRVAFHPSGKFLGTASF-DSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS--LAATGGL 323 (459)
T ss_pred CCcchh--hhhcchhhheeeeecCCCceeeeccc-ccchhhcccccchh-hHhhcccccccceeEecCCCc--eeeccCc
Confidence 875443 22223333444444444333322222 12223344444332 234567766 99999996 3448889
Q ss_pred cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (291)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (291)
|..-+|||++++.++..+. +|.. .++++. |+|+ |+ .|++|+.|++++|||++. .+++..+.+
T Consensus 324 D~~~RvWDlRtgr~im~L~--------gH~k----~I~~V~-fsPN---Gy-~lATgs~Dnt~kVWDLR~-r~~ly~ipA 385 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLA--------GHIK----EILSVA-FSPN---GY-HLATGSSDNTCKVWDLRM-RSELYTIPA 385 (459)
T ss_pred cchhheeecccCcEEEEec--------cccc----ceeeEe-ECCC---ce-EEeecCCCCcEEEeeecc-cccceeccc
Confidence 9999999999999999998 7844 677887 9998 66 999999999999999998 888999999
Q ss_pred cccceeEEEeec-CCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 251 HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 251 h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
|..-|+.+.|+| .|.+|+|+|.|++++||..++..+++++
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999998 8899999999999999999999888765
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-39 Score=240.03 Aligned_cols=246 Identities=19% Similarity=0.253 Sum_probs=196.7
Q ss_pred CCceEEecCCccceeEEEEcC-----CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 8 PDPVAVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
.+....|.||+..|++++|.| ..++||+++.||.|+|||+..+.++..+.+|..+ |+|+.|-- + .++++|
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG--~-gliySg 264 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGG--E-GLIYSG 264 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcC--C-ceEEec
Confidence 344678999999999999987 4669999999999999999999999999999955 99999986 4 899999
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeec-----------ccCc------------------------cceec
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL-----------VKEP------------------------YANAK 127 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------------------------~~~~~ 127 (291)
+.|++|++|+...+.+.+ .+..+.+-......+. .... .....
T Consensus 265 S~DrtIkvw~a~dG~~~r--~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCR--ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred CCCceEEEEEccchhHHH--hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 999999999999887655 2222222222222210 0000 01222
Q ss_pred cCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCc
Q 022870 128 QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (291)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (291)
.++.....|+-.........+.+|+. +.|+||++++. +++.|..|++||.++++.+.+|. ||
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA--SaSFDkSVkLW~g~tGk~lasfR--------GH---- 408 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA--SASFDKSVKLWDGRTGKFLASFR--------GH---- 408 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE--EeecccceeeeeCCCcchhhhhh--------hc----
Confidence 33334444555555556667888887 99999997544 78889999999999999999998 78
Q ss_pred ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
-+.++.++ |+.| .+ +|++|+.|.++++||+++ .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 409 v~~VYqva-wsaD---sR-LlVS~SkDsTLKvw~V~t-kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVA-WSAD---SR-LLVSGSKDSTLKVWDVRT-KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEE-eccC---cc-EEEEcCCCceEEEEEeee-eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 44678887 9987 44 999999999999999998 888899999999999999999999999999999999995
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-39 Score=259.13 Aligned_cols=211 Identities=21% Similarity=0.344 Sum_probs=184.6
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
....++.||.++|..+.|+|+.++|++++.|++||+|.+.+..++-..++|.. ||+.+.|+| -|-+++|+|.|++-
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~--PVwdV~F~P--~GyYFatas~D~tA 517 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA--PVWDVQFAP--RGYYFATASHDQTA 517 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCc--ceeeEEecC--CceEEEecCCCcee
Confidence 34567999999999999999999999999999999999999999999999984 599999999 89999999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++|........+ ++..+-....+ +.|+|+..+++ +|
T Consensus 518 rLWs~d~~~PlR--ifaghlsDV~c----------------------------------------v~FHPNs~Y~a--TG 553 (707)
T KOG0263|consen 518 RLWSTDHNKPLR--IFAGHLSDVDC----------------------------------------VSFHPNSNYVA--TG 553 (707)
T ss_pred eeeecccCCchh--hhcccccccce----------------------------------------EEECCcccccc--cC
Confidence 999988754433 22222111111 55999987665 89
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
+.|.+|++||+.++..++.|. || .+.+.+++ |+|+ |+ +|++|+.||.|.+||+.+ +.++..+
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~--------GH----~~~V~al~-~Sp~---Gr-~LaSg~ed~~I~iWDl~~-~~~v~~l 615 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFT--------GH----KGPVTALA-FSPC---GR-YLASGDEDGLIKIWDLAN-GSLVKQL 615 (707)
T ss_pred CCCceEEEEEcCCCcEEEEec--------CC----CCceEEEE-EcCC---Cc-eEeecccCCcEEEEEcCC-Ccchhhh
Confidence 999999999999999999998 87 56788887 9998 66 999999999999999998 8999999
Q ss_pred cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
.+|.+.|.+|.|+.+|..||+||.|++|++||+..-.
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999999999999999999987543
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-38 Score=228.01 Aligned_cols=214 Identities=22% Similarity=0.358 Sum_probs=181.2
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
+.+++.|+||+..|..+..++||++.++++.|+++++||+.+++..+.|.+|... |.+++|++ |.+++++|+.|.+
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d--Vlsva~s~--dn~qivSGSrDkT 128 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD--VLSVAFST--DNRQIVSGSRDKT 128 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc--eEEEEecC--CCceeecCCCcce
Confidence 4678999999999999999999999999999999999999999999999999966 99999999 9899999999999
Q ss_pred EEEEECCCCCCCCCCccccccce---EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNS---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
|++||+..... +++.... ...| +.|+|.....+
T Consensus 129 iklwnt~g~ck-----~t~~~~~~~~WVsc---------------------------------------vrfsP~~~~p~ 164 (315)
T KOG0279|consen 129 IKLWNTLGVCK-----YTIHEDSHREWVSC---------------------------------------VRFSPNESNPI 164 (315)
T ss_pred eeeeeecccEE-----EEEecCCCcCcEEE---------------------------------------EEEcCCCCCcE
Confidence 99999886532 2332221 1122 56999865555
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
+++++.|++|++||+++.+....+. +| .+.+..+. ++||++ ..++|+.||.+.+||++. ++.
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~--------gh----~~~v~t~~-vSpDGs----lcasGgkdg~~~LwdL~~-~k~ 226 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFI--------GH----SGYVNTVT-VSPDGS----LCASGGKDGEAMLWDLNE-GKN 226 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccc--------cc----cccEEEEE-ECCCCC----EEecCCCCceEEEEEccC-Cce
Confidence 5588899999999999998888777 76 55777776 999954 999999999999999998 777
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
++.+. |...|.+++|+|+...|+.+. +..|+|||++++.++..
T Consensus 227 lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 227 LYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEE 269 (315)
T ss_pred eEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhh
Confidence 77776 689999999999987776665 55699999999988754
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=213.75 Aligned_cols=222 Identities=18% Similarity=0.292 Sum_probs=176.4
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
+.|+.++++|++.|+++.|..+|+.++||+.||++||||++...+.+.++ |. ++|.++..+| +...|++|..+|.
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~--spVn~vvlhp--nQteLis~dqsg~ 147 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HN--SPVNTVVLHP--NQTELISGDQSGN 147 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CC--CCcceEEecC--CcceEEeecCCCc
Confidence 35899999999999999999999999999999999999999877766665 33 5699999999 7789999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
|++||+.+..+..+++..... ... . ++..|+|..+.+
T Consensus 148 irvWDl~~~~c~~~liPe~~~-~i~-s---------------------------------------l~v~~dgsml~a-- 184 (311)
T KOG0315|consen 148 IRVWDLGENSCTHELIPEDDT-SIQ-S---------------------------------------LTVMPDGSMLAA-- 184 (311)
T ss_pred EEEEEccCCccccccCCCCCc-cee-e---------------------------------------EEEcCCCcEEEE--
Confidence 999999988665532222111 000 0 457899987764
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
+...|..++|++-..+....+.... ....| ++.+..+. |+|+. + +|++++.|.+++||+.++.-+....
T Consensus 185 ~nnkG~cyvW~l~~~~~~s~l~P~~--k~~ah----~~~il~C~-lSPd~---k-~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTASELEPVH--KFQAH----NGHILRCL-LSPDV---K-YLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred ecCCccEEEEEccCCCccccceEhh--heecc----cceEEEEE-ECCCC---c-EEEeecCCceEEEEecCCceeeEEE
Confidence 3446999999997754333222100 00033 55677776 99984 4 9999999999999999985466778
Q ss_pred ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
+++|..+++.++|+.+|.||++++.|+.+++|+++.++.++
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 89999999999999999999999999999999999998664
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-36 Score=216.82 Aligned_cols=219 Identities=20% Similarity=0.284 Sum_probs=183.2
Q ss_pred CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCC-----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
....+|++|++.|+.++..+. ...+++++.|.++.+|++.. |..++.+.+|.+. |..+..++ +|++.+++
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~--v~dv~~s~--dg~~alS~ 81 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF--VSDVVLSS--DGNFALSA 81 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE--ecceEEcc--CCceEEec
Confidence 345689999999999999984 67899999999999998754 6678899999977 99999999 99999999
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
+.|+++++||+.+++..+ .+..+...... ++|+++++.
T Consensus 82 swD~~lrlWDl~~g~~t~--~f~GH~~dVls----------------------------------------va~s~dn~q 119 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTR--RFVGHTKDVLS----------------------------------------VAFSTDNRQ 119 (315)
T ss_pred cccceEEEEEecCCcEEE--EEEecCCceEE----------------------------------------EEecCCCce
Confidence 999999999999985432 12222111111 669999987
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
++ +|+.|++|++|++... +..++.. +. .+..+.++. |+|+.. . .+|++++.|++|++||+++ .
T Consensus 120 iv--SGSrDkTiklwnt~g~-ck~t~~~--------~~--~~~WVscvr-fsP~~~-~-p~Ivs~s~DktvKvWnl~~-~ 182 (315)
T KOG0279|consen 120 IV--SGSRDKTIKLWNTLGV-CKYTIHE--------DS--HREWVSCVR-FSPNES-N-PIIVSASWDKTVKVWNLRN-C 182 (315)
T ss_pred ee--cCCCcceeeeeeeccc-EEEEEec--------CC--CcCcEEEEE-EcCCCC-C-cEEEEccCCceEEEEccCC-c
Confidence 76 9999999999999754 5555542 21 167899997 999843 2 2999999999999999998 8
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+....+.+|.+.++.++++|||...++|+.||.+.+||++.++.++.+
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 888999999999999999999999999999999999999999988764
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-36 Score=216.74 Aligned_cols=244 Identities=17% Similarity=0.263 Sum_probs=192.7
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-------------------------------
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW------------------------------- 57 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------- 57 (291)
+..++|+||.+.|.++.|++|.+++++++.||.+.|||.-+.+.++-++
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3458899999999999999999999999999999999987755444333
Q ss_pred -----------------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeeccc
Q 022870 58 -----------------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120 (291)
Q Consensus 58 -----------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (291)
+|.+- +.|+.|.+ | ..|+|++.|.+..+||+++++... .++.+......+++..
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgy--lScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~----~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGY--LSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQ----VFHGHTGDVMSLSLSP 196 (343)
T ss_pred cccccccccceeeeeecCccce--eEEEEEcC--C-CceEecCCCceEEEEEcccceEEE----EecCCcccEEEEecCC
Confidence 44433 66666666 5 778888888899999999887644 4444444444444444
Q ss_pred Ccc--ceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC
Q 022870 121 EPY--ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG 194 (291)
Q Consensus 121 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~ 194 (291)
+.. ...........+|+++.. .....+.+|.. ++|.|+|..+. +|+.|++.++||+|..+.+..+..
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afa--tGSDD~tcRlyDlRaD~~~a~ys~---- 269 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFA--TGSDDATCRLYDLRADQELAVYSH---- 269 (343)
T ss_pred CCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeee--ecCCCceeEEEeecCCcEEeeecc----
Confidence 222 222333456677888887 44456777766 99999997554 899999999999999988888873
Q ss_pred CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (291)
......+.++. |+.. |+ +|++|..|..+.+||.-. ++.+..|.+|+..|+++..+|||..|+|||.|.
T Consensus 270 ------~~~~~gitSv~-FS~S---GR-lLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 270 ------DSIICGITSVA-FSKS---GR-LLFAGYDDFTCNVWDTLK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred ------CcccCCceeEE-Eccc---cc-EEEeeecCCceeEeeccc-cceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 22456678887 9987 66 999999999999999987 888999999999999999999999999999999
Q ss_pred eEEEEE
Q 022870 275 KIVLYN 280 (291)
Q Consensus 275 ~i~vw~ 280 (291)
.+|||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-36 Score=227.20 Aligned_cols=244 Identities=17% Similarity=0.304 Sum_probs=192.3
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
+..|++|+|+.+|..||+|+.||.+++|+. +|..+.++..|+++ |.++.|+. .|++|++++.|+++.+||..++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgP--I~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGP--IFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCc--eEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 467999999999999999999999999995 68888888888854 99999999 99999999999999999998887
Q ss_pred CCCCCccccccceEEEEEeecccCccceec--cCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCc
Q 022870 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAK--QANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQL 171 (291)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d 171 (291)
..+ .++++..+. ..+.+....... ...+...++.+...+... .+.+|.. +.|+|.+.. ++ +++.|
T Consensus 310 ~~q--~f~~~s~~~----lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~-t~~GH~g~V~alk~n~tg~L-La-S~SdD 380 (524)
T KOG0273|consen 310 VKQ--QFEFHSAPA----LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK-TFIGHHGEVNALKWNPTGSL-LA-SCSDD 380 (524)
T ss_pred EEE--eeeeccCCc----cceEEecCceEeecCCCceEEEEEecCCCcce-eeecccCceEEEEECCCCce-EE-EecCC
Confidence 644 334443331 112222222222 233345555555544444 4455766 899999964 44 67789
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCC-----CceEEEeecCCCcEEEEEccCCCCcee
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ-----GFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-----g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
++++||.+........+. +|.. .++.+. |+|.++- ....+++++.|++|++||+.. +.++.
T Consensus 381 ~TlkiWs~~~~~~~~~l~--------~Hsk----ei~t~~-wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i~ 446 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSVHDLQ--------AHSK----EIYTIK-WSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPIH 446 (524)
T ss_pred CeeEeeecCCCcchhhhh--------hhcc----ceeeEe-ecCCCCccCCCcCCceEEEeecCCeEEEEEccC-CceeE
Confidence 999999999888888887 6744 456665 8886431 123799999999999999998 99999
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
.|..|..+|.+++|+|+|+++|+|+.||.|.+|+.++++++++
T Consensus 447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 9999999999999999999999999999999999999999876
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=219.20 Aligned_cols=216 Identities=22% Similarity=0.365 Sum_probs=185.0
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
.|-+..+.+.||.+.|.|+++.|-..+|++|+.|++++|||+.++++..++.+|... |..+++++ ...++++++.|
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~--rHpYlFs~ged 214 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSK--RHPYLFSAGED 214 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecc--cCceEEEecCC
Confidence 355778899999999999999999999999999999999999999999999999966 99999999 77899999999
Q ss_pred CeEEEEECCCCCCCCCCccccccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
+.|+.||++.++.++ ..+.+-. ..+ ++.+|.-+.++
T Consensus 215 k~VKCwDLe~nkvIR----~YhGHlS~V~~---------------------------------------L~lhPTldvl~ 251 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIR----HYHGHLSGVYC---------------------------------------LDLHPTLDVLV 251 (460)
T ss_pred CeeEEEechhhhhHH----HhccccceeEE---------------------------------------EeccccceeEE
Confidence 999999999987654 2222211 111 45777766444
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
+|+.|..+++||+++...+..+. ||.. .+.++. +.|.++ .+++|+.|++|++||++. ++.
T Consensus 252 --t~grDst~RvWDiRtr~~V~~l~--------GH~~----~V~~V~-~~~~dp----qvit~S~D~tvrlWDl~a-gkt 311 (460)
T KOG0285|consen 252 --TGGRDSTIRVWDIRTRASVHVLS--------GHTN----PVASVM-CQPTDP----QVITGSHDSTVRLWDLRA-GKT 311 (460)
T ss_pred --ecCCcceEEEeeecccceEEEec--------CCCC----cceeEE-eecCCC----ceEEecCCceEEEeeecc-Cce
Confidence 78889999999999999999998 8844 566665 777643 699999999999999998 899
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
+..+..|...|.+++.+|....+|++|.|. |+-|++..+.+++.
T Consensus 312 ~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 312 MITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN 355 (460)
T ss_pred eEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc
Confidence 999999999999999999999999999885 99999999988765
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.4e-34 Score=205.63 Aligned_cols=257 Identities=16% Similarity=0.228 Sum_probs=202.7
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.|+..+.||++.|+.+.|+|+|.+||||+.|..|.+|++. ..+....+++|.++ |..+.|.+ |++.+++++.|.+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA--VM~l~~~~--d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA--VMELHGMR--DGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce--eEeeeecc--CCCEEEEecCCce
Confidence 4566788999999999999999999999999999999954 45667788899966 99999999 9999999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEE
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 165 (291)
|+.||.++++... ....+..-...+...-................+|+++....+.......+. +.|.-++...+
T Consensus 114 v~~wD~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~- 190 (338)
T KOG0265|consen 114 VRGWDAETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI- 190 (338)
T ss_pred EEEEecccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee-
Confidence 9999999998755 222332223333222223334455666777888998877665544333333 77888887777
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC---C
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---G 242 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~---~ 242 (291)
+|.-|+.|++||++.+.....+. ||.+ .++.+. .+|++. ++.+-+.|.++++||++-. .
T Consensus 191 -sggIdn~ikvWd~r~~d~~~~ls--------Gh~D----tIt~ls-ls~~gs----~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 191 -SGGIDNDIKVWDLRKNDGLYTLS--------GHAD----TITGLS-LSRYGS----FLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred -eccccCceeeeccccCcceEEee--------cccC----ceeeEE-eccCCC----ccccccccceEEEEEecccCCCC
Confidence 78889999999999999999998 8855 566665 888844 8999999999999999841 2
Q ss_pred Cceeecccccc----ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 243 IPLTAMKVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 243 ~~~~~~~~h~~----~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+++..+.+|.. ....++|+|++..+.+|+.|..+++||..+.++++.+
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc
Confidence 44677777643 4567899999999999999999999999998888764
No 13
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-34 Score=199.46 Aligned_cols=255 Identities=15% Similarity=0.203 Sum_probs=199.7
Q ss_pred CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
..|.+.++++..|+++|+++.|+-+|+|.++++.|.+|++|+...+.++++..+|..+ |..++.+. |...|++++.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~Gg 79 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGG 79 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCC
Confidence 3566788999999999999999999999999999999999999999999999999977 99999998 8899999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccC-CCCCC--cccCCCC
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDS-LCDSK--DDVPAEG 160 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~ 160 (291)
|..+.+||+++++..+ .+..+......+.+..... ............|+.+.......+. ..... ....-.+
T Consensus 80 Dk~v~vwDV~TGkv~R----r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDR----RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred CceEEEEEcccCeeee----ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 9999999999998866 4444433333333332222 2334445667788877665333322 22222 3333344
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
..++ +|+.||+++.||++.++....+- +| ++.++. |++++ . ..++++.|+.|++.|-.+
T Consensus 156 heIv--aGS~DGtvRtydiR~G~l~sDy~--------g~------pit~vs-~s~d~---n-c~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 156 HEIV--AGSVDGTVRTYDIRKGTLSSDYF--------GH------PITSVS-FSKDG---N-CSLASSLDSTLRLLDKET 214 (307)
T ss_pred cEEE--eeccCCcEEEEEeecceeehhhc--------CC------cceeEE-ecCCC---C-EEEEeeccceeeecccch
Confidence 3344 79999999999999998766554 33 677887 99984 4 899999999999999998
Q ss_pred CCCceeecccccccee--EEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 241 PGIPLTAMKVHLEPVL--CLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 241 ~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
++.++.+++|...=. ..++......+++||+||.|++||+...+++.+
T Consensus 215 -GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 215 -GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred -hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 999999999987544 446677777899999999999999998887754
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-34 Score=213.34 Aligned_cols=257 Identities=17% Similarity=0.253 Sum_probs=199.3
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|... |..++|+. .|.++++++.|-.+
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a--~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDA--SGKYLATCSSDLSA 174 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEec--CccEEEecCCccch
Confidence 456678889999999999999999999999999999999999999999999965 99999999 89999999999999
Q ss_pred EEEECCCC-CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870 89 KCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (291)
Q Consensus 89 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 163 (291)
++||..+. ++.. ....+.+......+-+.... ............|++..+..+. .+.+|.. ++.+.|| .
T Consensus 175 ~LWd~~~~~~c~k--s~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~~DG--t 248 (406)
T KOG0295|consen 175 KLWDFDTFFRCIK--SLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVNQDG--T 248 (406)
T ss_pred hheeHHHHHHHHH--HhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEE-eccCchHhEEEEEecCCe--e
Confidence 99999873 2221 12223333333333333311 2222233445667776665443 4566666 5666666 3
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC------------CCCCceEEEeecCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------KSQGFVNVLAGYEDG 231 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~g~~~l~~g~~dg 231 (291)
++++++.|.++++|-+.++++...+. .|+.+ +-+++ |.|. ...++ ++.+++.|+
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR--------~hEh~----vEci~-wap~~~~~~i~~at~~~~~~~-~l~s~SrDk 314 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELR--------EHEHP----VECIA-WAPESSYPSISEATGSTNGGQ-VLGSGSRDK 314 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhh--------ccccc----eEEEE-ecccccCcchhhccCCCCCcc-EEEeecccc
Confidence 44478889999999999998888777 56443 33333 5553 11234 999999999
Q ss_pred cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+|++||+.+ +.++.++.+|..+|.+++|+|.|+||+|+.+|+++++||+++.++.+++
T Consensus 315 tIk~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 315 TIKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred eEEEEeccC-CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence 999999999 8999999999999999999999999999999999999999999988764
No 15
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=227.20 Aligned_cols=256 Identities=16% Similarity=0.231 Sum_probs=217.3
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
.+++..|+..|.++.|+|....++++-.+|.|.|||.++...+++++... .||.+..|.+ ..+.+++|+.|..|++
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~--~PvRa~kfia--RknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE--VPVRAAKFIA--RKNWIVTGSDDMQIRV 81 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc--cchhhheeee--ccceEEEecCCceEEE
Confidence 34566799999999999999999999999999999999999999998877 5599999999 7789999999999999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (291)
|+..+.+.+. .+..+..........+ ..|......+......|+.+........+.+|.. ++|+|...+.++
T Consensus 82 fnynt~ekV~--~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa- 157 (794)
T KOG0276|consen 82 FNYNTGEKVK--TFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA- 157 (794)
T ss_pred EecccceeeE--EeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee-
Confidence 9999997655 3333333333333322 2455566777888999999999999999999998 999999988887
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+++.|++|++|.+.+..+..+++ +|... +.++. |-|.+ .+.+|++|++|..|+|||.++ ..+++
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~--------gHekG----VN~Vd-yy~~g--dkpylIsgaDD~tiKvWDyQt-k~CV~ 221 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLE--------GHEKG----VNCVD-YYTGG--DKPYLISGADDLTIKVWDYQT-KSCVQ 221 (794)
T ss_pred eeeccccEEEEEcCCCCCceeee--------ccccC----cceEE-eccCC--CcceEEecCCCceEEEeecch-HHHHH
Confidence 67889999999999999999999 88553 45555 77653 233999999999999999999 99999
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
++.||...|..+.|+|.-..++|||+||++|||+-.+.++..++
T Consensus 222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence 99999999999999999999999999999999999988776554
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=214.61 Aligned_cols=259 Identities=16% Similarity=0.209 Sum_probs=182.6
Q ss_pred CCCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeE
Q 022870 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (291)
Q Consensus 3 ~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (291)
+...|.+..+++..|+++|+-+.||++|++||+++.|.+..+|++... +..+++.+|.. +|.-+.|+| |.++|
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~--~V~yi~wSP--DdryL 284 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ--PVSYIMWSP--DDRYL 284 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC--ceEEEEECC--CCCeE
Confidence 445677888999999999999999999999999999999999987543 45778888884 499999999 99999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc----------------
Q 022870 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET---------------- 143 (291)
Q Consensus 80 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 143 (291)
++++.|..+.+||+.++.+....... .......+.+.+..........+ .....|+.+....
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~d-r~i~~wdlDgn~~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPD-RTIIMWDLDGNILGNWEGVRDPKVHDLAI 362 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCC-CcEEEecCCcchhhcccccccceeEEEEE
Confidence 99999999999999999875421111 23344555555554432221111 1111111111100
Q ss_pred ------------------------ccc-cCCCCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870 144 ------------------------VDT-DSLCDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (291)
Q Consensus 144 ------------------------~~~-~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~ 195 (291)
... ....++. .+.+.+++..+ ..-.+..+++||++..+.++++.
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L--vnL~~qei~LWDl~e~~lv~kY~------ 434 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL--VNLQDQEIHLWDLEENKLVRKYF------ 434 (519)
T ss_pred cCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE--EEcccCeeEEeecchhhHHHHhh------
Confidence 000 1111222 45556665444 33346778888888777777777
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCC-CeeEEecCCC
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQ 274 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg 274 (291)
||... ..+...+ |.-. +.. ++++|++|+.|+||+..+ ++++..+.||...|++++|+|.. .++|++|+||
T Consensus 435 --Ghkq~--~fiIrSC-Fgg~--~~~-fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 435 --GHKQG--HFIIRSC-FGGG--NDK-FIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred --ccccc--ceEEEec-cCCC--Ccc-eEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence 77553 2333332 6543 123 999999999999999998 99999999999999999998854 4689999999
Q ss_pred eEEEEEcCCC
Q 022870 275 KIVLYNLDHS 284 (291)
Q Consensus 275 ~i~vw~~~~~ 284 (291)
+||||.....
T Consensus 506 tIRIWg~~~~ 515 (519)
T KOG0293|consen 506 TIRIWGPSDN 515 (519)
T ss_pred eEEEecCCcc
Confidence 9999987643
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-33 Score=214.59 Aligned_cols=267 Identities=15% Similarity=0.231 Sum_probs=195.6
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe---eecCCcceEEEEEeecCCCCeEEEE
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
||.+...+++.|..-|+|+.|+|||.+++|++.||++.+||=.+++.+..+. .|.+. |.+++|+| |+.+++++
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGs--IfalsWsP--Ds~~~~T~ 253 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGS--IFALSWSP--DSTQFLTV 253 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcccc--EEEEEECC--CCceEEEe
Confidence 4557778899999999999999999999999999999999999999999998 77755 99999999 99999999
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 157 (291)
+.|.+++|||+.+.++..+ +.+... .....+...+ .........++....++..... +.....+|.. ++.+
T Consensus 254 SaDkt~KIWdVs~~slv~t--~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVST--WPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVS 329 (603)
T ss_pred cCCceEEEEEeeccceEEE--eecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEc
Confidence 9999999999999987652 222211 1111111111 2233344455556666666666 6777888888 8899
Q ss_pred CCCCcEEEEecCCcCeEEEEeCCCcceee-----------Eeccc----------------------ccCC----CCCC-
Q 022870 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCT-----------RLHQN----------------------SCGG----SPNF- 199 (291)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~-----------~~~~~----------------------~~~~----~~~~- 199 (291)
|++.+++ +|+.||.|.-||..++..-+ .+... .... ..++
T Consensus 330 ~d~~~i~--SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 330 PDGKTIY--SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred CCCCEEE--eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 9998777 89999999999986543210 00000 0000 0000
Q ss_pred ---------------------------------------------------------------------------CCCcc
Q 022870 200 ---------------------------------------------------------------------------SSKGR 204 (291)
Q Consensus 200 ---------------------------------------------------------------------------~~~~~ 204 (291)
..+++
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 01223
Q ss_pred eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
+.++.++ |+|+ +. +|++|...+.+.+||+.+.......+.-|.+.|.+++|+|+..++||||-|-.|.||+++..
T Consensus 488 a~iT~va-ySpd---~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 488 AAITDVA-YSPD---GA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CCceEEE-ECCC---Cc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 4456676 8887 44 88888888888888888733444456679999999999999999999999999999999876
Q ss_pred cee
Q 022870 285 TVS 287 (291)
Q Consensus 285 ~~~ 287 (291)
...
T Consensus 563 ~~~ 565 (603)
T KOG0318|consen 563 AKH 565 (603)
T ss_pred hhh
Confidence 543
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.1e-35 Score=223.23 Aligned_cols=256 Identities=17% Similarity=0.263 Sum_probs=198.6
Q ss_pred CCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
|.+.++++.||+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|.. +|..++|+. +|..+++++.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k--~Vrd~~~s~--~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK--PVRDASFNN--CGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchh--hhhhhhccc--cCCeeeeeec
Confidence 6678999999999999999999 899999999999999999876 899999999994 499999999 9999999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCcccccc---CCCCCCcccCCCC
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SLCDSKDDVPAEG 160 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 160 (291)
|+.|++||++++++.. .++... .....+.+.......+......+..|+++....+... +..-..+.|-++|
T Consensus 279 D~~lKlwDtETG~~~~----~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLS----RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred ceeeeeeccccceEEE----EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence 9999999999998754 444332 2334455555444455566677888899888754332 1112228899999
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEecccc--------------------------------------cCCCCCCCCC
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS--------------------------------------CGGSPNFSSK 202 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 202 (291)
++++ +.+.|+++++|+.+...++....... ...+.||.
T Consensus 355 ~rFi--ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~-- 430 (503)
T KOG0282|consen 355 RRFI--SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS-- 430 (503)
T ss_pred ceEe--eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee--
Confidence 8877 67779999999987654332211100 00001222
Q ss_pred cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEE
Q 022870 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYN 280 (291)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~ 280 (291)
..+..+.+. |+|+ |. +|++|..||.+.+||.++ .+.+..+++|.+++..+.|+|. ...+||++.||.|++|+
T Consensus 431 vaGys~~v~-fSpD---G~-~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 VAGYSCQVD-FSPD---GR-TLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCceeeEE-EcCC---CC-eEEeecCCccEEEeechh-hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 234566776 9999 55 999999999999999999 8999999999999999999874 33689999999999996
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.7e-34 Score=229.79 Aligned_cols=221 Identities=17% Similarity=0.293 Sum_probs=181.6
Q ss_pred CCCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-------------------------------
Q 022870 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------------------------------- 51 (291)
Q Consensus 3 ~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~------------------------------- 51 (291)
++..|.-+..++..-...++|..|++|+.+||.|-.|..|++|.+...+
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 3446667778887777889999999999999999999999999986311
Q ss_pred EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCC
Q 022870 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (291)
..+++-+|.++ |..+.|+| +.++|+++|+|+++|+|.+.+..+.. .+..+..+...
T Consensus 443 ~~~~L~GH~GP--Vyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V--~y~GH~~PVwd------------------ 498 (707)
T KOG0263|consen 443 TSRTLYGHSGP--VYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLV--IYKGHLAPVWD------------------ 498 (707)
T ss_pred eeEEeecCCCc--eeeeeecc--cccceeeccCCcceeeeecccceeEE--EecCCCcceee------------------
Confidence 13345678855 99999999 98999999999999999999876533 22222222211
Q ss_pred CceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEE
Q 022870 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
+.|+|.|- .|| +++.|++.++|.....++++.+. +|.. -+-++.
T Consensus 499 ----------------------V~F~P~Gy-YFa-tas~D~tArLWs~d~~~PlRifa--------ghls----DV~cv~ 542 (707)
T KOG0263|consen 499 ----------------------VQFAPRGY-YFA-TASHDQTARLWSTDHNKPLRIFA--------GHLS----DVDCVS 542 (707)
T ss_pred ----------------------EEecCCce-EEE-ecCCCceeeeeecccCCchhhhc--------cccc----ccceEE
Confidence 45888884 444 67889999999999988888888 7744 455665
Q ss_pred EecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
|+|+.. |+++|+.|.+||+||+.+ +..++.|.||.++|++++|+|+|++|++|+.||.|.+||+.+++++..
T Consensus 543 -FHPNs~----Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 543 -FHPNSN----YVATGSSDRTVRLWDVST-GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred -ECCccc----ccccCCCCceEEEEEcCC-CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence 999855 999999999999999999 899999999999999999999999999999999999999999887654
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.3e-33 Score=226.78 Aligned_cols=216 Identities=24% Similarity=0.391 Sum_probs=177.9
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC-CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..+.+.+|...|++++|+|++.++++|+.|++++|||+ ..+..++++++|... |++++|+| +++++++|+.|++|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~--v~~~~f~p--~g~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY--VTSVAFSP--DGNLLVSGSDDGTV 270 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc--eEEEEecC--CCCEEEEecCCCcE
Confidence 56777899999999999999999999999999999999 556899999999955 99999999 88999999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++||++++++.. .+..+...... ++|++++..++ ++
T Consensus 271 riWd~~~~~~~~--~l~~hs~~is~----------------------------------------~~f~~d~~~l~--s~ 306 (456)
T KOG0266|consen 271 RIWDVRTGECVR--KLKGHSDGISG----------------------------------------LAFSPDGNLLV--SA 306 (456)
T ss_pred EEEeccCCeEEE--eeeccCCceEE----------------------------------------EEECCCCCEEE--Ec
Confidence 999999976644 22222222222 45889987665 55
Q ss_pred CCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 169 EQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+.|+.|++||+.+++ +...+. ++... . .+..+. |+|+ +. ++++++.|+.+++||++. ...+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~-~-~~~~~~-fsp~---~~-~ll~~~~d~~~~~w~l~~-~~~~~ 370 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLS--------GAENS-A-PVTSVQ-FSPN---GK-YLLSASLDRTLKLWDLRS-GKSVG 370 (456)
T ss_pred CCCccEEEEECCCCceeeeeccc--------CCCCC-C-ceeEEE-ECCC---Cc-EEEEecCCCeEEEEEccC-Cccee
Confidence 779999999999998 456665 44332 2 677777 9998 44 999999999999999998 88889
Q ss_pred eccccccce---eEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 247 AMKVHLEPV---LCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 247 ~~~~h~~~v---~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
.+.+|...+ .+....+.+.++++|+.|+.|++|++.++..++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR 416 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence 999887753 3444488999999999999999999998776654
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.5e-32 Score=199.73 Aligned_cols=257 Identities=12% Similarity=0.191 Sum_probs=198.6
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..+.+|..|+++|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+.. |+++.|+. +|.+|+||+.+|.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS--Vt~~~Fsh--dgtlLATGdmsG~v 130 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS--VTCCSFSH--DGTLLATGDMSGKV 130 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc--eEEEEEcc--CceEEEecCCCccE
Confidence 457789999999999999999999999999999999999999999999999955 99999999 99999999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (291)
+||+..++.... .+.-......-..+.+ ......+....+..-+|.+... .....+.+|+. =.|.|+|++++
T Consensus 131 ~v~~~stg~~~~--~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 131 LVFKVSTGGEQW--KLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred EEEEcccCceEE--EeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEE
Confidence 999999987644 1111223333333443 2233444455556666666554 45556677766 67999999887
Q ss_pred EEecCCcCeEEEEeCCCcceeeEeccc------ccCC-C-----------------------------------------
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQN------SCGG-S----------------------------------------- 196 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~------~~~~-~----------------------------------------- 196 (291)
+|..||+|++||+.+++++..+... +... .
T Consensus 207 --tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~ 284 (399)
T KOG0296|consen 207 --TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE 284 (399)
T ss_pred --EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence 7888999999999999887776511 0000 0
Q ss_pred -----------------------------------CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 197 -----------------------------------PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 197 -----------------------------------~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
..|.-.....++.+. |-++ . +|++++.||.|+.||.|+
T Consensus 285 ~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~-w~~t-~----~l~t~c~~g~v~~wDaRt- 357 (399)
T KOG0296|consen 285 LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK-WLNT-D----YLLTACANGKVRQWDART- 357 (399)
T ss_pred hhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEE-EcCc-c----hheeeccCceEEeeeccc-
Confidence 000011122244554 5542 1 899999999999999999
Q ss_pred CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
++++..+.+|...|..++++|+.++++|+|.|++.+||+..
T Consensus 358 G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 358 GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999999999875
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=203.07 Aligned_cols=222 Identities=17% Similarity=0.271 Sum_probs=184.8
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
++++.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|. +.|..++.+. ||.++++++.|.+|
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~--ewvr~v~v~~--DGti~As~s~dqtl 259 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS--EWVRMVRVNQ--DGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch--HhEEEEEecC--CeeEEEecCCCceE
Confidence 4567788999999999999999999999999999999999999999999998 4599999998 99999999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++|-+.++++.. .+..+.++.....+.+........... =+.++..+++ ++
T Consensus 260 ~vW~~~t~~~k~--~lR~hEh~vEci~wap~~~~~~i~~at--------------------------~~~~~~~~l~-s~ 310 (406)
T KOG0295|consen 260 RVWVVATKQCKA--ELREHEHPVECIAWAPESSYPSISEAT--------------------------GSTNGGQVLG-SG 310 (406)
T ss_pred EEEEeccchhhh--hhhccccceEEEEecccccCcchhhcc--------------------------CCCCCccEEE-ee
Confidence 999999987644 556666666666555443211100000 0111223333 89
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
+.|++|++||+.++.++.++. +|.. .+..++ |+|. |+ ||+++.+|+++++||+++ .+++..+
T Consensus 311 SrDktIk~wdv~tg~cL~tL~--------ghdn----wVr~~a-f~p~---Gk-yi~ScaDDktlrvwdl~~-~~cmk~~ 372 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLV--------GHDN----WVRGVA-FSPG---GK-YILSCADDKTLRVWDLKN-LQCMKTL 372 (406)
T ss_pred cccceEEEEeccCCeEEEEEe--------cccc----eeeeeE-EcCC---Ce-EEEEEecCCcEEEEEecc-ceeeecc
Confidence 999999999999999999999 7844 566666 9998 65 999999999999999999 9999999
Q ss_pred cccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
..|...|+++.|+.+..+++||+.|..+++|.-
T Consensus 373 ~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 373 EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999974
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=218.43 Aligned_cols=213 Identities=20% Similarity=0.338 Sum_probs=176.0
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
+...+||-..+++++++|||+++|||+.||.|+|||..++-|..++..|... |+.+.|+. .++.+++++.||+|+.
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--Vt~v~f~~--~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--VTAVQFTA--RGNVLLSSSLDGTVRA 418 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCc--eEEEEEEe--cCCEEEEeecCCeEEe
Confidence 4566799999999999999999999999999999999999999999999955 99999999 8999999999999999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (291)
||+...+.-+ .++.+......+ ++..|.|..+. +|+.
T Consensus 419 wDlkRYrNfR--Tft~P~p~Qfsc---------------------------------------vavD~sGelV~--AG~~ 455 (893)
T KOG0291|consen 419 WDLKRYRNFR--TFTSPEPIQFSC---------------------------------------VAVDPSGELVC--AGAQ 455 (893)
T ss_pred eeecccceee--eecCCCceeeeE---------------------------------------EEEcCCCCEEE--eecc
Confidence 9998776544 233332222222 55777786433 5655
Q ss_pred cC-eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870 171 LS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (291)
Q Consensus 171 d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (291)
|. .|++|++++|+.+..+. ||. +++.++. |+|.++ .|++|+.|.+|++||+-.....+..+.
T Consensus 456 d~F~IfvWS~qTGqllDiLs--------GHE----gPVs~l~-f~~~~~----~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILS--------GHE----GPVSGLS-FSPDGS----LLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred ceEEEEEEEeecCeeeehhc--------CCC----CcceeeE-EccccC----eEEeccccceEEEEEeeccCceeeeEe
Confidence 54 59999999999999888 884 4666676 999844 999999999999999976334555555
Q ss_pred ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
+...+..++|.|+|+.|+.+..||.|.+||++......
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 57789999999999999999999999999998876553
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.3e-34 Score=210.87 Aligned_cols=202 Identities=20% Similarity=0.391 Sum_probs=152.7
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.++++|.||++.|.|+.|.. +.+++|+.|.+|++||+++++++.++-.|... |..+.|+. +++++++.|.++
T Consensus 228 ~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHcea--VLhlrf~n----g~mvtcSkDrsi 299 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--VLHLRFSN----GYMVTCSKDRSI 299 (499)
T ss_pred HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcce--eEEEEEeC----CEEEEecCCcee
Confidence 45667788888888888843 47888888888888888888888887777744 88888876 688888888888
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 166 (291)
.+||+....... + ...+.+|.. -...-+.++ ++
T Consensus 300 aVWdm~sps~it-----~--------------------------------------rrVLvGHrAaVNvVdfd~ky-IV- 334 (499)
T KOG0281|consen 300 AVWDMASPTDIT-----L--------------------------------------RRVLVGHRAAVNVVDFDDKY-IV- 334 (499)
T ss_pred EEEeccCchHHH-----H--------------------------------------HHHHhhhhhheeeeccccce-EE-
Confidence 888887654211 0 011111111 001223343 33
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+++.|.+|++|++.+.+.++++. +|.. -+-+++ |. |+ ++++|+.|.+|++||+.. +.++.
T Consensus 335 sASgDRTikvW~~st~efvRtl~--------gHkR----GIAClQ-Yr-----~r-lvVSGSSDntIRlwdi~~-G~cLR 394 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLN--------GHKR----GIACLQ-YR-----DR-LVVSGSSDNTIRLWDIEC-GACLR 394 (499)
T ss_pred EecCCceEEEEeccceeeehhhh--------cccc----cceehh-cc-----Ce-EEEecCCCceEEEEeccc-cHHHH
Confidence 66679999999999999999998 7733 344444 54 55 999999999999999999 99999
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
.++||+.-|.++.|+.. .+++|+.||+|+|||+..+.
T Consensus 395 vLeGHEeLvRciRFd~k--rIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred HHhchHHhhhheeecCc--eeeeccccceEEEEeccccc
Confidence 99999999999999877 79999999999999998754
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=189.51 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=175.3
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
..+.+.++++...+.|+.|...|++..||+|+. -.||+||+++++ ++.++++|... |+++.|.. +|+.+++||
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN--VtaVgF~~--dgrWMyTgs 102 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN--VTAVGFQC--DGRWMYTGS 102 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCc--eEEEEEee--cCeEEEecC
Confidence 456788899988889999999999999999886 479999998764 68899999855 99999999 999999999
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
+||+++|||++...+.+ .+... ....+ +..+|....+
T Consensus 103 eDgt~kIWdlR~~~~qR--~~~~~--spVn~---------------------------------------vvlhpnQteL 139 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQR--NYQHN--SPVNT---------------------------------------VVLHPNQTEL 139 (311)
T ss_pred CCceEEEEeccCcccch--hccCC--CCcce---------------------------------------EEecCCcceE
Confidence 99999999999866544 22222 11111 4477887777
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC--
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-- 241 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-- 241 (291)
+ +|..+|.|++||+....+...+..+ ....+.++. ..|+++ +++++...|..++|++-+.
T Consensus 140 i--s~dqsg~irvWDl~~~~c~~~liPe-----------~~~~i~sl~-v~~dgs----ml~a~nnkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 140 I--SGDQSGNIRVWDLGENSCTHELIPE-----------DDTSIQSLT-VMPDGS----MLAAANNKGNCYVWRLLNHQT 201 (311)
T ss_pred E--eecCCCcEEEEEccCCccccccCCC-----------CCcceeeEE-EcCCCc----EEEEecCCccEEEEEccCCCc
Confidence 7 7889999999999988776666531 234566776 888844 9999999999999998651
Q ss_pred ---CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 242 ---GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 242 ---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
-+|+..++.|++-+..+.++|++++||++|.|.+++||+.++.
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 2467789999999999999999999999999999999999987
No 26
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.1e-31 Score=217.66 Aligned_cols=214 Identities=20% Similarity=0.331 Sum_probs=159.8
Q ss_pred EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCC-CeEEEEe
Q 022870 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQG 83 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~ 83 (291)
.+.||.+.|++++|+| ++.+|++|+.|++|++||+.++ +.+..+.+|... |.+++|+| ++ ++|++++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~--V~~l~f~P--~~~~iLaSgs 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKK--VGIVSFHP--SAMNVLASAG 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCc--EEEEEeCc--CCCCEEEEEe
Confidence 4789999999999999 8889999999999999999764 346677888755 99999999 64 6899999
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
.|++|++||+++++... .+..+..... + ++|+|++..+
T Consensus 146 ~DgtVrIWDl~tg~~~~----~l~~h~~~V~--s------------------------------------la~spdG~lL 183 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVE----VIKCHSDQIT--S------------------------------------LEWNLDGSLL 183 (493)
T ss_pred CCCEEEEEECCCCeEEE----EEcCCCCceE--E------------------------------------EEEECCCCEE
Confidence 99999999999775322 2221111000 0 5689998654
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEccC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRN 240 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~ 240 (291)
+ +++.|+.|++||+++++.+..+. +|.... ...+. |.|+. ..++.+| +.|+.|++||+++
T Consensus 184 a--tgs~Dg~IrIwD~rsg~~v~tl~--------~H~~~~---~~~~~-w~~~~---~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 184 C--TTSKDKKLNIIDPRDGTIVSSVE--------AHASAK---SQRCL-WAKRK---DLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred E--EecCCCEEEEEECCCCcEEEEEe--------cCCCCc---ceEEE-EcCCC---CeEEEEecCCCCCCeEEEEeCCC
Confidence 4 67779999999999999888877 564322 22333 88763 2144444 3589999999998
Q ss_pred CCCceeeccccc-cceeEEEeecCCCeeEEec-CCCeEEEEEcCCCceeee
Q 022870 241 PGIPLTAMKVHL-EPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 241 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~~~~~ 289 (291)
...++.....+. ..+....|++++++|++++ .|+.|++||+.+++++..
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 556665554443 3455567899999998887 599999999999887654
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=209.40 Aligned_cols=244 Identities=17% Similarity=0.272 Sum_probs=189.0
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
..+++|..+|+++.|++++.++++|+.+|.|++|+.+ .+.++.+..|.. +.|.+++|+| ....|++++.||+|+||
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~-eaIRdlafSp--nDskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHA-EAIRDLAFSP--NDSKFLTCSDDGTIKIW 207 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhh-hhhheeccCC--CCceeEEecCCCeEEEE
Confidence 3467899999999999999999999999999999975 455556666653 4599999999 77999999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEe
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA 167 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 167 (291)
|....+... ++..+.-....+.+.+...-.. .......+..|+.+....+.. +.+|.. +.|+|+++.++ +
T Consensus 208 df~~~kee~--vL~GHgwdVksvdWHP~kgLia-sgskDnlVKlWDprSg~cl~t-lh~HKntVl~~~f~~n~N~Ll--t 281 (464)
T KOG0284|consen 208 DFRMPKEER--VLRGHGWDVKSVDWHPTKGLIA-SGSKDNLVKLWDPRSGSCLAT-LHGHKNTVLAVKFNPNGNWLL--T 281 (464)
T ss_pred eccCCchhh--eeccCCCCcceeccCCccceeE-EccCCceeEeecCCCcchhhh-hhhccceEEEEEEcCCCCeeE--E
Confidence 998776533 3444444444444444332222 223333667777777665543 334444 88999996555 7
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
++.|..+++||+++.+.++.++ +|.. .+.++. |+|-.. .+|.+|+.||.|..|.+.. .+++..
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r--------~Hkk----dv~~~~-WhP~~~---~lftsgg~Dgsvvh~~v~~-~~p~~~ 344 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYR--------GHKK----DVTSLT-WHPLNE---SLFTSGGSDGSVVHWVVGL-EEPLGE 344 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhh--------cchh----hheeec-cccccc---cceeeccCCCceEEEeccc-cccccC
Confidence 8899999999999888888888 7744 566666 999743 2899999999999999985 566555
Q ss_pred c-cccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 248 M-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 248 ~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
+ .+|...|++++|+|=|..|++|+.|.++++|.-.
T Consensus 345 i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 345 IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4 4899999999999999999999999999999764
No 28
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.1e-30 Score=214.58 Aligned_cols=217 Identities=19% Similarity=0.227 Sum_probs=158.1
Q ss_pred CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCe--------EEEEEeeecCCcceEEEEEeecCCCCe-
Q 022870 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNK- 78 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~- 78 (291)
.++..+.+|.++|.+++|+|+ +.+|++|+.||+|+|||+.++. .+..+.+|... |.+++|+| ++..
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~--V~sVaf~P--~g~~i 140 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK--ISIIDWNP--MNYYI 140 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc--EEEEEECC--CCCeE
Confidence 457789999999999999996 7899999999999999997542 33456777754 99999999 7665
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (291)
Q Consensus 79 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (291)
|++++.|++|++||+++++... .+........ ++|+|
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~----~i~~~~~V~S---------------------------------------lswsp 177 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAF----QINMPKKLSS---------------------------------------LKWNI 177 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEE----EEecCCcEEE---------------------------------------EEECC
Confidence 5789999999999999875322 1111111111 56999
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC----CcEE
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSIL 234 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d----g~i~ 234 (291)
+|..+ + +++.|+.|++||+++++.+..+. +|.......+..+..|+++ +. +|++++.| +.|+
T Consensus 178 dG~lL-a-t~s~D~~IrIwD~Rsg~~i~tl~--------gH~g~~~s~~v~~~~fs~d---~~-~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 178 KGNLL-S-GTCVGKHMHIIDPRKQEIASSFH--------IHDGGKNTKNIWIDGLGGD---DN-YILSTGFSKNNMREMK 243 (568)
T ss_pred CCCEE-E-EEecCCEEEEEECCCCcEEEEEe--------cccCCceeEEEEeeeEcCC---CC-EEEEEEcCCCCccEEE
Confidence 99754 3 45568999999999999988887 7765433333322236676 33 77776655 3799
Q ss_pred EEEccCCCCceeecccc--ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 235 VWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
|||+++...++..+..+ .+.+......+++.++++|+.|+.|++|++..+.+
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE
Confidence 99999756777665432 23333333355688899999999999999987653
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=191.46 Aligned_cols=245 Identities=16% Similarity=0.220 Sum_probs=189.7
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVK 89 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~ 89 (291)
..++++|+++|..+.|.+|++.+++++.|.+|+.||.++|++.+.++.|... |.++.-+. -|. ++.+++.|++++
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~--vNs~~p~r--rg~~lv~SgsdD~t~k 158 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF--VNSLDPSR--RGPQLVCSGSDDGTLK 158 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccce--eeecCccc--cCCeEEEecCCCceEE
Confidence 5678899999999999999999999999999999999999999999999855 88888544 444 566899999999
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeecccCc-cceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (291)
+||+++....+ +... .....++.+.... ............+|+++.... ...+.+|.+ +..+|+|..++
T Consensus 159 l~D~R~k~~~~----t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~-~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 159 LWDIRKKEAIK----TFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG-LYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred EEeecccchhh----cccc-ceeEEEEEecccccceeeccccCceeeeccccCcc-eEEeecccCceeeEEeccCCCccc
Confidence 99999876544 2211 2222222222111 122333344557787765543 334566766 88999999887
Q ss_pred EEecCCcCeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 165 AVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
+.+.|.++++||++-. +++..+. +|.....-...... |+|++. .+.+|+.|..+++||...
T Consensus 233 --snsMd~tvrvwd~rp~~p~~R~v~if~--------g~~hnfeknlL~cs-wsp~~~----~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 233 --SNSMDNTVRVWDVRPFAPSQRCVKIFQ--------GHIHNFEKNLLKCS-WSPNGT----KITAGSADRFVYVWDTTS 297 (338)
T ss_pred --cccccceEEEEEecccCCCCceEEEee--------cchhhhhhhcceee-ccCCCC----ccccccccceEEEeeccc
Confidence 7888999999999853 3466666 66555555556665 999843 899999999999999987
Q ss_pred CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
...+..+.||.+.|+.++|+|...+|.+++.|.+|++=++
T Consensus 298 -r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 298 -RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred -ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 8899999999999999999999999999999999987543
No 30
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-33 Score=205.39 Aligned_cols=242 Identities=22% Similarity=0.357 Sum_probs=193.7
Q ss_pred eEEecCCccceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 11 VAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
+..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+.++..+++.|.+. |..|++.. ..+++++.|.+|+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~----~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQ----TSFFTVGDDKTVK 132 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc--eeeEEecc----cceEEecCCccee
Confidence 66789999999999999965 78999999999999999999999999999866 99999976 6789999999999
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEE
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMA 165 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 165 (291)
.|.++.. +..++...... ..+.. .........|....+|+......+.....+... +.|+|....+++
T Consensus 133 ~wk~~~~-----p~~tilg~s~~---~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 133 QWKIDGP-----PLHTILGKSVY---LGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeccCC-----cceeeeccccc---cccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 9998763 11122211111 11111 112334455667788888777666665555554 889999999888
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
++++ |+.|.|||+++..++..+.. ......++ |+|. +. .+++|++|..++.||++....++
T Consensus 205 s~~s-DrsIvLyD~R~~~Pl~KVi~-------------~mRTN~Is-wnPe---af-nF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 205 SCAS-DRSIVLYDLRQASPLKKVIL-------------TMRTNTIC-WNPE---AF-NFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred eecc-CCceEEEecccCCccceeee-------------ecccccee-cCcc---cc-ceeeccccccceehhhhhhcccc
Confidence 6666 89999999999998877652 22233444 9995 44 79999999999999999989999
Q ss_pred eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
...++|...|.++.|+|.|+-+++||.|.+|+||.++.+.
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 9999999999999999999999999999999999998765
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.9e-31 Score=216.63 Aligned_cols=219 Identities=25% Similarity=0.357 Sum_probs=178.3
Q ss_pred CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
+.+...+++++||...|++++|+|+++++++|+.|++|+|||++++++...+.+|... |.+++|++ ++++|++++.
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~--d~~~l~s~s~ 308 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSP--DGNLLVSASY 308 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECC--CCCEEEEcCC
Confidence 3455788999999999999999999999999999999999999999999999999955 99999999 9999999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
|+.|++||+.++... ....+........ ... +.|+|++.+++
T Consensus 309 d~~i~vwd~~~~~~~--~~~~~~~~~~~~~-~~~-----------------------------------~~fsp~~~~ll 350 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKL--CLKLLSGAENSAP-VTS-----------------------------------VQFSPNGKYLL 350 (456)
T ss_pred CccEEEEECCCCcee--eeecccCCCCCCc-eeE-----------------------------------EEECCCCcEEE
Confidence 999999999998731 0001111110000 000 55999998877
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
++..|+.+++||++.+..+..+. +|.... ....+.. +.+. +. ++++|+.|+.|++||+.+ +..
T Consensus 351 --~~~~d~~~~~w~l~~~~~~~~~~--------~~~~~~-~~~~~~~-~~~~---~~-~i~sg~~d~~v~~~~~~s-~~~ 413 (456)
T KOG0266|consen 351 --SASLDRTLKLWDLRSGKSVGTYT--------GHSNLV-RCIFSPT-LSTG---GK-LIYSGSEDGSVYVWDSSS-GGI 413 (456)
T ss_pred --EecCCCeEEEEEccCCcceeeec--------ccCCcc-eeEeccc-ccCC---CC-eEEEEeCCceEEEEeCCc-cch
Confidence 56778999999999999999888 665532 1222222 3433 55 999999999999999998 889
Q ss_pred eeecccc-ccceeEEEeecCCCeeEEec--CCCeEEEEEcC
Q 022870 245 LTAMKVH-LEPVLCLSIDESCNGGISGG--ADQKIVLYNLD 282 (291)
Q Consensus 245 ~~~~~~h-~~~v~~~~~~~~~~~l~s~s--~dg~i~vw~~~ 282 (291)
+..+.+| ...+..+.+++..+++++++ .|+.+++|..+
T Consensus 414 ~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 414 LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999 89999999999999999998 79999999865
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.9e-30 Score=201.07 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=190.5
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
++++++|.++|++++|+|++++|++++.||.+++|++.+++....+..|... +..+.|+| +++++++++.||.|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP--VRDVAASA--DGTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc--eeEEEECC--CCCEEEEEcCCCeEEE
Confidence 4568899999999999999999999999999999999988888888888754 89999999 8789999999999999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 165 (291)
||+.+++... .+..+........+... ....... ..+....|++...+.... +..|.. ++|+|++.. ++
T Consensus 78 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~-l~ 151 (289)
T cd00200 78 WDLETGECVR--TLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTT-LRGHTDWVNSVAFSPDGTF-VA 151 (289)
T ss_pred EEcCcccceE--EEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEE-eccCCCcEEEEEEcCcCCE-EE
Confidence 9999764432 11222222333333322 2222222 256677777764443222 224443 889998654 33
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
+++.|+.+++||+++++....+. .| ...+.++. |+|+ ++ .+++++.+|.|++||+++ ++.+
T Consensus 152 -~~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~l~~~~~~~~i~i~d~~~-~~~~ 212 (289)
T cd00200 152 -SSSQDGTIKLWDLRTGKCVATLT--------GH----TGEVNSVA-FSPD---GE-KLLSSSSDGTIKLWDLST-GKCL 212 (289)
T ss_pred -EEcCCCcEEEEEccccccceeEe--------cC----ccccceEE-ECCC---cC-EEEEecCCCcEEEEECCC-Ccee
Confidence 55568999999999888877776 34 33566776 9998 43 788888899999999998 7888
Q ss_pred eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
..+..|...+.+++|++++.++++++.||.|++|++.+++....+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 888889999999999999888888888999999999987766543
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-30 Score=199.12 Aligned_cols=218 Identities=16% Similarity=0.263 Sum_probs=174.5
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE---------------------------------
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--------------------------------- 53 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------------------------------- 53 (291)
++..+.+|.-|+++|.++.|+.+|++|++++.|+++.+||..++...
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC 344 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence 45677888999999999999999999999999999999998665432
Q ss_pred --------EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccce
Q 022870 54 --------SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125 (291)
Q Consensus 54 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (291)
.++.+|.++ |.++.|+| .+.+|+++|.|++++||+........ -+..+........+++...
T Consensus 345 kv~~~~P~~t~~GH~g~--V~alk~n~--tg~LLaS~SdD~TlkiWs~~~~~~~~--~l~~Hskei~t~~wsp~g~---- 414 (524)
T KOG0273|consen 345 KVGEDRPVKTFIGHHGE--VNALKWNP--TGSLLASCSDDGTLKIWSMGQSNSVH--DLQAHSKEIYTIKWSPTGP---- 414 (524)
T ss_pred EecCCCcceeeecccCc--eEEEEECC--CCceEEEecCCCeeEeeecCCCcchh--hhhhhccceeeEeecCCCC----
Confidence 233466644 99999999 89999999999999999987765543 2222222333333332221
Q ss_pred eccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcce
Q 022870 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG 205 (291)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (291)
+..+|.....+++ ++.|++|++||+..+.++..|. .| ..
T Consensus 415 ----------------------------v~~n~~~~~~l~s-as~dstV~lwdv~~gv~i~~f~--------kH----~~ 453 (524)
T KOG0273|consen 415 ----------------------------VTSNPNMNLMLAS-ASFDSTVKLWDVESGVPIHTLM--------KH----QE 453 (524)
T ss_pred ----------------------------ccCCCcCCceEEE-eecCCeEEEEEccCCceeEeec--------cC----CC
Confidence 3355555555664 4559999999999999999997 56 55
Q ss_pred eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
++++++ |+|+ |+ ++++|+.||.|.+|+.++ ++.++++++ .+.|..++|+.+|..|..+-.|+.+.+-|++
T Consensus 454 pVysva-fS~~---g~-ylAsGs~dg~V~iws~~~-~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 454 PVYSVA-FSPN---GR-YLASGSLDGCVHIWSTKT-GKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ceEEEE-ecCC---Cc-EEEecCCCCeeEeccccc-hheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 788887 9998 55 999999999999999999 899999987 5679999999999999999999999999986
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=206.04 Aligned_cols=205 Identities=17% Similarity=0.302 Sum_probs=168.3
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
-+.+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|..+ |.++.|++ ++.++++|+.+|.|++|+....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~--Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP--VRTMKWSH--NGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc--ceeEEEcc--CCCEEEEcCCCceEEecccchh
Confidence 3568999999999999999999999999997655444456678855 99999999 9999999999999999998865
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 176 (291)
.... ....+... ..+ ++|+|.+..++ +++.||+|+|
T Consensus 171 nVk~--~~ahh~ea-IRd---------------------------------------lafSpnDskF~--t~SdDg~iki 206 (464)
T KOG0284|consen 171 NVKI--IQAHHAEA-IRD---------------------------------------LAFSPNDSKFL--TCSDDGTIKI 206 (464)
T ss_pred hhHH--hhHhhhhh-hhe---------------------------------------eccCCCCceeE--EecCCCeEEE
Confidence 4321 11111111 111 77999776555 6778999999
Q ss_pred EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee
Q 022870 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (291)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 256 (291)
||....+....+. +|.. .+.++. |+|... .|++|+.|..|++||.++ +.++.++.+|+..|.
T Consensus 207 Wdf~~~kee~vL~--------GHgw----dVksvd-WHP~kg----LiasgskDnlVKlWDprS-g~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 207 WDFRMPKEERVLR--------GHGW----DVKSVD-WHPTKG----LIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVL 268 (464)
T ss_pred EeccCCchhheec--------cCCC----Ccceec-cCCccc----eeEEccCCceeEeecCCC-cchhhhhhhccceEE
Confidence 9999988877787 7744 455666 999854 899999999999999999 999999999999999
Q ss_pred EEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 257 CLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
.+.|++++++|+|+|.|..++++|+++-+-+
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999954433
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-31 Score=216.92 Aligned_cols=225 Identities=14% Similarity=0.241 Sum_probs=178.5
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.++..|.+|.++|+.++|+|++.++++|+.|-.|++|+..+.+++.++.+|-.- |..+.|++ .-..++++|.|.+|
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--VRt~~FHh--eyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--VRTVFFHH--EYPWILSASDDQTI 117 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce--eEEeeccC--CCceEEEccCCCeE
Confidence 456778999999999999999999999999999999999999999999999955 99999999 88899999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
+|||..+.+++. +.+.+.+...+ ..|+|....++ ++
T Consensus 118 rIWNwqsr~~ia--vltGHnHYVMc----------------------------------------AqFhptEDlIV--Sa 153 (1202)
T KOG0292|consen 118 RIWNWQSRKCIA--VLTGHNHYVMC----------------------------------------AQFHPTEDLIV--SA 153 (1202)
T ss_pred EEEeccCCceEE--EEecCceEEEe----------------------------------------eccCCccceEE--Ee
Confidence 999999998765 55555554443 34888765433 88
Q ss_pred CCcCeEEEEeCCCcceeeEecc----c-----------------ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQ----N-----------------SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~----~-----------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g 227 (291)
|.|.+||+||+..-+....-+. . ......||.. -+.-. +|+|.-+ .|++|
T Consensus 154 SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR----GVNwa-AfhpTlp----liVSG 224 (1202)
T KOG0292|consen 154 SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR----GVNWA-AFHPTLP----LIVSG 224 (1202)
T ss_pred cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc----ccceE-EecCCcc----eEEec
Confidence 9999999999863211100000 0 0001114422 23334 4999755 99999
Q ss_pred cCCCcEEEEEccC-CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 228 YEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 228 ~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
++|..|++|.+.. ..-.+.+.++|...|.++-|+|....++|.|+|++|+|||++..+.++++
T Consensus 225 ~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 9999999999874 12356678999999999999998889999999999999999999988875
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=6.5e-30 Score=182.54 Aligned_cols=210 Identities=21% Similarity=0.247 Sum_probs=165.5
Q ss_pred CceEEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCC---eEEEEEe-eecCCcceEEEEEeecCCCCeEEEEe
Q 022870 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH---RTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
..++++++|++.|..++|+|- |..||||+.|..|++|+...+ .+...+. +|+ ..|.+++|+| .|++|++||
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~aS 80 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASAS 80 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEee
Confidence 357889999999999999996 889999999999999998743 3444442 466 4599999999 999999999
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
.|.++.||.-..++... +..+..+...... ++|+++|++|
T Consensus 81 FD~t~~Iw~k~~~efec--v~~lEGHEnEVK~--------------------------------------Vaws~sG~~L 120 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFEC--VATLEGHENEVKC--------------------------------------VAWSASGNYL 120 (312)
T ss_pred ccceEEEeecCCCceeE--EeeeeccccceeE--------------------------------------EEEcCCCCEE
Confidence 99999999877665422 2222222111110 6799999755
Q ss_pred EEEecCCcCeEEEEeCCCc---ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 164 MAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
. ++++|+.|-+|.+... ++...++ .|....+.. . |+|... +|++++.|.+|++|.-..
T Consensus 121 A--TCSRDKSVWiWe~deddEfec~aVL~--------~HtqDVK~V----~-WHPt~d----lL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 121 A--TCSRDKSVWIWEIDEDDEFECIAVLQ--------EHTQDVKHV----I-WHPTED----LLFSCSYDNTIKVYRDED 181 (312)
T ss_pred E--EeeCCCeEEEEEecCCCcEEEEeeec--------cccccccEE----E-EcCCcc----eeEEeccCCeEEEEeecC
Confidence 4 7788999999998744 3556666 676654443 3 999743 999999999999998763
Q ss_pred C--CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 241 P--GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 241 ~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
. -.+++++.+|...|++++|++.|..|++++.|++++||..
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 1 3578999999999999999999999999999999999984
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.9e-31 Score=187.84 Aligned_cols=216 Identities=20% Similarity=0.300 Sum_probs=174.8
Q ss_pred CCCCCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
.+.|..|++.++.|+.+|.++.|++ ++..+++++-|++||+|+...++.+.++.+|... |...+|+|. .+++++++
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~--Iy~a~~sp~-~~nlfas~ 166 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC--IYQAAFSPH-IPNLFASA 166 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE--EEEEecCCC-CCCeEEEc
Confidence 4567789999999999999999999 6778889999999999999999999999999855 999999997 56899999
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
|.|+++++||++...... .+..+...... ..|+...++
T Consensus 167 Sgd~~l~lwdvr~~gk~~--~i~ah~~Eil~----------------------------------------cdw~ky~~~ 204 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFM--SIEAHNSEILC----------------------------------------CDWSKYNHN 204 (311)
T ss_pred cCCceEEEEEecCCCcee--EEEeccceeEe----------------------------------------ecccccCCc
Confidence 999999999998764321 22222222222 237777777
Q ss_pred EEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
+++ +|+.|+.|+.||+++.+ ++..+. +|. -.+..++ |+|...+ .|++++.|-+++|||...+
T Consensus 205 vl~-Tg~vd~~vr~wDir~~r~pl~eL~--------gh~----~AVRkvk-~Sph~~~---lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 205 VLA-TGGVDNLVRGWDIRNLRTPLFELN--------GHG----LAVRKVK-FSPHHAS---LLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EEE-ecCCCceEEEEehhhccccceeec--------CCc----eEEEEEe-cCcchhh---HhhhccccceEEecccccc
Confidence 776 67779999999999765 455554 663 3566676 9998432 8999999999999999865
Q ss_pred CCceeeccccccceeEEEeec-CCCeeEEecCCCeEEEEEc
Q 022870 242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~ 281 (291)
...+.+..-|..-|.++.|++ +..++|+++.|+.++||+.
T Consensus 268 ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 777888889999999999954 5668999999999999984
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=1.2e-31 Score=189.58 Aligned_cols=255 Identities=16% Similarity=0.235 Sum_probs=201.5
Q ss_pred CCCCCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (291)
Q Consensus 1 m~~~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (291)
|.++-..+.-+.+|.||++.|+....+.+....|+++.|=+-++||.-+|..+++++ |++. |.+++|+. |.++|+
T Consensus 42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhi--vk~~af~~--ds~~ll 116 (334)
T KOG0278|consen 42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHI--VKAVAFSQ--DSNYLL 116 (334)
T ss_pred hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhhe--eeeEEecc--cchhhh
Confidence 344445567789999999999999999999889999999999999999999999886 7777 99999999 999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--ccc
Q 022870 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDV 156 (291)
Q Consensus 81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 156 (291)
+|+.++.+++||++..+.. ...+..+ ......+..... +.........++.|+.+...........+.. +.+
T Consensus 117 tgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv 192 (334)
T KOG0278|consen 117 TGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV 192 (334)
T ss_pred ccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence 9999999999999877642 2233333 233333333322 2333367778899999888766654444433 899
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
+++|+.+.++- .+.|++||..+...++.++.+ ..+.+.. .+|+.. ++++|++|..++.|
T Consensus 193 s~dG~ilTia~---gssV~Fwdaksf~~lKs~k~P-------------~nV~SAS-L~P~k~----~fVaGged~~~~kf 251 (334)
T KOG0278|consen 193 SQDGRILTIAY---GSSVKFWDAKSFGLLKSYKMP-------------CNVESAS-LHPKKE----FFVAGGEDFKVYKF 251 (334)
T ss_pred ccCCCEEEEec---CceeEEeccccccceeeccCc-------------ccccccc-ccCCCc----eEEecCcceEEEEE
Confidence 99998665432 368999999999988887742 2344444 888742 89999999999999
Q ss_pred EccCCCCceeec-cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 237 DIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 237 d~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
|..+ +..+..+ ++|.++|.++.|+|+|...++||.||+|++|.+..++-
T Consensus 252 Dy~T-geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 252 DYNT-GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eccC-CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999 7777775 89999999999999999999999999999999876653
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.6e-30 Score=181.22 Aligned_cols=252 Identities=15% Similarity=0.191 Sum_probs=198.2
Q ss_pred CCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
+|..+.+++++.||..+|..++.+.|...+++|+.|..|.+||+++|+..+.+.+|..+ |..++|+. +...+++|+
T Consensus 45 Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq--VNtV~fNe--esSVv~Sgs 120 (307)
T KOG0316|consen 45 NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ--VNTVRFNE--ESSVVASGS 120 (307)
T ss_pred cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce--eeEEEecC--cceEEEecc
Confidence 57778899999999999999999999999999999999999999999999999999966 99999999 889999999
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCc
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPK 162 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 162 (291)
.|.++++||-+.... +|+..+.........+.+. .....+....+....++++.++.....+...-. ++|+++++.
T Consensus 121 fD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc 197 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNC 197 (307)
T ss_pred ccceeEEEEcccCCC--CccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCE
Confidence 999999999998765 4455554433333322222 223344555677788888877655443322222 999999988
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
.+ .++.|+++++.|-.+++.+..++ +|... ..-...+ ++... . .+++|++||.|++||+.+ .
T Consensus 198 ~L--a~~l~stlrLlDk~tGklL~sYk--------Ghkn~--eykldc~-l~qsd---t-hV~sgSEDG~Vy~wdLvd-~ 259 (307)
T KOG0316|consen 198 SL--ASSLDSTLRLLDKETGKLLKSYK--------GHKNM--EYKLDCC-LNQSD---T-HVFSGSEDGKVYFWDLVD-E 259 (307)
T ss_pred EE--EeeccceeeecccchhHHHHHhc--------ccccc--eeeeeee-ecccc---e-eEEeccCCceEEEEEecc-c
Confidence 77 56779999999999999999998 88653 2333333 66542 2 899999999999999998 7
Q ss_pred Cceeeccccccc-eeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 243 IPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 243 ~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
..+..+..|... |.+++++|....|+++.. +.+..|--
T Consensus 260 ~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 260 TQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred eeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 888888888777 899999998888888764 44666643
No 40
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.2e-30 Score=188.64 Aligned_cols=218 Identities=17% Similarity=0.260 Sum_probs=172.4
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------------C------eEEEEEeeecCCcceEEEEEee
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAAHGIVSVATGP 72 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~~~v~~~~~~~ 72 (291)
...+..|++++++.+|++||.++|||+.|..|+|.|++. + -.++++-.|.. +|.++.|+|
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d--evn~l~FHP 182 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD--EVNDLDFHP 182 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC--cccceeecc
Confidence 456778999999999999999999999999999999872 0 24566666774 499999999
Q ss_pred cCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (291)
Q Consensus 73 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
....|++|+.|++|+++|+......+. ...+.......+
T Consensus 183 --re~ILiS~srD~tvKlFDfsK~saKrA-~K~~qd~~~vrs-------------------------------------- 221 (430)
T KOG0640|consen 183 --RETILISGSRDNTVKLFDFSKTSAKRA-FKVFQDTEPVRS-------------------------------------- 221 (430)
T ss_pred --hhheEEeccCCCeEEEEecccHHHHHH-HHHhhccceeee--------------------------------------
Confidence 778999999999999999986543220 001111111111
Q ss_pred CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870 153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (291)
Q Consensus 153 ~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (291)
+.|+|.|+.++ .|..-..+++||+++.++...-.. ...+.+.+.++. |++. |. +.++|+.||.
T Consensus 222 -iSfHPsGefll--vgTdHp~~rlYdv~T~QcfvsanP---------d~qht~ai~~V~-Ys~t---~~-lYvTaSkDG~ 284 (430)
T KOG0640|consen 222 -ISFHPSGEFLL--VGTDHPTLRLYDVNTYQCFVSANP---------DDQHTGAITQVR-YSST---GS-LYVTASKDGA 284 (430)
T ss_pred -EeecCCCceEE--EecCCCceeEEeccceeEeeecCc---------ccccccceeEEE-ecCC---cc-EEEEeccCCc
Confidence 56999999877 466678999999999888665441 122466788887 9998 44 8999999999
Q ss_pred EEEEEccCCCCceeecc-ccc-cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 233 ILVWDIRNPGIPLTAMK-VHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 233 i~vwd~~~~~~~~~~~~-~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
|++||--+ .+++.++. +|. ..|.+..|..+++++.+.+.|..+++|++.+++.+..
T Consensus 285 IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 285 IKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999887 78888775 564 4799999999999999999999999999999998764
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=184.00 Aligned_cols=251 Identities=17% Similarity=0.232 Sum_probs=191.8
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
+.+++|.+.|.+++|+-+|..|++|+.|+++++|+++..+....+ .+|. +.|-.++|.|. ..++|++++.|.+|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~--~svdql~w~~~-~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT--DSVDQLCWDPK-HPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC--cchhhheeCCC-CCcceEEecCCceEE
Confidence 567899999999999999999999999999999999877655544 4555 44999999986 458999999999999
Q ss_pred EEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCCCC-cccCCCCCcEEEE
Q 022870 90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK-DDVPAEGPKYMAV 166 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 166 (291)
+||++.+++.. .+... ......+++..... .+......+..++.+..+..... +..... ++|+-++..++++
T Consensus 91 ~wd~r~~k~~~----~i~~~~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 91 IWDIRSGKCTA----RIETKGENINITWSPDGEYI-AVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred EEEeccCcEEE----EeeccCcceEEEEcCCCCEE-EEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe
Confidence 99999987644 22221 22222233332221 12223334445555555433332 222222 8888777666665
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+| .|.|.|......+++..++ +|+ ..|+++. |+|+ |+ ++|+|+.|-.+.+||+.. --+++
T Consensus 166 ~G--lG~v~ILsypsLkpv~si~--------AH~----snCicI~-f~p~---Gr-yfA~GsADAlvSLWD~~E-LiC~R 225 (313)
T KOG1407|consen 166 NG--LGCVEILSYPSLKPVQSIK--------AHP----SNCICIE-FDPD---GR-YFATGSADALVSLWDVDE-LICER 225 (313)
T ss_pred cC--CceEEEEeccccccccccc--------cCC----cceEEEE-ECCC---Cc-eEeeccccceeeccChhH-hhhhe
Confidence 55 4899999999999999998 674 5788898 9998 66 999999999999999997 78888
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.+.-+.-+|..+.|+.+|++||++|+|..|-|=++++|..+..|
T Consensus 226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 99889999999999999999999999999999999988877654
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=9.4e-30 Score=181.48 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=177.5
Q ss_pred EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
.|+||+.+++.+.|+.+|.+|++++.|.+..||-..+|+.+.++.+|.+. |+|+.... +...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~--~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDW--DSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecC--CcceeeeccccceeEEEE
Confidence 47899999999999999999999999999999998899999999999977 99999998 889999999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---C
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---E 169 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~ 169 (291)
+++++++. .++....... +.|+++|..+++++- +
T Consensus 81 v~tGk~la----~~k~~~~Vk~---------------------------------------~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 81 VETGKQLA----TWKTNSPVKR---------------------------------------VDFSFGGNLILASTDKQMG 117 (327)
T ss_pred cCCCcEEE----EeecCCeeEE---------------------------------------EeeccCCcEEEEEehhhcC
Confidence 99998744 3333322211 448888877666431 1
Q ss_pred CcCeEEEEeCC-------CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 170 QLSEVEIWDLN-------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 170 ~d~~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
..+.|.++|++ ..++...+. .+ ...++... |.|. ++ +|++|.+||.|..||++++.
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~--------t~----~skit~a~-Wg~l---~~-~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIP--------TP----DSKITSAL-WGPL---GE-TIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEec--------CC----ccceeeee-eccc---CC-EEEEecCCCcEEEEEcccCc
Confidence 24779999998 444555555 22 23445554 9998 44 99999999999999999966
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+.+.+-+.|...|+.|+++++..+++++|.|.+-++||+++-+++++.
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 777888899999999999999999999999999999999998887653
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=179.04 Aligned_cols=237 Identities=18% Similarity=0.218 Sum_probs=175.2
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
+|+..|++++|+|.|++|++|+.|.++.||.-..+ +++..+++|..+ |.|++|++ +|++|++++.|++|-||.+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~--sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE--VKCVAWSA--SGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc--eeEEEEcC--CCCEEEEeeCCCeEEEEEe
Confidence 69999999999999999999999999999986543 788999999966 99999999 9999999999999999998
Q ss_pred CCCCC-CCCCccccccceEEEEEeecccCccceeccCCCCceeee-c-ccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870 94 ENGGL-SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-R-EVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (291)
Q Consensus 94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (291)
..... ....+++.+........+.+...-.....++. .+..|. . .........+.+|.. ++|++.|.++.
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~-- 211 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV-- 211 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE--
Confidence 74432 11123444455555555555443333333333 334443 3 333455667777775 89999998766
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CCce
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIPL 245 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~~~ 245 (291)
+++.|++++||-..+. +. ......++.+. |. + | .|++++.|+.|++|..... ..+.
T Consensus 212 s~sdD~tv~Iw~~~~~-----~~-----------~~~sr~~Y~v~-W~-~---~--~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTD-----LS-----------GMHSRALYDVP-WD-N---G--VIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred EecCCcceEeeeeccC-----cc-----------hhcccceEeee-ec-c---c--ceEeccCCCEEEEEEecCCCCCch
Confidence 7888999999986621 11 11234566665 87 3 3 7999999999999976541 1222
Q ss_pred -----eeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcC
Q 022870 246 -----TAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 246 -----~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~ 282 (291)
..-..|...|++++|+|. .++|++|+.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 234578889999999994 6789999999999999875
No 44
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=203.60 Aligned_cols=211 Identities=24% Similarity=0.316 Sum_probs=171.6
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCC-CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.+++.+.--..+|..++|+..|.+||.|+.. |.+.||+..+..-+...++|... +.+++++| ||.++++|+.||.
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~--i~~l~YSp--Dgq~iaTG~eDgK 373 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR--ITSLAYSP--DGQLIATGAEDGK 373 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc--eeeEEECC--CCcEEEeccCCCc
Confidence 4567777667889999999999999998765 89999999998888888899866 99999999 9999999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
|++||...+-+.. ++..+...... +.|+..|+.++ +
T Consensus 374 VKvWn~~SgfC~v----TFteHts~Vt~--------------------------------------v~f~~~g~~ll--s 409 (893)
T KOG0291|consen 374 VKVWNTQSGFCFV----TFTEHTSGVTA--------------------------------------VQFTARGNVLL--S 409 (893)
T ss_pred EEEEeccCceEEE----EeccCCCceEE--------------------------------------EEEEecCCEEE--E
Confidence 9999999876633 33322221111 44777776555 7
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC-cEEEEEccCCCCcee
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLT 246 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg-~i~vwd~~~~~~~~~ 246 (291)
.+.||+|+.||+...+..+++..+ ......+++ ..|. |. .+++|+.|. .|.||++++ ++.+.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P-----------~p~Qfscva-vD~s---Ge-lV~AG~~d~F~IfvWS~qT-GqllD 472 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSP-----------EPIQFSCVA-VDPS---GE-LVCAGAQDSFEIFVWSVQT-GQLLD 472 (893)
T ss_pred eecCCeEEeeeecccceeeeecCC-----------CceeeeEEE-EcCC---CC-EEEeeccceEEEEEEEeec-Ceeee
Confidence 888999999999999999888731 222333443 6665 55 777887775 699999999 99999
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
.+.||+++|.+++|+|.+..|+|+|.|.+||+||+=..
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 99999999999999999999999999999999997543
No 45
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=205.71 Aligned_cols=219 Identities=17% Similarity=0.266 Sum_probs=171.6
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (291)
-.+|++.|.||.+.|..|.|+.++ +|++++.|.+||||++...+|+..|. |. +.|+|++|+|. |.++|++|+.||
T Consensus 358 ~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--dfVTcVaFnPv-DDryFiSGSLD~ 432 (712)
T KOG0283|consen 358 SEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HN--DFVTCVAFNPV-DDRYFISGSLDG 432 (712)
T ss_pred cccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cC--CeeEEEEeccc-CCCcEeeccccc
Confidence 347899999999999999999887 99999999999999999999999886 66 44999999998 559999999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
.|+||++...+... -..++ ..... ++|.|+|+..+
T Consensus 433 KvRiWsI~d~~Vv~--W~Dl~--~lITA---------------------------------------vcy~PdGk~av-- 467 (712)
T KOG0283|consen 433 KVRLWSISDKKVVD--WNDLR--DLITA---------------------------------------VCYSPDGKGAV-- 467 (712)
T ss_pred ceEEeecCcCeeEe--ehhhh--hhhee---------------------------------------EEeccCCceEE--
Confidence 99999998776432 00111 11111 66999998766
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
.|+.+|.+++|+++..+....+.... ..+. ......++.++ |.|..++ .+++.+.|..|||||.++ ..++.
T Consensus 468 IGt~~G~C~fY~t~~lk~~~~~~I~~---~~~K-k~~~~rITG~Q-~~p~~~~---~vLVTSnDSrIRI~d~~~-~~lv~ 538 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGLKLVSDFHIRL---HNKK-KKQGKRITGLQ-FFPGDPD---EVLVTSNDSRIRIYDGRD-KDLVH 538 (712)
T ss_pred EEEeccEEEEEEccCCeEEEeeeEee---ccCc-cccCceeeeeE-ecCCCCC---eEEEecCCCceEEEeccc-hhhhh
Confidence 68889999999999887766554210 0011 11223688998 8887543 588888999999999998 88888
Q ss_pred ecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 247 AMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 247 ~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
.|+|+.. .=....|+.+|++|+++++|..|++|++...
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 9987643 2345688889999999999999999998543
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.8e-30 Score=188.94 Aligned_cols=215 Identities=21% Similarity=0.362 Sum_probs=177.6
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (291)
.+++..++.||...|..+++|+...|+++++.|+.|+.||++..+.++.+.+|-+. |.|++.+| .-+.|++|+.|.
T Consensus 182 tg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~--V~~L~lhP--Tldvl~t~grDs 257 (460)
T KOG0285|consen 182 TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG--VYCLDLHP--TLDVLVTGGRDS 257 (460)
T ss_pred cCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce--eEEEeccc--cceeEEecCCcc
Confidence 45677899999999999999999999999999999999999999999999999855 99999999 668999999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
++++||+++...+. .+..+..+... +.+.|.++.++
T Consensus 258 t~RvWDiRtr~~V~--~l~GH~~~V~~----------------------------------------V~~~~~dpqvi-- 293 (460)
T KOG0285|consen 258 TIRVWDIRTRASVH--VLSGHTNPVAS----------------------------------------VMCQPTDPQVI-- 293 (460)
T ss_pred eEEEeeecccceEE--EecCCCCccee----------------------------------------EEeecCCCceE--
Confidence 99999999875433 22222222221 22555566666
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+|+.|++|++||++.++...++. .| +..+.+++ .+|... .+++++.| .|+-|++.. +..++
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt--------~h----kksvral~-lhP~e~----~fASas~d-nik~w~~p~-g~f~~ 354 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLT--------HH----KKSVRALC-LHPKEN----LFASASPD-NIKQWKLPE-GEFLQ 354 (460)
T ss_pred EecCCceEEEeeeccCceeEeee--------cc----cceeeEEe-cCCchh----hhhccCCc-cceeccCCc-cchhh
Confidence 89999999999999999888887 45 44566665 898743 67777776 599999998 88888
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
.+.+|.+.|++++...|+ ++++|+++|.+.+||.+++-..+.
T Consensus 355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 899999999999998876 689999999999999998866543
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=178.60 Aligned_cols=207 Identities=17% Similarity=0.278 Sum_probs=163.0
Q ss_pred CccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 17 h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
-.+.+..++|++ ..+.+++++.||+++|||+.. .+++..++.|..+ |.++.|++. ....++++|.|++|++|+..
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E--V~Svdwn~~-~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE--VYSVDWNTV-RRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh--eEEeccccc-cceeEEeeccCCceEeecCC
Confidence 467899999999 456889999999999999653 4678888999866 999999986 44678888999999999998
Q ss_pred CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (291)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (291)
.++.+. +...+.. +... ..|+|...+++++ .+.|+.+
T Consensus 136 r~~Sv~----Tf~gh~~--~Iy~------------------------------------a~~sp~~~nlfas-~Sgd~~l 172 (311)
T KOG0277|consen 136 RPNSVQ----TFNGHNS--CIYQ------------------------------------AAFSPHIPNLFAS-ASGDGTL 172 (311)
T ss_pred CCcceE----eecCCcc--EEEE------------------------------------EecCCCCCCeEEE-ccCCceE
Confidence 776543 3322211 1111 4588988898885 5569999
Q ss_pred EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (291)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~ 254 (291)
++||++..-....++ .|. ..+.++. |+.. ..+.+++|+.|+.|+.||+++...++.++.+|.-.
T Consensus 173 ~lwdvr~~gk~~~i~--------ah~----~Eil~cd-w~ky---~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIE--------AHN----SEILCCD-WSKY---NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred EEEEecCCCceeEEE--------ecc----ceeEeec-cccc---CCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 999998765444466 553 3455665 7765 22399999999999999999989999999999999
Q ss_pred eeEEEeecC-CCeeEEecCCCeEEEEEcCCCc
Q 022870 255 VLCLSIDES-CNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 255 v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
|..+.|+|. ..+|+|++.|-++||||...+.
T Consensus 237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 237 VRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred EEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999885 3478999999999999998543
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.9e-31 Score=193.22 Aligned_cols=197 Identities=17% Similarity=0.339 Sum_probs=157.2
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
..+.|+|+++. ...+++|..|++|+|||.++-.+++.+.+|.+. |.|+.|.. +.+++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~----rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDE----RVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCc--EEeeeccc----eEEEecCCCceEEEEeccCC
Confidence 35679999994 458999999999999999999999999999976 99999976 79999999999999999999
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 176 (291)
+.+. .+..+....... .|+ +.+++ +++.|.++.+
T Consensus 268 e~l~--tlihHceaVLhl----------------------------------------rf~---ng~mv-tcSkDrsiaV 301 (499)
T KOG0281|consen 268 EPLN--TLIHHCEAVLHL----------------------------------------RFS---NGYMV-TCSKDRSIAV 301 (499)
T ss_pred chhh--HHhhhcceeEEE----------------------------------------EEe---CCEEE-EecCCceeEE
Confidence 8654 222222222211 122 22333 7888999999
Q ss_pred EeCCCccee---eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870 177 WDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (291)
Q Consensus 177 wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (291)
||+.+...+ ..+. || ...+..+. |... ++++++.|.+|++|++.+ ...+..+.+|..
T Consensus 302 Wdm~sps~it~rrVLv--------GH----rAaVNvVd-fd~k------yIVsASgDRTikvW~~st-~efvRtl~gHkR 361 (499)
T KOG0281|consen 302 WDMASPTDITLRRVLV--------GH----RAAVNVVD-FDDK------YIVSASGDRTIKVWSTST-CEFVRTLNGHKR 361 (499)
T ss_pred EeccCchHHHHHHHHh--------hh----hhheeeec-cccc------eEEEecCCceEEEEeccc-eeeehhhhcccc
Confidence 999876532 2233 66 44555565 7643 999999999999999999 999999999999
Q ss_pred ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
.|.++.+.. +++++||.|.+|++||++.|++++.
T Consensus 362 GIAClQYr~--rlvVSGSSDntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 362 GIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRV 395 (499)
T ss_pred cceehhccC--eEEEecCCCceEEEEeccccHHHHH
Confidence 999987754 4999999999999999999998764
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.1e-28 Score=188.92 Aligned_cols=243 Identities=25% Similarity=0.389 Sum_probs=184.9
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
+....+.+|...+..+.|+|+++++++++.||.|++||+.+++.+..+..|.. .|.++.|++ ++.++++++.|+.|
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~~~~~~~~~~i 117 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSP--DGRILSSSSRDKTI 117 (289)
T ss_pred CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC--cEEEEEEcC--CCCEEEEecCCCeE
Confidence 45677889999999999999999999999999999999998888888887774 499999999 77788888889999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 163 (291)
.+||+++.+... .+..+........+... ....... ..+...+|++........ +..+.. ++|+|++..+
T Consensus 118 ~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 118 KVWDVETGKCLT--TLRGHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVAT-LTGHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEECCCcEEEE--EeccCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEcccccccee-EecCccccceEEECCCcCEE
Confidence 999998665432 11112222333333332 2222222 256677777765443322 223332 8899999766
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
++ ++.|+.+++||++.++.+..+. .| ...+.++. |+|+ +. ++++++.||.|++||+.+ ++
T Consensus 193 ~~--~~~~~~i~i~d~~~~~~~~~~~--------~~----~~~i~~~~-~~~~---~~-~~~~~~~~~~i~i~~~~~-~~ 252 (289)
T cd00200 193 LS--SSSDGTIKLWDLSTGKCLGTLR--------GH----ENGVNSVA-FSPD---GY-LLASGSEDGTIRVWDLRT-GE 252 (289)
T ss_pred EE--ecCCCcEEEEECCCCceecchh--------hc----CCceEEEE-EcCC---Cc-EEEEEcCCCcEEEEEcCC-ce
Confidence 64 3348999999999888877775 33 33667776 9987 33 788888899999999998 78
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+...+..|...|.+++|++++.+|++++.||.|++|+
T Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8888889999999999999999999999999999996
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.2e-28 Score=213.35 Aligned_cols=246 Identities=14% Similarity=0.211 Sum_probs=176.9
Q ss_pred ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----e----EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
+..|.+.|++++|+|+|++||+|+.|+.|+|||.... . ....+.. . ..|.+++|++. ++.+|++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~--~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-R--SKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-c--CceeeEEeccC-CCCEEEEEeCC
Confidence 4458999999999999999999999999999997531 1 1222332 2 45999999873 46899999999
Q ss_pred CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCc
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPK 162 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 162 (291)
|+|++||+.+++... .+..+........+.+............+...+|++......... ..+.. +.|++....
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI-KTKANICCVQFPSESGR 631 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE-ecCCCeEEEEEeCCCCC
Confidence 999999998876533 222333334444444332233344555667888888765543222 22222 667554334
Q ss_pred EEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
.++ +|+.|+.|++||+++.+ ....+. +|. ..+.++. |.+ +. +|++++.|+.|++||++..
T Consensus 632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~--------~h~----~~V~~v~-f~~----~~-~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 632 SLA-FGSADHKVYYYDLRNPKLPLCTMI--------GHS----KTVSYVR-FVD----SS-TLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEE-EEeCCCeEEEEECCCCCccceEec--------CCC----CCEEEEE-EeC----CC-EEEEEECCCEEEEEeCCCC
Confidence 444 67779999999998765 344554 563 3566776 863 33 8999999999999999742
Q ss_pred -----CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 242 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
..++..+.+|...+..++|++++.+|++|+.|+.|++|+.....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 35778899999999999999999999999999999999976543
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.2e-29 Score=206.20 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=173.2
Q ss_pred CCCceEE-ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 7 PPDPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 7 ~~~~~~~-l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
+...+.. +.||.+.|.+++|..-+.+|++|+.|.++++||..+|++..++.+|... |.++...+ ..+++|+.|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~~~----~~~~sgs~D 310 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTIDP----FLLVSGSRD 310 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEccC----ceEeeccCC
Confidence 3445555 9999999999999876779999999999999999999999999999865 99998876 788899999
Q ss_pred CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (291)
.+|++|+++++..+. ++..+..++... .-++..++
T Consensus 311 ~tVkVW~v~n~~~l~--l~~~h~~~V~~v------------------------------------------~~~~~~lv- 345 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLN--LLRGHTGPVNCV------------------------------------------QLDEPLLV- 345 (537)
T ss_pred ceEEEEeccCcceEE--EeccccccEEEE------------------------------------------EecCCEEE-
Confidence 999999999887654 222222222211 12234444
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-Cc
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IP 244 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~~ 244 (291)
+|+.|++|++||+++++++..+. +| .+.+.++. +.+. . .+++|+.|+.|++||+++ . ++
T Consensus 346 -sgs~d~~v~VW~~~~~~cl~sl~--------gH----~~~V~sl~-~~~~----~-~~~Sgs~D~~IkvWdl~~-~~~c 405 (537)
T KOG0274|consen 346 -SGSYDGTVKVWDPRTGKCLKSLS--------GH----TGRVYSLI-VDSE----N-RLLSGSLDTTIKVWDLRT-KRKC 405 (537)
T ss_pred -EEecCceEEEEEhhhceeeeeec--------CC----cceEEEEE-ecCc----c-eEEeeeeccceEeecCCc-hhhh
Confidence 78889999999999999999999 77 44666665 7652 1 899999999999999998 6 89
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+..+.+|.+-|.++.+..+ .|++++.|++|++||.+++++++++
T Consensus 406 ~~tl~~h~~~v~~l~~~~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 406 IHTLQGHTSLVSSLLLRDN--FLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred hhhhcCCcccccccccccc--eeEeccccccEEEeecccCceeeee
Confidence 9999999999988777665 8999999999999999999998764
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=206.92 Aligned_cols=210 Identities=17% Similarity=0.293 Sum_probs=165.2
Q ss_pred EEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----------------------------------------
Q 022870 12 AVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---------------------------------------- 50 (291)
Q Consensus 12 ~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---------------------------------------- 50 (291)
+.+. +|.+.|+++.|++||+|||+||.||.|+||.+...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 89999999999999999999999999999986540
Q ss_pred --------------------eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870 51 --------------------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (291)
Q Consensus 51 --------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 110 (291)
+++..+.+|... |..+.|+. + ++|++++.|.+|++|++....++. .+....
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~D--ILDlSWSK--n-~fLLSSSMDKTVRLWh~~~~~CL~----~F~Hnd 410 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTAD--ILDLSWSK--N-NFLLSSSMDKTVRLWHPGRKECLK----VFSHND 410 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchh--heeccccc--C-CeeEeccccccEEeecCCCcceee----EEecCC
Confidence 012334478755 99999998 5 899999999999999999887755 455555
Q ss_pred EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~ 190 (291)
+..| ++|+|-++++|+ +|+.|+.|+||++...+.+....
T Consensus 411 fVTc---------------------------------------VaFnPvDDryFi-SGSLD~KvRiWsI~d~~Vv~W~D- 449 (712)
T KOG0283|consen 411 FVTC---------------------------------------VAFNPVDDRYFI-SGSLDGKVRLWSISDKKVVDWND- 449 (712)
T ss_pred eeEE---------------------------------------EEecccCCCcEe-ecccccceEEeecCcCeeEeehh-
Confidence 5555 779998877776 89999999999999877665554
Q ss_pred cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc--c------ccceeEEEeec
Q 022870 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--H------LEPVLCLSIDE 262 (291)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--h------~~~v~~~~~~~ 262 (291)
...++++++ |.|+ |+ +.+.|+.+|.+++|+... .+......- | ...|+++.|.|
T Consensus 450 ------------l~~lITAvc-y~Pd---Gk-~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p 511 (712)
T KOG0283|consen 450 ------------LRDLITAVC-YSPD---GK-GAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKKQGKRITGLQFFP 511 (712)
T ss_pred ------------hhhhheeEE-eccC---Cc-eEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccccCceeeeeEecC
Confidence 356889997 9999 55 999999999999999986 444433321 1 22799999964
Q ss_pred CCC-eeEEecCCCeEEEEEcCCCceeee
Q 022870 263 SCN-GGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 263 ~~~-~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
... .|+..+.|..|||+|.++.+++++
T Consensus 512 ~~~~~vLVTSnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 512 GDPDEVLVTSNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred CCCCeEEEecCCCceEEEeccchhhhhh
Confidence 322 466667899999999988777654
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.8e-29 Score=184.21 Aligned_cols=257 Identities=17% Similarity=0.163 Sum_probs=183.2
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeC
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGR 84 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~ 84 (291)
+||+++..+. |.+-|.++... +..+++|++||.+++||. .|+....+.+|.++ |.+++|.-.+ ....|++++.
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcc--eeeeEEEecCCccceEEEecC
Confidence 4557777776 89999999987 569999999999999995 69999999999955 9988886521 2236999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccc-eeccCCCCceeeecc------------------------
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NAKQANEPKDCYERE------------------------ 139 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------ 139 (291)
|.++++|.++.+............+......++...+... ....-...+.+|+..
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 9999999998776544333332233333333332222211 112222333344310
Q ss_pred cCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870 140 VGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (291)
Q Consensus 140 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 215 (291)
..+.+...+.+|.. +.|++.+ .++ +++.|.+|+.||+.++....++.. .....++. ++|
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~-v~y--S~SwDHTIk~WDletg~~~~~~~~-------------~ksl~~i~-~~~ 310 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDAT-VIY--SVSWDHTIKVWDLETGGLKSTLTT-------------NKSLNCIS-YSP 310 (423)
T ss_pred cccCceEEecccccceeeEEEcCCC-ceE--eecccceEEEEEeecccceeeeec-------------CcceeEee-ccc
Confidence 11233445567766 7777733 333 788999999999999998888772 33566676 888
Q ss_pred CCCCCceEEEeecCCCcEEEEEccCCCC--ceeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCc-eeee
Q 022870 216 SKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHST-VSHC 289 (291)
Q Consensus 216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~-~~~~ 289 (291)
... +|++|+.|..|++||.+++.. ...++.+|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ .++.
T Consensus 311 ~~~----Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 311 LSK----LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ccc----eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 743 899999999999999997543 446788999999999998854 457999999999999999877 4444
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.7e-28 Score=212.25 Aligned_cols=242 Identities=15% Similarity=0.231 Sum_probs=175.2
Q ss_pred eEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 11 VAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
...+.+ ...|.+++|++ ++.+|++++.||+|++||+.+++.+..+..|... |++++|+|. ++.+|++|+.||+|+
T Consensus 526 ~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~--V~~l~~~p~-~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR--VWSIDYSSA-DPTLLASGSDDGSVK 601 (793)
T ss_pred eEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC--EEEEEEcCC-CCCEEEEEcCCCEEE
Confidence 334443 46799999998 5789999999999999999999999999989855 999999963 568999999999999
Q ss_pred EEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870 90 CWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (291)
+||++++.... .+... ......+..............+...+|+++........+.+|.. +.|. ++..+
T Consensus 602 iWd~~~~~~~~----~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l- 675 (793)
T PLN00181 602 LWSINQGVSIG----TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL- 675 (793)
T ss_pred EEECCCCcEEE----EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEE-
Confidence 99998775433 22221 12222222221222334445567788888766544445556665 6776 45444
Q ss_pred EEecCCcCeEEEEeCCCc------ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 165 AVAGEQLSEVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
+ +++.|+.|++||++.. .++..+. +|.. .+..+. |+|+ +. +|++|+.||.|++|+.
T Consensus 676 v-s~s~D~~ikiWd~~~~~~~~~~~~l~~~~--------gh~~----~i~~v~-~s~~---~~-~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 676 V-SSSTDNTLKLWDLSMSISGINETPLHSFM--------GHTN----VKNFVG-LSVS---DG-YIATGSETNEVFVYHK 737 (793)
T ss_pred E-EEECCCEEEEEeCCCCccccCCcceEEEc--------CCCC----CeeEEE-EcCC---CC-EEEEEeCCCEEEEEEC
Confidence 3 5667999999999753 4555665 6633 455565 9988 44 9999999999999998
Q ss_pred cCCCCceee-------------ccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 239 RNPGIPLTA-------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 239 ~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
.. ..++.. ...|...|.+++|++++..|++|+.||.|+||++
T Consensus 738 ~~-~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AF-PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CC-CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 75 333221 2335567999999999999999999999999986
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-27 Score=174.77 Aligned_cols=248 Identities=17% Similarity=0.279 Sum_probs=182.0
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE---------------------------------
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--------------------------------- 55 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--------------------------------- 55 (291)
++.+.++.-...|+++.|+++|.++++++.|.+++|||..+++.+++
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 34556666788899999999999999999999999999987665433
Q ss_pred -----------EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccc
Q 022870 56 -----------SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124 (291)
Q Consensus 56 -----------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (291)
+.+|... |.+++.+| -++.+++++.|++|++||++..++.. -+.......+++.+. ...
T Consensus 85 Lsl~dNkylRYF~GH~~~--V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~AfDp~--GLi 154 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKR--VNSLSVSP--KDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIAAFDPE--GLI 154 (311)
T ss_pred EEeecCceEEEcCCCCce--EEEEEecC--CCCeEEecccCCeEEeeEecCCCCce----EEecCCCcceeECCC--CcE
Confidence 3477744 99999999 77999999999999999999877654 222223333333333 233
Q ss_pred eeccCCC-CceeeecccCc-cccccC--C--CCCC---cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870 125 NAKQANE-PKDCYEREVGE-TVDTDS--L--CDSK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (291)
Q Consensus 125 ~~~~~~~-~~~~~~~~~~~-~~~~~~--~--~~~~---~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~ 195 (291)
.+...+. .+.+++++... .+-..+ . .+.. +.|+|+|+.+++++. .+.+++.|.-+|....++.
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs------ 226 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFS------ 226 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEe------
Confidence 3333333 66777776542 111111 1 1222 999999999997554 5889999999999888887
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc-cccceeEEEeecCCCeeEEecCCC
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg 274 (291)
++....... ... +|.|+ ++ ++++|+.||+|.+|++++ +..+..+++ +..++.++.|+|...+++|+ +.
T Consensus 227 --~~~~~~~~~-~~a-~ftPd---s~-Fvl~gs~dg~i~vw~~~t-g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s 295 (311)
T KOG1446|consen 227 --GYPNAGNLP-LSA-TFTPD---SK-FVLSGSDDGTIHVWNLET-GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SS 295 (311)
T ss_pred --eccCCCCcc-eeE-EECCC---Cc-EEEEecCCCcEEEEEcCC-CcEeeEecCCCCCCccccccCCceeeeeec--Cc
Confidence 454433333 333 39999 44 999999999999999999 888999888 78999999999997666665 56
Q ss_pred eEEEEEcCCCc
Q 022870 275 KIVLYNLDHST 285 (291)
Q Consensus 275 ~i~vw~~~~~~ 285 (291)
.+.+|=....+
T Consensus 296 ~l~fw~p~~~~ 306 (311)
T KOG1446|consen 296 NLVFWLPDEDA 306 (311)
T ss_pred eEEEEeccccc
Confidence 78888765443
No 56
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.2e-29 Score=198.54 Aligned_cols=257 Identities=18% Similarity=0.181 Sum_probs=200.7
Q ss_pred CceEEecCCccceeEEEEc-CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
++.+.+-|-.+.|..|+|- |+.++||.++..+.+|+++..+..+. .+.+|... |.++.... +|.+|+||+.|.+
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~--vlSL~~~~--~g~llat~sKD~s 388 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA--VLSLDVWS--SGDLLATGSKDKS 388 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh--eeeeeecc--cCcEEEEecCCce
Confidence 3456677888999999986 47789999999999999998877766 78889855 99999555 6689999999999
Q ss_pred EEEEECCCCCCCCCCccc--cccceEEEEEeecccCccceeccCCCCceeeecccCcc--------ccccCCCCCC----
Q 022870 88 VKCWDIENGGLSSNPSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--------VDTDSLCDSK---- 153 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---- 153 (291)
+++|.++.+.....++.. .+.+......++....+.............|.+..... .......|.+
T Consensus 389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 999999555433222222 33334444444444444445556667777887765211 1112234544
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
++++|+.. +++ +|+.|++.+||++++.+....+. || +..++++. |+|. .+ .+++++.|++|
T Consensus 469 Vaia~ndk-LiA-T~SqDktaKiW~le~~~l~~vLs--------GH----~RGvw~V~-Fs~~---dq-~laT~SgD~Tv 529 (775)
T KOG0319|consen 469 VAIAPNDK-LIA-TGSQDKTAKIWDLEQLRLLGVLS--------GH----TRGVWCVS-FSKN---DQ-LLATCSGDKTV 529 (775)
T ss_pred eEecCCCc-eEE-ecccccceeeecccCceEEEEee--------CC----ccceEEEE-eccc---cc-eeEeccCCceE
Confidence 88999875 444 89999999999999988889998 88 45688998 9998 34 99999999999
Q ss_pred EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+||.+.+ ..+++++.||...|..+.|-.++..|+|++.||.|++|++.++.++.++
T Consensus 530 KIW~is~-fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 530 KIWSIST-FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred EEEEecc-ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 9999999 9999999999999999999999999999999999999999999887653
No 57
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=175.39 Aligned_cols=206 Identities=18% Similarity=0.262 Sum_probs=163.3
Q ss_pred EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCC
Q 022870 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (291)
Q Consensus 53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (291)
.+++++|... |.++.|++ |.++|++++.||.+.|||.-+..... .++++..=...|.+++.. .....++.
T Consensus 48 rr~LkGH~~K--i~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~sPSg----~~VAcGGL 117 (343)
T KOG0286|consen 48 RRTLKGHLNK--IYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYSPSG----NFVACGGL 117 (343)
T ss_pred EEEecccccc--eeeeEecC--CcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEECCCC----CeEEecCc
Confidence 4778899966 99999999 99999999999999999988776544 444554444455554443 33333332
Q ss_pred ---ceeeecccC--c---cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870 133 ---KDCYEREVG--E---TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (291)
Q Consensus 133 ---~~~~~~~~~--~---~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 200 (291)
-.+|++... + .+...+.+|.. ..|-+|+ +++ +|+.|.+..+||+++++.+..|. +|
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~il--T~SGD~TCalWDie~g~~~~~f~--------GH- 185 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HIL--TGSGDMTCALWDIETGQQTQVFH--------GH- 185 (343)
T ss_pred CceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceE--ecCCCceEEEEEcccceEEEEec--------CC-
Confidence 233444422 2 45566888888 5666654 555 77889999999999999999998 77
Q ss_pred CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
.+-+.++. ++|. +++ .+++|+-|+..++||+|. +..++.|.+|+..|+++.|.|+|.-+++||+|++.|+||
T Consensus 186 ---~gDV~sls-l~p~--~~n-tFvSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 186 ---TGDVMSLS-LSPS--DGN-TFVSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred ---cccEEEEe-cCCC--CCC-eEEecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 55788887 9995 244 899999999999999999 899999999999999999999999999999999999999
Q ss_pred cCCCceee
Q 022870 281 LDHSTVSH 288 (291)
Q Consensus 281 ~~~~~~~~ 288 (291)
++..+.+.
T Consensus 258 lRaD~~~a 265 (343)
T KOG0286|consen 258 LRADQELA 265 (343)
T ss_pred ecCCcEEe
Confidence 99877654
No 58
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-28 Score=175.10 Aligned_cols=218 Identities=18% Similarity=0.265 Sum_probs=169.6
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC--
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-- 84 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-- 84 (291)
.++.+.+++||++.|+|++.+-+..+++||+.|.++++||+++|+++..++.. .+|..+.|++ +|++++....
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQ 115 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhh
Confidence 45778899999999999999999999999999999999999999999998865 5699999999 8888876654
Q ss_pred ---CCeEEEEECCCCCC---CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870 85 ---DGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (291)
Q Consensus 85 ---dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (291)
.+.|.++|++.... ..+|...+........ . .-|.|
T Consensus 116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit--~------------------------------------a~Wg~ 157 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT--S------------------------------------ALWGP 157 (327)
T ss_pred cCcceEEEEEEccCChhhhcccCceEEecCCcccee--e------------------------------------eeecc
Confidence 46899999985432 1122222222110000 0 34888
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
-++.++ +|..||.|..||+++++....-.. .| ...+..++ |+|+.. ++++++.|.+-++||.
T Consensus 158 l~~~ii--~Ghe~G~is~~da~~g~~~v~s~~-------~h----~~~Ind~q-~s~d~T----~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 158 LGETII--AGHEDGSISIYDARTGKELVDSDE-------EH----SSKINDLQ-FSRDRT----YFITGSKDTTAKLVDV 219 (327)
T ss_pred cCCEEE--EecCCCcEEEEEcccCceeeechh-------hh----cccccccc-ccCCcc----eEEecccCccceeeec
Confidence 888776 788899999999999865544432 34 33667776 999854 9999999999999998
Q ss_pred cCCCC------------------------------------------------------ceeeccccccceeEEEeecCC
Q 022870 239 RNPGI------------------------------------------------------PLTAMKVHLEPVLCLSIDESC 264 (291)
Q Consensus 239 ~~~~~------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~ 264 (291)
++... .+..+++|-++|++++|+|+|
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 76211 144567899999999999999
Q ss_pred CeeEEecCCCeEEEEEcCCCc
Q 022870 265 NGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 265 ~~l~s~s~dg~i~vw~~~~~~ 285 (291)
+..+||++||.||+.-++..-
T Consensus 300 ksYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred cccccCCCCceEEEEEeccch
Confidence 999999999999998776543
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-28 Score=182.28 Aligned_cols=253 Identities=18% Similarity=0.307 Sum_probs=185.5
Q ss_pred CCCceEEecCCccceeEEEEcCCC---CEEEEecCCCeEEEEeCCCCeEE----EEEeeecCCcceEEEEEeecCCCCeE
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTK---PILFAGTTGGELRIWDTVQHRTV----SSSWVHSAAHGIVSVATGPSIGLNKV 79 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l 79 (291)
.++..+++.||.++|.+++|.... ..|++++.|.++++|..+.++.. ..-.+|... |.++...+ ++..+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~--sgtr~ 208 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDS--SGTRF 208 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc--eeEEEecC--CCCeE
Confidence 467889999999999998886533 35999999999999998876432 233478744 99999999 99999
Q ss_pred EEEeCCCeEEEEECCCCCC---------------------CCCCccccccceEEEEEeecccCccceeccCCCCceeeec
Q 022870 80 ISQGRDGTVKCWDIENGGL---------------------SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER 138 (291)
Q Consensus 80 ~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
++|+.|.+|++|+.++... .+.|+.++..+......+-...........-.-....|++
T Consensus 209 ~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 209 CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEe
Confidence 9999999999999332110 1123333333332222222222222333344456777888
Q ss_pred ccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcc---eeeEecccccCCCCCCCCCcceeeeeEEEe
Q 022870 139 EVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 213 (291)
Q Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (291)
..............- ++++|... +++ +|+.|..+++||.+++. ..+++. +| ...+.++. |
T Consensus 289 etg~~~~~~~~~ksl~~i~~~~~~~-Ll~-~gssdr~irl~DPR~~~gs~v~~s~~--------gH----~nwVssvk-w 353 (423)
T KOG0313|consen 289 ETGGLKSTLTTNKSLNCISYSPLSK-LLA-SGSSDRHIRLWDPRTGDGSVVSQSLI--------GH----KNWVSSVK-W 353 (423)
T ss_pred ecccceeeeecCcceeEeecccccc-eee-ecCCCCceeecCCCCCCCceeEEeee--------cc----hhhhhhee-c
Confidence 877766655555444 77888654 444 78889999999999875 234454 77 45788887 9
Q ss_pred cCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 214 ~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
+|. ..+.|++|+.|+++++||+|+...++..+.+|.+.|.++.|...+ ++++||.|++|+++.-.
T Consensus 354 sp~---~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPT---NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCC---CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-eEEeccCcceEEEeccc
Confidence 998 334899999999999999999556999999999999999997654 68999999999998754
No 60
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=178.84 Aligned_cols=245 Identities=17% Similarity=0.304 Sum_probs=187.7
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.++..+..|.++|++++. ++.++|+|+.|-+|+|||+.+...+..+-.|.+. |+++.|.+....+.|++|+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags--itaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS--ITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccc--eEEEEecCCcchhheeeecCCCcE
Confidence 347888999999999998 5789999999999999999999999888888755 999999983223489999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMA 165 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 165 (291)
.+|+...-.+.. +++.+......+++..+.. ............|++-.++........+.. +.|+|.|.++++
T Consensus 110 ~iw~~~~W~~~~----slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLK----SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEee----eecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999998765543 4444444344444444444 334455566778888776644433333333 899999997765
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
.+. ..|-+|.+.+......+.. ...+.++. |.. +. +|++|.+|+.|.+||..+ ..++
T Consensus 186 -~~~--~~i~i~q~d~A~v~~~i~~-------------~~r~l~~~-~l~----~~-~L~vG~d~~~i~~~D~ds-~~~~ 242 (362)
T KOG0294|consen 186 -SGR--NKIDIYQLDNASVFREIEN-------------PKRILCAT-FLD----GS-ELLVGGDNEWISLKDTDS-DTPL 242 (362)
T ss_pred -Eec--cEEEEEecccHhHhhhhhc-------------cccceeee-ecC----Cc-eEEEecCCceEEEeccCC-Cccc
Confidence 343 5799999988776655552 11233333 432 22 899999999999999998 8999
Q ss_pred eeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCCC
Q 022870 246 TAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
..+.+|..+|.++.+ +|.+.+|+|+|.||.|+|||++..
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999999999996 788999999999999999999876
No 61
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=196.41 Aligned_cols=248 Identities=16% Similarity=0.280 Sum_probs=188.3
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (291)
-+.+.||++.|.++....+|.+|+||+.|.++++|.++++ .++....+|.+. |.+++++.. ....|+++|.|+
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s--vgava~~~~-~asffvsvS~D~ 434 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS--VGAVAGSKL-GASFFVSVSQDC 434 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc--cceeeeccc-CccEEEEecCCc
Confidence 3478999999999997677889999999999999988543 245556678865 999999762 336899999999
Q ss_pred eEEEEECCCCCCCCCC-cc----ccccceEEEEEeecccCccce-eccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870 87 TVKCWDIENGGLSSNP-SL----TIKTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (291)
++++|++...+....| .+ +...+......+.+....... .........+|++. .......+.+|.. +.|
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEe
Confidence 9999999873322211 11 112222222222333222222 22233445667777 4456667888887 899
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
+|... +++ ++|.|++|+||.+.+..++.++. || ...+.... |-.+ |. .|++++.||.|++|
T Consensus 514 s~~dq-~la-T~SgD~TvKIW~is~fSClkT~e--------GH----~~aVlra~-F~~~---~~-qliS~~adGliKlW 574 (775)
T KOG0319|consen 514 SKNDQ-LLA-TCSGDKTVKIWSISTFSCLKTFE--------GH----TSAVLRAS-FIRN---GK-QLISAGADGLIKLW 574 (775)
T ss_pred ccccc-eeE-eccCCceEEEEEeccceeeeeec--------Cc----cceeEeee-eeeC---Cc-EEEeccCCCcEEEE
Confidence 99875 444 66779999999999999999999 88 44566666 8766 44 89999999999999
Q ss_pred EccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
++++ ..++.++.+|.+.|++++.++...+++||+.||.|.+|.=.
T Consensus 575 nikt-~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 575 NIKT-NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eccc-hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 9999 99999999999999999999999999999999999999643
No 62
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=4.6e-27 Score=182.26 Aligned_cols=252 Identities=20% Similarity=0.284 Sum_probs=182.4
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD- 85 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d- 85 (291)
.....+.+|..+++-..|+|.|.++|+|...|+|||||....+. ..+++.-. .+|..++|++ ++.++++.++-
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~--ds~RI~avGEGr 125 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDF--DSKRIAAVGEGR 125 (603)
T ss_pred cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecc--cccccceeCC--CCcEEEEEecCc
Confidence 34667889999999999999999999999999999999765332 23444444 5599999999 99999887753
Q ss_pred ---CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC
Q 022870 86 ---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA 158 (291)
Q Consensus 86 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 158 (291)
|.+.+||--+ ... .+..+......+.+.+..-.......+......+.-.+ ......+..|.. +.|+|
T Consensus 126 erfg~~F~~DSG~--SvG--ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysP 200 (603)
T KOG0318|consen 126 ERFGHVFLWDSGN--SVG--EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSP 200 (603)
T ss_pred cceeEEEEecCCC--ccc--eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECC
Confidence 4566777543 222 22344444444444433222222222223333332222 223334455555 89999
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
||+. ++++|+ ||.+.+||=.+++.+..+.. ...+.+.++++. |+||+. .+++++.|.+++|||+
T Consensus 201 DG~~-Fat~gs-Dgki~iyDGktge~vg~l~~---------~~aHkGsIfals-WsPDs~----~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 201 DGSR-FATAGS-DGKIYIYDGKTGEKVGELED---------SDAHKGSIFALS-WSPDST----QFLTVSADKTIKIWDV 264 (603)
T ss_pred CCCe-EEEecC-CccEEEEcCCCccEEEEecC---------CCCccccEEEEE-ECCCCc----eEEEecCCceEEEEEe
Confidence 9865 554555 99999999999999999873 234578899998 999954 8999999999999998
Q ss_pred cCCCC-------------------------------------------ceeeccccccceeEEEeecCCCeeEEecCCCe
Q 022870 239 RNPGI-------------------------------------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQK 275 (291)
Q Consensus 239 ~~~~~-------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~ 275 (291)
.+ .+ ++..+.+|...|+++..++++.+|++|+.||.
T Consensus 265 s~-~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 265 ST-NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred ec-cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 76 32 24556789999999999999999999999999
Q ss_pred EEEEEcCCCce
Q 022870 276 IVLYNLDHSTV 286 (291)
Q Consensus 276 i~vw~~~~~~~ 286 (291)
|.-|+..++..
T Consensus 344 I~~W~~~~g~~ 354 (603)
T KOG0318|consen 344 INSWDSGSGTS 354 (603)
T ss_pred EEEEecCCccc
Confidence 99999987754
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=178.93 Aligned_cols=256 Identities=12% Similarity=0.195 Sum_probs=186.1
Q ss_pred CceEEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE--------eeecCCcceEEEEEeecCCCCeE
Q 022870 9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--------WVHSAAHGIVSVATGPSIGLNKV 79 (291)
Q Consensus 9 ~~~~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~l 79 (291)
...+.++ |.++-+-|..|+|||++|++|+.||.|.+||..+|+..+.+ ..+. ++|.|+.|+. |...+
T Consensus 203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd--~aVlci~FSR--DsEMl 278 (508)
T KOG0275|consen 203 QLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD--DAVLCISFSR--DSEML 278 (508)
T ss_pred HhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecc--cceEEEeecc--cHHHh
Confidence 3334444 45677899999999999999999999999999988765543 3455 4599999999 98999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCccc-cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----c
Q 022870 80 ISQGRDGTVKCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----D 154 (291)
Q Consensus 80 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 154 (291)
++|+.||.|++|.++++.+.+ .+. .+........|+-..+....+. ......+-.+..+ .....+.+|.. .
T Consensus 279 AsGsqDGkIKvWri~tG~ClR--rFdrAHtkGvt~l~FSrD~SqiLS~s-fD~tvRiHGlKSG-K~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLR--RFDRAHTKGVTCLSFSRDNSQILSAS-FDQTVRIHGLKSG-KCLKEFRGHSSYVNEA 354 (508)
T ss_pred hccCcCCcEEEEEEecchHHH--HhhhhhccCeeEEEEccCcchhhccc-ccceEEEeccccc-hhHHHhcCccccccce
Confidence 999999999999999998866 222 2223333333333332222111 1111222223333 33446777777 8
Q ss_pred ccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
.|+++|.+++ +++.||+|++|+..+.+++.+++.. + ....+.++. .-|..+ + .++++...++|+
T Consensus 355 ~ft~dG~~ii--saSsDgtvkvW~~KtteC~~Tfk~~------~----~d~~vnsv~-~~PKnp--e-h~iVCNrsntv~ 418 (508)
T KOG0275|consen 355 TFTDDGHHII--SASSDGTVKVWHGKTTECLSTFKPL------G----TDYPVNSVI-LLPKNP--E-HFIVCNRSNTVY 418 (508)
T ss_pred EEcCCCCeEE--EecCCccEEEecCcchhhhhhccCC------C----CcccceeEE-EcCCCC--c-eEEEEcCCCeEE
Confidence 8999998877 6677999999999999999999842 1 233455555 666533 2 788899999999
Q ss_pred EEEccCCCCceeecccc---ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 235 VWDIRNPGIPLTAMKVH---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
|.++. ++.++++... .+...+.+.+|.|.++.+.+.|+.++-+.+.+|++-+++
T Consensus 419 imn~q--GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 419 IMNMQ--GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred EEecc--ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 99998 7888887632 235566778999999999999999999999999987765
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=185.83 Aligned_cols=246 Identities=17% Similarity=0.269 Sum_probs=185.9
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
+.+.+|.|-.++|+.+.|.+++..+++++.|+.+++|++.+.+...++.+|... |+++.|.. ....+++|+.|.+|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~--~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKL--SHSRVVSGSADRTI 285 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc--eeeehhhc--cccceeeccccchh
Confidence 367788999999999999999999999999999999999999999999999966 99999988 55569999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCCCC-cccCCCCCcEEEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCDSK-DDVPAEGPKYMAV 166 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 166 (291)
++||+....+...+...-.......... .....-....+..|+.+........ ..+.-. +..++++..++
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~~~------~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lL-- 357 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCSIS------DVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELL-- 357 (459)
T ss_pred hhhhhhhhheeccccccccccceEecce------eeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEe--
Confidence 9999998777654333323222222111 1111112233556666555433322 222211 88899998877
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+++.|.++.+.|+++.+....+... +... ......+. |+|++. |+++|+.||.|+||++.+ +++..
T Consensus 358 sssRDdtl~viDlRt~eI~~~~sA~------g~k~--asDwtrvv-fSpd~~----YvaAGS~dgsv~iW~v~t-gKlE~ 423 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEIRQTFSAE------GFKC--ASDWTRVV-FSPDGS----YVAAGSADGSVYIWSVFT-GKLEK 423 (459)
T ss_pred eecCCCceeeeecccccEEEEeecc------cccc--ccccceeE-ECCCCc----eeeeccCCCcEEEEEccC-ceEEE
Confidence 4577999999999999988888743 2211 22245565 999844 999999999999999998 88887
Q ss_pred ecccccc--ceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 247 AMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 247 ~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
.+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 7775444 599999999999999999999999993
No 65
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=4.6e-28 Score=184.40 Aligned_cols=209 Identities=17% Similarity=0.257 Sum_probs=161.7
Q ss_pred CCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe----------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 16 ~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
-|.+.|+.+.+.| +..++|+++..+.|.|||..+.. +-..+.+|... -++++|++.. ...|++++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~-~g~Lls~~~ 198 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQ-EGTLLSGSD 198 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--cccccccccc-ceeEeeccC
Confidence 4999999999999 55677888999999999976521 12267788764 7899999963 368999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCC
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEG 160 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 160 (291)
|++|++||+........ ... ....+.+|.. ++|++..
T Consensus 199 d~~i~lwdi~~~~~~~~-~~~--------------------------------------p~~~~~~h~~~VeDV~~h~~h 239 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDK-VVD--------------------------------------PKTIFSGHEDVVEDVAWHPLH 239 (422)
T ss_pred CCcEEEEeccccccCCc-ccc--------------------------------------ceEEeecCCcceehhhccccc
Confidence 99999999987643210 000 0011122222 7799999
Q ss_pred CcEEEEecCCcCeEEEEeCCC--cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 161 PKYMAVAGEQLSEVEIWDLNT--AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
..+|+++|. |+.+.|||+|+ .++..... +| .+.+.++. |+|.+ + ..||+|+.|++|++||+
T Consensus 240 ~~lF~sv~d-d~~L~iwD~R~~~~~~~~~~~--------ah----~~~vn~~~-fnp~~--~-~ilAT~S~D~tV~LwDl 302 (422)
T KOG0264|consen 240 EDLFGSVGD-DGKLMIWDTRSNTSKPSHSVK--------AH----SAEVNCVA-FNPFN--E-FILATGSADKTVALWDL 302 (422)
T ss_pred hhhheeecC-CCeEEEEEcCCCCCCCccccc--------cc----CCceeEEE-eCCCC--C-ceEEeccCCCcEEEeec
Confidence 999886665 99999999996 33333333 44 55677887 99983 3 39999999999999999
Q ss_pred cCCCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870 239 RNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~ 283 (291)
|+..+++..+.+|...|..+.|+|+ ...|||++.|+.+.|||+..
T Consensus 303 RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 303 RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred hhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 9999999999999999999999985 45789999999999999975
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-28 Score=199.53 Aligned_cols=210 Identities=17% Similarity=0.277 Sum_probs=176.0
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
..++..+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++ |..+.|+| .+.++++|+.|..|++|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGp--VRgv~FH~--~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGP--VRGVDFHP--TQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCc--cceeeecC--CCCeEEecCCccEEEEE
Confidence 346667788999999999999999999999999999999999999999955 99999999 88999999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (291)
+..+.++.. ++..+-..... +.|++.-+.++ ++|.|
T Consensus 79 nYk~rrclf----tL~GHlDYVRt--------------------------------------~~FHheyPWIl--SASDD 114 (1202)
T KOG0292|consen 79 NYKTRRCLF----TLLGHLDYVRT--------------------------------------VFFHHEYPWIL--SASDD 114 (1202)
T ss_pred ecccceehh----hhccccceeEE--------------------------------------eeccCCCceEE--EccCC
Confidence 999987743 44333211111 34788777666 78889
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC--------
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-------- 243 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-------- 243 (291)
.+|+||+..+++++..+. || +..+++.+ |+|... .+++++-|.+|||||+.-..+
T Consensus 115 QTIrIWNwqsr~~iavlt--------GH----nHYVMcAq-FhptED----lIVSaSLDQTVRVWDisGLRkk~~~pg~~ 177 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIAVLT--------GH----NHYVMCAQ-FHPTED----LIVSASLDQTVRVWDISGLRKKNKAPGSL 177 (1202)
T ss_pred CeEEEEeccCCceEEEEe--------cC----ceEEEeec-cCCccc----eEEEecccceEEEEeecchhccCCCCCCc
Confidence 999999999999999999 77 55888887 999743 899999999999999853110
Q ss_pred --------------------ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 244 --------------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 244 --------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
....+.||...|+-++|+|...+++||++|..|++|.++..+.
T Consensus 178 e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 178 EDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred hhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 1234678999999999999999999999999999999987654
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.7e-27 Score=181.41 Aligned_cols=215 Identities=20% Similarity=0.267 Sum_probs=165.2
Q ss_pred CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe-------EEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (291)
+|-.+|.||++.=++|+|++ ..-.|++|+.|++|++||+.... ....+.+|... |..++|++. +..+|+
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~--VeDV~~h~~-h~~lF~ 244 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV--VEDVAWHPL-HEDLFG 244 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc--eehhhcccc-chhhhe
Confidence 55668999999899999999 34489999999999999987532 34456777755 999999996 457899
Q ss_pred EEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC
Q 022870 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (291)
Q Consensus 81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (291)
+++.|+.+.|||++++. .++......+...... ++|+|.+
T Consensus 245 sv~dd~~L~iwD~R~~~--~~~~~~~~ah~~~vn~--------------------------------------~~fnp~~ 284 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT--SKPSHSVKAHSAEVNC--------------------------------------VAFNPFN 284 (422)
T ss_pred eecCCCeEEEEEcCCCC--CCCcccccccCCceeE--------------------------------------EEeCCCC
Confidence 99999999999999641 1222222222111110 5689998
Q ss_pred CcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
..++| +|+.|++|.+||+|+.. ++.++. +| ...+..+. |+|.. ...|++++.|+.+.|||+.
T Consensus 285 ~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e--------~H----~dev~~V~-WSPh~---etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 285 EFILA-TGSADKTVALWDLRNLNKPLHTFE--------GH----EDEVFQVE-WSPHN---ETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceEE-eccCCCcEEEeechhcccCceecc--------CC----CcceEEEE-eCCCC---CceeEecccCCcEEEEecc
Confidence 88777 67789999999999864 556666 66 45688887 99983 2399999999999999997
Q ss_pred CCCC-------------ceeeccccccceeEEEeecCCCee-EEecCCCeEEEEEcCC
Q 022870 240 NPGI-------------PLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDH 283 (291)
Q Consensus 240 ~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~dg~i~vw~~~~ 283 (291)
.-+. ++..-.||...|..+.|+|+..++ +|.+.|+.+.||....
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 5332 245667899999999999987764 7888999999999863
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=8e-28 Score=186.14 Aligned_cols=229 Identities=16% Similarity=0.205 Sum_probs=164.6
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe----EEEEEee-ecCCcceEEEEEeecCCCCeEE
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWV-HSAAHGIVSVATGPSIGLNKVI 80 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~ 80 (291)
.|......|++|+..|.++++.|.|..|++|+.|.+|++||+.... ..+.+.. .. ..|.+++|++ .|+.|+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~--Tg~~iL 230 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSV--TGDQIL 230 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecC--CCCeEE
Confidence 5667778899999999999999999999999999999999987432 1222222 22 3399999999 889999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (291)
Q Consensus 81 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (291)
+.+.....+|+|-....... ..+...+.. ++ ....+|.. .+|
T Consensus 231 vvsg~aqakl~DRdG~~~~e----~~KGDQYI~-----------------------Dm-------~nTKGHia~lt~g~w 276 (641)
T KOG0772|consen 231 VVSGSAQAKLLDRDGFEIVE----FSKGDQYIR-----------------------DM-------YNTKGHIAELTCGCW 276 (641)
T ss_pred EEecCcceeEEccCCceeee----eeccchhhh-----------------------hh-------hccCCceeeeecccc
Confidence 88888999999977654322 111111100 00 01111211 569
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (291)
+|+.+..+++ ++.||++++||+...+ ....++. .-....+..+..+. |+|+ |. .||+|+.||.|.+
T Consensus 277 hP~~k~~FlT-~s~DgtlRiWdv~~~k~q~qVik~-------k~~~g~Rv~~tsC~-~nrd---g~-~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 277 HPDNKEEFLT-CSYDGTLRIWDVNNTKSQLQVIKT-------KPAGGKRVPVTSCA-WNRD---GK-LIAAGCLDGSIQI 343 (641)
T ss_pred ccCcccceEE-ecCCCcEEEEecCCchhheeEEee-------ccCCCcccCceeee-cCCC---cc-hhhhcccCCceee
Confidence 9999888884 5569999999998654 3344432 11122344556665 9999 44 8999999999999
Q ss_pred EEccCCC-Cc-eeecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 236 WDIRNPG-IP-LTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 236 wd~~~~~-~~-~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
|+..+.. .+ +..-++|.. .|++|.|+++|++|++-|.|+++++||++..+
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 9986422 22 233457876 89999999999999999999999999998754
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=183.36 Aligned_cols=256 Identities=16% Similarity=0.235 Sum_probs=195.8
Q ss_pred CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
..|.+....+..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..+ +|+++.|.+ ++..++++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g--~it~~d~d~--~~~~~iAa 237 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG--NITSIDFDS--DNKHVIAA 237 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCC--CcceeeecC--CCceEEee
Confidence 45777888999999999999999998899999999999999987665 5666766664 499999999 88999999
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCC
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (291)
+.|+.+++|++...+... .++.+........+...... ............|++.........+.+..- ++.+ .
T Consensus 238 s~d~~~r~Wnvd~~r~~~--TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRH--TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--I 312 (459)
T ss_pred cCCCceeeeeccchhhhh--hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--c
Confidence 999999999999887655 33444444433333322222 233334455667788777666666665544 4444 2
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
..+++|..|+.|++||.++..+....+ ..+.+.++. .+++ |. .|++.+.|..+.+.|+++
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-------------~gg~vtSl~-ls~~---g~-~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSADKTRSVP-------------LGGRVTSLD-LSMD---GL-ELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred --eeeeecccccceEEEeccCCceeeEee-------------cCcceeeEe-eccC---Ce-EEeeecCCCceeeeeccc
Confidence 223389999999999999999988887 245778887 8887 44 788889999999999998
Q ss_pred CCCceeecccc----ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 241 PGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 241 ~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
......+.+. ....+.+.|+|++.|+++||.||.|+||++.++++-..+
T Consensus 373 -~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 373 -KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred -ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 6665555431 234889999999999999999999999999999987643
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=182.49 Aligned_cols=245 Identities=18% Similarity=0.266 Sum_probs=193.0
Q ss_pred ccceeEEEEcCCC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 18 RASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 18 ~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
.+.|.+++|+|.. .-+|+.+. -.|.||+..+....+.+.-.. +.|.++.|.. ||.+|++|...|.|+++|..+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence 4679999999943 33444443 479999988777766665555 4499999999 9999999999999999996654
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcC
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~ 172 (291)
..++ .+..+..+.+...|++..........++....+|++..... ...+.+|.+ .+++|..+++++ +|+.||
T Consensus 101 ~iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivv-tGsYDg 176 (487)
T KOG0310|consen 101 VILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVV-TGSYDG 176 (487)
T ss_pred HHHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEE-ecCCCc
Confidence 3332 33455567777777777777777778888888999988875 667888888 889999888776 788899
Q ss_pred eEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870 173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (291)
Q Consensus 173 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (291)
.|++||++.. ..+.++. | ..++-.+. |-|.+ . .+++++. ..|+|||+.++++.+..+..|
T Consensus 177 ~vrl~DtR~~~~~v~eln---------h----g~pVe~vl-~lpsg---s-~iasAgG-n~vkVWDl~~G~qll~~~~~H 237 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVVELN---------H----GCPVESVL-ALPSG---S-LIASAGG-NSVKVWDLTTGGQLLTSMFNH 237 (487)
T ss_pred eEEEEEeccCCceeEEec---------C----CCceeeEE-EcCCC---C-EEEEcCC-CeEEEEEecCCceehhhhhcc
Confidence 9999999987 5555564 3 33455555 88874 3 6777664 579999999878888888889
Q ss_pred ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
...|+|+.+..++..|+|||-|+.+++||+.+.+.++.+
T Consensus 238 ~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 238 NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred cceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 999999999999999999999999999999998888753
No 71
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.9e-27 Score=172.19 Aligned_cols=211 Identities=21% Similarity=0.313 Sum_probs=162.0
Q ss_pred ecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe------------EE-E--EEeeecCCcceEEEEEeecCCCC
Q 022870 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR------------TV-S--SSWVHSAAHGIVSVATGPSIGLN 77 (291)
Q Consensus 14 l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~------------~~-~--~~~~~~~~~~v~~~~~~~~~~~~ 77 (291)
.+.|.+.|+++...+ .|+++++|+.||.+.+||+++.. ++ . .-.+|. -.|.++.|.|. |..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hk--y~iss~~WyP~-DtG 115 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHK--YAISSAIWYPI-DTG 115 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccce--eeeeeeEEeee-cCc
Confidence 456999999999999 89999999999999999997532 11 0 012344 44999999997 557
Q ss_pred eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC
Q 022870 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (291)
Q Consensus 78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (291)
.+.+++.|.++++||..+.+... .+.++..-+. .+++
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~--~F~me~~VYs-----------------------------------------hamS 152 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAV--DFKMEGKVYS-----------------------------------------HAMS 152 (397)
T ss_pred eeecccccceEEEeecccceeeE--EeecCceeeh-----------------------------------------hhcC
Confidence 88999999999999999875422 2222211111 2244
Q ss_pred CCC-CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 158 AEG-PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 158 ~~~-~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
|-. .+.++++|..|-.|++-|+.++.....+. || +..++++. |+|. .+..|++|+.||.|++|
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--------GH----r~~vlaV~-Wsp~---~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--------GH----RDGVLAVE-WSPS---SEWVLATGSADGAIRLW 216 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeec--------cc----cCceEEEE-eccC---ceeEEEecCCCceEEEE
Confidence 432 24566689999999999999999999998 88 55688887 9998 44589999999999999
Q ss_pred EccCCCCceeec--------------cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 237 DIRNPGIPLTAM--------------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 237 d~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
|++....+...+ ..|.+.|++++|..++.++++++.|..+++|+..+|+-
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 998642333332 35677899999999999999999999999999988753
No 72
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=181.33 Aligned_cols=213 Identities=17% Similarity=0.259 Sum_probs=165.8
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-.. |+|+.|+. ||..|+|||.||.|.+|.+...-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~--ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS--ITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc--eeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence 578999999999999999989999999999999999999888855 99999999 99999999999999999976421
Q ss_pred C-----CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870 98 L-----SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 98 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (291)
. ...|...+..+......+. +.+.+...+++ +.+.|.
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~------------------------------------ig~Gg~~~rl~--TaS~D~ 198 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQ------------------------------------IGSGGTNARLY--TASEDR 198 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEE------------------------------------ecCCCccceEE--EecCCc
Confidence 1 1111222222221111111 11333334444 777899
Q ss_pred eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC----------
Q 022870 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---------- 242 (291)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~---------- 242 (291)
++++||+..+..+.++.. ...+.++. ..|. ++ .+++|+++|.|.+.++....
T Consensus 199 t~k~wdlS~g~LLlti~f-------------p~si~av~-lDpa---e~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF-------------PSSIKAVA-LDPA---ER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred eEEEEEeccceeeEEEec-------------CCcceeEE-Eccc---cc-EEEecCCcceEEeeehhcCCcccccccccc
Confidence 999999999998888763 34566676 8887 33 89999999999999886422
Q ss_pred -----Cceeecccccc--ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 243 -----IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 243 -----~~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.....+.+|.+ .|++++.+-||.+|++|+.||.+.|||+.+.++++++
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 12455778988 9999999999999999999999999999999988765
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-26 Score=183.01 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=188.3
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEee-ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
++..|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |.. .|-+++|.. ..+.+|+.|+.|..+|++.
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~--rvg~laW~~----~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS--RVGSLAWNS----SVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc--eeEEEeccC----ceEEEecCCCcEEEEEEec
Confidence 488999999999999999999999999999999999999988 664 499999986 7899999999999999998
Q ss_pred CCCCCCCccccccceEEEEEeecccCcccee-ccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEe-cC
Q 022870 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANA-KQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA-GE 169 (291)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-g~ 169 (291)
.+.... .+..+....|.+.........+ ........+|+. ........+..|.. ++|+|-...+||+. |+
T Consensus 290 ~~~~~~---~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 290 SQHVVS---TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred chhhhh---hhhcccceeeeeEECCCCCeeccCCCccceEeccC-CCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 865442 2444555555544443332222 222334455555 22234444555655 99999998888864 45
Q ss_pred CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (291)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (291)
.|+.|++||..+++.+..+.. ...+.++. |++.. .+....-|..++.|.||+..+ .+++..+.
T Consensus 366 ~D~~i~fwn~~~g~~i~~vdt-------------gsQVcsL~-Wsk~~--kEi~sthG~s~n~i~lw~~ps-~~~~~~l~ 428 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVDT-------------GSQVCSLI-WSKKY--KELLSTHGYSENQITLWKYPS-MKLVAELL 428 (484)
T ss_pred cccEEEEEEcCCCcEeccccc-------------CCceeeEE-EcCCC--CEEEEecCCCCCcEEEEeccc-cceeeeec
Confidence 699999999999998887762 55788887 99983 232333456788999999998 88999999
Q ss_pred ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
+|...|..++++|+|..+++|+.|.++++|++-..
T Consensus 429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999998653
No 74
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.6e-27 Score=185.41 Aligned_cols=246 Identities=17% Similarity=0.240 Sum_probs=192.1
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..++.++--.-||++..|-+.-+++++|+.|..|+||+.++++.++.++.|..- |.+++.+| ...+++++|.|-+|
T Consensus 46 tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy--IR~iavHP--t~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 46 TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY--IRSIAVHP--TLPYVLTSSDDMTI 121 (794)
T ss_pred eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc--eeeeeecC--CCCeEEecCCccEE
Confidence 446677777889999999998889999999999999999999999999999955 99999999 77899999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (291)
++||.+..= .....++.+.+......+.+..........-.....+|.+.... ....+.+|.. +.|-+-|..-.
T Consensus 122 KlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 122 KLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred EEeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcce
Confidence 999998652 22335555555555555555443333444445566677665443 3334557766 77766664433
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
+++|+.|..+++||.++..|+++++ ||... +..+. |+|.-+ ++++|++||+++||+..+ .+.
T Consensus 200 lIsgaDD~tiKvWDyQtk~CV~TLe--------GHt~N----vs~v~-fhp~lp----iiisgsEDGTvriWhs~T-y~l 261 (794)
T KOG0276|consen 200 LISGADDLTIKVWDYQTKSCVQTLE--------GHTNN----VSFVF-FHPELP----IIISGSEDGTVRIWNSKT-YKL 261 (794)
T ss_pred EEecCCCceEEEeecchHHHHHHhh--------ccccc----ceEEE-ecCCCc----EEEEecCCccEEEecCcc-eeh
Confidence 4489999999999999999999999 88654 44444 999866 999999999999999988 777
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEE
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL 278 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 278 (291)
...+...-+.|++++-.+.+..++.|.++|.|.+
T Consensus 262 E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 262 EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 7778777889999999888888888887776644
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=8.8e-27 Score=187.77 Aligned_cols=250 Identities=19% Similarity=0.304 Sum_probs=188.2
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe----------------------------------
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---------------------------------- 57 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------------------------------- 57 (291)
.++.||+..|++++++.+...+++|+. +.+++|+..+.++++++.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 356799999999999999877777754 689999999888777654
Q ss_pred ------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC---CCCcccccc---ceEEEEEeecccCccce
Q 022870 58 ------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS---SNPSLTIKT---NSYHFCKLSLVKEPYAN 125 (291)
Q Consensus 58 ------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~ 125 (291)
.|.+. |++++.+| |+..+++||.|.+|++||..-.... ++..+.++. ........+...+|...
T Consensus 446 l~Eti~AHdga--IWsi~~~p--D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 446 LVETIRAHDGA--IWSISLSP--DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhccccc--eeeeeecC--CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 56644 99999999 9999999999999999997522110 000111111 11122223333333322
Q ss_pred ---eccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCC
Q 022870 126 ---AKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN 198 (291)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 198 (291)
+..-.....++.++..+... .+.+|.- +..+||+..++ +|+.|..|++|-+.-|.|-+.+- +
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFfl-sLYGHkLPV~smDIS~DSkliv--TgSADKnVKiWGLdFGDCHKS~f--------A 590 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFL-SLYGHKLPVLSMDISPDSKLIV--TGSADKNVKIWGLDFGDCHKSFF--------A 590 (888)
T ss_pred EEEEEeccCeEEEEEecceeeee-eecccccceeEEeccCCcCeEE--eccCCCceEEeccccchhhhhhh--------c
Confidence 22333445556665554333 4566655 78899987544 88999999999999999988887 6
Q ss_pred CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEE
Q 022870 199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL 278 (291)
Q Consensus 199 ~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 278 (291)
|. ..++++. |.|. .. .+.+++.|+.|+-||-.. ...++.+.+|...|++++.+|+|.+++|+|.|.+|++
T Consensus 591 Hd----DSvm~V~-F~P~---~~-~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 591 HD----DSVMSVQ-FLPK---TH-LFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred cc----CceeEEE-Eccc---ce-eEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence 74 4678888 9996 33 899999999999999988 8899999999999999999999999999999999999
Q ss_pred EEcCCCcee
Q 022870 279 YNLDHSTVS 287 (291)
Q Consensus 279 w~~~~~~~~ 287 (291)
|+.....++
T Consensus 661 wE~tde~~~ 669 (888)
T KOG0306|consen 661 WERTDEILI 669 (888)
T ss_pred eeccCccee
Confidence 998776554
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=177.44 Aligned_cols=209 Identities=22% Similarity=0.373 Sum_probs=170.4
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.+.+.+|+||...|+.+.|+|+...+++++.|-.|+||......+......|..+ |+.+..+| .|.||++++.||+
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~--V~~ls~h~--tgeYllsAs~d~~ 326 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP--VTGLSLHP--TGEYLLSASNDGT 326 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc--ceeeeecc--CCcEEEEecCCce
Confidence 4678899999999999999999999999999999999999888888888888854 99999999 9999999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
..+.|++++.... .......... +.. .+|+||| +++.+
T Consensus 327 w~Fsd~~~g~~lt--~vs~~~s~v~---~ts-----------------------------------~~fHpDg--Lifgt 364 (506)
T KOG0289|consen 327 WAFSDISSGSQLT--VVSDETSDVE---YTS-----------------------------------AAFHPDG--LIFGT 364 (506)
T ss_pred EEEEEccCCcEEE--EEeeccccce---eEE-----------------------------------eeEcCCc--eEEec
Confidence 9999999987533 1111101000 000 5599999 44558
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
|..|+.+++||+.++..+..|. +| .+.+.+++ |+.+ |+ +|+++++|+.|++||+|. .+...+
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fp--------gh----t~~vk~i~-FsEN---GY-~Lat~add~~V~lwDLRK-l~n~kt 426 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFP--------GH----TGPVKAIS-FSEN---GY-WLATAADDGSVKLWDLRK-LKNFKT 426 (506)
T ss_pred cCCCceEEEEEcCCccccccCC--------CC----CCceeEEE-eccC---ce-EEEEEecCCeEEEEEehh-hcccce
Confidence 9999999999999998888887 77 55677777 9977 66 999999999999999997 566666
Q ss_pred cccc-ccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 248 MKVH-LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 248 ~~~h-~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+... ...|.++.|++.|.+|+.++.|=.|++++
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 5532 23799999999999999998887777766
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=8.9e-27 Score=190.97 Aligned_cols=205 Identities=24% Similarity=0.394 Sum_probs=167.8
Q ss_pred EEecC-CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE-EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 12 AVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 12 ~~l~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
..+.+ |...+.+..|. +.++++++.|++|++||..++..+.. +.+|.+. |.++++.. .+++|++|+.|.+++
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~--V~~l~~~~--~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG--VWGLAFPS--GGDKLVSGSTDKTER 274 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCC--ceeEEEec--CCCEEEEEecCCcEE
Confidence 34444 67788999998 44899999999999999999998888 9999955 99999987 679999999999999
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (291)
+||..++++.. .+..+......+ +-. +. ..++|+
T Consensus 275 vWd~~sg~C~~----~l~gh~stv~~~----------------------------------------~~~-~~-~~~sgs 308 (537)
T KOG0274|consen 275 VWDCSTGECTH----SLQGHTSSVRCL----------------------------------------TID-PF-LLVSGS 308 (537)
T ss_pred eEecCCCcEEE----EecCCCceEEEE----------------------------------------Ecc-Cc-eEeecc
Confidence 99999998755 333222222211 112 22 333789
Q ss_pred CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (291)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (291)
.|.+|++|++.++.++..+. +| .+.+.++. ++-+ ++++|+.||.|++||..+ +++++.+.
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~--------~h----~~~V~~v~-~~~~------~lvsgs~d~~v~VW~~~~-~~cl~sl~ 368 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLR--------GH----TGPVNCVQ-LDEP------LLVSGSYDGTVKVWDPRT-GKCLKSLS 368 (537)
T ss_pred CCceEEEEeccCcceEEEec--------cc----cccEEEEE-ecCC------EEEEEecCceEEEEEhhh-ceeeeeec
Confidence 99999999999999999988 66 55677776 6633 999999999999999998 99999999
Q ss_pred ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC-ceeee
Q 022870 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TVSHC 289 (291)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~-~~~~~ 289 (291)
+|...|.++.+++. ..+++|+.|+.|++||+++. +++++
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 99999999999885 58999999999999999998 66654
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=173.69 Aligned_cols=245 Identities=16% Similarity=0.188 Sum_probs=179.6
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
+.++.|.||++.|+.++.......+.+++.|.+.+||.++++.|+..+.+|.+. |.+++|++ .+.++++++.|++-
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS--VNsikfh~--s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS--VNSIKFHN--SGLLLLTASGDETA 214 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc--eeeEEecc--ccceEEEccCCcch
Confidence 456778899999999999887779999999999999999999999999999966 99999999 88999999999999
Q ss_pred EEEECCCCCCCCCCcc--ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870 89 KCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (291)
.||...-.-...++.. .........+ +....+. .......+-...+.+...+.+|.. ..|-..|..
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~--sDe~~~d------~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q 286 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEH--SDEHNRD------TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ 286 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhc--ccccccc------cccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence 9997332111000000 0000000000 0000000 000001111233445556677776 456677776
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
++ +++.|.+..+||+++++.+..+. ||..+.... +-+|. .+ ++++.+.|.+.++||.+..-
T Consensus 287 ~v--TaSWDRTAnlwDVEtge~v~~Lt--------GHd~ELtHc-----stHpt---Qr-LVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 287 MV--TASWDRTANLWDVETGEVVNILT--------GHDSELTHC-----STHPT---QR-LVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred ee--eeeccccceeeeeccCceecccc--------Ccchhcccc-----ccCCc---ce-EEEEeccCceeEeccchhhc
Confidence 66 88999999999999999999998 886654332 25665 33 89999999999999999755
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
..+..|++|.+.|+++.|.-+.+ +++||+|.+|+|||+++-+
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecccc
Confidence 67889999999999999987765 8999999999999998754
No 79
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=184.79 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=142.9
Q ss_pred ecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC-CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEE
Q 022870 36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (291)
Q Consensus 36 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
|+.++.|++|+......+..+.+|... |.+++|+| + +++|++|+.||+|++||+.+...... .... . ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~--V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~-p--~~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSS--ILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVK---EIKD-P--QC 119 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCC--EEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCcccc---cccc-c--eE
Confidence 667899999998877788888888855 99999999 5 68999999999999999986432100 0000 0 00
Q ss_pred EeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (291)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~ 190 (291)
.+.+|.. ++|+|++..+++ +++.|+.|++||+++++....+.
T Consensus 120 --------------------------------~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~- 165 (568)
T PTZ00420 120 --------------------------------ILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQIN- 165 (568)
T ss_pred --------------------------------EeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEe-
Confidence 0011111 779999877666 55669999999999988766654
Q ss_pred cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE-----eecCCC
Q 022870 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS-----IDESCN 265 (291)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-----~~~~~~ 265 (291)
| ...+.++. |+|+ |. +|++++.|+.|+|||+++ ++.+..+.+|.+.+.+.. |++++.
T Consensus 166 --------~----~~~V~Sls-wspd---G~-lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 166 --------M----PKKLSSLK-WNIK---GN-LLSGTCVGKHMHIIDPRK-QEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred --------c----CCcEEEEE-ECCC---CC-EEEEEecCCEEEEEECCC-CcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 1 23577887 9998 44 899999999999999998 888889999987654433 358888
Q ss_pred eeEEecCCC----eEEEEEcCC-Cceee
Q 022870 266 GGISGGADQ----KIVLYNLDH-STVSH 288 (291)
Q Consensus 266 ~l~s~s~dg----~i~vw~~~~-~~~~~ 288 (291)
+|++++.|+ +|+|||++. ++.+.
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 999988774 799999995 44443
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.2e-26 Score=174.56 Aligned_cols=208 Identities=15% Similarity=0.243 Sum_probs=171.2
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
..++++...|....+++|+.|.++.++|...++.+..+++|... |+.+.++| +...+++++.|..|++|.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHK--DLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE--EEEEEecc--chhheeecCCcceEEeeccccccC
Confidence 56888888887779999999999999999999999999999965 99999999 888999999999999999876553
Q ss_pred CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
.. ....+..+... +..+|.|++++ +++.|++..+.|
T Consensus 296 ~~--~~~~h~~~V~~----------------------------------------ls~h~tgeYll--sAs~d~~w~Fsd 331 (506)
T KOG0289|consen 296 PT--SSRPHEEPVTG----------------------------------------LSLHPTGEYLL--SASNDGTWAFSD 331 (506)
T ss_pred cc--cccccccccee----------------------------------------eeeccCCcEEE--EecCCceEEEEE
Confidence 22 11111111111 44789999888 677799999999
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (291)
++++.++..... . .......+.. |+|| |. +|.+|..||.|+|||+.+ +..+..|.+|.++|..+
T Consensus 332 ~~~g~~lt~vs~---------~-~s~v~~ts~~-fHpD---gL-ifgtgt~d~~vkiwdlks-~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 332 ISSGSQLTVVSD---------E-TSDVEYTSAA-FHPD---GL-IFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPVKAI 395 (506)
T ss_pred ccCCcEEEEEee---------c-cccceeEEee-EcCC---ce-EEeccCCCceEEEEEcCC-ccccccCCCCCCceeEE
Confidence 999988776652 1 1223456665 9999 44 999999999999999998 77899999999999999
Q ss_pred EeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 259 SIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+|+.+|.+||++++|+.|++||++.-+..+++
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhccccee
Confidence 99999999999999999999999987766554
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=169.16 Aligned_cols=256 Identities=12% Similarity=0.143 Sum_probs=185.5
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
.+++|-.|.++|+++.|+|....|++|+.|++|+++|+.+....+.++......+|.++.|+| .|.+|+.|....+++
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~r 241 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLR 241 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCcee
Confidence 478899999999999999999999999999999999998755444444444446799999999 999999999999999
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeecccC-ccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcE
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKY 163 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 163 (291)
+||+++.++..... .-..+....+.+..... .........+...+|+--..+.+...-..|.+ ..|..+++++
T Consensus 242 lYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 242 LYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred EEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 99999987643111 11111112222221111 12334455667788888777887777777776 7789999877
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCCCcEEEEEccCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGSILVWDIRNPG 242 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~dg~i~vwd~~~~~ 242 (291)
+ +++.|..+++|.+.+++++..+... |....+.-. +... |+... . |++. --..+.+.-||.++..
T Consensus 321 L--sSG~DS~vkLWEi~t~R~l~~YtGA------g~tgrq~~r-tqAv-FNhtE---d-yVl~pDEas~slcsWdaRtad 386 (430)
T KOG0640|consen 321 L--SSGKDSTVKLWEISTGRMLKEYTGA------GTTGRQKHR-TQAV-FNHTE---D-YVLFPDEASNSLCSWDARTAD 386 (430)
T ss_pred e--ecCCcceeeeeeecCCceEEEEecC------Ccccchhhh-hhhh-hcCcc---c-eEEccccccCceeeccccchh
Confidence 6 5667999999999999999988732 111211111 1122 77652 2 4444 3446789999999844
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
+....-.+|.+.+..+.-+|.+..+++||.|-.+|+|--+
T Consensus 387 r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 387 RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 4434445899999999999999999999999999999654
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.2e-27 Score=186.71 Aligned_cols=221 Identities=19% Similarity=0.293 Sum_probs=163.6
Q ss_pred Ccccee---EEEEcC-CCCEEEEecCCCeEEEEeCCCCe------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870 17 HRASVT---DVCFHQ-TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 17 h~~~v~---~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (291)
|...|. .+..+. .+++|+|||.||.|++|++.... ...+++.|. +.|..+.... +++.|+++|.|-
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs--DWVNDiiL~~--~~~tlIS~SsDt 95 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS--DWVNDIILCG--NGKTLISASSDT 95 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH--hHHhhHHhhc--CCCceEEecCCc
Confidence 555566 566664 66789999999999999976432 366777787 5599999988 889999999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
+|++|+........ ..++..+.-.... +++-..... +++
T Consensus 96 TVK~W~~~~~~~~c--~stir~H~DYVkc--------------------------------------la~~ak~~~-lva 134 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFC--MSTIRTHKDYVKC--------------------------------------LAYIAKNNE-LVA 134 (735)
T ss_pred eEEEeecccCcchh--Hhhhhcccchhee--------------------------------------eeecccCce-eEE
Confidence 99999998764111 2233333222211 223122233 444
Q ss_pred ecCCcCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 167 AGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
+|+.|+.|.+||++++ +.+..+......... ......+++++ .++. |. .|++|+.++.|++||.++ .+.
T Consensus 135 SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~---sG~k~siYSLA-~N~t---~t-~ivsGgtek~lr~wDprt-~~k 205 (735)
T KOG0308|consen 135 SGGLDRKIFLWDINTGTATLVASFNNVTVNSLG---SGPKDSIYSLA-MNQT---GT-IIVSGGTEKDLRLWDPRT-CKK 205 (735)
T ss_pred ecCCCccEEEEEccCcchhhhhhccccccccCC---CCCccceeeee-cCCc---ce-EEEecCcccceEEecccc-ccc
Confidence 7888999999999987 333333321111111 12345678886 8887 44 899999999999999999 888
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeeeC
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCVI 291 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~~ 291 (291)
+..++||...|..+..+++|..++++|.||+|++||+...+++++++
T Consensus 206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 89999999999999999999999999999999999999999998764
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.8e-26 Score=189.81 Aligned_cols=258 Identities=16% Similarity=0.195 Sum_probs=186.3
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------------------CeEEEEEeeecCCcceEEEE
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------------HRTVSSSWVHSAAHGIVSVA 69 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~ 69 (291)
++.+.+...|.+.|+|+.|+|||++||+|+.|+.|.||+... .+++..+.+|... |..++
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~ 136 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVN 136 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceec
Confidence 367888899999999999999999999999999999999762 1367788899866 99999
Q ss_pred EeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc---cccc
Q 022870 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE---TVDT 146 (291)
Q Consensus 70 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 146 (291)
|+| ++.+|++++.|++|.+||..+.+... ++..+........+.+.+..... ..+.....+|...... .+..
T Consensus 137 Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~--vl~~H~s~VKGvs~DP~Gky~AS-qsdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 137 WSP--DDSLLVSVSLDNSVIIWNAKTFELLK--VLRGHQSLVKGVSWDPIGKYFAS-QSDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred cCC--CccEEEEecccceEEEEccccceeee--eeecccccccceEECCccCeeee-ecCCceEEEEEcccceeeEeecc
Confidence 999 99999999999999999999986644 33334444444445554443332 2334455666644422 2222
Q ss_pred cCCCCCC------cccCCCCCcEEEEecCC--cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC--
Q 022870 147 DSLCDSK------DDVPAEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS-- 216 (291)
Q Consensus 147 ~~~~~~~------~~~~~~~~~~~~~~g~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 216 (291)
.+..-.. +.|+|||.++...-+-. -..+.|.+-.+.+.-..+- ||.. .+.++. |+|.
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--------GH~~----p~evvr-FnP~lf 278 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--------GHSA----PVEVVR-FNPKLF 278 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--------cCCC----ceEEEE-eChHHh
Confidence 2221111 99999998776432221 2347777776666666666 7844 566666 9984
Q ss_pred ------CCCCc-----eEEEeecCCCcEEEEEccCCCCceeecc-ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 217 ------KSQGF-----VNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 217 ------~~~g~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
+...+ ..+|+|+.|+.|.||.... .+|+.... -....|..++|+|||..|..+|.||+|.+..++..
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccccccCCccCCCcceEEEEEecCCccEEEEecCC-CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11111 1688999999999999977 66665443 34678999999999999999999999999999876
Q ss_pred ce
Q 022870 285 TV 286 (291)
Q Consensus 285 ~~ 286 (291)
.+
T Consensus 358 El 359 (942)
T KOG0973|consen 358 EL 359 (942)
T ss_pred Hh
Confidence 54
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.8e-25 Score=153.27 Aligned_cols=216 Identities=18% Similarity=0.219 Sum_probs=160.4
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE-----EEEEeeecCCcceEEEEEee--cCCCCeEEE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-----VSSSWVHSAAHGIVSVATGP--SIGLNKVIS 81 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s 81 (291)
-..+.-+.|++.|+|.+|+|+|+++++|+.|.+|++-.++...+ -..+..|.+. |..++|.. ...+..|++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt--irdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT--IRDLAFLDDPESGGAILAS 157 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCc--eeeeEEecCCCcCceEEEe
Confidence 34455667999999999999999999999999999987654322 2346677755 99999964 223456666
Q ss_pred EeC-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC
Q 022870 82 QGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (291)
Q Consensus 82 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (291)
++. |..|++-|..+++-.. .+..+..+... -++.++
T Consensus 158 ~gagdc~iy~tdc~~g~~~~----a~sghtghila---------------------------------------lyswn~ 194 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFH----ALSGHTGHILA---------------------------------------LYSWNG 194 (350)
T ss_pred cCCCcceEEEeecCCCCcce----eecCCcccEEE---------------------------------------EEEecC
Confidence 543 5556666666554322 33333322221 134444
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC-cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK-GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
.++ ++|+.|.+|++||++-..++.++... -|... ....+.+++ ..|. |+ +|++|..|....+||++
T Consensus 195 -~m~-~sgsqdktirfwdlrv~~~v~~l~~~------~~~~glessavaav~-vdps---gr-ll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 195 -AMF-ASGSQDKTIRFWDLRVNSCVNTLDND------FHDGGLESSAVAAVA-VDPS---GR-LLASGHADSSCMLYDIR 261 (350)
T ss_pred -cEE-EccCCCceEEEEeeeccceeeeccCc------ccCCCcccceeEEEE-ECCC---cc-eeeeccCCCceEEEEee
Confidence 333 48999999999999999998887642 22221 234566665 8887 66 99999999999999999
Q ss_pred CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
. +++++.+..|...|.++.|+|...++.++|.|..|++-|++.
T Consensus 262 g-~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 262 G-GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred C-CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 7 899999999999999999999999999999999999999875
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=191.12 Aligned_cols=240 Identities=19% Similarity=0.272 Sum_probs=192.1
Q ss_pred eeEEEEcC-CCCEEEEecCCCeEEEEeCCC---CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 21 VTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 21 v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
+..+.|+. +.++|||++..|.|.+||+.. .+.+..+..|... +.++.|++. ..++|++||.||+|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs--~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS--ANKLDFHST-EPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccc--eeeeeeccC-CccEEEecCCCceEEEEeeecc
Confidence 45577876 667999999999999999987 5566678888865 999999986 4589999999999999999987
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcC
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~ 172 (291)
+... .+...........+++..........+++.+..|+++........+..|.+ +.|+|++ .++| +|+.|+
T Consensus 167 ~S~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lA-TGGRDK 242 (839)
T KOG0269|consen 167 KSKS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLA-TGGRDK 242 (839)
T ss_pred cccc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceee-ecCCCc
Confidence 6544 344455566677778877777778889999999999999999999999988 8899965 4555 677999
Q ss_pred eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec--CCCcEEEEEccCCCCceeeccc
Q 022870 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPLTAMKV 250 (291)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~ 250 (291)
.|+|||+.+++...... .....++..+. |.|..+ +.|++++ .|-.|+|||++.+.-|...+..
T Consensus 243 ~vkiWd~t~~~~~~~~t-----------InTiapv~rVk-WRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHT-----------INTIAPVGRVK-WRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred cEEEEeccCCCccceeE-----------Eeecceeeeee-eccCcc---chhhhhhccccceEEEEeeccccccceeeec
Confidence 99999998765433222 11245677787 999854 3788776 4779999999988899999999
Q ss_pred cccceeEEEe-ecCCCeeEEecCCCeEEEEEcC
Q 022870 251 HLEPVLCLSI-DESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 251 h~~~v~~~~~-~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
|...++.++| +.+...|.+++.||+|..-.++
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 9999999999 5566688999999987654433
No 86
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4e-25 Score=180.96 Aligned_cols=205 Identities=17% Similarity=0.222 Sum_probs=152.9
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE-------------EEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-------------SSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.. +|.+++|+|. ++++|++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~--~V~~v~fsP~-d~~~LaSgS 95 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG--PIIDVAFNPF-DPQKLFTAS 95 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC--CEEEEEEcCC-CCCEEEEEe
Confidence 4455677777778777888888888888886544322 13556764 4999999995 457999999
Q ss_pred CCCeEEEEECCCCCCCC---CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----ccc
Q 022870 84 RDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDV 156 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 156 (291)
.|++|++||+.+..... .++..+ .+|.. ++|
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L------------------------------------------~gH~~~V~~l~f 133 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHL------------------------------------------QGHTKKVGIVSF 133 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEe------------------------------------------cCCCCcEEEEEe
Confidence 99999999998653211 011111 12211 679
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
+|++..+++ +|+.|+.|++||+++++.+..+. +|. ..+.++. |+|+ |. +|++|+.|+.|++|
T Consensus 134 ~P~~~~iLa-Sgs~DgtVrIWDl~tg~~~~~l~--------~h~----~~V~sla-~spd---G~-lLatgs~Dg~IrIw 195 (493)
T PTZ00421 134 HPSAMNVLA-SAGADMVVNVWDVERGKAVEVIK--------CHS----DQITSLE-WNLD---GS-LLCTTSKDKKLNII 195 (493)
T ss_pred CcCCCCEEE-EEeCCCEEEEEECCCCeEEEEEc--------CCC----CceEEEE-EECC---CC-EEEEecCCCEEEEE
Confidence 998766666 56679999999999998888777 563 3577787 9998 44 89999999999999
Q ss_pred EccCCCCceeeccccccc-eeEEEeecCCCeeEEec----CCCeEEEEEcCCCc
Q 022870 237 DIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGG----ADQKIVLYNLDHST 285 (291)
Q Consensus 237 d~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s----~dg~i~vw~~~~~~ 285 (291)
|+++ ++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 196 D~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 196 DPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 9998 7888889898765 45678888877777654 47999999998654
No 87
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=4.7e-27 Score=180.30 Aligned_cols=204 Identities=19% Similarity=0.308 Sum_probs=148.2
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC-CeEEEEeCCC
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDG 86 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg 86 (291)
.++++++.||..+|.+++|+++|..+++++.|+.+++||+++|+++..+... ..++|+.|.| ++ +.+++|+.|+
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~---~~~~cvkf~p--d~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD---KVPTCVKFHP--DNQNIFLVGGSDK 322 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC---CCceeeecCC--CCCcEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999988754 4589999999 66 8999999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeee-----------------------------
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE----------------------------- 137 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 137 (291)
.|+.||+++++.+++ +.-+-.......|-.... ......+.....+|+
T Consensus 323 ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred cEEEEeccchHHHHH--HHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 999999999986541 111111111111110000 001111111112221
Q ss_pred --------------cccC--ccccccCCCCCC------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCC
Q 022870 138 --------------REVG--ETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (291)
Q Consensus 138 --------------~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~ 195 (291)
.... ......+.+|.. +.|||||++++ +|+.||.+.+||.++-+.+..++
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lk------ 471 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLK------ 471 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccc------
Confidence 1111 112234455544 89999998766 89999999999999999998888
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (291)
+| ..+|+.+. |+|..+. .+|+++-||.|++||
T Consensus 472 --ah----~~~ci~v~-wHP~e~S---kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 472 --AH----DQPCIGVD-WHPVEPS---KVATCGWDGLIKIWD 503 (503)
T ss_pred --cC----CcceEEEE-ecCCCcc---eeEecccCceeEecC
Confidence 56 56788887 9998542 799999999999996
No 88
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.95 E-value=2e-26 Score=164.36 Aligned_cols=264 Identities=26% Similarity=0.359 Sum_probs=180.5
Q ss_pred CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
+.||.|...|++|.+.|+++.|..++ +|++|..-|.|++|++.+...+..++.+.. .+|+.+.-.| + +.+.+-+.
T Consensus 1 ~~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p--~-d~l~tqgR 75 (323)
T KOG0322|consen 1 MVPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP--N-DSLDTQGR 75 (323)
T ss_pred CCCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC--C-cchhhcCC
Confidence 35678999999999999999998887 599999999999999999888877874443 5699999998 5 88999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccce---eccCC-CCce--eeecccCc---cccccCCCCCC--
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN---AKQAN-EPKD--CYEREVGE---TVDTDSLCDSK-- 153 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~--~~~~~~~~---~~~~~~~~~~~-- 153 (291)
|+.+.+|++....... +..+..+...+|.++....+... ..... +... ..+..... .......+..+
T Consensus 76 d~~L~lw~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred CceEEEEEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 9999999998765543 33344455566666655544322 00000 0000 00110000 00011111111
Q ss_pred cccC---CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC--CCCCCCCCc-------------------------
Q 022870 154 DDVP---AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--GSPNFSSKG------------------------- 203 (291)
Q Consensus 154 ~~~~---~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~--~~~~~~~~~------------------------- 203 (291)
+++. .++.++++.+|.++|.+.+||+.++..+..++..... +...|..+.
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 3333 4567788889999999999999987433322211000 000111100
Q ss_pred -----------------ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCe
Q 022870 204 -----------------RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG 266 (291)
Q Consensus 204 -----------------~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 266 (291)
+.-+..+. ..|| ++ ++|+++.|+.||||+.++ .+++..++.|.+.|++++|+|+..+
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvr-IRpD---~K-IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVR-IRPD---GK-ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eccccCcccccceEEecCCCccceE-EccC---Cc-EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCch
Confidence 01122232 4454 55 999999999999999999 9999999999999999999999999
Q ss_pred eEEecCCCeEEEEEc
Q 022870 267 GISGGADQKIVLYNL 281 (291)
Q Consensus 267 l~s~s~dg~i~vw~~ 281 (291)
+|++|.|+.|.+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 89
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=181.55 Aligned_cols=247 Identities=18% Similarity=0.344 Sum_probs=178.6
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.+..++.||+..|+++.|...|..|++||.|+.|.+||+-...-+..+++|+.. |+..-|.. +.+.+++.+.|+.|
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~--iT~~~F~~--~~~~lvS~sKDs~i 173 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDS--ITQALFLN--GDSFLVSVSKDSMI 173 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHH--HhHHhccC--CCeEEEEeccCceE
Confidence 567789999999999999999999999999999999999877778888898855 99998888 77899999999999
Q ss_pred EEEECCCCCCCCCCc---------------------------ccc-----------------------------------
Q 022870 89 KCWDIENGGLSSNPS---------------------------LTI----------------------------------- 106 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~---------------------------~~~----------------------------------- 106 (291)
++||+++..+....+ +.+
T Consensus 174 K~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 174 KFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 999998776432000 000
Q ss_pred ccceEEEEE-----------------------------------------------------------------eecccC
Q 022870 107 KTNSYHFCK-----------------------------------------------------------------LSLVKE 121 (291)
Q Consensus 107 ~~~~~~~~~-----------------------------------------------------------------~~~~~~ 121 (291)
.......|. +.+...
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence 000000000 000000
Q ss_pred cc-ceeccCCCCceeeecccCc--------cccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870 122 PY-ANAKQANEPKDCYEREVGE--------TVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (291)
Q Consensus 122 ~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~ 188 (291)
.. ...........++.+.... .....+.+|.. ++++.+. .++.+|. .+.+++|+..+.++++++
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga-~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGA-GESIKIWNRDTLKCIRTI 410 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecC-CCcEEEEEccCcceeEEe
Confidence 00 0000111222333333211 11123445555 7777765 3333565 589999999999999999
Q ss_pred cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE
Q 022870 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI 268 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 268 (291)
. .+.+.+.. |-|.+ + ++++|..+|.+.+||+.+ ...+...++|.+.|++++.+|++..++
T Consensus 411 ~--------------~~y~l~~~-Fvpgd---~-~Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdgaIWsi~~~pD~~g~v 470 (888)
T KOG0306|consen 411 T--------------CGYILASK-FVPGD---R-YIVLGTKNGELQVFDLAS-ASLVETIRAHDGAIWSISLSPDNKGFV 470 (888)
T ss_pred c--------------cccEEEEE-ecCCC---c-eEEEeccCCceEEEEeeh-hhhhhhhhccccceeeeeecCCCCceE
Confidence 8 33677776 99973 3 999999999999999998 888899999999999999999999999
Q ss_pred EecCCCeEEEEEcC
Q 022870 269 SGGADQKIVLYNLD 282 (291)
Q Consensus 269 s~s~dg~i~vw~~~ 282 (291)
+||.|.+|++||+.
T Consensus 471 T~saDktVkfWdf~ 484 (888)
T KOG0306|consen 471 TGSADKTVKFWDFK 484 (888)
T ss_pred EecCCcEEEEEeEE
Confidence 99999999999974
No 90
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.9e-26 Score=163.63 Aligned_cols=222 Identities=18% Similarity=0.286 Sum_probs=143.7
Q ss_pred cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC-CeEE-EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 15 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
...++.|.+|+||| ...+++.|+.||+||+|+++. +... +....|. .||.+++|+. ||..+++|+.|+.+++|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~--~PvL~v~Wsd--dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD--GPVLDVCWSD--DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC--CCeEEEEEcc--CCceEEeeccCCceEEE
Confidence 35678999999999 555777999999999999986 3333 2334455 5699999999 99999999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (291)
|+.+++... ...+..+...+. |-+...+-.+++|+.|
T Consensus 100 DL~S~Q~~~---v~~Hd~pvkt~~----------------------------------------wv~~~~~~cl~TGSWD 136 (347)
T KOG0647|consen 100 DLASGQVSQ---VAAHDAPVKTCH----------------------------------------WVPGMNYQCLVTGSWD 136 (347)
T ss_pred EccCCCeee---eeecccceeEEE----------------------------------------EecCCCcceeEecccc
Confidence 999986432 233333333332 2222223344489999
Q ss_pred CeEEEEeCCCcceeeEecccc--cCCCCCCCC-----------------------Ccce----eeeeEEEecCCCCCCce
Q 022870 172 SEVEIWDLNTAERCTRLHQNS--CGGSPNFSS-----------------------KGRG----MCMAVQAYLPSKSQGFV 222 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~-----------------------~~~~----~~~~~~~~~p~~~~g~~ 222 (291)
++|+.||+|+..++.++..+. ......++. .... .+.++++|. + .+
T Consensus 137 KTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d---~~- 211 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-D---KD- 211 (347)
T ss_pred cceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-c---CC-
Confidence 999999999988877765310 000000000 0000 012232121 1 11
Q ss_pred EEEeecCCCcEEEEEccCCC-Cceeecccccc---------ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 223 NVLAGYEDGSILVWDIRNPG-IPLTAMKVHLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
..+.|+-+|.+.+..+..+. +.-..++-|.. .|++|+|+|.-..|+|++.||++.+||-+....+.
T Consensus 212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence 23556666666666655411 22233444542 58899999998899999999999999988766554
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=172.08 Aligned_cols=207 Identities=18% Similarity=0.260 Sum_probs=160.8
Q ss_pred ceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.++.+.+|+.+|....|+| ++..|++|+.|+.+++||+.+......+.+|... |.|.+|+|. +++.++|||.||.|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY--VR~g~~~~~-~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY--VRCGDISPA-NDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce--eEeeccccC-CCeEEEecCCCceE
Confidence 3567889999999999999 5667899999999999999988876678888855 999999995 34789999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++||++... ..+.+++....... +.+-|.|. +++++|
T Consensus 179 rl~DtR~~~---~~v~elnhg~pVe~---------------------------------------vl~lpsgs-~iasAg 215 (487)
T KOG0310|consen 179 RLWDTRSLT---SRVVELNHGCPVES---------------------------------------VLALPSGS-LIASAG 215 (487)
T ss_pred EEEEeccCC---ceeEEecCCCceee---------------------------------------EEEcCCCC-EEEEcC
Confidence 999999764 11334443322222 33566665 455555
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
+ ..+++||+-++........ .| .-.++|+. +..+ +. .|++|+-|+.|++||+.+ .+.+..+
T Consensus 216 G--n~vkVWDl~~G~qll~~~~-------~H----~KtVTcL~-l~s~---~~-rLlS~sLD~~VKVfd~t~-~Kvv~s~ 276 (487)
T KOG0310|consen 216 G--NSVKVWDLTTGGQLLTSMF-------NH----NKTVTCLR-LASD---ST-RLLSGSLDRHVKVFDTTN-YKVVHSW 276 (487)
T ss_pred C--CeEEEEEecCCceehhhhh-------cc----cceEEEEE-eecC---Cc-eEeecccccceEEEEccc-eEEEEee
Confidence 4 7899999996654443331 34 44677776 7766 33 899999999999999877 7888888
Q ss_pred cccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
.- .++|.+++.+|++..++.|-.||.+.+=+..
T Consensus 277 ~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 277 KY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ec-ccceeeEEecCCCceEEEecccceeeeehhh
Confidence 75 7899999999999999999999988776443
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.4e-25 Score=155.60 Aligned_cols=238 Identities=12% Similarity=0.150 Sum_probs=178.5
Q ss_pred EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
..++|.+.|-.++|+| +..++++++.|.+|++||+..+++...+..... =.-+.|+| +|.+++.++.|..|...
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp--~g~~~~~~~kdD~it~i 133 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSP--DGEYIAVGNKDDRITFI 133 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcC--CCCEEEEecCcccEEEE
Confidence 4678999999999998 667899999999999999999999998876654 35788999 99999999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCC-CCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN-EPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (291)
|.++.+...... .+. ......+. ..........| +.+.+......+ ....+..|.. +.|+|+|+++.
T Consensus 134 d~r~~~~~~~~~--~~~-e~ne~~w~--~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~snCicI~f~p~GryfA-- 205 (313)
T KOG1407|consen 134 DARTYKIVNEEQ--FKF-EVNEISWN--NSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHPSNCICIEFDPDGRYFA-- 205 (313)
T ss_pred Eecccceeehhc--ccc-eeeeeeec--CCCCEEEEecCCceEEEEeccccc-cccccccCCcceEEEEECCCCceEe--
Confidence 999876544211 111 11222222 22333333333 444444443222 2334556655 89999998765
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+|+.|..+.+||+...-+++.+. .+ .-++..+. |+.+ |+ +||+|++|..|-|=++++ +..+.
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~is--------Rl----dwpVRTlS-FS~d---g~-~lASaSEDh~IDIA~vet-Gd~~~ 267 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCIS--------RL----DWPVRTLS-FSHD---GR-MLASASEDHFIDIAEVET-GDRVW 267 (313)
T ss_pred eccccceeeccChhHhhhheeec--------cc----cCceEEEE-eccC---cc-eeeccCccceEEeEeccc-CCeEE
Confidence 78889999999999988888887 44 33456666 9987 66 999999999999999999 78788
Q ss_pred eccccccceeEEEeecCCCeeEEecCC---------CeEEEEEcC
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGAD---------QKIVLYNLD 282 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~d---------g~i~vw~~~ 282 (291)
.++ +.++-.+++|+|...+||-+++| |.+++|-+.
T Consensus 268 eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 268 EIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred Eee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 876 68899999999999999876654 567776544
No 93
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=167.24 Aligned_cols=212 Identities=15% Similarity=0.266 Sum_probs=158.5
Q ss_pred ceEEecCCccceeEEEEcCCC--CEEEEecCCCeEEEEeCCC----------------CeEEEEEeeecCCcceEEEEEe
Q 022870 10 PVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVATG 71 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~~ 71 (291)
.....-+|.+.++.+.-++-+ .+.++=+..|.|.|||+.. .+++.++.+|... -+.+.|+
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E--Gy~LdWS 220 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE--GYGLDWS 220 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc--ceeeecc
Confidence 334455688888888887744 5667778899999999753 2457778888855 8999999
Q ss_pred ecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCC
Q 022870 72 PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (291)
Q Consensus 72 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (291)
|. ....|++|..-+.|++|...++..... ...+.+|
T Consensus 221 p~-~~g~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------------------~~Pf~gH 256 (440)
T KOG0302|consen 221 PI-KTGRLLSGDCVKGIHLWEPSTGSWKVD-------------------------------------------QRPFTGH 256 (440)
T ss_pred cc-cccccccCccccceEeeeeccCceeec-------------------------------------------Ccccccc
Confidence 95 336788998889999999988654221 0112222
Q ss_pred CC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee
Q 022870 152 SK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG 227 (291)
Q Consensus 152 ~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g 227 (291)
.. ++|+|....+|++ ++-||+|+|||+|.+.....+... +| .+-+..+. |+-..+ +|++|
T Consensus 257 ~~SVEDLqWSptE~~vfaS-cS~DgsIrIWDiRs~~~~~~~~~k------Ah----~sDVNVIS-Wnr~~~----lLasG 320 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFAS-CSCDGSIRIWDIRSGPKKAAVSTK------AH----NSDVNVIS-WNRREP----LLASG 320 (440)
T ss_pred ccchhhhccCCccCceEEe-eecCceEEEEEecCCCccceeEee------cc----CCceeeEE-ccCCcc----eeeec
Confidence 22 7899999988884 556999999999998432222111 45 33555565 987643 89999
Q ss_pred cCCCcEEEEEccC--CCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870 228 YEDGSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 228 ~~dg~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~ 283 (291)
+.||+++|||+|+ .+++++.++.|..+|++|.|+|. ...|+++|.|.+|.+||+.-
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999999985 25789999999999999999874 34678888999999999864
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5e-26 Score=160.57 Aligned_cols=217 Identities=14% Similarity=0.167 Sum_probs=162.6
Q ss_pred EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
.-..|++.|..+...-.|..|||++.|++|+|+.+++. +.+.++.+|.++ |+.++|....-|.+|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP--Vwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP--VWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC--eeEEeecccccCcEeeEeecCceEE
Confidence 34579999999988888999999999999999998753 577889999955 9999997544679999999999999
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (291)
||.-++++..+......+...... ++|.|.+--+++++++
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNs----------------------------------------V~wapheygl~Lacas 123 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNS----------------------------------------VAWAPHEYGLLLACAS 123 (299)
T ss_pred EEecCCCchhhhhhhhhhccccee----------------------------------------ecccccccceEEEEee
Confidence 999988854331122222211111 5577877777777888
Q ss_pred CcCeEEEEeCCCc-c-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC----------ceEEEeecCCCcEEEEE
Q 022870 170 QLSEVEIWDLNTA-E-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG----------FVNVLAGYEDGSILVWD 237 (291)
Q Consensus 170 ~d~~i~~wd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g----------~~~l~~g~~dg~i~vwd 237 (291)
.||.|.+.+.+.. . ....+.. .|. --+.++. |.|....| -..|++|+.|..|+||+
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~-------aH~----~GvnsVs-wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVF-------AHE----IGVNSVS-WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhh-------ccc----cccceee-ecCcCCCccccccCcccccceeeccCCccceeeee
Confidence 9999999998765 2 1222221 453 3455665 88763322 12699999999999999
Q ss_pred ccCCC-CceeeccccccceeEEEeecCC----CeeEEecCCCeEEEEEcCC
Q 022870 238 IRNPG-IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 238 ~~~~~-~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~dg~i~vw~~~~ 283 (291)
..+.. .....|.+|.+.|..++|.|.- .++|++|.||++.||..+.
T Consensus 192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 98732 2334589999999999998753 4689999999999998763
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7.6e-25 Score=167.35 Aligned_cols=246 Identities=16% Similarity=0.233 Sum_probs=178.8
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE-E-----------------eeecCCcceEEEEEee
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-----------------WVHSAAHGIVSVATGP 72 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~-----------------~~~~~~~~v~~~~~~~ 72 (291)
+..+..|.-+|.+++++|++.+.++++.||+|.-|++.+++.... + +.|. ..+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEEEcC
Confidence 677888999999999999999999999999999999988764311 1 1344 4499999999
Q ss_pred cCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (291)
Q Consensus 73 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
|+.+|++|+.|..|.||+.++.+.+. .+..+........|.-. ..............+|.++....+. .+.+|+
T Consensus 213 --Dgkylatgg~d~~v~Iw~~~t~ehv~--~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~ve-tlyGHq 286 (479)
T KOG0299|consen 213 --DGKYLATGGRDRHVQIWDCDTLEHVK--VFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVE-TLYGHQ 286 (479)
T ss_pred --CCcEEEecCCCceEEEecCcccchhh--cccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHH-HHhCCc
Confidence 99999999999999999999987654 33333333333333221 1223344555667777776655444 455666
Q ss_pred C--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC
Q 022870 153 K--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (291)
Q Consensus 153 ~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d 230 (291)
. +.++.-...-+++.|..|+++++|++..... ..+. ++ .+.+-+++ |-.+ . .+++|+.|
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr--------g~----~~sidcv~-~In~----~-HfvsGSdn 347 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR--------GG----EGSIDCVA-FIND----E-HFVSGSDN 347 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEeccccce-eeee--------CC----CCCeeeEE-Eecc----c-ceeeccCC
Confidence 6 5555555555666888899999999954433 2333 34 33444454 5543 1 79999999
Q ss_pred CcEEEEEccCCCCceeecc-cc-----------ccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 231 GSILVWDIRNPGIPLTAMK-VH-----------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~-~h-----------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
|.|.+|++.. .+|+.+.+ +| ..+|++++.-|...++++||.+|.|++|.++.+
T Consensus 348 G~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 348 GSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ceEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999999987 77766543 22 228999999999999999999999999999987
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4e-26 Score=176.80 Aligned_cols=206 Identities=17% Similarity=0.253 Sum_probs=151.3
Q ss_pred EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEE-EEEee---ecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV-SSSWV---HSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.-+||...++|.+|+| +...++|++.||++||||+++.+.. ..++. ....-++++++|+| ++..|++|+.||+
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGS 340 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGS 340 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCc
Confidence 4579999999999999 4568899999999999999875432 22221 12224689999999 9999999999999
Q ss_pred EEEEECCCCCCCCCCccccccc-e---EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 88 VKCWDIENGGLSSNPSLTIKTN-S---YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
|.+|+...... .+.+.+... . ...+ ++|+++|++|
T Consensus 341 IQ~W~~~~~~v--~p~~~vk~AH~~g~~Its---------------------------------------i~FS~dg~~L 379 (641)
T KOG0772|consen 341 IQIWDKGSRTV--RPVMKVKDAHLPGQDITS---------------------------------------ISFSYDGNYL 379 (641)
T ss_pred eeeeecCCccc--ccceEeeeccCCCCceeE---------------------------------------EEeccccchh
Confidence 99999854322 112111110 0 0001 6799999887
Q ss_pred EEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC------CCcEEEE
Q 022870 164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVW 236 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------dg~i~vw 236 (291)
+ +-+.|+++++||+++.+ ++.... +.... -.-+.+ +|+|+. + +|++|+. .|.+.+|
T Consensus 380 l--SRg~D~tLKvWDLrq~kkpL~~~t--------gL~t~--~~~tdc-~FSPd~---k-li~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 380 L--SRGFDDTLKVWDLRQFKKPLNVRT--------GLPTP--FPGTDC-CFSPDD---K-LILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred h--hccCCCceeeeeccccccchhhhc--------CCCcc--CCCCcc-ccCCCc---e-EEEecccccCCCCCceEEEE
Confidence 7 67779999999999865 343333 22111 112233 499984 3 8888863 5789999
Q ss_pred EccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
|..+ ...++.+......|..+.|+|.-+.|..|+.||.+++|
T Consensus 443 d~~t-~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 443 DRMT-LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eccc-eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 9998 77888887778899999999999999999999999986
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-26 Score=183.05 Aligned_cols=220 Identities=21% Similarity=0.333 Sum_probs=173.4
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEE-eecCCCCeEEEEeCCC
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVAT-GPSIGLNKVISQGRDG 86 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~s~~~dg 86 (291)
.+.+++.|.+.|+.+....+++.|++++.|-+|++|+...+ -+..++..|..- |.|+++ .+ +..++++||.|+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DY--Vkcla~~ak--~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDY--VKCLAYIAK--NNELVASGGLDR 140 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccch--heeeeeccc--CceeEEecCCCc
Confidence 47789999999999999999999999999999999999877 577788889855 999999 55 667899999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
.|.+||++++.... +........... ..+....+|. ++.++.| .++ +
T Consensus 141 ~IflWDin~~~~~l--~~s~n~~t~~sl-------------~sG~k~siYS----------------LA~N~t~-t~i-v 187 (735)
T KOG0308|consen 141 KIFLWDINTGTATL--VASFNNVTVNSL-------------GSGPKDSIYS----------------LAMNQTG-TII-V 187 (735)
T ss_pred cEEEEEccCcchhh--hhhccccccccC-------------CCCCccceee----------------eecCCcc-eEE-E
Confidence 99999999873210 101111000000 0011111111 5566776 333 4
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+|+..+.+++||.++.+.+..+. ||....+. +. .+++ |. .+++++.||+|++||+.. .+++.
T Consensus 188 sGgtek~lr~wDprt~~kimkLr--------GHTdNVr~----ll-~~dD---Gt-~~ls~sSDgtIrlWdLgq-QrCl~ 249 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLR--------GHTDNVRV----LL-VNDD---GT-RLLSASSDGTIRLWDLGQ-QRCLA 249 (735)
T ss_pred ecCcccceEEeccccccceeeee--------ccccceEE----EE-EcCC---CC-eEeecCCCceEEeeeccc-cceee
Confidence 78889999999999999999998 89765444 33 7776 55 899999999999999998 89999
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
++..|...|+++..+|+-..+.+|+.||.|..=|+++.
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999999885
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.9e-25 Score=167.94 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=177.6
Q ss_pred cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
++|.+.|.+++.++||++||+|+.|..|.||+..+.+.++.+.+|.+. |.+++|-. ..+.|++++.|++|++|+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc--eeeeeeec--CccceeeeecCCceEEEehh
Confidence 489999999999999999999999999999999999999999999966 99999998 77899999999999999999
Q ss_pred CCCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecC
Q 022870 95 NGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (291)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 169 (291)
....+. ++..++.....+.... ..+..+........+|.+....... +.++.. ++|-.+. +++ +|+
T Consensus 275 ~~s~ve----tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--frg~~~sidcv~~In~~-Hfv--sGS 345 (479)
T KOG0299|consen 275 QLSYVE----TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--FRGGEGSIDCVAFINDE-HFV--SGS 345 (479)
T ss_pred HhHHHH----HHhCCccceeeechhcccceEEeccccceeEEEeccccceee--eeCCCCCeeeEEEeccc-cee--ecc
Confidence 876543 4444444333333322 2233344455666777773332222 223322 6666554 444 799
Q ss_pred CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC---Ccee
Q 022870 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---IPLT 246 (291)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~---~~~~ 246 (291)
.||.|.+|++...+++.+................+.++++++ ..|... ++++|+.+|.|++|-+..+. .++.
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sd----L~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSD----LLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCc----eEEecCCCCceEEEEecCCccccceee
Confidence 999999999999999888775211100000011123788887 777633 99999999999999998753 4455
Q ss_pred eccccccceeEEEeecCCCeeE-EecCCCeEEEEEc
Q 022870 247 AMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNL 281 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~ 281 (291)
.+. -.+.|++++|+++|+.++ ..+....+--|-.
T Consensus 421 ~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 421 SLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 555 478999999999999554 4455555555543
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-24 Score=153.67 Aligned_cols=232 Identities=20% Similarity=0.242 Sum_probs=162.5
Q ss_pred CCceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
.+++.+|.||+++|..++|.. .|.+||+++.||.|.||.-++++ .......|... |.+++|.|..-|-.|++++
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S--VNsV~wapheygl~Lacas 123 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS--VNSVAWAPHEYGLLLACAS 123 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc--ceeecccccccceEEEEee
Confidence 378899999999999999976 89999999999999999987774 34445567744 9999999976667899999
Q ss_pred CCCeEEEEECCCC-CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC-C
Q 022870 84 RDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG-P 161 (291)
Q Consensus 84 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 161 (291)
.||.|.+.+.+.. ......+...+........+.+...+... +.-.|.. .
T Consensus 124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~----------------------------~~~~~~~~~ 175 (299)
T KOG1332|consen 124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL----------------------------VDQGPAAKV 175 (299)
T ss_pred CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc----------------------------cccCccccc
Confidence 9999999998866 22221122222222222222222111000 0011111 1
Q ss_pred cEEEEecCCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 162 KYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
+-|+ +|+.|..|+||+..+.+ ...++. +|. ..+..++ |.|...-.+.+|+++++||++.||-.+
T Consensus 176 krlv-SgGcDn~VkiW~~~~~~w~~e~~l~--------~H~----dwVRDVA-waP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 176 KRLV-SGGCDNLVKIWKFDSDSWKLERTLE--------GHK----DWVRDVA-WAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ceee-ccCCccceeeeecCCcchhhhhhhh--------hcc----hhhhhhh-hccccCCCceeeEEecCCCcEEEEEec
Confidence 2344 66679999999998763 223344 664 4566665 999865566699999999999999887
Q ss_pred CCCCc--eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 240 NPGIP--LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 240 ~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
....+ ...+......++.+.|+..|+.|+.++.|+.|.+|.-+.
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 42222 223444567899999999999999999999999998664
No 100
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.3e-25 Score=159.70 Aligned_cols=258 Identities=14% Similarity=0.125 Sum_probs=176.2
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
.|.+...+|+. .. ..|+.|++.|.+||.|+.||.|.|||+.+...-+.+.+|..+ |.+++|++ +|+.|+|+|.|
T Consensus 13 ~PEel~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p--i~sl~WS~--dgr~LltsS~D 86 (405)
T KOG1273|consen 13 YPEELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP--ITSLCWSR--DGRKLLTSSRD 86 (405)
T ss_pred ChHhhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc--eeEEEecC--CCCEeeeecCC
Confidence 45566677773 33 799999999999999999999999999999888888999855 99999999 99999999999
Q ss_pred CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--ccccCCCCCC-----cccCC
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VDTDSLCDSK-----DDVPA 158 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~ 158 (291)
..|.+||+..+....+.. + ..+...+.+.+.......+...........+.+... ....-.+... ..|.+
T Consensus 87 ~si~lwDl~~gs~l~rir--f-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIR--F-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeEEE--c-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC
Confidence 999999999987654211 1 122333334444333333333333333333332111 1111111111 34888
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
.|++++ +|...|.+.+||..+.+++..++. .. ...+-.+. |+-. |+ +|+.-+.|..||.|++
T Consensus 164 ~g~yIi--tGtsKGkllv~~a~t~e~vas~ri--------ts---~~~IK~I~-~s~~---g~-~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 164 RGKYII--TGTSKGKLLVYDAETLECVASFRI--------TS---VQAIKQII-VSRK---GR-FLIINTSDRVIRTYEI 225 (405)
T ss_pred CCCEEE--EecCcceEEEEecchheeeeeeee--------ch---heeeeEEE-Eecc---Cc-EEEEecCCceEEEEeh
Confidence 898877 677789999999999999988873 11 12233333 5544 55 9999999999999998
Q ss_pred cCCC------C--ceeeccc--cccceeEEEeecCCCeeEEecC-CCeEEEEEcCCCceeeee
Q 022870 239 RNPG------I--PLTAMKV--HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 239 ~~~~------~--~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~~~~~~~~ 290 (291)
+... . +.+.++. ....=.+++|+.+|.|+++++. ...++||+-..|.+++.+
T Consensus 226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 7311 1 1222221 1223356788999999987774 467999999999888754
No 101
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-24 Score=158.42 Aligned_cols=258 Identities=16% Similarity=0.185 Sum_probs=169.2
Q ss_pred cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
.+|.+-|+++.|.+.|+.+|+|+.|++|+|||.++ -.+....+.|.+. |..+.|.+..=|+.+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S--i~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS--IWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc--EEEEEecCccccceEEEEecCCceee
Confidence 47999999999999999999999999999999654 3567778889866 99999987656789999999999999
Q ss_pred EECCCCCCCC-----CCcccc--ccceEEEEEeecccCccce-eccCCCCceeeeccc-Cccccc----c------CC--
Q 022870 91 WDIENGGLSS-----NPSLTI--KTNSYHFCKLSLVKEPYAN-AKQANEPKDCYEREV-GETVDT----D------SL-- 149 (291)
Q Consensus 91 wd~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~----~------~~-- 149 (291)
|.-....... ....++ .........|.+....... .....+.+++|..-. ...... . .+
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9753221111 001112 2223333444444433322 333444555553321 111110 1 11
Q ss_pred CCCC---cccCCCC--CcEEEEecCCc-----CeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCC
Q 022870 150 CDSK---DDVPAEG--PKYMAVAGEQL-----SEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218 (291)
Q Consensus 150 ~~~~---~~~~~~~--~~~~~~~g~~d-----~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 218 (291)
.++. +.|+|.. +.+++ .|+.+ +.++||....+. ....... +.+| ..++.+++ |.|+..
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iA-vgs~e~a~~~~~~~Iye~~e~~rKw~kva~-----L~d~----~dpI~di~-wAPn~G 236 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIA-VGSDEDAPHLNKVKIYEYNENGRKWLKVAE-----LPDH----TDPIRDIS-WAPNIG 236 (361)
T ss_pred ccCcceEEeeccccccCceEE-EEcccCCccccceEEEEecCCcceeeeehh-----cCCC----CCcceeee-eccccC
Confidence 1222 6666532 33455 45533 368888765433 2222210 1144 55777887 999865
Q ss_pred CCceEEEeecCCCcEEEEEccCCC-------------------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870 219 QGFVNVLAGYEDGSILVWDIRNPG-------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 219 ~g~~~l~~g~~dg~i~vwd~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
...+.||+++.|| |+||.++... +.+..+.+|.+.|+.+.|+-.|..|++.|.||+||+|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 5556899999999 9999998311 1345677899999999999999999999999999999
Q ss_pred EcCCCce
Q 022870 280 NLDHSTV 286 (291)
Q Consensus 280 ~~~~~~~ 286 (291)
..+-..+
T Consensus 316 kany~n~ 322 (361)
T KOG2445|consen 316 KANYNNL 322 (361)
T ss_pred hhhhhhh
Confidence 8764443
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.7e-25 Score=178.77 Aligned_cols=249 Identities=16% Similarity=0.167 Sum_probs=181.9
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCCCeEEEEECC
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 94 (291)
+.+-.+++++.+|+|++||+|..-|+++||++.+-+....++.|..+ |.|+.|+... ...+|++++.|.-|.+||+.
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE--ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE--ILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce--eEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 45678999999999999999999999999999988888889999966 9999998521 23578899999999999997
Q ss_pred CCCCCCCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCccccccCC------CCCC---cccCCCCCcE
Q 022870 95 NGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL------CDSK---DDVPAEGPKY 163 (291)
Q Consensus 95 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~ 163 (291)
..-.. +.++..+ ......|...................++......--..+. ++.. ++..|..+++
T Consensus 535 rny~l---~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 535 RNYDL---VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cccch---hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 65322 2234333 3333333332222211111112222222221111011111 1111 7888888765
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
+ +++.|+.|+|||+.+++..+.|+. -.. ..+....+. ..|. |. ||++.+.|.++.++|..+ ++
T Consensus 612 ~--t~cQDrnirif~i~sgKq~k~FKg--------s~~-~eG~lIKv~-lDPS---gi-Y~atScsdktl~~~Df~s-gE 674 (1080)
T KOG1408|consen 612 V--TVCQDRNIRIFDIESGKQVKSFKG--------SRD-HEGDLIKVI-LDPS---GI-YLATSCSDKTLCFVDFVS-GE 674 (1080)
T ss_pred E--EEecccceEEEeccccceeeeecc--------ccc-CCCceEEEE-ECCC---cc-EEEEeecCCceEEEEecc-ch
Confidence 5 677899999999999999999983 222 245566676 8887 44 999999999999999999 99
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
++..+.||...|+++.|.+|.+.|++.+.||.|.||.+.....
T Consensus 675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred hhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 9999999999999999999999999999999999999876443
No 103
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.5e-25 Score=159.43 Aligned_cols=241 Identities=17% Similarity=0.259 Sum_probs=168.2
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
+....|.++|.+++|+.||..+++|+.|+.+++||+.+++ +..+..|.. +|.++.|.+......|+|||.|++|+.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~--pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDA--PVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeeccc--ceeEEEEecCCCcceeEecccccceeec
Confidence 3455699999999999999999999999999999999985 456778884 4999999982222388999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEE
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAV 166 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 166 (291)
|.+....+. ++.-.....+ .....+...+......+.++.++.............. ++...+.+..+
T Consensus 143 D~R~~~pv~----t~~LPeRvYa--~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-- 214 (347)
T KOG0647|consen 143 DTRSSNPVA----TLQLPERVYA--ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-- 214 (347)
T ss_pred ccCCCCeee----eeeccceeee--hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE--
Confidence 999765433 2222211111 1222344555566667777777655433322222222 66666666554
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
-|+-+|.+.+..+..+.+...|...|...... ....--.+.+++ |+|.. | .|++++.||...+||-.. ...+.
T Consensus 215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~~~~VYaVNsi~-FhP~h--g--tlvTaGsDGtf~FWDkda-r~kLk 287 (347)
T KOG0647|consen 215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-VNDDVYAVNSIA-FHPVH--G--TLVTAGSDGTFSFWDKDA-RTKLK 287 (347)
T ss_pred eeeecceEEEEecCCCCccCceeEEEeccCCC-CCCceEEecceE-eeccc--c--eEEEecCCceEEEecchh-hhhhh
Confidence 47778999999998874444444333221111 111123455676 99974 3 799999999999999887 78888
Q ss_pred eccccccceeEEEeecCCCeeEEe
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISG 270 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~ 270 (291)
....|..+|++.+|+.+|.++|-+
T Consensus 288 ~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 288 TSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccCcCCCccceeEecCCCCEEEEE
Confidence 888899999999999999988643
No 104
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.5e-25 Score=159.50 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=138.1
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
..+.|..+.|+|....|+.++.||++++||+........++ |. .|+.+++|.+ + ..+++|+.||.|+.+|+.++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~--~plL~c~F~d--~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HG--APLLDCAFAD--E-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cC--CceeeeeccC--C-ceEEEeccCceEEEEEecCC
Confidence 47889999999988889889999999999998876655554 55 5599999998 5 89999999999999999988
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 176 (291)
.... .........+ +.+++....++ +|+.|++|++
T Consensus 86 ~~~~----igth~~~i~c---------------------------------------i~~~~~~~~vI--sgsWD~~ik~ 120 (323)
T KOG1036|consen 86 NEDQ----IGTHDEGIRC---------------------------------------IEYSYEVGCVI--SGSWDKTIKF 120 (323)
T ss_pred ccee----eccCCCceEE---------------------------------------EEeeccCCeEE--EcccCccEEE
Confidence 6432 1111222222 22333333333 5667777777
Q ss_pred EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc------------
Q 022870 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP------------ 244 (291)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~------------ 244 (291)
||.+.......+.. ...+.++. .. |. .|++|+.|..|.+||+++...+
T Consensus 121 wD~R~~~~~~~~d~-------------~kkVy~~~-v~-----g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 121 WDPRNKVVVGTFDQ-------------GKKVYCMD-VS-----GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred Eecccccccccccc-------------CceEEEEe-cc-----CC-EEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 77766444333331 12344333 32 22 6666666667777776653221
Q ss_pred -----------------------------------eeecccccc---------ceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 245 -----------------------------------LTAMKVHLE---------PVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 245 -----------------------------------~~~~~~h~~---------~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
-..|+.|.. +|++|+|+|-...||||+.||.|.+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 122334432 899999999888899999999999999
Q ss_pred cCCCceeee
Q 022870 281 LDHSTVSHC 289 (291)
Q Consensus 281 ~~~~~~~~~ 289 (291)
+...+-+..
T Consensus 261 ~~~rKrl~q 269 (323)
T KOG1036|consen 261 LFNRKRLKQ 269 (323)
T ss_pred Ccchhhhhh
Confidence 998876654
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.6e-23 Score=164.75 Aligned_cols=261 Identities=11% Similarity=0.064 Sum_probs=168.4
Q ss_pred CCceEEecCCccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-EeCC
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRD 85 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d 85 (291)
.+++..+.+|.. +.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..++|+| +++.+++ ++.|
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~--~g~~l~~~~~~~ 94 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---PELFALHP--NGKILYIANEDD 94 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---ccEEEECC--CCCEEEEEcCCC
Confidence 456777776544 6789999999876 5678899999999999888777665432 56789999 8887765 4568
Q ss_pred CeEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCc
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPK 162 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 162 (291)
+.|++||+++.+... .+.. .......+++.................++.............+.. ++|+|++..
T Consensus 95 ~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 95 NLVTVIDIETRKVLA----EIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE 170 (300)
T ss_pred CeEEEEECCCCeEEe----EeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence 999999998765432 1211 111222333322222111112222334455443332221112222 789999987
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
+++ ++..++.|++||+++++.+..+..... ..+. .......+. |+|+ ++..+++.+.++.|.+||+++ +
T Consensus 171 l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~---~~~~--~~~~~~~i~-~s~d---g~~~~~~~~~~~~i~v~d~~~-~ 239 (300)
T TIGR03866 171 LWV-SSEIGGTVSVIDVATRKVIKKITFEIP---GVHP--EAVQPVGIK-LTKD---GKTAFVALGPANRVAVVDAKT-Y 239 (300)
T ss_pred EEE-EcCCCCEEEEEEcCcceeeeeeeeccc---cccc--ccCCccceE-ECCC---CCEEEEEcCCCCeEEEEECCC-C
Confidence 655 555689999999999887766542100 0010 111233455 8988 442345555677899999987 6
Q ss_pred CceeeccccccceeEEEeecCCCeeEEe-cCCCeEEEEEcCCCceeeee
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~~~~~~~~ 290 (291)
+.+..+. +...+.+++|+|++.+|+++ +.+|.|++||+++++.+..+
T Consensus 240 ~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 240 EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 6655443 45578999999999999876 46899999999999987664
No 106
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=167.13 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=149.9
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
+..+++.||..+|..+.||||.++|++++.|..+++||+.+|.+...+... ....+.+++|.| ||..+++|+.|+++
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~p--Dg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCP--DGFRFVTGSPDRTI 336 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cCCCcceeEEcc--CCceeEecCCCCcE
Confidence 457899999999999999999999999999999999999999988877543 224599999999 99999999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEe---------------------------------------ecccCcc-ceecc
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKL---------------------------------------SLVKEPY-ANAKQ 128 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~-~~~~~ 128 (291)
..||++...... -.-.........++ ++..... .....
T Consensus 337 ~~wdlDgn~~~~--W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 337 IMWDLDGNILGN--WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EEecCCcchhhc--ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc
Confidence 999987653211 00000000111111 1111111 11222
Q ss_pred CCCCceeeecccCccccccCCCCCC------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC
Q 022870 129 ANEPKDCYEREVGETVDTDSLCDSK------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK 202 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 202 (291)
.......|++. .+.......+|.. -+|-.....+++ +|++|+.|+||+..+++++..+. ||.
T Consensus 415 ~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia-SGSED~kvyIWhr~sgkll~~Ls--------GHs-- 482 (519)
T KOG0293|consen 415 QDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA-SGSEDSKVYIWHRISGKLLAVLS--------GHS-- 482 (519)
T ss_pred ccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEE-ecCCCceEEEEEccCCceeEeec--------CCc--
Confidence 33455667777 3344445555544 456555545554 89999999999999999999999 885
Q ss_pred cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
..+.+++ |+|..+ ..+|+|++||+|+||-...
T Consensus 483 --~~vNcVs-wNP~~p---~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 483 --KTVNCVS-WNPADP---EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred --ceeeEEe-cCCCCH---HHhhccCCCCeEEEecCCc
Confidence 4677776 999843 2899999999999998764
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=159.91 Aligned_cols=214 Identities=18% Similarity=0.337 Sum_probs=168.4
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEe------CCCC------------------------------
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD------TVQH------------------------------ 50 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd------~~~~------------------------------ 50 (291)
.++++.++.||.+.|++++|++.+.++++++.|++-.||. +.+.
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 4578999999999999999999999999999999999997 2110
Q ss_pred ----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcccee
Q 022870 51 ----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126 (291)
Q Consensus 51 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (291)
-++..+.+|.. .|.++.|.. .|.++++++.|.+-.+||+++++.+. .++.+.....-
T Consensus 259 ~tiRvPl~~ltgH~~--vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtge~v~--~LtGHd~ELtH------------- 319 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHRA--VVSACDWLA--GGQQMVTASWDRTANLWDVETGEVVN--ILTGHDSELTH------------- 319 (481)
T ss_pred ceeeeeeeeeecccc--ceEehhhhc--CcceeeeeeccccceeeeeccCceec--cccCcchhccc-------------
Confidence 02445667774 499999999 89999999999999999999998755 33333222222
Q ss_pred ccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcce
Q 022870 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRG 205 (291)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 205 (291)
.+-+|..+ + +++.+.|.+.++||.+.. ..+..|+ ||.+
T Consensus 320 ---------------------------cstHptQr-L-VvTsSrDtTFRLWDFReaI~sV~VFQ--------GHtd---- 358 (481)
T KOG0300|consen 320 ---------------------------CSTHPTQR-L-VVTSSRDTTFRLWDFREAIQSVAVFQ--------GHTD---- 358 (481)
T ss_pred ---------------------------cccCCcce-E-EEEeccCceeEeccchhhcceeeeec--------cccc----
Confidence 22455543 3 347888999999999843 2345566 7744
Q ss_pred eeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
.++++. |..+. .+++|+.|.+|+|||+++...++.+++. ..+++.++.+..+..++.--++..|++||++..+
T Consensus 359 tVTS~v-F~~dd-----~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 359 TVTSVV-FNTDD-----RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ceeEEE-EecCC-----ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 566666 88762 6999999999999999998999999986 6789999999988888888888999999999876
Q ss_pred ee
Q 022870 286 VS 287 (291)
Q Consensus 286 ~~ 287 (291)
+.
T Consensus 432 la 433 (481)
T KOG0300|consen 432 LA 433 (481)
T ss_pred cc
Confidence 54
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.4e-26 Score=183.01 Aligned_cols=210 Identities=19% Similarity=0.328 Sum_probs=176.6
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
+.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+ |.++.|++ +..+|++|+.+|+|++|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hesp--IeSl~f~~--~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESP--IESLTFDT--SERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCc--ceeeecCc--chhhhcccccCCceeee
Confidence 455678999999998668889999999999999999988888889999855 99999999 87899999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (291)
|++..+..+ ++..+...... +.|+|.+.+. ++|+.|
T Consensus 98 DleeAk~vr----tLtgh~~~~~s--------------------------------------v~f~P~~~~~--a~gStd 133 (825)
T KOG0267|consen 98 DLEEAKIVR----TLTGHLLNITS--------------------------------------VDFHPYGEFF--ASGSTD 133 (825)
T ss_pred ehhhhhhhh----hhhccccCcce--------------------------------------eeeccceEEe--cccccc
Confidence 999887544 22222211111 5599998765 389999
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (291)
..+++||++..-+...+. +|. ..+-.+. |+|+ |+ +++.|++|..++|||+.. ++.+..|..|
T Consensus 134 td~~iwD~Rk~Gc~~~~~--------s~~----~vv~~l~-lsP~---Gr-~v~~g~ed~tvki~d~~a-gk~~~ef~~~ 195 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYK--------SHT----RVVDVLR-LSPD---GR-WVASGGEDNTVKIWDLTA-GKLSKEFKSH 195 (825)
T ss_pred ccceehhhhccCceeeec--------CCc----ceeEEEe-ecCC---Cc-eeeccCCcceeeeecccc-cccccccccc
Confidence 999999999888998888 553 3344454 9998 55 999999999999999998 9999999999
Q ss_pred ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
++.+..+.|+|..-++++||.|+++++||+++..++
T Consensus 196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI 231 (825)
T ss_pred cccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence 999999999999999999999999999999977665
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.6e-24 Score=172.15 Aligned_cols=204 Identities=18% Similarity=0.338 Sum_probs=158.7
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
....|+.+|+||+..|.|++...++. +++||.|.++++|.. +++...+++|... |++++..| + +.++|||.|
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as--VWAv~~l~--e-~~~vTgsaD 160 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS--VWAVASLP--E-NTYVTGSAD 160 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh--eeeeeecC--C-CcEEeccCc
Confidence 45678999999999999999888886 999999999999985 5667778999855 99999999 6 599999999
Q ss_pred CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (291)
.+|++|.-.+ ..+ ++..+...... +++-+++ .++
T Consensus 161 KtIklWk~~~--~l~----tf~gHtD~VRg--------------------------------------L~vl~~~-~fl- 194 (745)
T KOG0301|consen 161 KTIKLWKGGT--LLK----TFSGHTDCVRG--------------------------------------LAVLDDS-HFL- 194 (745)
T ss_pred ceeeeccCCc--hhh----hhccchhheee--------------------------------------eEEecCC-CeE-
Confidence 9999999743 222 22222111110 3344554 344
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
+++.||.|++|++ +++++..+. +| +..++++. ..++ +. .++++++|++++||+.. .+.
T Consensus 195 -ScsNDg~Ir~w~~-~ge~l~~~~--------gh----tn~vYsis-~~~~---~~-~Ivs~gEDrtlriW~~~---e~~ 252 (745)
T KOG0301|consen 195 -SCSNDGSIRLWDL-DGEVLLEMH--------GH----TNFVYSIS-MALS---DG-LIVSTGEDRTLRIWKKD---ECV 252 (745)
T ss_pred -eecCCceEEEEec-cCceeeeee--------cc----ceEEEEEE-ecCC---CC-eEEEecCCceEEEeecC---ceE
Confidence 6777999999999 678888887 77 56788877 5554 22 89999999999999976 566
Q ss_pred eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
+.+.-....|+++.+-++|. +++|++||.||||..+..+.
T Consensus 253 q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 253 QVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 77765566899999988887 78888999999999875543
No 110
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-24 Score=169.13 Aligned_cols=252 Identities=18% Similarity=0.229 Sum_probs=172.5
Q ss_pred CCCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 4 ~~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
+|.|..+...++||++.|+|+...|.|.+|++|+.||+|+||.+.++.|++++... +.|.|++|+|..+ ..+++++
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~-~~vLAvA 461 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSD-LCVLAVA 461 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCC-ceeEEEE
Confidence 57888889999999999999999999999999999999999999999999998765 3499999999433 2333444
Q ss_pred CCCeEEEEECCCCCCCC-----CCcccc---cc---------------ceEEEEEe----------ecccCc--cceecc
Q 022870 84 RDGTVKCWDIENGGLSS-----NPSLTI---KT---------------NSYHFCKL----------SLVKEP--YANAKQ 128 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~-----~~~~~~---~~---------------~~~~~~~~----------~~~~~~--~~~~~~ 128 (291)
....+.+-+..-+..+. ++.... .. .....+.. ...... ...+..
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 44446666654331111 000000 00 00000000 011111 111111
Q ss_pred CCC--CceeeecccCccccccC---CCCCC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCC
Q 022870 129 ANE--PKDCYEREVGETVDTDS---LCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK 202 (291)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 202 (291)
.++ .+.+..+...... ..+ .++.. +.|+|...++++++ ...|++||+..++.+.++..
T Consensus 542 ~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~t------------ 605 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLT------------ 605 (733)
T ss_pred CCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhc------------
Confidence 111 1122222222211 122 12222 88999999988754 36899999999887777763
Q ss_pred cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
....+..++ .+|. |. .|+.|+.|+.+..+|+.-..++.+.++.|...|++++|++.-.++++|+.||++.|+.
T Consensus 606 g~kwiS~ms-ihp~---GD-nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 606 GSKWISSMS-IHPN---GD-NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCeeeeeee-ecCC---CC-eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 133566666 8887 44 7999999999999999876789999999999999999999999999999999999985
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1e-23 Score=168.72 Aligned_cols=244 Identities=17% Similarity=0.282 Sum_probs=183.8
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE--EEeeecCCcceEE-EEEeecCCCCeEEEEeCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVS-VATGPSIGLNKVISQGRD 85 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~d 85 (291)
+.-+.+.||...|..+++.+.. .+++++.||++++|+-...+.+. .+..|.+- |.. ++|.+ .++.++++|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~--i~~~i~y~e-~~~~~l~~g~~D 80 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGF--IANSICYAE-SDKGRLVVGGMD 80 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcce--eeccceecc-ccCcceEeeccc
Confidence 5678899999999999987655 89999999999999965554433 35555533 555 77776 266789999999
Q ss_pred CeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCC
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGP 161 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 161 (291)
.++.+|...+. .|...++.+....|..+...........-.....+| ........+.+|+. ++.-|++
T Consensus 81 ~~i~v~~~~~~----~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW---~~~~l~~~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 81 TTIIVFKLSQA----EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVW---RIGELVYSLQGHTASVWAVASLPEN- 152 (745)
T ss_pred ceEEEEecCCC----CchhhhhccccceeeeecCCcCceEecccccceEEe---cchhhhcccCCcchheeeeeecCCC-
Confidence 99999999887 456688888888887776655442222222333333 33334444788877 5556666
Q ss_pred cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
.++ +|+.|.+|++|.- ++.+++|. +|.+ .+..++ +-|+. .+++++.||.|++|++.
T Consensus 153 ~~v--TgsaDKtIklWk~--~~~l~tf~--------gHtD----~VRgL~-vl~~~-----~flScsNDg~Ir~w~~~-- 208 (745)
T KOG0301|consen 153 TYV--TGSADKTIKLWKG--GTLLKTFS--------GHTD----CVRGLA-VLDDS-----HFLSCSNDGSIRLWDLD-- 208 (745)
T ss_pred cEE--eccCcceeeeccC--Cchhhhhc--------cchh----heeeeE-EecCC-----CeEeecCCceEEEEecc--
Confidence 333 8899999999986 66788888 8855 444554 76652 59999999999999995
Q ss_pred CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+..+.++.+|..-|.++....++..++|+++|++++||+.. .+.++|
T Consensus 209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 88999999999999999987777789999999999999987 454443
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.5e-24 Score=161.20 Aligned_cols=245 Identities=16% Similarity=0.238 Sum_probs=184.9
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.+..++++|.+.|+.|++.. ..+++++.|.+|+.|-++- ..++++.+. ..++.+.-+. .++.++|+|+ .|
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~---s~~~gIdh~~--~~~~FaTcGe--~i 169 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK---SVYLGIDHHR--KNSVFATCGE--QI 169 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc---cccccccccc--ccccccccCc--ee
Confidence 56789999999999999987 5789999999999999764 466666544 3377777776 6688999887 49
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAV 166 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 166 (291)
.|||......+. .++........+.+.+................+++++...........-.. ++|+|.+- .+ +
T Consensus 170 ~IWD~~R~~Pv~--smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeaf-nF-~ 245 (433)
T KOG0268|consen 170 DIWDEQRDNPVS--SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAF-NF-V 245 (433)
T ss_pred eecccccCCccc--eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcccc-ce-e
Confidence 999998765544 345555666777777777666666667778888888877765554433322 99999543 33 3
Q ss_pred ecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
+|++|..++.||++..+. +.... +| ...++++. |+|. |+ .+++|+.|.+|+||..+. +..-
T Consensus 246 ~a~ED~nlY~~DmR~l~~p~~v~~--------dh----vsAV~dVd-fspt---G~-EfvsgsyDksIRIf~~~~-~~SR 307 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRNLSRPLNVHK--------DH----VSAVMDVD-FSPT---GQ-EFVSGSYDKSIRIFPVNH-GHSR 307 (433)
T ss_pred eccccccceehhhhhhcccchhhc--------cc----ceeEEEec-cCCC---cc-hhccccccceEEEeecCC-Ccch
Confidence 788899999999997654 33333 44 55788898 9999 55 899999999999999986 3322
Q ss_pred eecc-ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 246 TAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 246 ~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
..+. .-...|.++.|+-|.++++|||+|+.|++|.....+
T Consensus 308 diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 308 DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 2211 123579999999999999999999999999876544
No 113
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=159.93 Aligned_cols=244 Identities=14% Similarity=0.185 Sum_probs=189.3
Q ss_pred EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
.|--|.++|.|++|+.|...||+|+.||.|++|.+++|.|++.+. .|. ..|+|+.|+. |+..+++++.|.++++.
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt--kGvt~l~FSr--D~SqiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHT--KGVTCLSFSR--DNSQILSASFDQTVRIH 333 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhc--cCeeEEEEcc--CcchhhcccccceEEEe
Confidence 455688999999999999999999999999999999999999987 676 5599999999 99999999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEE
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAV 166 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 166 (291)
-+..+++.. .+..+........+...+..... ....+...+|+...........+...+ +-.-|.++.-+++
T Consensus 334 GlKSGK~LK--EfrGHsSyvn~a~ft~dG~~iis-aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 334 GLKSGKCLK--EFRGHSSYVNEATFTDDGHHIIS-ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred ccccchhHH--HhcCccccccceEEcCCCCeEEE-ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence 999998865 33444444444555555444333 344566778887777665554443333 3344555555554
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+. ..+++.+-++. ++.++.+.. |... ....+ +.. .+|. |+ ++.+.++|+.++-|...+ +....
T Consensus 411 CN-rsntv~imn~q-GQvVrsfsS-------GkRE-gGdFi-~~~-lSpk---Ge-wiYcigED~vlYCF~~~s-G~LE~ 473 (508)
T KOG0275|consen 411 CN-RSNTVYIMNMQ-GQVVRSFSS-------GKRE-GGDFI-NAI-LSPK---GE-WIYCIGEDGVLYCFSVLS-GKLER 473 (508)
T ss_pred Ec-CCCeEEEEecc-ceEEeeecc-------CCcc-CCceE-EEE-ecCC---Cc-EEEEEccCcEEEEEEeec-Cceee
Confidence 44 46889999885 677888874 3222 22333 333 8887 55 999999999999999998 89999
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
.+..|+..|.+++.+|..+.||+-+.||.+++|.
T Consensus 474 tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999995
No 114
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.1e-25 Score=180.67 Aligned_cols=200 Identities=22% Similarity=0.369 Sum_probs=166.0
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.++..|.+|+.+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|... +.++.|+| -+.++++|+.|+.+
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~--~~sv~f~P--~~~~~a~gStdtd~ 136 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN--ITSVDFHP--YGEFFASGSTDTDL 136 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccC--cceeeecc--ceEEeccccccccc
Confidence 446679999999999999999999999999999999999999999999999955 99999999 78899999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++||++...+.. ....+...... ++|+|+|+... .|
T Consensus 137 ~iwD~Rk~Gc~~----~~~s~~~vv~~--------------------------------------l~lsP~Gr~v~--~g 172 (825)
T KOG0267|consen 137 KIWDIRKKGCSH----TYKSHTRVVDV--------------------------------------LRLSPDGRWVA--SG 172 (825)
T ss_pred eehhhhccCcee----eecCCcceeEE--------------------------------------EeecCCCceee--cc
Confidence 999999765533 22222211111 56999997544 67
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
..|..+++||...++....|+ +| .+.+.++. |+|..- .+++|+.|+.|++||+++ ...+...
T Consensus 173 ~ed~tvki~d~~agk~~~ef~--------~~----e~~v~sle-~hp~e~----Lla~Gs~d~tv~f~dlet-fe~I~s~ 234 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFK--------SH----EGKVQSLE-FHPLEV----LLAPGSSDRTVRFWDLET-FEVISSG 234 (825)
T ss_pred CCcceeeeecccccccccccc--------cc----cccccccc-cCchhh----hhccCCCCceeeeeccce-eEEeecc
Confidence 779999999999999999988 56 44566666 998733 889999999999999998 7777777
Q ss_pred cccccceeEEEeecCCCeeEEecCCC
Q 022870 249 KVHLEPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (291)
+.....|.+.+|++++..+.+|..+.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCccCCceeeeecCCceeeecCchhh
Confidence 77788999999999999888886553
No 115
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=159.20 Aligned_cols=258 Identities=18% Similarity=0.246 Sum_probs=180.8
Q ss_pred eEEecCCccceeEEEEcCCC--CEEEEecCCCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 11 VAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
...++-|.++|++++|+|.. +++|+|..-|+|-+||+.+. .-+..+..|. .+|.++.|+|. +...+++.|.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs--~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS--GPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCC--ccccceEecCC-Chhheeeecc
Confidence 34566789999999999943 58899999999999999522 2344556666 55999999996 4479999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCc-cceeccCCCCceeeecccCccccccCCCCCC----cccCCC
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEP-YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAE 159 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 159 (291)
||+|++-|+++..... ++.........+.+.+.... .......-+...+++.+........+.-|.. ++++|.
T Consensus 256 DGtiR~~D~~~~i~e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred CceeeeeeecchhhHH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 9999999999875432 44444333333333332222 2222233335677777776655555554544 999999
Q ss_pred CCcEEEEecCCcCeEEEEeCCCcceeeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 160 GPKYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
.+++++ +++.|++.+|||+|....... + -+..+++..+.+.. |+|++ | .|++.+.|..|+|||.
T Consensus 334 ~p~~la-T~s~D~T~kIWD~R~l~~K~sp~---------lst~~HrrsV~sAy-FSPs~--g--tl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 334 CPWFLA-TASLDQTAKIWDLRQLRGKASPF---------LSTLPHRRSVNSAY-FSPSG--G--TLLTTCQDNEIRVFDS 398 (498)
T ss_pred Cchhee-ecccCcceeeeehhhhcCCCCcc---------eecccccceeeeeE-EcCCC--C--ceEeeccCCceEEeec
Confidence 999888 567799999999997543332 1 11222355666665 99994 3 5999999999999998
Q ss_pred c---CCCCceeecccccc------ceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 239 R---NPGIPLTAMKVHLE------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 239 ~---~~~~~~~~~~~h~~------~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
. ....+...+. |.. ......|+|+..++++|-.-..|-|+|-+.++.+..
T Consensus 399 s~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 399 SCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred ccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 4 2134444443 322 234568999999999999999999999999986654
No 116
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=3.8e-24 Score=151.76 Aligned_cols=245 Identities=15% Similarity=0.146 Sum_probs=192.2
Q ss_pred EEecCCccceeEEEEcC---CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 12 AVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.+..||+.+|-.++|+| +|-+|++++.||.-.+-+=++|.-+.++.+|++. |++...+. +..+.++++.|=+-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~--na~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNK--NATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCc--hhhhhhhhcccchh
Confidence 35689999999999997 8888999999999999998999999999999977 99999988 76788899999999
Q ss_pred EEEECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcE
Q 022870 89 KCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKY 163 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 163 (291)
++||.-++..+. .+ +.+-...+.|+-..... .........++++++........+.+|.. +.|......+
T Consensus 84 kvw~a~tgdelh----sf~hkhivk~~af~~ds~~l-ltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 84 KVWDAVTGDELH----SFEHKHIVKAVAFSQDSNYL-LTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred hhhhhhhhhhhh----hhhhhheeeeEEecccchhh-hccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence 999998886543 22 22333444444332221 11222234566777877777888888877 6777776665
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
+ ++..|++||+||.+++..++++.. +..+.++. ++++ |+ +++-...+.|.+||..+ ..
T Consensus 159 L--SSadd~tVRLWD~rTgt~v~sL~~-------------~s~VtSlE-vs~d---G~--ilTia~gssV~Fwdaks-f~ 216 (334)
T KOG0278|consen 159 L--SSADDKTVRLWDHRTGTEVQSLEF-------------NSPVTSLE-VSQD---GR--ILTIAYGSSVKFWDAKS-FG 216 (334)
T ss_pred E--eeccCCceEEEEeccCcEEEEEec-------------CCCCccee-eccC---CC--EEEEecCceeEEecccc-cc
Confidence 5 446799999999999999999883 44567776 8887 53 56666678899999998 77
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
+++.++. ...|.+...+|+...+++|+.|..++.||+.++.-+-
T Consensus 217 ~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 217 LLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred ceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceee
Confidence 7777775 5678999999999999999999999999999987653
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.4e-22 Score=139.12 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=159.1
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------C--------eE-EEEEeeecCCcceEEEEEeecCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H--------RT-VSSSWVHSAAHGIVSVATGPSIG 75 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~--------~~-~~~~~~~~~~~~v~~~~~~~~~~ 75 (291)
+.+|+ .+..|++++|+|.|.+.+.|+...+++|-.... + .. .+.-+.|. ..|+|.+|+| +
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~--~ 100 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSP--C 100 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccC--ccEEEEEecC--c
Confidence 44444 567899999999999999999999999875432 1 01 11123345 4599999999 9
Q ss_pred CCeEEEEeCCCeEEEEECCCCCCCC---CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC
Q 022870 76 LNKVISQGRDGTVKCWDIENGGLSS---NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (291)
Q Consensus 76 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
|.++++|+.|++|++.-++...+.. ...+.++........|
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f------------------------------------ 144 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF------------------------------------ 144 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE------------------------------------
Confidence 9999999999999998776554321 0111111111111111
Q ss_pred CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870 153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (291)
Q Consensus 153 ~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (291)
+.=...+..++++.|..|..|++-|...++..+.+. +| .+-+.++-.|+.. .+++|++|.+
T Consensus 145 -ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------gh----tghilalyswn~~------m~~sgsqdkt 205 (350)
T KOG0641|consen 145 -LDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GH----TGHILALYSWNGA------MFASGSQDKT 205 (350)
T ss_pred -ecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CC----cccEEEEEEecCc------EEEccCCCce
Confidence 001234557888888888899999999999998888 77 4456665456643 9999999999
Q ss_pred EEEEEccCCCCceeeccc--c-----ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 233 ILVWDIRNPGIPLTAMKV--H-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 233 i~vwd~~~~~~~~~~~~~--h-----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
|++||++- ..++..+.. | +..|.+++.+|.|++|++|-.|....+||++.++.++.+
T Consensus 206 irfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f 269 (350)
T KOG0641|consen 206 IRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF 269 (350)
T ss_pred EEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence 99999997 666666542 2 357999999999999999999999999999999988754
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=160.59 Aligned_cols=209 Identities=16% Similarity=0.232 Sum_probs=155.0
Q ss_pred ecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 14 l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
-.+|++.|..|+|+. ..+.||+||.|.+|++||+.++++..++..|..+ |.++.|+|. ....|++|+.|++|.+.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~--Vq~l~wh~~-~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK--VQTLEWHPY-EPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc--eeEEEecCC-CceEEEeccccceEEeee
Confidence 347999999999998 4568999999999999999999999999988755 999999996 558999999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (291)
.+...... ...+....... ++|.|.....++ ++..||
T Consensus 316 ~R~~~~s~---~~wk~~g~VEk---------------------------------------v~w~~~se~~f~-~~tddG 352 (463)
T KOG0270|consen 316 CRDPSNSG---KEWKFDGEVEK---------------------------------------VAWDPHSENSFF-VSTDDG 352 (463)
T ss_pred ccCccccC---ceEEeccceEE---------------------------------------EEecCCCceeEE-EecCCc
Confidence 99632211 11111110000 558888777666 567799
Q ss_pred eEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870 173 EVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (291)
Q Consensus 173 ~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (291)
+|+-+|+|+. +++.+++ +|..++.+. . +++..+ + ++++++.|+.|++|++.. ..+- ....|
T Consensus 353 ~v~~~D~R~~~~~vwt~~--------AHd~~ISgl----~-~n~~~p-~--~l~t~s~d~~Vklw~~~~-~~~~-~v~~~ 414 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLK--------AHDDEISGL----S-VNIQTP-G--LLSTASTDKVVKLWKFDV-DSPK-SVKEH 414 (463)
T ss_pred eEEeeecCCCCCceeEEE--------eccCCcceE----E-ecCCCC-c--ceeeccccceEEEEeecC-CCCc-ccccc
Confidence 9999999986 7888888 786655444 3 555432 2 899999999999999975 3321 11222
Q ss_pred ---ccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCce
Q 022870 252 ---LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 252 ---~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~~ 286 (291)
-+...|.++.|+-. .++.|+..+.++|||+-+..-
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 23466667777644 467888888999999977643
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=153.22 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=144.3
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCe-EEEEeCCCe
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGT 87 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~ 87 (291)
+.+|+||.+.|++++|+.||++|+|++.|++|++|++.+... .+.++..-..+.-+.+.|.| |-.- +++.-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence 457899999999999999999999999999999999876321 11111111112368999999 6554 445555668
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
+++|.+...+--. .+.+... .....+...... .+++ +... ++..+++ +
T Consensus 157 l~vyk~~K~~dG~---~~~~~v~--~D~~~f~~kh~v---------~~i~----------------iGiA-~~~k~im-s 204 (420)
T KOG2096|consen 157 LCVYKLVKKTDGS---GSHHFVH--IDNLEFERKHQV---------DIIN----------------IGIA-GNAKYIM-S 204 (420)
T ss_pred EEEEEeeecccCC---CCccccc--ccccccchhccc---------ceEE----------------Eeec-CCceEEE-E
Confidence 9999876443211 0111000 000000000000 0000 1112 2233344 6
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc---CC---
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR---NP--- 241 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~---~~--- 241 (291)
++.|..|.+||++ ++.+..+.. ... -...++.+|+ |+ ++++++-.-.|+||..- .+
T Consensus 205 as~dt~i~lw~lk-Gq~L~~idt--------nq~-----~n~~aavSP~---GR-Fia~~gFTpDVkVwE~~f~kdG~fq 266 (420)
T KOG2096|consen 205 ASLDTKICLWDLK-GQLLQSIDT--------NQS-----SNYDAAVSPD---GR-FIAVSGFTPDVKVWEPIFTKDGTFQ 266 (420)
T ss_pred ecCCCcEEEEecC-Cceeeeecc--------ccc-----cccceeeCCC---Cc-EEEEecCCCCceEEEEEeccCcchh
Confidence 7779999999999 788777763 111 1112258998 66 99999999999999863 10
Q ss_pred -CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 242 -GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 242 -~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
-..+.++++|...|..++|+++...+++.|.||++++||++
T Consensus 267 ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 267 EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 13467789999999999999999999999999999999986
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.3e-22 Score=160.66 Aligned_cols=247 Identities=18% Similarity=0.276 Sum_probs=177.4
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
..+|.+|||+.+.+.||.+-.||.|.+|++..+ -+...+.++.. ..|.+++|++ +.+|++.+.+|.|.-||+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d-rsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED-RSIESLAWAE---GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCC-CceeeEEEcc---CCeEEeecCCceEEEEecccC
Confidence 578999999998889999999999999999865 33445555544 6799999997 488999999999999999988
Q ss_pred CCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCC-C----cccCCCCCcEEEEecCC
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDS-K----DDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~g~~ 170 (291)
+... ............+........+.. ..+....+...+...........+ . ++|+|++..++ +|+.
T Consensus 101 k~~~----~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~--~Gs~ 174 (691)
T KOG2048|consen 101 KQKY----NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA--GGSI 174 (691)
T ss_pred ceeE----EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--eccc
Confidence 6533 333332222222222222211111 223333334444443322222222 2 88999997666 7999
Q ss_pred cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (291)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (291)
||.|++||..+++.+......- .+-.......++++. |-.+ + .|++|...|.|.+||... +..++.+..
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~----d~l~k~~~~iVWSv~-~Lrd---~--tI~sgDS~G~V~FWd~~~-gTLiqS~~~ 243 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQL----DRLSKREPTIVWSVL-FLRD---S--TIASGDSAGTVTFWDSIF-GTLIQSHSC 243 (691)
T ss_pred CceEEEEEcCCCceEEEeeecc----cccccCCceEEEEEE-Eeec---C--cEEEecCCceEEEEcccC-cchhhhhhh
Confidence 9999999999988766322100 022222466788888 6544 2 799999999999999998 999999999
Q ss_pred cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
|.+.|.+++.++++.++++++.|+.|..+...+++
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 99999999999999999999999999999887663
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=6.4e-23 Score=162.87 Aligned_cols=253 Identities=16% Similarity=0.256 Sum_probs=177.1
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE--EeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
++....|...|..+.|-|-...|++++.|.++++||+++++++.. +.+|... |.+++|.|. +...|++|+.||.|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S--vkS~cf~~~-n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS--VKSECFMPT-NPAVFCTGGRDGEI 169 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc--cchhhhccC-CCcceeeccCCCcE
Confidence 345567999999999999667899999999999999999888776 7788866 999999995 45789999999999
Q ss_pred EEEECCCCCCCC----------------CCccc---------cccceEEE---EEeecccCccceeccCCCCceeeeccc
Q 022870 89 KCWDIENGGLSS----------------NPSLT---------IKTNSYHF---CKLSLVKEPYANAKQANEPKDCYEREV 140 (291)
Q Consensus 89 ~iwd~~~~~~~~----------------~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
.|||++...... .+... ........ ..+..+......+....+...+||++.
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 999987544111 00000 00111111 111222223333444566788899876
Q ss_pred Cccccc-------cCCCCCC-------cccCCCCCcEEEEecCCcCeEEEEeCCCcc--eeeEecccccCCCCCCCCCcc
Q 022870 141 GETVDT-------DSLCDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGR 204 (291)
Q Consensus 141 ~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 204 (291)
...... .+..+.. +.....|.+++|. + .|+.|++|++.+.. ++..+. ++.. ..
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As-C-tD~sIy~ynm~s~s~sP~~~~s--------g~~~-~s 318 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS-C-TDNSIYFYNMRSLSISPVAEFS--------GKLN-SS 318 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE-e-cCCcEEEEeccccCcCchhhcc--------Cccc-ce
Confidence 543322 1222211 5666778888864 3 38999999998754 233333 2211 11
Q ss_pred eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcC
Q 022870 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
-.+ .- ..+|+ +. ++++|+.|...++|.+.+...+...+.+|.-.|++++| ++.+. ++++++|..+++|++.
T Consensus 319 f~v-ks-~lSpd---~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 319 FYV-KS-ELSPD---DC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATCSDDFRVKIWRLS 391 (720)
T ss_pred eee-ee-ecCCC---Cc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceeeccCcceEEEecc
Confidence 112 12 36777 44 99999999999999999988899999999999999999 44555 6777999999999996
Q ss_pred CC
Q 022870 283 HS 284 (291)
Q Consensus 283 ~~ 284 (291)
.+
T Consensus 392 ~~ 393 (720)
T KOG0321|consen 392 NG 393 (720)
T ss_pred Cc
Confidence 54
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.1e-22 Score=146.83 Aligned_cols=233 Identities=16% Similarity=0.155 Sum_probs=165.9
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
-|..++.+++|.++ ..+++|+.||.|+.+|+++++... +..|. .+|.|+.+++ ..+.+++||.|++|++||.+.
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~--~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHD--EGIRCIEYSY--EVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCC--CceEEEEeec--cCCeEEEcccCccEEEEeccc
Confidence 38999999999885 479999999999999999876554 44566 5599999998 778999999999999999997
Q ss_pred CCCCCCCccccccceEEEEEeeccc-CccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEEecC
Q 022870 96 GGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGE 169 (291)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~ 169 (291)
..... ...... ..++... .....+........+|+++........-...-. +++-|.+.-++ +++
T Consensus 126 ~~~~~----~~d~~k---kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~--~sS 196 (323)
T KOG1036|consen 126 KVVVG----TFDQGK---KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYV--VSS 196 (323)
T ss_pred ccccc----ccccCc---eEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceE--EEe
Confidence 43322 222222 1222222 223334466677888888877655432222222 78888776666 567
Q ss_pred CcCeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 170 QLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 170 ~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
-||.|.+=.+... +....|+ |..... .....--++.+++ |+|-.. .|+||+.||.|.+||+.+ .+.+
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFk--CHr~~~-~~~~~~yPVNai~-Fhp~~~----tfaTgGsDG~V~~Wd~~~-rKrl 267 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFK--CHRLSE-KDTEIIYPVNAIA-FHPIHG----TFATGGSDGIVNIWDLFN-RKRL 267 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEE--eeeccc-CCceEEEEeceeE-eccccc----eEEecCCCceEEEccCcc-hhhh
Confidence 7899988777655 2233343 111111 1112334677787 999732 799999999999999998 8888
Q ss_pred eeccccccceeEEEeecCCCeeEEecC
Q 022870 246 TAMKVHLEPVLCLSIDESCNGGISGGA 272 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~ 272 (291)
..+......|.+++|+.+|..||.++.
T Consensus 268 ~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 268 KQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhccCCCCceEEEEeccCCCeEEEEec
Confidence 888887888999999999999998875
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=170.41 Aligned_cols=209 Identities=17% Similarity=0.293 Sum_probs=154.1
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCCC----eEEEEEeeecC-CcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
....++..+++-..++.++. ..++|+.++.. ++...+..... ...+..+.|.. .+.++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~-~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ-LYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc-chhhhheeecCCCcEEEEec
Confidence 44567777788878887776 46888877643 22222221110 02256677874 36689999999999999999
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 173 (291)
...... ..+..+..+...... +.|++..+++++ +|+.||.
T Consensus 118 nk~~rn-k~l~~f~EH~Rs~~~--------------------------------------ldfh~tep~ili-SGSQDg~ 157 (839)
T KOG0269|consen 118 NKSIRN-KLLTVFNEHERSANK--------------------------------------LDFHSTEPNILI-SGSQDGT 157 (839)
T ss_pred Cccccc-hhhhHhhhhccceee--------------------------------------eeeccCCccEEE-ecCCCce
Confidence 873110 111122222222111 558888888777 7999999
Q ss_pred EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (291)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (291)
|++||++..+...++. +. ...+..++ |+|.. +. +++++.+.|.+++||+|.+.++...+.+|.+
T Consensus 158 vK~~DlR~~~S~~t~~--------~n----SESiRDV~-fsp~~--~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFR--------SN----SESIRDVK-FSPGY--GN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred EEEEeeeccccccccc--------cc----chhhhcee-eccCC--Cc-eEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence 9999999988887777 33 23455666 99973 33 8999999999999999998999999999999
Q ss_pred ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
+|.++.|+|++.+|||||.|+.|+|||+.+++
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 99999999999999999999999999998654
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=148.21 Aligned_cols=226 Identities=16% Similarity=0.233 Sum_probs=153.9
Q ss_pred CceEEecCCccceeEEEEcCCCC--EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg 86 (291)
..+..+-.|.+.|+++.|.+... .|++|+.||.|.+|+.....++.+++.|.+. |+.++.+| .+.+.++.+.|+
T Consensus 74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D~ 149 (362)
T KOG0294|consen 74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGDQ 149 (362)
T ss_pred hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCCc
Confidence 34566778999999999999665 8999999999999999999999999999976 99999999 888888999999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
.+++||+-.++.-. +..+...... ..+. .....++......+.+|.++.-............++..+.....++
T Consensus 150 ~lr~WNLV~Gr~a~--v~~L~~~at~-v~w~--~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~- 223 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAF--VLNLKNKATL-VSWS--PQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELL- 223 (362)
T ss_pred eeeeehhhcCccce--eeccCCccee-eEEc--CCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEE-
Confidence 99999998887533 3333332222 2222 2333333444444555555444332221111111333333333344
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC----
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG---- 242 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~---- 242 (291)
+|..|+.|++||..+..+...+. +|..+..+... .-+|+ +. +|++++.||.|+|||++...
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~~---~~~~~---~~-~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIAS---YTNPE---HE-YLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred EecCCceEEEeccCCCccceeee--------cchhheeeeEE---EecCC---ce-EEEEeccCceEEEEEccccccCCc
Confidence 46668999999999988888888 88776665532 12333 44 99999999999999998621
Q ss_pred CceeeccccccceeEEEe
Q 022870 243 IPLTAMKVHLEPVLCLSI 260 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~ 260 (291)
.++..+.- ...++|+..
T Consensus 289 ~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 289 TLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ceeEEeec-CCccceeee
Confidence 23333332 455666654
No 125
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.7e-22 Score=169.30 Aligned_cols=221 Identities=17% Similarity=0.196 Sum_probs=159.2
Q ss_pred CCccceeEEEEcCCCCEEEEec--CCCeEEEEeCCC------------CeEEEEEeeecCCcceEEEEEeecCCCCeEEE
Q 022870 16 GHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (291)
.+...|.+++.+|+|..++||+ .||.++||+.+. .+.+.++..|.+. |.|+.|+| ||.+||+
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~s--v~CVR~S~--dG~~lAs 86 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGS--VNCVRFSP--DGSYLAS 86 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCc--eeEEEECC--CCCeEee
Confidence 3466799999999999999999 899999998642 2334556667755 99999999 9999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (291)
Q Consensus 82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 157 (291)
|++|+.|.+|+..... ....+......... +. ......+.+|.. ++|+
T Consensus 87 GSDD~~v~iW~~~~~~--~~~~fgs~g~~~~v-------------------------E~-wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIG--SGTVFGSTGGAKNV-------------------------ES-WKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred ccCcceEEEeeecccC--Cccccccccccccc-------------------------ce-eeEEEEEecCCCccceeccC
Confidence 9999999999987511 00011000000000 00 011112333444 8899
Q ss_pred CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (291)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (291)
|++..++ +++.|++|.+||.++.+.+..+. +|..... .+. |.|- |+ ||++-+.|++|+||.
T Consensus 139 p~~~~lv--S~s~DnsViiwn~~tF~~~~vl~--------~H~s~VK----Gvs-~DP~---Gk-y~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 139 PDDSLLV--SVSLDNSVIIWNAKTFELLKVLR--------GHQSLVK----GVS-WDPI---GK-YFASQSDDRTLKVWR 199 (942)
T ss_pred CCccEEE--EecccceEEEEccccceeeeeee--------ccccccc----ceE-ECCc---cC-eeeeecCCceEEEEE
Confidence 9886443 78889999999999999999998 7855444 444 9998 55 999999999999999
Q ss_pred ccCCCC---------------------------------------------------ceeeccccccceeEEEeec----
Q 022870 238 IRNPGI---------------------------------------------------PLTAMKVHLEPVLCLSIDE---- 262 (291)
Q Consensus 238 ~~~~~~---------------------------------------------------~~~~~~~h~~~v~~~~~~~---- 262 (291)
..+.+. .-..|-||.+++..+.|+|
T Consensus 200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 654110 0223568999999999966
Q ss_pred --CC-----------CeeEEecCCCeEEEEEcCCCcee
Q 022870 263 --SC-----------NGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 263 --~~-----------~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
.. ..+|+||.|++|-||.....+.+
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 11 15789999999999998766544
No 126
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-23 Score=177.40 Aligned_cols=215 Identities=20% Similarity=0.336 Sum_probs=162.4
Q ss_pred ccceeEEEEcCCCCE----EEEecCCCeEEEEeCCC---C---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 18 RASVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---H---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~----l~s~~~dg~v~iwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
....+.|+|.+.|.. ||.|..||.|.+||... + ..+.+...|.+. |..+.|++. .+++|++|+.||.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~--V~gLDfN~~-q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP--VLGLDFNPF-QGNLLASGADDGE 140 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCc--eeeeecccc-CCceeeccCCCCc
Confidence 456789999986655 89999999999999765 2 234556677755 999999995 4469999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
|.|||+...+....+- .........+ ++|+..-.++++ +
T Consensus 141 I~iWDlnn~~tP~~~~-~~~~~~eI~~---------------------------------------lsWNrkvqhILA-S 179 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPG-SQAPPSEIKC---------------------------------------LSWNRKVSHILA-S 179 (1049)
T ss_pred EEEeccCCcCCCCCCC-CCCCcccceE---------------------------------------eccchhhhHHhh-c
Confidence 9999999865432111 0000000001 557777777777 5
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC---CcEEEEEccCCCCc
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIP 244 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d---g~i~vwd~~~~~~~ 244 (291)
++.+|.+.|||++..+++..+.. +.. +..+..+. |+|+.. . .|+++++| -.|.+||+|....+
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~--------~~~--~~~~S~l~-WhP~~a-T--ql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSD--------TPG--RMHCSVLA-WHPDHA-T--QLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred cCCCCCceeccccCCCccccccc--------CCC--ccceeeee-eCCCCc-e--eeeeecCCCCCceeEeecccccCCc
Confidence 66689999999999988877763 322 24566776 999954 2 45555544 37999999988899
Q ss_pred eeeccccccceeEEEeecCC-CeeEEecCCCeEEEEEcCCCceeeee
Q 022870 245 LTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
++.+++|...|.++.|.+.+ .+|+|++.|+.|.+|+.++++.+..+
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 99999999999999997655 88999999999999999999988764
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.9e-23 Score=160.83 Aligned_cols=243 Identities=17% Similarity=0.208 Sum_probs=185.9
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
.|.+-|.++.++...++++||+. |.|+|||+... ..+..+..-.....|.++...| ||+.|++|++-.+|.|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence 48888999999998899999986 78999998642 3455555444436699999999 999999999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCcc---ceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEE
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPY---ANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMA 165 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 165 (291)
+......- ...+......+ .....++. .+.....+.+.+|++.+... ...+.+|.+ +.++++|.++.
T Consensus 494 LAapTpri--kaeltssapaC--yALa~spDakvcFsccsdGnI~vwDLhnq~~-VrqfqGhtDGascIdis~dGtklW- 567 (705)
T KOG0639|consen 494 LAAPTPRI--KAELTSSAPAC--YALAISPDAKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISKDGTKLW- 567 (705)
T ss_pred ccCCCcch--hhhcCCcchhh--hhhhcCCccceeeeeccCCcEEEEEccccee-eecccCCCCCceeEEecCCCceee-
Confidence 98764321 11222211111 22222222 22344556778888876644 456778877 88999999988
Q ss_pred EecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 166 ~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
+|+.|.+||.||+++++.+.... ....++++. ++|. +. ++++|-+++.+.|.... +...
T Consensus 568 -TGGlDntvRcWDlregrqlqqhd-------------F~SQIfSLg-~cP~---~d-WlavGMens~vevlh~s--kp~k 626 (705)
T KOG0639|consen 568 -TGGLDNTVRCWDLREGRQLQQHD-------------FSSQIFSLG-YCPT---GD-WLAVGMENSNVEVLHTS--KPEK 626 (705)
T ss_pred -cCCCccceeehhhhhhhhhhhhh-------------hhhhheecc-cCCC---cc-ceeeecccCcEEEEecC--Cccc
Confidence 89999999999999988776554 355688887 9998 44 99999999999998877 4556
Q ss_pred eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
+.+..|+..|.++.|.+.|+++++.+.|+.+..|...-|..+.
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred eeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 7788899999999999999999999999999999987776554
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=8.8e-22 Score=160.88 Aligned_cols=261 Identities=15% Similarity=0.162 Sum_probs=180.0
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeCC
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRD 85 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~d 85 (291)
.++.+++++++...|+++.=+|--..+|.|..+|+|.+++++.++.+.+++...+ .|++++|.. ||+. +++|+..
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g--~VtslSFrt--DG~p~las~~~~ 266 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG--RVTSLSFRT--DGNPLLASGRSN 266 (910)
T ss_pred cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc--ceeEEEecc--CCCeeEEeccCC
Confidence 4578999999999999999999777999999999999999999999999985544 499999998 8775 5567777
Q ss_pred CeEEEEECCCCCCCC------------------CCccccc--cceEEEEEee----------------------------
Q 022870 86 GTVKCWDIENGGLSS------------------NPSLTIK--TNSYHFCKLS---------------------------- 117 (291)
Q Consensus 86 g~i~iwd~~~~~~~~------------------~~~~~~~--~~~~~~~~~~---------------------------- 117 (291)
|.+.+||++..+... +|+..-. ........+.
T Consensus 267 G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 267 GDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred ceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 999999998766332 0000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 022870 118 -------------------------------------------------------------------------------- 117 (291)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (291)
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence
Q ss_pred ---------------------------cccCccce---eccCCCCceeeecccCcccccc--CCCCCC--cccCCCCCcE
Q 022870 118 ---------------------------LVKEPYAN---AKQANEPKDCYEREVGETVDTD--SLCDSK--DDVPAEGPKY 163 (291)
Q Consensus 118 ---------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~ 163 (291)
+..+.++. .....+....++++.+...... .+.|.. ...+-|+.+-
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence 00000100 1111222333333333222221 123333 3344444433
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
++++++.+|.++.||......+..+.. ++ .+..+. ++... + .++.+..|-.|+++|..+ .+
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l-------~~------~~~~iv-~hr~s--~--l~a~~~ddf~I~vvD~~t-~k 567 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRL-------GS------SITGIV-YHRVS--D--LLAIALDDFSIRVVDVVT-RK 567 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeecc-------CC------Ccceee-eeehh--h--hhhhhcCceeEEEEEchh-hh
Confidence 333666699999999999887777764 22 223332 44432 2 789999999999999999 89
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.++.+.+|.+.|++++|+|+|++|++++.|++||+||+.++.++..+
T Consensus 568 vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 568 VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 99999999999999999999999999999999999999999998775
No 129
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=7.8e-23 Score=160.20 Aligned_cols=230 Identities=20% Similarity=0.336 Sum_probs=168.6
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC--------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
-.++..|.+.|+.++|+|....|++++.||++++|++++ -+.+.+|.+|.++ |.|+++.+ ++..+++|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP--Vl~v~v~~--n~~~~ysg 362 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP--VLCVVVPS--NGEHCYSG 362 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc--eEEEEecC--CceEEEee
Confidence 448889999999999999888999999999999999932 2567889999955 99999999 99999999
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCC
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPA 158 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 158 (291)
+.||+|+.|++....-. . +..........+.||.+ +++++
T Consensus 363 g~Dg~I~~w~~p~n~dp------~------------------------------ds~dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDP------D------------------------------DSYDPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred ccCceeeeeccCCCCCc------c------------------------------cccCcchhccceeccccceeeeeecc
Confidence 99999999998732110 0 00111122223444544 67787
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCC----------CCC-----------------------------
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----------PNF----------------------------- 199 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~----------~~~----------------------------- 199 (291)
...+++ +++.||++++|+.....+ .++...+.... ..|
T Consensus 407 ~~~~Ll--scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 407 TKDRLL--SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ccccee--eecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 776665 666799999998865544 11111000000 000
Q ss_pred CC-CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEE
Q 022870 200 SS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL 278 (291)
Q Consensus 200 ~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 278 (291)
.. .....+.-+. ++|..+ +.+++.+|+.|+++|..+ +.++.....|...+++++++|+|.+|++++.|+.+++
T Consensus 484 ~~~~~~~~in~vV-s~~~~~----~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 484 PGPRRYPQINKVV-SHPTAD----ITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred CcccccCccceEE-ecCCCC----eeEecccCCceecccccc-cccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 00 0011223333 666532 899999999999999999 9999999999999999999999999999999999999
Q ss_pred EEcCCCceeee
Q 022870 279 YNLDHSTVSHC 289 (291)
Q Consensus 279 w~~~~~~~~~~ 289 (291)
|.+....+++.
T Consensus 558 ~kld~k~~~~e 568 (577)
T KOG0642|consen 558 WKLDVKTCVLE 568 (577)
T ss_pred hhccchheeec
Confidence 99988776653
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-21 Score=161.96 Aligned_cols=247 Identities=15% Similarity=0.161 Sum_probs=169.9
Q ss_pred cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
.+|+..-+.++|.|+|.+|++++.||.|++|+.... +...++..+. ..|.+++-.. ++|++|+.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s----~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYS----NHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecc----cceEEeeccceEEEeeC
Confidence 469999999999999999999999999999997665 4445554454 4488887654 79999999999999999
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecC
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGE 169 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~ 169 (291)
..++... ++.--..+...+.+.-.+... .+......+.+.+.... .....+.+|.. +.|+|.+..+ |+ .+
T Consensus 84 ps~~~~~--iL~Rftlp~r~~~v~g~g~~i-aagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~~~fL-Av-ss 157 (933)
T KOG1274|consen 84 PSGEEDT--ILARFTLPIRDLAVSGSGKMI-AAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPKGNFL-AV-SS 157 (933)
T ss_pred CCCCccc--eeeeeeccceEEEEecCCcEE-EeecCceeEEEEecccc-chheeecccCCceeeeeEcCCCCEE-EE-Ee
Confidence 8775432 222222333333333222211 11222223333333332 22334555555 8999998644 43 34
Q ss_pred CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc
Q 022870 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (291)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 249 (291)
-||.|++||+.++.+..++..... .........+..++ |+|++ | .++....|+.|.+|+..+ ..+...+.
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k----~n~~~~s~i~~~~a-W~Pk~--g--~la~~~~d~~Vkvy~r~~-we~~f~Lr 227 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDK----DNEFILSRICTRLA-WHPKG--G--TLAVPPVDNTVKVYSRKG-WELQFKLR 227 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCc----cccccccceeeeee-ecCCC--C--eEEeeccCCeEEEEccCC-ceeheeec
Confidence 489999999999988777663110 11111134556665 99984 3 688888899999999887 66666655
Q ss_pred --ccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 250 --VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 250 --~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.+...+..++|+|+|.|||+++.||.|.|||+++
T Consensus 228 ~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 228 DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 3445589999999999999999999999999994
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.9e-23 Score=155.51 Aligned_cols=192 Identities=23% Similarity=0.315 Sum_probs=143.4
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEE---E------------------EEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTV---S------------------SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~---~------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.|+++|.|+.|..|.|||+.-...+ . ...+|. +.|.+++|+.. -.+.|++||.|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~-~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRN-FRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccc-cceeEEecCCCce
Confidence 4679999999999999997531110 0 112455 44889999874 3378999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
|++||+.++++.. .++.+...... ++|+|....+++ +
T Consensus 268 V~lWD~~~g~p~~--s~~~~~k~Vq~----------------------------------------l~wh~~~p~~LL-s 304 (463)
T KOG0270|consen 268 VKLWDVDTGKPKS--SITHHGKKVQT----------------------------------------LEWHPYEPSVLL-S 304 (463)
T ss_pred EEEEEcCCCCcce--ehhhcCCceeE----------------------------------------EEecCCCceEEE-e
Confidence 9999999997754 22322222222 558888777766 7
Q ss_pred cCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 168 GEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
|+.|++|.+.|.|.... -..++ ..+.+-.+. |.|... ..++++..||.|+-+|+|++++++.
T Consensus 305 Gs~D~~V~l~D~R~~~~s~~~wk-------------~~g~VEkv~-w~~~se---~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 305 GSYDGTVALKDCRDPSNSGKEWK-------------FDGEVEKVA-WDPHSE---NSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred ccccceEEeeeccCccccCceEE-------------eccceEEEE-ecCCCc---eeEEEecCCceEEeeecCCCCCcee
Confidence 88999999999995322 12222 234455565 888733 3899999999999999999899999
Q ss_pred eccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870 247 AMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~ 283 (291)
++++|.++|.+|++++. -.+|+++|.|+.|++|++..
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 99999999999999543 33689999999999999864
No 132
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-21 Score=154.07 Aligned_cols=235 Identities=15% Similarity=0.202 Sum_probs=174.6
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (291)
Q Consensus 24 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 103 (291)
+.|+.. +.||.|. ...|.+|+..+++.......+. ..|+++.|++ +|.+|++|..+|.|.|||..+.+... .
T Consensus 183 ldWss~-n~laVal-g~~vylW~~~s~~v~~l~~~~~--~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~--~ 254 (484)
T KOG0305|consen 183 LDWSSA-NVLAVAL-GQSVYLWSASSGSVTELCSFGE--ELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTR--T 254 (484)
T ss_pred hhcccC-CeEEEEe-cceEEEEecCCCceEEeEecCC--CceEEEEECC--CCCEEEEeecCCeEEEEehhhccccc--c
Confidence 567744 3677664 3579999999888666655554 5599999999 99999999999999999998877654 2
Q ss_pred ccc-ccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEe
Q 022870 104 LTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 104 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
+.. +........+. ...............++++........+.+|.. +.|++++.++. +|+.|+.+.|||
T Consensus 255 ~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lA--SGgnDN~~~Iwd 329 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLA--SGGNDNVVFIWD 329 (484)
T ss_pred ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeec--cCCCccceEecc
Confidence 222 22222222222 222334445556666777777655556777766 99999997654 788899999999
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec--CCCcEEEEEccCCCCceeecccccccee
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 256 (291)
....+++..+. .| .+.+-+++ |+|... | .||+|+ .|+.|++||..+ +..+..+.. ...|.
T Consensus 330 ~~~~~p~~~~~--------~H----~aAVKA~a-wcP~q~-~--lLAsGGGs~D~~i~fwn~~~-g~~i~~vdt-gsQVc 391 (484)
T KOG0305|consen 330 GLSPEPKFTFT--------EH----TAAVKALA-WCPWQS-G--LLATGGGSADRCIKFWNTNT-GARIDSVDT-GSQVC 391 (484)
T ss_pred CCCccccEEEe--------cc----ceeeeEee-eCCCcc-C--ceEEcCCCcccEEEEEEcCC-CcEeccccc-CCcee
Confidence 98888888887 56 55677776 999854 3 788765 699999999998 888887765 67899
Q ss_pred EEEeecCCCeeEEec--CCCeEEEEEcCCCceeee
Q 022870 257 CLSIDESCNGGISGG--ADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 257 ~~~~~~~~~~l~s~s--~dg~i~vw~~~~~~~~~~ 289 (291)
+|.|++..+-|+++- .++.|.||++.+.+.+..
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 999999987776543 477899999988666544
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=150.11 Aligned_cols=241 Identities=17% Similarity=0.296 Sum_probs=159.7
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC--eEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEECC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE 94 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~ 94 (291)
.++|+++.|+|....|++|+.||+++||.+... ..+..+.... .||.+..|.| +|. .+++++....++.||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~--fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK--FPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeecc--CccceeeecC--CCceEEEecccceEEEEeecc
Confidence 578999999999999999999999999998642 3455555555 5599999999 888 88999999999999999
Q ss_pred CCCCCC-CCccccccceEEEEEeecccCccceeccCCCCc--eeeecccCccccc-cCCCCCC-cccCCCCCcEEEEecC
Q 022870 95 NGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK--DCYEREVGETVDT-DSLCDSK-DDVPAEGPKYMAVAGE 169 (291)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~ 169 (291)
+.+... .+.............++.... .....|..+ ..........+.. .+.+.-. ++|+.+++.++++ |+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~---fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~ 364 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSN---FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS-GG 364 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCC---eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE-cC
Confidence 887643 111111111112222222221 112222222 2222233333222 2333333 8899999877764 43
Q ss_pred CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-----CCc
Q 022870 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-----GIP 244 (291)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-----~~~ 244 (291)
+|.|.+||+++..++..+... ....+ ++++ .+++ |. +||+|+..|.|.|||.++. .+|
T Consensus 365 -~GeV~v~nl~~~~~~~rf~D~---------G~v~g--ts~~-~S~n---g~-ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 365 -TGEVYVWNLRQNSCLHRFVDD---------GSVHG--TSLC-ISLN---GS-YLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred -CceEEEEecCCcceEEEEeec---------Cccce--eeee-ecCC---Cc-eEEeccCcceEEEeccchhhccCCCCc
Confidence 689999999999999888742 11122 2232 4555 44 9999999999999996531 122
Q ss_pred eee-----------------------------------------cc------ccccceeEEEeecCCCeeEEecCCCeEE
Q 022870 245 LTA-----------------------------------------MK------VHLEPVLCLSIDESCNGGISGGADQKIV 277 (291)
Q Consensus 245 ~~~-----------------------------------------~~------~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 277 (291)
+.. +. ..-+.|++|+|+|.+-+||.|..+|.+.
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 110 00 1124689999999999999999999999
Q ss_pred EEEcCC
Q 022870 278 LYNLDH 283 (291)
Q Consensus 278 vw~~~~ 283 (291)
+|.+..
T Consensus 508 l~kL~h 513 (514)
T KOG2055|consen 508 LFKLHH 513 (514)
T ss_pred eEeecc
Confidence 998753
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-22 Score=155.72 Aligned_cols=218 Identities=15% Similarity=0.179 Sum_probs=177.9
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 100 (291)
-.|++......++++|+..+.|+|||+....+.+.++.|... |+++.++. ...+|++++..|.|.|..+.++....
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st--vt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST--VTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcce--eEEEEecC--CcceeEEeccCCcEEEEecccCcccc
Confidence 345555555579999999999999999977777888899855 99999998 66899999999999999999876533
Q ss_pred CCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEE
Q 022870 101 NPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVE 175 (291)
Q Consensus 101 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~ 175 (291)
.+.... .......+++..........+.+.+..|++.....+......|.. ++|+|..+.++++.|. |..|.
T Consensus 158 --~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~ 234 (673)
T KOG4378|consen 158 --TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKIN 234 (673)
T ss_pred --ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEE
Confidence 334442 333455666666667777888899999999998888777777766 9999999998887775 99999
Q ss_pred EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (291)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (291)
+||++..+....+.. ..+..+++ |.++ |. +|++|+..|.|..||++....|+..+..|...|
T Consensus 235 ~yD~~s~~s~~~l~y-------------~~Plstva-f~~~---G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV 296 (673)
T KOG4378|consen 235 IYDIRSQASTDRLTY-------------SHPLSTVA-FSEC---GT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV 296 (673)
T ss_pred Eeecccccccceeee-------------cCCcceee-ecCC---ce-EEEeecCCceEEEEecccCCCCceEeeecccce
Confidence 999998877766653 33556666 9998 55 999999999999999998789999999999999
Q ss_pred eEEEeecC
Q 022870 256 LCLSIDES 263 (291)
Q Consensus 256 ~~~~~~~~ 263 (291)
++++|-+.
T Consensus 297 t~vafq~s 304 (673)
T KOG4378|consen 297 TRVAFQPS 304 (673)
T ss_pred eEEEeeec
Confidence 99999554
No 135
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=1.1e-21 Score=147.69 Aligned_cols=208 Identities=18% Similarity=0.310 Sum_probs=154.7
Q ss_pred EecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 13 VLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
.+.||+++|..++|+| +...+|+|+.|.+|+||++..+ +.+..+.+|... |--++|+|. ..+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr--Vg~V~wHPt-A~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR--VGLVQWHPT-APNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee--EEEEeeccc-chhhHhhccC
Confidence 4689999999999999 7778999999999999998754 356678889855 999999996 4488999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
|.+|.+||+.+++..- ++........ ++|+.+|..+.
T Consensus 153 Dn~v~iWnv~tgeali----~l~hpd~i~S---------------------------------------~sfn~dGs~l~ 189 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALI----TLDHPDMVYS---------------------------------------MSFNRDGSLLC 189 (472)
T ss_pred CceEEEEeccCCceee----ecCCCCeEEE---------------------------------------EEeccCCceee
Confidence 9999999999997532 3332211111 55889997655
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---CCCcEEEEEccCC
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNP 241 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~ 241 (291)
+.+.|+.|++||.++++.+..-. +|.......+. |-.+ |. ++.+|. .+..+-+||..+.
T Consensus 190 --TtckDKkvRv~dpr~~~~v~e~~--------~heG~k~~Rai----fl~~---g~-i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 190 --TTCKDKKVRVIDPRRGTVVSEGV--------AHEGAKPARAI----FLAS---GK-IFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred --eecccceeEEEcCCCCcEeeecc--------cccCCCcceeE----Eecc---Cc-eeeeccccccccceeccCcccc
Confidence 66789999999999999988875 67554433332 6554 44 555553 5789999999886
Q ss_pred CCceee--ccccccceeEEEeecCCCeeE-EecCCCeEEEEEcCCCc
Q 022870 242 GIPLTA--MKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHST 285 (291)
Q Consensus 242 ~~~~~~--~~~h~~~v~~~~~~~~~~~l~-s~s~dg~i~vw~~~~~~ 285 (291)
.+++.. +.. +..|.-=-|+++..++. +|-.|+.||.|+++...
T Consensus 252 ~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 252 EEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 666543 333 23344344588888775 55579999999998765
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=5.8e-22 Score=148.34 Aligned_cols=211 Identities=18% Similarity=0.294 Sum_probs=150.3
Q ss_pred CCCceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeEE---EEEeeecCCcceEEEEEeecCCCCeEEE
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTV---SSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s 81 (291)
..+|+.++.+|...=+.|+||| .| .|+||.--+.|++|...++.-. ..+.+|... |-.++|+|. ....|++
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S--VEDLqWSpt-E~~vfaS 275 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS--VEDLQWSPT-EDGVFAS 275 (440)
T ss_pred ccCceEEecccCccceeeeccccccc-ccccCccccceEeeeeccCceeecCccccccccc--hhhhccCCc-cCceEEe
Confidence 4478999999999999999999 44 6888888889999998876432 234567744 999999997 3479999
Q ss_pred EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (291)
Q Consensus 82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
||.||+|+|||++.+.... ....+.+...... +.|+....
T Consensus 276 cS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNV--------------------------------------ISWnr~~~ 315 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNV--------------------------------------ISWNRREP 315 (440)
T ss_pred eecCceEEEEEecCCCccc--eeEeeccCCceee--------------------------------------EEccCCcc
Confidence 9999999999999875432 1111222111111 44666655
Q ss_pred cEEEEecCCcCeEEEEeCCCc---ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 162 KYMAVAGEQLSEVEIWDLNTA---ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
+++ +|+.||+++|||+|+. +++..|+ -| +.+++++. |+|... . .|++++.|..|.+||+
T Consensus 316 -lLa-sG~DdGt~~iwDLR~~~~~~pVA~fk--------~H----k~pItsie-W~p~e~--s-~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 316 -LLA-SGGDDGTLSIWDLRQFKSGQPVATFK--------YH----KAPITSIE-WHPHED--S-VIAASGEDNQITIWDL 377 (440)
T ss_pred -eee-ecCCCceEEEEEhhhccCCCcceeEE--------ec----cCCeeEEE-eccccC--c-eEEeccCCCcEEEEEe
Confidence 444 7888999999999864 4666776 34 66889998 999843 2 8999999999999998
Q ss_pred cCCCC---------------ceeecccc--ccceeEEEeecCCC-eeEEecCCCeEEEEE
Q 022870 239 RNPGI---------------PLTAMKVH--LEPVLCLSIDESCN-GGISGGADQKIVLYN 280 (291)
Q Consensus 239 ~~~~~---------------~~~~~~~h--~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~ 280 (291)
..... |-+.+--| ...+..+.|+++-. +|++.+.|| +.||.
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 64111 11122234 34688899976432 678888888 45543
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=2.8e-20 Score=144.40 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=159.8
Q ss_pred EecCC-ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 13 VLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 13 ~l~~h-~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
.++.+ ++-|.|++|.++| -++||.++|.|.||+..+.+..+....|. ..|.++.... + ..|++|+.|..|..|
T Consensus 240 ~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~-GtllSGgKDRki~~W 313 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--D-GTLLSGGKDRKIILW 313 (626)
T ss_pred ccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--C-ccEeecCccceEEec
Confidence 44443 3679999999998 58899999999999998877777777777 4599999998 7 456669999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEe
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVA 167 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 167 (291)
|-. -+..++ .+++........+... .+. .........+..-...+.......+|.. ++.+|+.+.++ +
T Consensus 314 d~~-y~k~r~--~elPe~~G~iRtv~e~-~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~--T 385 (626)
T KOG2106|consen 314 DDN-YRKLRE--TELPEQFGPIRTVAEG-KGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLL--T 385 (626)
T ss_pred ccc-cccccc--ccCchhcCCeeEEecC-CCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhee--e
Confidence 932 222221 1121111111111111 011 1111111111111111112222233433 88899987665 6
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
++.|+.+++|+ ..++..+.. ....+.++. |+|. | .++.|+..|...+.|.++ ...+..
T Consensus 386 ~gqdk~v~lW~--~~k~~wt~~-------------~~d~~~~~~-fhps---g--~va~Gt~~G~w~V~d~e~-~~lv~~ 443 (626)
T KOG2106|consen 386 CGQDKHVRLWN--DHKLEWTKI-------------IEDPAECAD-FHPS---G--VVAVGTATGRWFVLDTET-QDLVTI 443 (626)
T ss_pred ccCcceEEEcc--CCceeEEEE-------------ecCceeEee-ccCc---c--eEEEeeccceEEEEeccc-ceeEEE
Confidence 66799999999 445554443 234566676 9998 4 799999999999999997 555554
Q ss_pred ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
-.. .++++.+.|+|+|.+||.|+.|+.|++|.++.+...+
T Consensus 444 ~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 444 HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 444 8899999999999999999999999999998755443
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=149.82 Aligned_cols=201 Identities=19% Similarity=0.225 Sum_probs=147.6
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC---------CCeEEEEEeeecCCcceEEEEEeecCCCC
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV---------QHRTVSSSWVHSAAHGIVSVATGPSIGLN 77 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 77 (291)
.++.+..+.+|=.+|+|+.|+.||.+|+||+.||.|.+|.+. +-+.++.+..|.-+ |+++...+..-..
T Consensus 112 sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls--ITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 112 SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS--ITDLQIGSGGTNA 189 (476)
T ss_pred cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce--eEEEEecCCCccc
Confidence 346677788999999999999999999999999999999863 23567778888855 9999988721236
Q ss_pred eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC
Q 022870 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (291)
Q Consensus 78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (291)
+++|+|.|.++++||+..+.++. ++.......+ ++.+
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLl----ti~fp~si~a---------------------------------------v~lD 226 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLL----TITFPSSIKA---------------------------------------VALD 226 (476)
T ss_pred eEEEecCCceEEEEEeccceeeE----EEecCCccee---------------------------------------EEEc
Confidence 99999999999999999987644 2211111111 4467
Q ss_pred CCCCcEEEEecCCcCeEEEEeCCCcce--------eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC
Q 022870 158 AEGPKYMAVAGEQLSEVEIWDLNTAER--------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229 (291)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~ 229 (291)
|-+..++ .|..+|.|.+.++..... ...........+.||..+ ..+++++ ++-| |. .|++|+.
T Consensus 227 pae~~~y--iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~--~~ITcLa-is~D---gt-lLlSGd~ 297 (476)
T KOG0646|consen 227 PAERVVY--IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE--SAITCLA-ISTD---GT-LLLSGDE 297 (476)
T ss_pred ccccEEE--ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC--cceeEEE-EecC---cc-EEEeeCC
Confidence 7777666 688899999988764331 111111112233366543 3566776 7777 44 9999999
Q ss_pred CCcEEEEEccCCCCceeeccccccceeEEEeec
Q 022870 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE 262 (291)
Q Consensus 230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~ 262 (291)
||.|+|||+.+ .++++++....++|+.+.+.|
T Consensus 298 dg~VcvWdi~S-~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 298 DGKVCVWDIYS-KQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCCEEEEecch-HHHHHHHhhhccccceeEeec
Confidence 99999999998 899998886688999999854
No 139
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.5e-22 Score=169.21 Aligned_cols=219 Identities=17% Similarity=0.237 Sum_probs=167.0
Q ss_pred CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
..+.++..|++.|..+.|++ .+++||+|+.||.|.|||+++-+...........+.|.+++|+.. ..+.|++++.+|.
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGR 185 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh-hhHHhhccCCCCC
Confidence 34677888999999999999 556999999999999999987655444422223356999999985 3478999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
+.|||++..+. ++.+....... .++. ++|+|++..-++++
T Consensus 186 ~~iWDlr~~~p----ii~ls~~~~~~-~~S~-----------------------------------l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 186 AVIWDLRKKKP----IIKLSDTPGRM-HCSV-----------------------------------LAWHPDHATQLLVA 225 (1049)
T ss_pred ceeccccCCCc----ccccccCCCcc-ceee-----------------------------------eeeCCCCceeeeee
Confidence 99999998754 32333222110 0000 66999987776655
Q ss_pred cCCcC--eEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 168 GEQLS--EVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 168 g~~d~--~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
...|+ .|.+||+|.-. +++.++ +|. .-++++. |++.+ .+ +|++++.|+.|.+|+.++ ++.
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~--------~H~----~Gilsls-Wc~~D--~~-lllSsgkD~~ii~wN~~t-gEv 288 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILE--------GHQ----RGILSLS-WCPQD--PR-LLLSSGKDNRIICWNPNT-GEV 288 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhc--------ccc----cceeeec-cCCCC--ch-hhhcccCCCCeeEecCCC-ceE
Confidence 54443 49999998654 556665 663 3567777 99873 23 999999999999999999 899
Q ss_pred eeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCCc
Q 022870 245 LTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~ 285 (291)
+..+.....++..+.|.|... ++++++.||.|.|+.+.+..
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999988889999999977655 78889999999999998654
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.7e-21 Score=151.20 Aligned_cols=200 Identities=19% Similarity=0.311 Sum_probs=159.9
Q ss_pred EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
.+..-.-..++++.+||.+..+++..||.|.|||+.+...++.|++|. +.+.||..++ +|..|.+|+-|.+||.||
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht--DGascIdis~--dGtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISK--DGTKLWTGGLDNTVRCWD 579 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--CCceeEEecC--CCceeecCCCccceeehh
Confidence 344334557789999999999999999999999999999999999999 4599999999 999999999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (291)
+++++...+ +......|+ +.++|.++.++ .|-.++
T Consensus 580 lregrqlqq-------hdF~SQIfS------------------------------------Lg~cP~~dWla--vGMens 614 (705)
T KOG0639|consen 580 LREGRQLQQ-------HDFSSQIFS------------------------------------LGYCPTGDWLA--VGMENS 614 (705)
T ss_pred hhhhhhhhh-------hhhhhhhee------------------------------------cccCCCcccee--eecccC
Confidence 999875441 111111122 44789998665 577788
Q ss_pred eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (291)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (291)
.+.+......+. ..+. - +...+.++. |.+. |+ ++++.+.|..+..|..-- +..+...+. .
T Consensus 615 ~vevlh~skp~k-yqlh--------l----heScVLSlK-Fa~c---Gk-wfvStGkDnlLnawrtPy-GasiFqskE-~ 674 (705)
T KOG0639|consen 615 NVEVLHTSKPEK-YQLH--------L----HESCVLSLK-FAYC---GK-WFVSTGKDNLLNAWRTPY-GASIFQSKE-S 674 (705)
T ss_pred cEEEEecCCccc-eeec--------c----cccEEEEEE-eccc---Cc-eeeecCchhhhhhccCcc-ccceeeccc-c
Confidence 888887765432 2332 2 366889998 9998 55 999999999999999877 666666664 6
Q ss_pred cceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 253 EPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
..|.++..+-|.++++|||.|....||.+
T Consensus 675 SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 675 SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999999999999998875
No 141
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3e-20 Score=136.17 Aligned_cols=204 Identities=12% Similarity=0.166 Sum_probs=138.4
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.+.++-+.||...|++|+.+|-+..+++++.|++|++||++..++...+..... ..++|.| +|-++|++.....
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp--~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDP--EGLIFALANGSEL 163 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECC--CCcEEEEecCCCe
Confidence 467889999999999999999888999999999999999998888877765443 4678999 8888888888889
Q ss_pred EEEEECCCCCCCCCCccccc---cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-------cccC
Q 022870 88 VKCWDIENGGLSSNPSLTIK---TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-------DDVP 157 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 157 (291)
|++||++.-..-.-..+.+. ........++..+.........+ ...+.+--.+. +...+..+.. .+|+
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCc-EeeeEeeccCCCCcceeEEEC
Confidence 99999987533211122222 22333444444443332222211 11222221111 2222222111 7899
Q ss_pred CCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (291)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (291)
||++.++ +|+.||+|.+|+++++..+..+. +. ..+.+.++. |+|. +..-++.+..+.+|=
T Consensus 242 Pds~Fvl--~gs~dg~i~vw~~~tg~~v~~~~--------~~---~~~~~~~~~-fnP~------~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 242 PDSKFVL--SGSDDGTIHVWNLETGKKVAVLR--------GP---NGGPVSCVR-FNPR------YAMFVSASSNLVFWL 301 (311)
T ss_pred CCCcEEE--EecCCCcEEEEEcCCCcEeeEec--------CC---CCCCccccc-cCCc------eeeeeecCceEEEEe
Confidence 9998766 78889999999999999999888 32 245566776 9997 455555566788886
Q ss_pred cc
Q 022870 238 IR 239 (291)
Q Consensus 238 ~~ 239 (291)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 55
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=4.9e-21 Score=141.03 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=151.9
Q ss_pred CCCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEE---eeecCCcceEEEEEeecCCCCeEEE
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVIS 81 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s 81 (291)
...++...+.+|...|+.+.|+| +.+++++|+.|..||+||+++..++..+ .+|... |.++.|++ +|.+|++
T Consensus 123 ~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde--VLSvD~~~--~gd~i~S 198 (385)
T KOG1034|consen 123 VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE--VLSVDFSL--DGDRIAS 198 (385)
T ss_pred chhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc--EEEEEEcC--CCCeeec
Confidence 44567788999999999999999 4578999999999999999999999886 457755 99999999 9999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc--cc-ccCCCCCC--ccc
Q 022870 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET--VD-TDSLCDSK--DDV 156 (291)
Q Consensus 82 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~--~~~ 156 (291)
++.|.+|++|++...+.... +... ..+.+..... .+..... +. ....-|.. -+.
T Consensus 199 cGmDhslk~W~l~~~~f~~~----lE~s----~~~~~~~t~~-------------pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNVKEFKNK----LELS----ITYSPNKTTR-------------PFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred cCCcceEEEEecChhHHhhh----hhhh----cccCCCCccC-------------cCCccccccccccccccccchHHHH
Confidence 99999999999986543221 0000 0000000000 0000000 00 00011111 111
Q ss_pred CCCCCcEEEEecCCcCeEEEEeC-CCcceeeEeccccc-CCCCCCCCCcceeeeeEE-EecCCCCCCceEEEeecCCCcE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDL-NTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQ-AYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~p~~~~g~~~l~~g~~dg~i 233 (291)
-.-|+.++ +-+-++.|..|.. +-++.+...+.... ....++-......++-+. +|.|- ++ .||.|.+.|.|
T Consensus 258 rw~gd~il--SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---~~-~la~gnq~g~v 331 (385)
T KOG1034|consen 258 RWFGDFIL--SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---QK-MLALGNQSGKV 331 (385)
T ss_pred HHHhhhee--ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---HH-HHhhccCCCcE
Confidence 12344333 4444689999987 22222222211000 000011111233334443 25554 33 89999999999
Q ss_pred EEEEccCCCCcee-eccc--cccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 234 LVWDIRNPGIPLT-AMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 234 ~vwd~~~~~~~~~-~~~~--h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
++||+++...+.. ++.. ....|...+|+.++..|+...+|++|--||.-
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999997333221 2221 23578999999999999999999999999864
No 143
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=6e-21 Score=138.41 Aligned_cols=210 Identities=18% Similarity=0.205 Sum_probs=149.1
Q ss_pred CCccceeEEEEcCCC-----CEEEEecCCCeEEEEeCCC--CeE--EEEEee---ecCCcceEEEEEeecCCCCeEEEEe
Q 022870 16 GHRASVTDVCFHQTK-----PILFAGTTGGELRIWDTVQ--HRT--VSSSWV---HSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~-----~~l~s~~~dg~v~iwd~~~--~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
.|.-+++.+.|.|+. .+|||.+. .+|+|.+.. .+. ...+.. .....|+++..|+.. +.+++.+.|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 488899999999965 35666543 799999873 221 111111 122267999999976 668999999
Q ss_pred CCCeEEEEECCCCCC--CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870 84 RDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
-|-+..|||++++.. +...+ ..+...... ++|...+.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQL-IAHDKEV~D----------------------------------------Iaf~~~s~ 209 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQL-IAHDKEVYD----------------------------------------IAFLKGSR 209 (364)
T ss_pred ccCeEEEEEEeeccccceeeEE-EecCcceeE----------------------------------------EEeccCcc
Confidence 999999999998622 11000 001111110 66888888
Q ss_pred cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC-CcEEEEEccC
Q 022870 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRN 240 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d-g~i~vwd~~~ 240 (291)
.+|++.|. ||.+|+||+|..+.-..+-+. . . .......++ |++..+ + ++|+-..| ..|.|.|+|.
T Consensus 210 ~~FASvga-DGSvRmFDLR~leHSTIIYE~-------p-~-~~~pLlRLs-wnkqDp--n-ymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 210 DVFASVGA-DGSVRMFDLRSLEHSTIIYED-------P-S-PSTPLLRLS-WNKQDP--N-YMATFAMDSNKVVILDIRV 275 (364)
T ss_pred ceEEEecC-CCcEEEEEecccccceEEecC-------C-C-CCCcceeec-cCcCCc--h-HHhhhhcCCceEEEEEecC
Confidence 88886665 999999999987755444321 1 1 134456665 887633 2 77776554 5799999999
Q ss_pred CCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870 241 PGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~ 283 (291)
+..++..+++|.+.|++++|.|. ...|+|+++|..+.+||+++
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 99999999999999999999774 45789999999999999976
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=154.22 Aligned_cols=206 Identities=17% Similarity=0.248 Sum_probs=152.7
Q ss_pred EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
.|...+-++++++|+.+|+++|.|+.|-.|++-+..+......+++|..+ |.++.|+| .+++|++.+.||.|++||
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap--Vl~l~~~p--~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP--VLQLSYDP--KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc--eeeeeEcC--CCCEEEEEecCceEEEEE
Confidence 44556778999999999999999999999999999999888999999955 99999999 999999999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (291)
+.++.+........+.......... . .++|+|++..+++. + .|+
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~---------------------------~-------~~aW~Pk~g~la~~-~-~d~ 210 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRIC---------------------------T-------RLAWHPKGGTLAVP-P-VDN 210 (933)
T ss_pred cccchhhhhcccCCcccccccccee---------------------------e-------eeeecCCCCeEEee-c-cCC
Confidence 9988664311111111111100000 0 06799998887764 3 379
Q ss_pred eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (291)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (291)
.|++|+...++....+... + .......++ |+|. |+ |||+++.||.|.|||.++ ... ....
T Consensus 211 ~Vkvy~r~~we~~f~Lr~~-------~---~ss~~~~~~-wsPn---G~-YiAAs~~~g~I~vWnv~t-~~~----~~~~ 270 (933)
T KOG1274|consen 211 TVKVYSRKGWELQFKLRDK-------L---SSSKFSDLQ-WSPN---GK-YIAASTLDGQILVWNVDT-HER----HEFK 270 (933)
T ss_pred eEEEEccCCceeheeeccc-------c---cccceEEEE-EcCC---Cc-EEeeeccCCcEEEEeccc-chh----cccc
Confidence 9999999999988888742 1 122255565 9998 55 999999999999999997 211 2224
Q ss_pred cceeEEEeecCCCeeEEecCCCeEEE
Q 022870 253 EPVLCLSIDESCNGGISGGADQKIVL 278 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~v 278 (291)
..|.+++|.|+.+.+-.-...|...+
T Consensus 271 ~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 271 RAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred ceeEEEecCCCCCeeEEEeecccccc
Confidence 68999999988876644444444333
No 145
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=4.6e-20 Score=133.79 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=154.6
Q ss_pred CceEEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE-EEEEeeec---CCcceEEEEEeecCCCCeEEEEe
Q 022870 9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHS---AAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 9 ~~~~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
+++..|. .|-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+.... .....++-+|+|.-+++.+++.+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 3455566 5667999999999998888765 78999999987765 33332211 11337888999966788888766
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
|+++..||+++.+... .+........ .. +.|+|+-.++
T Consensus 192 -d~tl~~~D~RT~~~~~----sI~dAHgq~v-rd------------------------------------lDfNpnkq~~ 229 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNN----SIEDAHGQRV-RD------------------------------------LDFNPNKQHI 229 (370)
T ss_pred -CCcEEEEEccchhhhc----chhhhhccee-ee------------------------------------ccCCCCceEE
Confidence 6899999999876533 2221110000 00 5699998888
Q ss_pred EEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
++++ +.||.|++||.|.-+ +++.+. +| ...++++. |+|.. .+ +|++|+.|..|.+|....-.
T Consensus 230 lvt~-gDdgyvriWD~R~tk~pv~el~--------~H----sHWvW~VR-fn~~h--dq-LiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 230 LVTC-GDDGYVRIWDTRKTKFPVQELP--------GH----SHWVWAVR-FNPEH--DQ-LILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred EEEc-CCCccEEEEeccCCCccccccC--------CC----ceEEEEEE-ecCcc--ce-EEEecCCCceeEEEeccccc
Confidence 8754 459999999999654 556666 55 55899998 99983 34 89999999999999754211
Q ss_pred ----------------------------CceeeccccccceeEEEeecCCC-eeEEecCCCeEEEEEcCCC
Q 022870 243 ----------------------------IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 243 ----------------------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~ 284 (291)
..+.++..|++.|.+++|+.-.. .+|+-|.||.+.|=++...
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 02446778999999999954444 5689999999998776544
No 146
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=3.3e-20 Score=138.36 Aligned_cols=174 Identities=22% Similarity=0.336 Sum_probs=140.5
Q ss_pred eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC
Q 022870 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN 130 (291)
Q Consensus 51 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (291)
..+.+|..|... |.+++.+| +.++++||+.|..-.+|++.++.... ..+.+......
T Consensus 55 dS~~tF~~H~~s--vFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~--eltgHKDSVt~----------------- 111 (399)
T KOG0296|consen 55 DSLVTFDKHTDS--VFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAG--ELTGHKDSVTC----------------- 111 (399)
T ss_pred cceeehhhcCCc--eEEEEeCC--CCceEEecCCCceEEEEEccCCccee--EecCCCCceEE-----------------
Confidence 456678889855 99999999 77999999999999999999987533 22233333322
Q ss_pred CCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeE
Q 022870 131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
+.|+.+|.+ +| +|..+|.|+||+..++.....+..+ .. -+.=+
T Consensus 112 -----------------------~~Fshdgtl-LA-TGdmsG~v~v~~~stg~~~~~~~~e-----------~~-dieWl 154 (399)
T KOG0296|consen 112 -----------------------CSFSHDGTL-LA-TGDMSGKVLVFKVSTGGEQWKLDQE-----------VE-DIEWL 154 (399)
T ss_pred -----------------------EEEccCceE-EE-ecCCCccEEEEEcccCceEEEeecc-----------cC-ceEEE
Confidence 448888854 33 8999999999999999877776421 12 23334
Q ss_pred EEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
. |+|. +. +|++|+.||.+.+|.+.+ +...+.+.+|..++++=.|.|+|+.++++..||+|++|+..+++.++++
T Consensus 155 ~-WHp~---a~-illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 155 K-WHPR---AH-ILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred E-eccc---cc-EEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe
Confidence 4 9996 44 999999999999999998 6788899999999999999999999999999999999999999988764
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=136.52 Aligned_cols=213 Identities=18% Similarity=0.247 Sum_probs=151.4
Q ss_pred EEecCCccceeEEEEcC-CCCEEEEecCC-------CeEEEEeCCCC---------eEEEEEe-eecCCcceEEEEEeec
Q 022870 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTG-------GELRIWDTVQH---------RTVSSSW-VHSAAHGIVSVATGPS 73 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~-~~~~l~s~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~~~v~~~~~~~~ 73 (291)
..|..|.+.|+.++-+| +...|+|+-.+ ..+.||.+... +++..+. .+. ..|.|+.|.|
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav--g~i~cvew~P- 133 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV--GKINCVEWEP- 133 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHh--CceeeEEEcC-
Confidence 45677899999999999 56677776442 24779998643 2233333 233 3499999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC
Q 022870 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (291)
Q Consensus 74 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
++..+++-. |..|.+|++.........+ ..+........+..
T Consensus 134 -ns~klasm~-dn~i~l~~l~ess~~vaev-~ss~s~e~~~~fts----------------------------------- 175 (370)
T KOG1007|consen 134 -NSDKLASMD-DNNIVLWSLDESSKIVAEV-LSSESAEMRHSFTS----------------------------------- 175 (370)
T ss_pred -CCCeeEEec-cCceEEEEcccCcchheee-cccccccccceecc-----------------------------------
Confidence 888888766 7789999998775421101 00000000000000
Q ss_pred cccCC--CCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870 154 DDVPA--EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (291)
Q Consensus 154 ~~~~~--~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (291)
-+|+| ++ +.+++++ |+++..||+|+.++...++. +| ...+..+. |+|+ .+.+|++|+.||
T Consensus 176 g~WspHHdg-nqv~tt~--d~tl~~~D~RT~~~~~sI~d-------AH----gq~vrdlD-fNpn---kq~~lvt~gDdg 237 (370)
T KOG1007|consen 176 GAWSPHHDG-NQVATTS--DSTLQFWDLRTMKKNNSIED-------AH----GQRVRDLD-FNPN---KQHILVTCGDDG 237 (370)
T ss_pred cccCCCCcc-ceEEEeC--CCcEEEEEccchhhhcchhh-------hh----cceeeecc-CCCC---ceEEEEEcCCCc
Confidence 34777 44 3444343 68999999999888877775 45 33567776 9998 455999999999
Q ss_pred cEEEEEccCCCCceeeccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCC
Q 022870 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~ 283 (291)
.|++||.|....++.++.+|..+|+++.|+|. .+++.+||.|..|.+|...+
T Consensus 238 yvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 238 YVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 99999999988999999999999999999774 45678999999999997653
No 148
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=9.7e-20 Score=148.90 Aligned_cols=257 Identities=18% Similarity=0.192 Sum_probs=171.0
Q ss_pred CCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeE--EE--EEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VS--SSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
..|...+. -..+|+|++|+| +..+++.|..+|+|.+||+..+.. .. ....+.+.++|+.+.|.....+.-++++
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 45666666 467899999999 778999999999999999987654 22 2334445577999999873333569999
Q ss_pred eCCCeEEEEECCCCCCCCCCccc-c-c------cceEEEEEeecccCccceeccCCCCceeeec--ccCcc-c------c
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLT-I-K------TNSYHFCKLSLVKEPYANAKQANEPKDCYER--EVGET-V------D 145 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~------~ 145 (291)
+.||.|..|+++......+.... . . ........+.+..........+...+.++.. ..... . .
T Consensus 312 ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 99999999988765442211100 0 0 0011111112221112222222233333321 11111 1 1
Q ss_pred ccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870 146 TDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (291)
Q Consensus 146 ~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 220 (291)
.....|.. +.++|.+..+++++| |.+++||... ...++..+.. + ...+++++ |+|..+.
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~--------~----~~~v~~va-WSptrpa- 455 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDS--------S----PDYVTDVA-WSPTRPA- 455 (555)
T ss_pred ccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhh--------c----cceeeeeE-EcCcCce-
Confidence 12223333 889999998888666 7999999988 5566666652 2 34578887 9998552
Q ss_pred ceEEEeecCCCcEEEEEccC-CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 221 FVNVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.++++..||.|.+||+.. ...|+.+...+....+.+.|+++|+.|+.|...|.+++|++..
T Consensus 456 --vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 456 --VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred --EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 899999999999999964 2467777776667778888899999999999999999999964
No 149
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=6.1e-19 Score=138.71 Aligned_cols=232 Identities=10% Similarity=0.092 Sum_probs=148.6
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeE-EEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 109 (291)
..+++++.|+.|++||+.+++.+..+..+. .+.+++|+| ++..+ ++++.++.|++||..+++... .+....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~--~~~~~~- 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG--TLPSGP- 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE--eccCCC-
Confidence 578899999999999999999888887653 267899999 88876 567788999999998876533 111111
Q ss_pred eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC--CcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeE
Q 022870 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS--KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~ 187 (291)
......+.+.................|++.............. .++|+|++..+++ +...+..+.+||.++++....
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVN-TSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEE-EecCCCeEEEEeCCCCeEEEE
Confidence 1122223322221212222345667777766543322211221 2889999976654 333234678889988776654
Q ss_pred ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-----c--ceeEEEe
Q 022870 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-----E--PVLCLSI 260 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-----~--~v~~~~~ 260 (291)
... ++ ....+. |+|+ |+.+++++..++.|++||+++ ++.+..+..+. . ....++|
T Consensus 153 ~~~-------~~------~~~~~~-~s~d---g~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 153 VLV-------DQ------RPRFAE-FTAD---GKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred EEc-------CC------CccEEE-ECCC---CCEEEEEcCCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEE
Confidence 431 11 123454 9988 542335556799999999998 66655544221 1 2356889
Q ss_pred ecCCCeeE-EecCCCeEEEEEcCCCceeee
Q 022870 261 DESCNGGI-SGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 261 ~~~~~~l~-s~s~dg~i~vw~~~~~~~~~~ 289 (291)
+|++++++ +.+.++.+.+||+++++++..
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 99999754 445577899999998887654
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=8.1e-20 Score=146.74 Aligned_cols=259 Identities=16% Similarity=0.160 Sum_probs=165.8
Q ss_pred CceEEecCCccceeEEEEcCCCC---EEEEecCCCeEEEEeCCCCe--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~---~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
....+++||.++|+|+.|-|+.. ++++|+.|+.|++|.++... ++..+++|. +.++++.. .........
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a--~~~~~~~~~ 118 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA--RSSVMTCKA 118 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe--eeeEEEeec
Confidence 35678999999999999999776 89999999999999998443 445555544 45555554 212333347
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc----cccccCCCCCC----cc
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE----TVDTDSLCDSK----DD 155 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~ 155 (291)
.|+++.+||.+..+......+.+.........++....+.......++......+-... .....+.+|.+ ++
T Consensus 119 ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~ 198 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLA 198 (764)
T ss_pred cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhh
Confidence 89999999996555211111222222211122223333344455555555555443333 44556788888 88
Q ss_pred cCCCCC-cEEEEecCCcCeEEEEeCCCcceee---------------------Eec--ccccCCCCCCCCCcceeeeeEE
Q 022870 156 VPAEGP-KYMAVAGEQLSEVEIWDLNTAERCT---------------------RLH--QNSCGGSPNFSSKGRGMCMAVQ 211 (291)
Q Consensus 156 ~~~~~~-~~~~~~g~~d~~i~~wd~~~~~~~~---------------------~~~--~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
|...+. .+++++++.|..||||.+.-+.... .+. .....-..|| ...++++.
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH----eDWV~sv~ 274 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH----EDWVYSVW 274 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc----ccceEEEE
Confidence 876655 7777799999999999875332100 000 0000111244 55788887
Q ss_pred EecCCCCCCceEEEeecCCCcEEEEEccCCCC------------------------------------------------
Q 022870 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------------------------------------------------ 243 (291)
Q Consensus 212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~------------------------------------------------ 243 (291)
|+|. +. .|++++.|.++.+|...+..-
T Consensus 275 -W~p~---~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 275 -WHPE---GL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred -Eccc---hh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 9987 33 688888888888886543100
Q ss_pred ---ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 244 ---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 244 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
....+.||.+.|.+++|+|.|.+|++.|.|.+-|++-.-
T Consensus 350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 012234788899999999999999999999998887654
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=5.7e-20 Score=133.77 Aligned_cols=177 Identities=16% Similarity=0.241 Sum_probs=128.6
Q ss_pred cCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCCeEEEEE
Q 022870 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWD 92 (291)
Q Consensus 15 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd 92 (291)
.+|+-.|.++.|-| |.-++.+++.|.+++|||.++-+....|+.. +.|++-+++|..-.+ ++++|..|-.|++-|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 47899999999999 5558889999999999999999888888765 449999999854333 566777888999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 172 (291)
+..+.+.. ++..+...... +.|+|..+.+++ +|+.||
T Consensus 175 i~SGs~sH----~LsGHr~~vla--------------------------------------V~Wsp~~e~vLa-tgsaDg 211 (397)
T KOG4283|consen 175 IASGSFSH----TLSGHRDGVLA--------------------------------------VEWSPSSEWVLA-TGSADG 211 (397)
T ss_pred ccCCccee----eeccccCceEE--------------------------------------EEeccCceeEEE-ecCCCc
Confidence 99997754 33333222221 558999887776 788899
Q ss_pred eEEEEeCCCc-ceeeEecccc--cCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 173 EVEIWDLNTA-ERCTRLHQNS--CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 173 ~i~~wd~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
.|++||++.. -+...+.... ..+.......+.+.+..++ |..+ |. ++++.+.|..+++|+..++.
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla-~tSd---~~-~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA-WTSD---AR-YLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeee-eccc---ch-hhhhccCccceEEeecccCc
Confidence 9999999865 3444443211 0000011122456677776 9887 55 89999999999999998743
No 152
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-20 Score=141.89 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=146.1
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 101 (291)
.+++|+++|..|++|+.||++|||+..+...+.....|..+ |.++.|+| ||..|++.+.| ..+||+.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e--V~DL~FS~--dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE--VKDLDFSP--DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc--cccceeCC--CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 78999999999999999999999998877777777777755 99999999 99999999999 899999999854431
Q ss_pred CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC---CcEEEEecCCcCeEEEEe
Q 022870 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG---PKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~~wd 178 (291)
..-.-.......| .|+.++ ...+++.-..-+.|+.||
T Consensus 223 ~t~~~k~~~~~~c----------------------------------------RF~~d~~~~~l~laa~~~~~~~v~~~~ 262 (398)
T KOG0771|consen 223 KTPFSKDEMFSSC----------------------------------------RFSVDNAQETLRLAASQFPGGGVRLCD 262 (398)
T ss_pred cCCcccchhhhhc----------------------------------------eecccCCCceEEEEEecCCCCceeEEE
Confidence 1100111111112 133332 233443444456677777
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (291)
+.....-..++. .........+.++. .+++ |+ +++.|+.||.|-|++..+.......-+.|...|+.+
T Consensus 263 ~~~w~~~~~l~~-------~~~~~~~~siSsl~-VS~d---Gk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l 330 (398)
T KOG0771|consen 263 ISLWSGSNFLRL-------RKKIKRFKSISSLA-VSDD---GK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL 330 (398)
T ss_pred eeeeccccccch-------hhhhhccCcceeEE-EcCC---Cc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE
Confidence 654432111110 00001122466676 8887 55 999999999999999998444455566899999999
Q ss_pred EeecCCCeeEEecCCCeEEEEEcCC
Q 022870 259 SIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.|+|+.+++++.+.|..+.|..+.-
T Consensus 331 tF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 331 TFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999999988765
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=135.63 Aligned_cols=248 Identities=13% Similarity=0.149 Sum_probs=144.1
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
+.+.|.+|..+|++++||++|+.|+|++.|..|++||+..|.+++.+... +||+.+.|+|... +.+++.-.+..-.
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~-n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKR-NKCVATIMEESPV 132 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccC-CeEEEEEecCCcE
Confidence 45678899999999999999999999999999999999999998888754 5588888888533 3333332233333
Q ss_pred EEECCCCCCCCCCc---cccccc-e-EEEEEeecccCccceeccCCCCceeeecccCccccccC-CCCCC---cccCCCC
Q 022870 90 CWDIENGGLSSNPS---LTIKTN-S-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS-LCDSK---DDVPAEG 160 (291)
Q Consensus 90 iwd~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~ 160 (291)
+-++...+...-+. ..+... . ..... . ..........+...+++......+.... ...+. +.++-.|
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr---~-g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDR---R-GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccC---C-CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence 33333211100000 000000 0 00000 0 0000001111222222222222111110 00011 5577777
Q ss_pred CcEEEEecCCcCeEEEEeCCCcc---------eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CC
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAE---------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-ED 230 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~d 230 (291)
+.++ ..+.|+.||.|+++.-- +.++++. -.+...+.-++|+.+ |. |+++|+ ..
T Consensus 209 ~~li--iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD-----------vVNk~~Wk~ccfs~d---ge-Yv~a~s~~a 271 (405)
T KOG1273|consen 209 RFLI--INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD-----------VVNKLQWKKCCFSGD---GE-YVCAGSARA 271 (405)
T ss_pred cEEE--EecCCceEEEEehhhhcccCccCCcChhHHHHH-----------HHhhhhhhheeecCC---cc-EEEeccccc
Confidence 7666 45568999999987311 1122211 011111221248876 66 565554 55
Q ss_pred CcEEEEEccCCCCceeeccccc-cceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 231 GSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
..++||.... +..++.+.|.. .....+.|+|-...+++- ..|.+++|.....
T Consensus 272 HaLYIWE~~~-GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 272 HALYIWEKSI-GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeEEEEecCC-cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 7899999888 99999999877 578899999998888887 6889999987653
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=6.2e-19 Score=137.06 Aligned_cols=207 Identities=22% Similarity=0.402 Sum_probs=159.9
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCC--------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg--------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
.+.+.||+..|.|++.+|+.-.+++|-.-| .|++||..+-+.++.+.... ..|.+++|++.+.|.+++..
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~--~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFD--RGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecccc--ccceeeeecccCCCceEEEe
Confidence 456779999999999999988888876555 49999988877777776444 55999999998677777654
Q ss_pred --eCCCeEEEEECCCCCCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC
Q 022870 83 --GRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (291)
Q Consensus 83 --~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (291)
+.+..+.+||...+.... ..+.. ..... .+|+|.
T Consensus 175 D~s~~h~lSVWdWqk~~~~~----~vk~sne~v~~---------------------------------------a~FHPt 211 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLG----PVKTSNEVVFL---------------------------------------ATFHPT 211 (626)
T ss_pred cCCCccccchhhchhhhccC----cceeccceEEE---------------------------------------EEeccC
Confidence 345679999998765433 12111 11111 449999
Q ss_pred CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
++++++++|- +.+.+|+.+.+....+.. .+....+..+.+++ |.++ | -+++|..+|.|.||+..
T Consensus 212 d~nliit~Gk--~H~~Fw~~~~~~l~k~~~--------~fek~ekk~Vl~v~-F~en---g--dviTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 212 DPNLIITCGK--GHLYFWTLRGGSLVKRQG--------IFEKREKKFVLCVT-FLEN---G--DVITGDSGGNILIWSKG 275 (626)
T ss_pred CCcEEEEeCC--ceEEEEEccCCceEEEee--------ccccccceEEEEEE-EcCC---C--CEEeecCCceEEEEeCC
Confidence 9999987664 899999999887665543 23333457889998 9998 4 49999999999999998
Q ss_pred CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+ .+..+....|.+.|.+++.-.+|. |+||+.|..|..||
T Consensus 276 ~-~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd 314 (626)
T KOG2106|consen 276 T-NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD 314 (626)
T ss_pred C-ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc
Confidence 7 666666669999999999999997 55699999999999
No 155
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=148.54 Aligned_cols=197 Identities=18% Similarity=0.243 Sum_probs=155.8
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEE---eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS---WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
...+++++.++-|++.+.|...|.|-+|++.+|-...++ ..|..+ |+.++... -++.+++++.+|.++.||..
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~--V~gla~D~--~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE--VTGLAVDG--TNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc--eeEEEecC--CCceEEEccCcceEEEEecC
Confidence 367899999999999999999999999999999888888 467755 99999987 66789999999999999998
Q ss_pred CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (291)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (291)
+..... .+........ +..+... .+++ .+..|-.|
T Consensus 524 ~k~l~~----~l~l~~~~~~---------------------------------------iv~hr~s-~l~a-~~~ddf~I 558 (910)
T KOG1539|consen 524 KKVLKK----SLRLGSSITG---------------------------------------IVYHRVS-DLLA-IALDDFSI 558 (910)
T ss_pred Ccceee----eeccCCCcce---------------------------------------eeeeehh-hhhh-hhcCceeE
Confidence 775432 1111111000 1122222 2343 44558899
Q ss_pred EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (291)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~ 254 (291)
+++|+.+.+.++.+. ||.. .++++. |+|+ |+ .|++++.|++|++||+.+ +..+..+.- ..+
T Consensus 559 ~vvD~~t~kvvR~f~--------gh~n----ritd~~-FS~D---gr-WlisasmD~tIr~wDlpt-~~lID~~~v-d~~ 619 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFW--------GHGN----RITDMT-FSPD---GR-WLISASMDSTIRTWDLPT-GTLIDGLLV-DSP 619 (910)
T ss_pred EEEEchhhhhhHHhh--------cccc----ceeeeE-eCCC---Cc-EEEEeecCCcEEEEeccC-cceeeeEec-CCc
Confidence 999999999999998 8855 456665 9998 66 999999999999999999 787777764 678
Q ss_pred eeEEEeecCCCeeEEecCC-CeEEEEEcC
Q 022870 255 VLCLSIDESCNGGISGGAD-QKIVLYNLD 282 (291)
Q Consensus 255 v~~~~~~~~~~~l~s~s~d-g~i~vw~~~ 282 (291)
.+++.|+|+|.+||+...| .-|++|.-.
T Consensus 620 ~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 620 CTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 8999999999999999998 669999643
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=4.8e-19 Score=130.47 Aligned_cols=237 Identities=13% Similarity=0.184 Sum_probs=161.4
Q ss_pred ccceeEEEEc-------CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc---ceEEEEEeecCCCCeEEEEeCCCe
Q 022870 18 RASVTDVCFH-------QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 18 ~~~v~~l~~~-------~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
...|...+|- |+.+++|+.+.|.-|++||.-+|+...++.+-.+.+ ...+++|+| ||.+|++|.. ..
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGyk-rc 180 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGYK-RC 180 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeeccc-ce
Confidence 4567777775 567799999999999999999999888876543222 357999999 9999988765 69
Q ss_pred EEEEEC-CCCCCCC-CCcccc-c---cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccC
Q 022870 88 VKCWDI-ENGGLSS-NPSLTI-K---TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVP 157 (291)
Q Consensus 88 i~iwd~-~~~~~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 157 (291)
|+++|+ +.++... .+.+.. + ..-.....+++..........-+....++.-...+.. ..+-+|.. +.|.
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-~llggh~gGvThL~~~ 259 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-QLLGGHGGGVTHLQWC 259 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-eeecccCCCeeeEEec
Confidence 999999 4443321 111111 1 1122223333333333333444444455544444333 33346655 8999
Q ss_pred CCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 158 AEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 158 ~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
++|+.++. .+..|..|..||+|... ++..+. +|....+-.+. |.-+. .++ +|++|+.||.|++|
T Consensus 260 edGn~lfs-GaRk~dkIl~WDiR~~~~pv~~L~--------rhv~~TNQRI~----FDld~-~~~-~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 260 EDGNKLFS-GARKDDKILCWDIRYSRDPVYALE--------RHVGDTNQRIL----FDLDP-KGE-ILASGDTDGSVRVW 324 (406)
T ss_pred cCcCeecc-cccCCCeEEEEeehhccchhhhhh--------hhccCccceEE----EecCC-CCc-eeeccCCCccEEEE
Confidence 99998773 34457889999999654 555565 55443333332 44332 266 99999999999999
Q ss_pred EccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 237 d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
|+++.+.++..+..|+..++.++++|-..++++++..
T Consensus 325 dlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 325 DLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 9999888899999999999999999998888888754
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-19 Score=133.39 Aligned_cols=197 Identities=18% Similarity=0.239 Sum_probs=143.4
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 110 (291)
..+|++...|.|++||..+++.+..++++... +..++|......+.+.+++.||+|++||++..........+-....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~--~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT--TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc--ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 46889999999999999999999999998865 8899997743457899999999999999998765432111111100
Q ss_pred EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC-CCcEEEEecC----CcCeEEEEeCCCcce-
Q 022870 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGE----QLSEVEIWDLNTAER- 184 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~----~d~~i~~wd~~~~~~- 184 (291)
.. .+|... ..++++ +|. .+-.|.+||+|..+.
T Consensus 119 ~f-----------------------------------------~~ld~nck~~ii~-~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 119 PF-----------------------------------------ICLDLNCKKNIIA-CGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred cc-----------------------------------------eEeeccCcCCeEE-eccccccCceEEEEEEeccccch
Confidence 11 112222 123333 443 267799999998876
Q ss_pred eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC--CceeeccccccceeEEEeec
Q 022870 185 CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDE 262 (291)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~~~ 262 (291)
+..+.. .| ..-++.+. |+|..++ .|++|+.||.|.+||++... ..+...-.|...|..+.|..
T Consensus 157 l~~~~e-------SH----~DDVT~lr-FHP~~pn---lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~ 221 (376)
T KOG1188|consen 157 LRQLNE-------SH----NDDVTQLR-FHPSDPN---LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS 221 (376)
T ss_pred hhhhhh-------hc----cCcceeEE-ecCCCCC---eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence 665554 45 45678887 9998553 99999999999999997532 23334445778899999966
Q ss_pred CC-CeeEEecCCCeEEEEEcCCCce
Q 022870 263 SC-NGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 263 ~~-~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
++ +.|.+-+......+|+++.+..
T Consensus 222 ~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 222 KKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CCcceEEEEEccCceeEEEccCCCh
Confidence 65 4588889999999999998763
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-19 Score=140.73 Aligned_cols=241 Identities=12% Similarity=0.161 Sum_probs=156.0
Q ss_pred ceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 20 SVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 20 ~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
.+.++.|+.... .+++-+.|..+++|.-. ++ ....-+... +.-.|++... ...++++|+..+.|+|||++.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~~~Vp~~~k~~g--d~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKTPEVPRVRKLTG--DNAFCVACAS--QSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEeccc-CCCCccceeecccc--chHHHHhhhh--cceeeeccCcCceeeehhhHH
Confidence 488999988653 23444668889999843 33 111111111 1234555444 447899999999999999995
Q ss_pred CCCCCCCccccccceEEEEEeecccCcc-ceeccCCCCceeeecccCccccccCCC-CCC---cccCCCCCcEEEEecCC
Q 022870 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANEPKDCYEREVGETVDTDSLC-DSK---DDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~g~~ 170 (291)
..+.+ .++.+......+....... ......++.+.+..+............ .+. +.|+|..+.++.+ .+.
T Consensus 111 kl~hr----~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~-asd 185 (673)
T KOG4378|consen 111 KLIHR----FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI-ASD 185 (673)
T ss_pred HHHhh----hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe-ecc
Confidence 44322 2333322222222222222 222333444444444333222211111 111 7899998877764 556
Q ss_pred cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (291)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (291)
+|.|.+||+....+...+.. .|..+ +..++ |+|. .+.+|++.+.|..|.+||.+. .+....+..
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~-------~HsAP----~~gic-fsps---ne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y 249 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASE-------AHSAP----CRGIC-FSPS---NEALLVSVGYDKKINIYDIRS-QASTDRLTY 249 (673)
T ss_pred CCeEEEEeccCCCcccchhh-------hccCC----cCcce-ecCC---ccceEEEecccceEEEeeccc-ccccceeee
Confidence 99999999998888877764 56554 44444 9998 333899999999999999997 666666654
Q ss_pred cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 251 h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
+.+..+++|.++|.+|+.|+..|.|..||++..+-.
T Consensus 250 -~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 250 -SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred -cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 789999999999999999999999999999976543
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=7.9e-19 Score=142.05 Aligned_cols=255 Identities=13% Similarity=0.168 Sum_probs=175.0
Q ss_pred EecCCccceeEEEEcC-C----------CCEEEEecCCCeEEEEeCCCC---eEEEE--E--------------------
Q 022870 13 VLRGHRASVTDVCFHQ-T----------KPILFAGTTGGELRIWDTVQH---RTVSS--S-------------------- 56 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~-~----------~~~l~s~~~dg~v~iwd~~~~---~~~~~--~-------------------- 56 (291)
.+--|...|+.+.--| + ..-+.|++.|++|++||++.+ +..+. +
T Consensus 364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 3444888888876544 1 126899999999999998752 11100 0
Q ss_pred ----------eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEE--EEEeecccCc--
Q 022870 57 ----------WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH--FCKLSLVKEP-- 122 (291)
Q Consensus 57 ----------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-- 122 (291)
........+.+++.+| +|..|++|..-|.|++|++...+... .+..+... ...++.....
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~----~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTC----FMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhh----heecccceeEEEeecCchhhhH
Confidence 0011124589999999 99999999999999999998776533 33333332 2222222111
Q ss_pred cceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCc-EEEEecCCcCeEEEEeCCC-cceeeEecccccCCC
Q 022870 123 YANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK-YMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGS 196 (291)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~g~~d~~i~~wd~~~-~~~~~~~~~~~~~~~ 196 (291)
.......+..++++++.........+.+|.. +.|...|-+ -++ +++.|+.|. |+... ......+..
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi-scGADksim-Fr~~qk~~~g~~f~r------ 589 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI-SCGADKSIM-FRVNQKASSGRLFPR------ 589 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE-eccCchhhh-eehhccccCceeccc------
Confidence 1223334455677788877778888888877 677666532 334 455577654 44433 222233332
Q ss_pred CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc---cccceeEEEeecCCCeeEEecCC
Q 022870 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
+|........+.+. ..|... ++++++.|..|+|||+.+ ++..+.|++ |++....+..+|.|.|||+...|
T Consensus 590 -~t~t~~ktTlYDm~-Vdp~~k----~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 590 -HTQTLSKTTLYDMA-VDPTSK----LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred -cccccccceEEEee-eCCCcc----eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence 34344566788887 888743 899999999999999999 888888874 66778889999999999999999
Q ss_pred CeEEEEEcCCCceee
Q 022870 274 QKIVLYNLDHSTVSH 288 (291)
Q Consensus 274 g~i~vw~~~~~~~~~ 288 (291)
.++.++|+-+++++-
T Consensus 663 ktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVA 677 (1080)
T ss_pred CceEEEEeccchhhh
Confidence 999999999998764
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=6.5e-19 Score=129.79 Aligned_cols=242 Identities=17% Similarity=0.201 Sum_probs=168.9
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCC------------eEEEEEeeecCCcceEEEEEeec-----CCCCeEEEEe
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQH------------RTVSSSWVHSAAHGIVSVATGPS-----IGLNKVISQG 83 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~s~~ 83 (291)
...+.|+|||..|++-+.|..+.+|++... +...+++...+ ..|...+|-+. .+.+++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg-~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG-ETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC-CEEEEEEeeeccccCCCccceeeecc
Confidence 456899999999999999999999997531 11122222222 45888888631 1567899999
Q ss_pred CCCeEEEEECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCC--CCceeeec-ccCccc---cccCCCC---CC
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQAN--EPKDCYER-EVGETV---DTDSLCD---SK 153 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~---~~~~~~~---~~ 153 (291)
.|.-|++||..+++... .+.. ........+++..+++....+..+ ..++++++ ++++.. .....+. .+
T Consensus 131 r~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999999998644 2221 111222233444455554444433 44556666 333321 1111111 11
Q ss_pred ----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-
Q 022870 154 ----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY- 228 (291)
Q Consensus 154 ----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~- 228 (291)
++|+|....+++ .|+....+-||.-..+.++..+- +| .+-++-+. |.++ |. .|.+|.
T Consensus 209 iisc~a~sP~~~~~~a-~gsY~q~~giy~~~~~~pl~llg--------gh----~gGvThL~-~~ed---Gn-~lfsGaR 270 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLA-VGSYGQRVGIYNDDGRRPLQLLG--------GH----GGGVTHLQ-WCED---GN-KLFSGAR 270 (406)
T ss_pred eeeeeeccCCCCccee-eecccceeeeEecCCCCceeeec--------cc----CCCeeeEE-eccC---cC-eeccccc
Confidence 899999887777 56667889999888888888877 66 45667776 9998 44 666665
Q ss_pred CCCcEEEEEccCCCCceeecccccc-ceeEEEe--ecCCCeeEEecCCCeEEEEEcCC
Q 022870 229 EDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSI--DESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 229 ~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.|-.|..||+|....++..+..|.+ .-..|.| +|++++|++|+.||.|++||+.+
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 5789999999988899999998877 4456666 79999999999999999999987
No 161
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=3.1e-19 Score=143.42 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=153.9
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
++.|-||--.|++++.+|+++++||++.. ..|++|+..+......+..|.-. |+.++|+| |+++|++++.|
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT--VT~l~FSp--dg~~LLsvsRD 593 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT--VTRLAFSP--DGRYLLSVSRD 593 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE--EEEEEECC--CCcEEEEeecC
Confidence 55688999999999999999999999764 35899999988888889999855 99999999 99999999999
Q ss_pred CeEEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.++.+|......... +.+.... .....+. ..|+|++.+++
T Consensus 594 Rt~sl~~~~~~~~~e---~~fa~~k~HtRIIWd------------------------------------csW~pde~~Fa 634 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDE---FRFACLKAHTRIIWD------------------------------------CSWSPDEKYFA 634 (764)
T ss_pred ceEEeeeeecccchh---hhhccccccceEEEE------------------------------------cccCcccceeE
Confidence 999999985443211 1111111 1111111 44999997744
Q ss_pred EEecCCcCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCc-eEEEeecCCCcEEEEEccCC
Q 022870 165 AVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-VNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~-~~l~~g~~dg~i~vwd~~~~ 241 (291)
++++|++|++|..... +.+..+.. .+....++++. |.|.....+ ..+++|-+.|.|.+|.....
T Consensus 635 --TaSRDK~VkVW~~~~~~d~~i~~~a~----------~~~~~aVTAv~-~~~~~~~e~~~~vavGle~GeI~l~~~~~~ 701 (764)
T KOG1063|consen 635 --TASRDKKVKVWEEPDLRDKYISRFAC----------LKFSLAVTAVA-YLPVDHNEKGDVVAVGLEKGEIVLWRRKRE 701 (764)
T ss_pred --EecCCceEEEEeccCchhhhhhhhch----------hccCCceeeEE-eeccccccccceEEEEecccEEEEEecccc
Confidence 8899999999998877 33333211 11244566665 666422111 17899999999999996510
Q ss_pred CC-----------ceeeccccccceeEEEeecC----------CCeeEEecCCCeEEEEEcC
Q 022870 242 GI-----------PLTAMKVHLEPVLCLSIDES----------CNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 242 ~~-----------~~~~~~~h~~~v~~~~~~~~----------~~~l~s~s~dg~i~vw~~~ 282 (291)
.+ .+....+|...|+.+.|.|. ...|++|+.|..+|++++.
T Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 702 HRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11 11122356778999999754 3346999999999999875
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=3.7e-18 Score=129.24 Aligned_cols=255 Identities=17% Similarity=0.221 Sum_probs=152.2
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC--------C--------CeEEEEEeeecCCcceEEEEEeec
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--------Q--------HRTVSSSWVHSAAHGIVSVATGPS 73 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~ 73 (291)
.+..|..|...|+++.|+|+|.+||+|+.+|.|.+|-.. + ....+.+.+|... |..++|+|
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d--iydL~Ws~- 133 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD--IYDLAWSP- 133 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccc--hhhhhccC-
Confidence 356788999999999999999999999999999999765 2 1234556677755 99999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeec---------c-----
Q 022870 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYER---------E----- 139 (291)
Q Consensus 74 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----- 139 (291)
++.++++++.|.++++||+..+.... ....+.+......+.+..........+- ....+.+ .
T Consensus 134 -d~~~l~s~s~dns~~l~Dv~~G~l~~--~~~dh~~yvqgvawDpl~qyv~s~s~dr-~~~~~~~~~~~~~~~~~~~~m~ 209 (434)
T KOG1009|consen 134 -DSNFLVSGSVDNSVRLWDVHAGQLLA--ILDDHEHYVQGVAWDPLNQYVASKSSDR-HPEGFSAKLKQVIKRHGLDIMP 209 (434)
T ss_pred -CCceeeeeeccceEEEEEeccceeEe--eccccccccceeecchhhhhhhhhccCc-ccceeeeeeeeeeeeeeeeEee
Confidence 99999999999999999999987654 3333333333333333222211111111 0000000 0
Q ss_pred ----cCccccccCCCCCC--------cccCCCCCcEEEEecCC--cCe-----EEEEeCCC-cceeeEecccccCCCCCC
Q 022870 140 ----VGETVDTDSLCDSK--------DDVPAEGPKYMAVAGEQ--LSE-----VEIWDLNT-AERCTRLHQNSCGGSPNF 199 (291)
Q Consensus 140 ----~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~--d~~-----i~~wd~~~-~~~~~~~~~~~~~~~~~~ 199 (291)
...........|.. ++|+|+|..++.-+|.. .+. .++|+-.. .++...++
T Consensus 210 ~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---------- 279 (434)
T KOG1009|consen 210 AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---------- 279 (434)
T ss_pred ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC----------
Confidence 00000000011111 88999997655322211 111 22332211 11122222
Q ss_pred CCCcceeeeeEEEecCC-------CCC-------CceEEEeecCCCcEEEEEccCCCCceeecc-ccccceeEEEeecCC
Q 022870 200 SSKGRGMCMAVQAYLPS-------KSQ-------GFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESC 264 (291)
Q Consensus 200 ~~~~~~~~~~~~~~~p~-------~~~-------g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 264 (291)
........+. |+|- ... -+..++.++. ..|+|||.++ -.|+.... -|-..|+.++|+++|
T Consensus 280 --~~~k~~lavr-~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~-~~P~~~v~nihy~~iTDiaws~dg 354 (434)
T KOG1009|consen 280 --SPKKPALAVR-FSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT-LEPLAVVDNIHYSAITDIAWSDDG 354 (434)
T ss_pred --CCCcceEEEE-eeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc-ccceEEEeeeeeeeecceeecCCC
Confidence 1122223332 3331 110 1114555554 5799999998 66666544 588899999999999
Q ss_pred CeeEEecCCCeEEEEEcCCCce
Q 022870 265 NGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 265 ~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
.+|+..|.||...+-.++..++
T Consensus 355 ~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 355 SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cEEEEeccCCceEEEEEcchhc
Confidence 9999999999888777766543
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.6e-19 Score=131.33 Aligned_cols=131 Identities=14% Similarity=0.210 Sum_probs=94.5
Q ss_pred CCceEEecCCccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeEEEEEe--eecCCcceEEEEEeecCCCCeEEEEe
Q 022870 8 PDPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
.+.+..+++|...++.++|.. .+..+.+|+.||+|++||++.......+. .+.+ .+..+++.+- .++.+++|.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~-~~f~~ld~nc--k~~ii~~Gt 136 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG-TPFICLDLNC--KKNIIACGT 136 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC-CcceEeeccC--cCCeEEecc
Confidence 457788999999999999987 46689999999999999998765544443 3332 4578888876 557777775
Q ss_pred C----CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC
Q 022870 84 R----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (291)
Q Consensus 84 ~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (291)
. |-.|.+||++..+........-+...... +.|+|.
T Consensus 137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~----------------------------------------lrFHP~ 176 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ----------------------------------------LRFHPS 176 (376)
T ss_pred ccccCceEEEEEEeccccchhhhhhhhccCccee----------------------------------------EEecCC
Confidence 4 66899999998765211111111111111 669999
Q ss_pred CCcEEEEecCCcCeEEEEeCCCc
Q 022870 160 GPKYMAVAGEQLSEVEIWDLNTA 182 (291)
Q Consensus 160 ~~~~~~~~g~~d~~i~~wd~~~~ 182 (291)
.+++++ +|+.||.|.+||+...
T Consensus 177 ~pnlLl-SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 177 DPNLLL-SGSVDGLVNLFDTKKD 198 (376)
T ss_pred CCCeEE-eecccceEEeeecCCC
Confidence 999887 7899999999999753
No 164
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=127.60 Aligned_cols=204 Identities=12% Similarity=0.180 Sum_probs=146.4
Q ss_pred cCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 15 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
+-|.-.|..+-....+.+|++++.|..|.+|++. |+.+..+...... -+..+.+| +|+++++++.---|++|.+-
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~--n~~aavSP--~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS--NYDAAVSP--DGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc--ccceeeCC--CCcEEEEecCCCCceEEEEE
Confidence 3477788888888889999999999999999987 9999888776644 78889999 99999999999999999874
Q ss_pred CCC---CCC-CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEE
Q 022870 95 NGG---LSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAV 166 (291)
Q Consensus 95 ~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (291)
-.+ ... ..++. +.+|+. ++|+++..+++
T Consensus 259 f~kdG~fqev~rvf~------------------------------------------LkGH~saV~~~aFsn~S~r~v-- 294 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFS------------------------------------------LKGHQSAVLAAAFSNSSTRAV-- 294 (420)
T ss_pred eccCcchhhhhhhhe------------------------------------------eccchhheeeeeeCCCcceeE--
Confidence 322 110 01122 223333 67999988776
Q ss_pred ecCCcCeEEEEeCCC----cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 167 AGEQLSEVEIWDLNT----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
+.+.||++++||+.- ++....++.-. .......+....+. .+|+ |+ .|+ .+....|++|..++ +
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----~pl~aag~~p~RL~-lsP~---g~-~lA-~s~gs~l~~~~se~-g 362 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----APLHAAGSEPVRLE-LSPS---GD-SLA-VSFGSDLKVFASED-G 362 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCC-----cchhhcCCCceEEE-eCCC---Cc-EEE-eecCCceEEEEccc-C
Confidence 677899999999863 22222222100 11111223344666 9998 54 444 44556799999998 6
Q ss_pred Cceeec-cccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 243 IPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 243 ~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+....+ +.|...|.+|+|+++|+++++++ |..+++..
T Consensus 363 ~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 363 KDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 655554 47999999999999999999997 77788875
No 165
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5e-19 Score=139.05 Aligned_cols=232 Identities=15% Similarity=0.163 Sum_probs=150.2
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..+.|.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..++++.+. +|. ..|.++.|.|..+..++++|..|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcceE
Confidence 356789999999999999999999999999999999998888888775 466 45999999997666788999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEE
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYM 164 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (291)
+++|+...+--. .-+....... ....|.. ++..|.+++.+
T Consensus 120 ~lfdl~~~~~~~----~d~~~~~~~~--------------------------------~~~cht~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 120 KLFDLDSSKEGG----MDHGMEETTR--------------------------------CWSCHTDRVKRIATAPNGPHTF 163 (758)
T ss_pred EEEecccccccc----cccCccchhh--------------------------------hhhhhhhhhhheecCCCCCceE
Confidence 999998543211 0000000000 0011111 66778887777
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCC-CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
- ++++||+++-||++.......-.. +..... -+. ..-...++. .+|..+ ++|++|+.|-..++||.+...+
T Consensus 164 w-sasEDGtirQyDiREph~c~p~~~-~~~~l~ny~~--~lielk~lt-isp~rp---~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 164 W-SASEDGTIRQYDIREPHVCNPDED-CPSILVNYNP--QLIELKCLT-ISPSRP---YYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred E-EecCCcceeeecccCCccCCcccc-ccHHHHHhch--hhheeeeee-ecCCCC---ceEEecCCCchhhhhhhhhhcc
Confidence 6 466799999999997432111000 000000 010 112234454 788743 3999999999999999542111
Q ss_pred -----------------ceeec-cccc--------c---ceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 244 -----------------PLTAM-KVHL--------E---PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 244 -----------------~~~~~-~~h~--------~---~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
++.-+ .+|. . .++-+.|+|+|.-|...=..-.|+++|++.++-.
T Consensus 236 s~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 236 SFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 11111 1222 1 2455677999876644433447999999877643
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4e-18 Score=120.99 Aligned_cols=211 Identities=18% Similarity=0.236 Sum_probs=142.1
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCC---------C-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQ---------H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~---------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..|.+-+++|.+++|+.|..+|+|.+..+++ + ..+...+.|.. +|+.++|.. ..|++|+. |.|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg--piy~~~f~d----~~Lls~gd-G~V 83 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG--PIYYLAFHD----DFLLSGGD-GLV 83 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC--Ceeeeeeeh----hheeeccC-ceE
Confidence 4577778999999999999999999998764 1 23344567774 499999986 67777775 999
Q ss_pred EEEECCCCCCCC--CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 89 KCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 89 ~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
+=|..+...... ++........ ... ....+.-..+.+.|..+.++.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~-~~~------------------------------~~evPeINam~ldP~enSi~~- 131 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPM-QVD------------------------------AVEVPEINAMWLDPSENSILF- 131 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCcc-ccC------------------------------cccCCccceeEeccCCCcEEE-
Confidence 999887543210 1111111100 000 000000000446677777765
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+| .|+.++.||+++++..+.++ ||.+ ++.++. -... ++ .+++|++||++|+||.++ ++.+.
T Consensus 132 Ag-GD~~~y~~dlE~G~i~r~~r--------GHtD----YvH~vv-~R~~--~~--qilsG~EDGtvRvWd~kt-~k~v~ 192 (325)
T KOG0649|consen 132 AG-GDGVIYQVDLEDGRIQREYR--------GHTD----YVHSVV-GRNA--NG--QILSGAEDGTVRVWDTKT-QKHVS 192 (325)
T ss_pred ec-CCeEEEEEEecCCEEEEEEc--------CCcc----eeeeee-eccc--Cc--ceeecCCCccEEEEeccc-cceeE
Confidence 34 38999999999999999999 8855 555554 3222 13 699999999999999999 77766
Q ss_pred ecc---------ccc-cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 247 AMK---------VHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 247 ~~~---------~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.+. .|. .+|-+++.+.+ +|++|+. ..+.+|++++.+...++
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCc--eEEecCC-CceeEEeccCCCceEEE
Confidence 543 222 35666766666 8888874 46999999988776553
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=138.79 Aligned_cols=238 Identities=16% Similarity=0.181 Sum_probs=158.4
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 99 (291)
.|+.++|-|||..|+.+.. ..+.+||.++|..+.++++|+.. |.+++|+. +|.++++|+.|+.|.+|+-.-....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDt--VycVAys~--dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDT--VYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccce--EEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence 7999999999998877654 47999999999999999999955 99999999 9999999999999999987644322
Q ss_pred CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcCeEEEEe
Q 022870 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
. --+.....+..+.+...... ...-.....|...............-- .+|..||.+++ -|-.||+|.+-+
T Consensus 89 k----YSH~D~IQCMsFNP~~h~La--sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyla--lG~~nGTIsiRN 160 (1081)
T KOG1538|consen 89 K----YSHNDAIQCMSFNPITHQLA--SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLA--LGMFNGTISIRN 160 (1081)
T ss_pred e----eccCCeeeEeecCchHHHhh--hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEE--EeccCceEEeec
Confidence 1 11222233333332221111 111111222222222221111111111 67889997766 477789998886
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC------------------------------------------
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------------------------------------ 216 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------------------------------------ 216 (291)
-.. +....+.. +...+.++++++ |+|.
T Consensus 161 k~g-Eek~~I~R---------pgg~Nspiwsi~-~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 161 KNG-EEKVKIER---------PGGSNSPIWSIC-WNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS 229 (1081)
T ss_pred CCC-CcceEEeC---------CCCCCCCceEEE-ecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence 543 33223321 111233444444 4443
Q ss_pred -CCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 217 -KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 217 -~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
-.+|+ +++.|+.|+.+.+|-.+ +..+.++.....+|++++..|++++++.|+.||+|.-|++-..
T Consensus 230 Yf~NGE-y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 230 YFTNGE-YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred eccCCc-EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 12355 88888889999998755 6777777777889999999999999999999999999987544
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=4e-18 Score=123.96 Aligned_cols=202 Identities=18% Similarity=0.215 Sum_probs=146.2
Q ss_pred CCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe---EEEEEeeecCCcceEEEEEeecCCC-CeEEEEeCCCeEEE
Q 022870 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKC 90 (291)
Q Consensus 16 ~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~i 90 (291)
.+.+++++..|+. +.+++.+.+-|.++.|||++++. ....+-.|..+ |..++|.. ++ +.|++.+.||+||+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE--V~DIaf~~--~s~~~FASvgaDGSvRm 223 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE--VYDIAFLK--GSRDVFASVGADGSVRM 223 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc--eeEEEecc--CccceEEEecCCCcEEE
Confidence 3678999999998 88899999999999999999863 34556778855 99999998 44 57889999999999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (291)
+|++..+... .+++-........ .++|++...+++|+-+..
T Consensus 224 FDLR~leHST-IIYE~p~~~~pLl--------------------------------------RLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 224 FDLRSLEHST-IIYEDPSPSTPLL--------------------------------------RLSWNKQDPNYMATFAMD 264 (364)
T ss_pred EEecccccce-EEecCCCCCCcce--------------------------------------eeccCcCCchHHhhhhcC
Confidence 9999765321 0111110000000 067888888888877776
Q ss_pred cCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-----c
Q 022870 171 LSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----P 244 (291)
Q Consensus 171 d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~ 244 (291)
...|.+.|+|... ++..++ +|. +.+.+++ |.|... . .|++++.|..+.+||+.+..+ +
T Consensus 265 S~~V~iLDiR~P~tpva~L~--------~H~----a~VNgIa-WaPhS~--~-hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLR--------NHQ----ASVNGIA-WAPHSS--S-HICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CceEEEEEecCCCcceehhh--------cCc----ccccceE-ecCCCC--c-eeeecCCcceEEEEecccccccCCCCc
Confidence 7889999999754 556666 674 4556665 999843 2 899999999999999986443 3
Q ss_pred eeeccccccceeEEEee-cCCCeeEEecCCCeEEE
Q 022870 245 LTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVL 278 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~v 278 (291)
+..+. -.+.|+.+.|+ ....+++.+. ++++.+
T Consensus 329 ilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 329 ILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 44444 36789999996 4555777665 444444
No 169
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=3.7e-18 Score=136.22 Aligned_cols=253 Identities=17% Similarity=0.231 Sum_probs=157.9
Q ss_pred EEEEcC---CCCEEEEecCCCeEEEEeCCCCeE------EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 23 DVCFHQ---TKPILFAGTTGGELRIWDTVQHRT------VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 23 ~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
+..|++ ....||.+..||.|.++|....+. +.....|... |..+.|.| ...+|++++.|.++++||+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~wap--ge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKWAP--GESLLVSASGDSTIRPWDV 129 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeeccCC--CceeEEEccCCceeeeeee
Confidence 366765 456899999999999999765322 3455678866 99999999 7789999999999999999
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcc-------------------ccccCC-----
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-------------------VDTDSL----- 149 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~----- 149 (291)
++.++....++..+........+.+............+...+|+++-... ....+.
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 99887664334444444444444444333334444455566666543220 000000
Q ss_pred --CCCC-------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCC
Q 022870 150 --CDSK-------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220 (291)
Q Consensus 150 --~~~~-------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 220 (291)
.+.. +.+..|. ..++++|..|+.|++||++..................|.....+. ++ +.-|.. |
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~-~n---L~lDss-G 283 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ-VN---LILDSS-G 283 (720)
T ss_pred cccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee-EE---EEecCC-C
Confidence 0000 2222344 456667777999999999987765544422211222232222222 22 333322 5
Q ss_pred ceEEEeecCCCcEEEEEccCCC-Cceeecccccccee--EEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 221 FVNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVL--CLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~--~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
. +|++.+.|+.|++||+.... .++..+.++...-. .-..+|++.+|++|+.|...++|.+.+...
T Consensus 284 t-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 284 T-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred C-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 5 66666679999999998633 35555655432111 113389999999999999999999987654
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.1e-18 Score=137.02 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=94.6
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcce-------eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-------CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (291)
+.|+|....-+++++ .||.|++|.+..+.. ...+. +| ...++++. |+|-..+ .|++
T Consensus 633 l~WdPFD~~rLAVa~-ddg~i~lWr~~a~gl~e~~~tPe~~lt--------~h----~eKI~slR-fHPLAad---vLa~ 695 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVAT-DDGQINLWRLTANGLPENEMTPEKILT--------IH----GEKITSLR-FHPLAAD---VLAV 695 (1012)
T ss_pred cccCCCChHHeeecc-cCceEEEEEeccCCCCcccCCcceeee--------cc----cceEEEEE-ecchhhh---Hhhh
Confidence 788888877777554 599999999876532 22233 44 44677787 9997442 8999
Q ss_pred ecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
++.|-+|++||+++ .+....+.+|.+.|.+++|+|+|+.+|+.+.||+|+||+.+++.
T Consensus 696 asyd~Ti~lWDl~~-~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 696 ASYDSTIELWDLAN-AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhccceeeeeehhh-hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 99999999999999 88888999999999999999999999999999999999988754
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-17 Score=124.02 Aligned_cols=255 Identities=13% Similarity=0.207 Sum_probs=175.3
Q ss_pred CceEEec-CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLR-GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
+|+.... .|...|.|++|.....++++|+.+++|.+.|+++.+.+..+........|+.+..+| -.+.|++.+.+|.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKL 172 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC--CCceEEEEecCce
Confidence 5566555 366999999999988999999999999999999998888775444334699999999 5689999999999
Q ss_pred EEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCcccccc------CCCCC-C---ccc
Q 022870 88 VKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD------SLCDS-K---DDV 156 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~---~~~ 156 (291)
|.+||.+...-...+...... ...+...|.+..-.........+...+|+.+........ ++... . ..|
T Consensus 173 V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~ 252 (609)
T KOG4227|consen 173 VSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW 252 (609)
T ss_pred EEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheee
Confidence 999999876532222222222 233444555554444455555566677777655432211 11111 1 779
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcce---eeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRG---MCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
+|.|..+++. -....-.+||+-+.++.. ++. .|...... .+-+++ |.-+ +.+++|+.+-.|
T Consensus 253 ~~~G~Q~msi--RR~~~P~~~D~~S~R~~V-~k~-------D~N~~GY~N~~T~KS~~-F~~D-----~~v~tGSD~~~i 316 (609)
T KOG4227|consen 253 SPSGNQFMSI--RRGKCPLYFDFISQRCFV-LKS-------DHNPNGYCNIKTIKSMT-FIDD-----YTVATGSDHWGI 316 (609)
T ss_pred CCCCCeehhh--hccCCCEEeeeeccccee-Eec-------cCCCCcceeeeeeeeee-eecc-----eeeeccCcccce
Confidence 9999988743 233445678888755432 222 23221111 122333 6633 269999999999
Q ss_pred EEEEccCC----C------------------CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 234 LVWDIRNP----G------------------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 234 ~vwd~~~~----~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
++|.+... + ..+..+++|...++.+.|+|...+|++.+..+.+++|.-
T Consensus 317 ~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 317 HIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 99987521 1 124568899999999999999999999999999999964
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.2e-18 Score=135.52 Aligned_cols=216 Identities=15% Similarity=0.196 Sum_probs=142.3
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------C----eEEEEEeeecCCcceEEEEEeecCCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H----RTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 78 (291)
+++.+|++|.++|.|++..+++..+++|+.||+|+.|++.. . .....+.+|... |+.+++++ ...+
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~--~~~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSS--TKDR 410 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecc--cccc
Confidence 67899999999999999999999999999999999996542 1 234567788866 99999999 6678
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc------c-cCCCC
Q 022870 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD------T-DSLCD 151 (291)
Q Consensus 79 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~ 151 (291)
|++++.||++++|+....... .+...........+.......... ........+.+....... . ...+.
T Consensus 411 Llscs~DgTvr~w~~~~~~~~---~f~~~~e~g~Plsvd~~ss~~a~~-~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~ 486 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPC---TFGEPKEHGYPLSVDRTSSRPAHS-LASFRFGYTSIDDMEVVSDLLIFESSASPGP 486 (577)
T ss_pred eeeecCCceEEeeccCCcCcc---ccCCccccCCcceEeeccchhHhh-hhhcccccccchhhhhhhheeeccccCCCcc
Confidence 999999999999998765431 122221111111111111110000 011111111111111000 0 00000
Q ss_pred -----CC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870 152 -----SK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (291)
Q Consensus 152 -----~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (291)
.. +..+|.+...+ ++..|+.|+++|..+++.+.... .| ...+.+++ +.|++. +|+
T Consensus 487 ~~~~~in~vVs~~~~~~~~--~~hed~~Ir~~dn~~~~~l~s~~--------a~----~~svtsla-i~~ng~----~l~ 547 (577)
T KOG0642|consen 487 RRYPQINKVVSHPTADITF--TAHEDRSIRFFDNKTGKILHSMV--------AH----KDSVTSLA-IDPNGP----YLM 547 (577)
T ss_pred cccCccceEEecCCCCeeE--ecccCCceecccccccccchhee--------ec----cceeccee-ecCCCc----eEE
Confidence 01 66777776544 67789999999999999988877 55 34566665 999854 999
Q ss_pred eecCCCcEEEEEccCCCCceeeccccc
Q 022870 226 AGYEDGSILVWDIRNPGIPLTAMKVHL 252 (291)
Q Consensus 226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (291)
+|+.||.+++|.+.. ..++.....|.
T Consensus 548 s~s~d~sv~l~kld~-k~~~~es~~~r 573 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDV-KTCVLESTAHR 573 (577)
T ss_pred eecCCceeehhhccc-hheeecccccc
Confidence 999999999999986 56666555554
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=8.9e-19 Score=129.27 Aligned_cols=215 Identities=18% Similarity=0.250 Sum_probs=148.7
Q ss_pred CccceeEEEEcCC----CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 17 h~~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
|....+.++|+-+ ..++|.|+.-|.|+|.|+.++++...+.+|... |..+.+.|. +.++++++|.|.+|++||
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s--INeik~~p~-~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS--INEIKFHPD-RPQLVLSASKDHSVRLWN 164 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc--chhhhcCCC-CCcEEEEecCCceEEEEe
Confidence 7788888888752 458899999999999999999999999999976 999999994 336899999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEec
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g 168 (291)
+++..++. .+.. ..+|.+ +.|+++|.+++ ++
T Consensus 165 I~~~~Cv~----VfGG---------------------------------------~egHrdeVLSvD~~~~gd~i~--Sc 199 (385)
T KOG1034|consen 165 IQTDVCVA----VFGG---------------------------------------VEGHRDEVLSVDFSLDGDRIA--SC 199 (385)
T ss_pred ccCCeEEE----Eecc---------------------------------------cccccCcEEEEEEcCCCCeee--cc
Confidence 99987643 1111 112222 56999998654 66
Q ss_pred CCcCeEEEEeCCCcceeeEeccc-------cc---C------CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQN-------SC---G------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~-------~~---~------~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (291)
+.|.++++|++...+....++.. .. + +...-...++.++-++. |- |. ++++-+-++.
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr-w~-----gd-~ilSkscena 272 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR-WF-----GD-FILSKSCENA 272 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH-HH-----hh-heeecccCce
Confidence 67999999999854322211110 00 0 00001111233444444 54 33 8899899999
Q ss_pred EEEEEccCCCC-------------ceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 233 ILVWDIRNPGI-------------PLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 233 i~vwd~~~~~~-------------~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
|..|..-...+ .+..+......|+-+.| ++-+++||.|...|.|.+||++....
T Consensus 273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 99998721121 22334444455666655 88899999999999999999987543
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=6.6e-16 Score=122.95 Aligned_cols=256 Identities=14% Similarity=0.125 Sum_probs=152.3
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEe-cCCCeEEEEeCCC-CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG 86 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg 86 (291)
.+.++. +.+....++++|++++|+++ ..++.|.+|++.. ++.. .............++++| ++++|++++. ++
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~~~~p~~i~~~~--~g~~l~v~~~~~~ 102 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPLPGSPTHISTDH--QGRFLFSASYNAN 102 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-EeeeecCCCCceEEEECC--CCCEEEEEEcCCC
Confidence 445554 34567889999999988765 4588899999863 3321 111111112367899999 9888887764 88
Q ss_pred eEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccCccccc------cC-CCCCC--ccc
Q 022870 87 TVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT------DS-LCDSK--DDV 156 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~--~~~ 156 (291)
.|.+|++++.....+....... ...+...+.+..............+.+|++........ .. .+... ++|
T Consensus 103 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred eEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999999754322211211111 12233334444333333444556677788765332210 11 12111 899
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCC--cc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNT--AE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG 231 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg 231 (291)
+|++++++++ ...++.|.+||+.. ++ .+..+.. .+ .. .........+. |+|+ |+ +++++. .++
T Consensus 183 ~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p---~~-~~~~~~~~~i~-~~pd---g~-~lyv~~~~~~ 250 (330)
T PRK11028 183 HPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDM--MP---AD-FSDTRWAADIH-ITPD---GR-HLYACDRTAS 250 (330)
T ss_pred CCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEec--CC---Cc-CCCCccceeEE-ECCC---CC-EEEEecCCCC
Confidence 9999877764 44479999999973 22 2333321 00 00 00112233465 9998 55 666664 578
Q ss_pred cEEEEEccCCCCceeecccc---ccceeEEEeecCCCeeEEecC-CCeEEEEEcC
Q 022870 232 SILVWDIRNPGIPLTAMKVH---LEPVLCLSIDESCNGGISGGA-DQKIVLYNLD 282 (291)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~ 282 (291)
.|.+|++...+.. ..+.++ ......+.++|+|++|+++.. +++|.+|+++
T Consensus 251 ~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999753322 222222 124568999999999987765 8999999885
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=6.4e-18 Score=127.67 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=126.8
Q ss_pred EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCcee
Q 022870 56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (291)
Q Consensus 56 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (291)
+.+|.. +|..++|+|.+| ..+++||+|.+|.||++-.+.+.......
T Consensus 77 v~GHt~--~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltep------------------------------ 123 (472)
T KOG0303|consen 77 VCGHTA--PVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEP------------------------------ 123 (472)
T ss_pred ccCccc--cccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccc------------------------------
Confidence 457774 499999999844 89999999999999999876553311100
Q ss_pred eecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEE
Q 022870 136 YEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (291)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (291)
...+.+|+. ++|+|...++++++|+ |..|.+||+.+++.+.++. | ..+++++.
T Consensus 124 ---------vv~L~gH~rrVg~V~wHPtA~NVLlsag~-Dn~v~iWnv~tgeali~l~---------h----pd~i~S~s 180 (472)
T KOG0303|consen 124 ---------VVELYGHQRRVGLVQWHPTAPNVLLSAGS-DNTVSIWNVGTGEALITLD---------H----PDMVYSMS 180 (472)
T ss_pred ---------eEEEeecceeEEEEeecccchhhHhhccC-CceEEEEeccCCceeeecC---------C----CCeEEEEE
Confidence 011223333 7799999999887666 8999999999999887775 3 56899998
Q ss_pred EecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc-ceeEEEeecCCCeeEEec---CCCeEEEEEcCC
Q 022870 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGG---ADQKIVLYNLDH 283 (291)
Q Consensus 212 ~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s---~dg~i~vw~~~~ 283 (291)
|+-+++ +|++.+.|.+|||||.++ ++.+..-.+|.+ .-..+.|-.++..+-||- .+.++-+||...
T Consensus 181 -fn~dGs----~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 181 -FNRDGS----LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred -eccCCc----eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 999854 999999999999999999 888888888876 345567777887444442 367899998654
No 176
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.8e-17 Score=125.28 Aligned_cols=197 Identities=16% Similarity=0.195 Sum_probs=142.5
Q ss_pred cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (291)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
.+|+++.|+| ....|++++.|++++||.+....-..-....+...+...+.+.+.+...........-...|++...+
T Consensus 214 ~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecC--CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 6799999999 77899999999999999987654322113334445555555555444333333333445556766555
Q ss_pred cccc-cCCCCCC-----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC
Q 022870 143 TVDT-DSLCDSK-----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS 216 (291)
Q Consensus 143 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 216 (291)
.... ...++.. ...+++++.++ ..| ..|.|.+....+++.+..++ ..+.+..+. |+.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G-~~G~I~lLhakT~eli~s~K-------------ieG~v~~~~-fsSd 355 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIA-IAG-NNGHIHLLHAKTKELITSFK-------------IEGVVSDFT-FSSD 355 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEE-Ecc-cCceEEeehhhhhhhhheee-------------eccEEeeEE-EecC
Confidence 3322 3333332 77899997544 355 47999999999999998888 467788887 9966
Q ss_pred CCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce--eEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 217 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV--LCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 217 ~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
++ .|++.+.+|.|++||+++ ..+++.+.. .+.| ++++.++++.+||+||..|.|.|||.++
T Consensus 356 ---sk-~l~~~~~~GeV~v~nl~~-~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 356 ---SK-ELLASGGTGEVYVWNLRQ-NSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred ---Cc-EEEEEcCCceEEEEecCC-cceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 55 788888899999999998 678887775 3444 5667789999999999999999999764
No 177
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.1e-18 Score=131.94 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=171.5
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEe-eecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
....|.+|.+.|..+.|+..|..|++|+.|..|.+||...++....+. +|. ..|..-.|.|..+...+++++.||.+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~--~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC--NNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc--cchhhhhccCCCCCcCceeccccCce
Confidence 456788999999999999999999999999999999999888777765 455 44888889997677899999999999
Q ss_pred EEEECCCCCCCCCCc-cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC--CC-C---C---cccCC
Q 022870 89 KCWDIENGGLSSNPS-LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL--CD-S---K---DDVPA 158 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~---~~~~~ 158 (291)
++=.+.......... ..-+....+.....+............+....++++.......... .+ . . ++.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 988776544332111 1111222222222222111111222222333344433322111110 11 1 1 78889
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCccee------eEecccccC--------------------------------------
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAERC------TRLHQNSCG-------------------------------------- 194 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~~~------~~~~~~~~~-------------------------------------- 194 (291)
...+.+++.| .|..+++||.+.-... .++....+.
T Consensus 292 ~nt~~faVgG-~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 292 RNTNEFAVGG-SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCccccccCC-hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 9988888655 5899999998642111 111000000
Q ss_pred ---------------CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE
Q 022870 195 ---------------GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS 259 (291)
Q Consensus 195 ---------------~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 259 (291)
...||.... .+-.+..|-|. .+ |+++|+.-|.|.||+-.+ ++.++.+.+....|+||.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~--TVKgVNFfGPr---sE-yVvSGSDCGhIFiW~K~t-~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSR--TVKGVNFFGPR---SE-YVVSGSDCGHIFIWDKKT-GEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred CCCCCCcchhhccchhhccccccc--ccceeeeccCc---cc-eEEecCccceEEEEecch-hHHHHHhhcccceEeccC
Confidence 001221111 12333334444 33 899999999999999988 899999988777999999
Q ss_pred eecCCCeeEEecCCCeEEEEEcCC
Q 022870 260 IDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
-+|--.+||+++-|.-|+||...+
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred CCCCCchhhccCCccceeeecCCc
Confidence 999999999999999999998743
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-17 Score=126.86 Aligned_cols=255 Identities=13% Similarity=0.124 Sum_probs=165.6
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
+.+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+++.. .+|.+...|.|++|.. ....+++|+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~--~N~~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDL--ENRFLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEcc--CCeeEecCC
Confidence 3456789999999999999999999999999999999864 344443 3444446699999998 778999999
Q ss_pred CCCeEEEEECCCCCCCCCCccccccc--eEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC-----cc
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTN--SYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK-----DD 155 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~ 155 (291)
.+++|.+.|+++.+.+. ++..... .+......+. ............+.+|+.+... .....+..... +.
T Consensus 125 ~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CcceeEeeecccceeee--eecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 99999999999876533 2221111 2222222222 2233344556667778776655 22222222222 78
Q ss_pred cCCCCCcEEEEecCCcCeEEEEeCCCccee-eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
|+|..+.++++..+ .+-+-+||.+..+.. ..... +.+.+.... .-+++. |+|++ . .+++--....-.
T Consensus 202 F~P~~P~Li~~~~~-~~G~~~~D~R~~~~~~~~~~~-----~~~L~~~~~-~~M~~~-~~~~G---~-Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 202 FHPETPALILVNSE-TGGPNVFDRRMQARPVYQRSM-----FKGLPQENT-EWMGSL-WSPSG---N-QFMSIRRGKCPL 269 (609)
T ss_pred ecCCCceeEEeccc-cCCCCceeeccccchHHhhhc-----cccCcccch-hhhhee-eCCCC---C-eehhhhccCCCE
Confidence 99999999886555 577999999876432 11110 001111111 224454 99984 4 565555555566
Q ss_pred EEEccCCCCceeecccc------ccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 235 VWDIRNPGIPLTAMKVH------LEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
+||+-+...++..+... ...+.+++|-.+.. +++||.+-.|++|.+..
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPR 323 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCC
Confidence 78887633444444311 23577888977655 89999999999999853
No 179
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.4e-17 Score=129.05 Aligned_cols=216 Identities=15% Similarity=0.214 Sum_probs=158.8
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d 85 (291)
...++...++.-.+.|++++.+|.+..++.|+.||.+..++...++....-......+.|.+++|+| ++..+++|+.|
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~--~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP--TGTKIAGGSID 175 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC--CccEEEecccC
Confidence 3446677777788999999999999999999999988888887776655433333335699999999 88899999999
Q ss_pred CeEEEEECCCCCCCCCCccccccce----EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870 86 GTVKCWDIENGGLSSNPSLTIKTNS----YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (291)
Q Consensus 86 g~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
|.|++||...+.... +.+.+... ...+.++. .|-.++
T Consensus 176 g~Iriwd~~~~~t~~--~~~~~~d~l~k~~~~iVWSv------------------------------------~~Lrd~- 216 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLH--IITMQLDRLSKREPTIVWSV------------------------------------LFLRDS- 216 (691)
T ss_pred ceEEEEEcCCCceEE--EeeecccccccCCceEEEEE------------------------------------EEeecC-
Confidence 999999999876432 11111110 11222222 233343
Q ss_pred cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
. ++ +|+.-|+|.+||...+..++.+. .| ...+.+++ -.+++. ++++++.|+.|.-|...+.
T Consensus 217 t-I~-sgDS~G~V~FWd~~~gTLiqS~~--------~h----~adVl~La-v~~~~d----~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 217 T-IA-SGDSAGTVTFWDSIFGTLIQSHS--------CH----DADVLALA-VADNED----RVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred c-EE-EecCCceEEEEcccCcchhhhhh--------hh----hcceeEEE-EcCCCC----eEEEccCCCceEEEEecCC
Confidence 2 33 78888999999999999888877 44 44566665 666532 8999999999999988763
Q ss_pred CC---ceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 242 GI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 242 ~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.. .......|...|.+++..++ .+++|+.|..+.+-..+.
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 33 23345578889999999888 899999999998876655
No 180
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=7.8e-17 Score=123.94 Aligned_cols=255 Identities=13% Similarity=0.160 Sum_probs=169.2
Q ss_pred CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
.-+..+..|..+|.+|.|+| +...+++.++||+|++-|++.......+........+.++.|+. +...++.+..=|.
T Consensus 225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~ 302 (498)
T KOG4328|consen 225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGN 302 (498)
T ss_pred CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC--CCccEEEeecccc
Confidence 34667888999999999999 66789999999999999998764332222222224477888888 6677777777789
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc---cCCCCCC----cccCCCC
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DSLCDSK----DDVPAEG 160 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~ 160 (291)
..+||++++..... ...++........+.+................+|+++..+.... ....|.. ..|+|.+
T Consensus 303 f~~iD~R~~~s~~~-~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 303 FNVIDLRTDGSEYE-NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred eEEEEeecCCccch-hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 99999998865322 22333334444444444444444555556677888876654332 2333443 8899999
Q ss_pred CcEEEEecCCcCeEEEEeCC----CcceeeEecccccCCCCCCCCCccee--eeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 161 PKYMAVAGEQLSEVEIWDLN----TAERCTRLHQNSCGGSPNFSSKGRGM--CMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
..++ +.+.|..|+|||.. .-.+...+. |....... .... +|.|+.. ++++|..-..|-
T Consensus 382 gtl~--TT~~D~~IRv~dss~~sa~~~p~~~I~---------Hn~~t~RwlT~fKA-~W~P~~~----li~vg~~~r~ID 445 (498)
T KOG4328|consen 382 GTLL--TTCQDNEIRVFDSSCISAKDEPLGTIP---------HNNRTGRWLTPFKA-AWDPDYN----LIVVGRYPRPID 445 (498)
T ss_pred CceE--eeccCCceEEeecccccccCCccceee---------ccCcccccccchhh-eeCCCcc----EEEEeccCccee
Confidence 8854 55569999999984 333344443 22211111 1222 3999744 899999999999
Q ss_pred EEEccCCCCceeecccccc-ceeEE-EeecCCCeeEE-ecCCCeEEEEEcCC
Q 022870 235 VWDIRNPGIPLTAMKVHLE-PVLCL-SIDESCNGGIS-GGADQKIVLYNLDH 283 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h~~-~v~~~-~~~~~~~~l~s-~s~dg~i~vw~~~~ 283 (291)
|+|-.. ++.+..+..... .|.++ .|+|-+..+++ ++.-|.|+||.-..
T Consensus 446 v~~~~~-~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 446 VFDGNG-GQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred EEcCCC-CEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 999886 776777654332 45554 67998884554 45678999997554
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-16 Score=135.54 Aligned_cols=226 Identities=16% Similarity=0.281 Sum_probs=153.1
Q ss_pred CceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-------eEEEEEeeecCCcceEEEEEeecCCCCeEE
Q 022870 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 80 (291)
..+..|..|+..|..++.++ ++.+++||+.||+||+||..+- +...++.... .++.++...+ .++.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~--sr~~~vt~~~--~~~~~A 1114 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG--SRVEKVTMCG--NGDQFA 1114 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC--CceEEEEecc--CCCeEE
Confidence 45778888999999999987 4589999999999999997641 1222232223 5599999999 889999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCcc--ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCC
Q 022870 81 SQGRDGTVKCWDIENGGLSSNPSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (291)
Q Consensus 81 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (291)
.++.||.|++.+++.......... .........+..+. .+|..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-----------------------------------~a~~~ 1159 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-----------------------------------HAFTA 1159 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-----------------------------------ecccc
Confidence 999999999999986322110000 00000000000000 11222
Q ss_pred CCCc-EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870 159 EGPK-YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (291)
Q Consensus 159 ~~~~-~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (291)
.... .++ .+...+.|..||+++......++. ....+.+++++ .+|.+ . .++.|+..|.+.+||
T Consensus 1160 ~~~S~~lv-y~T~~~~iv~~D~r~~~~~w~lk~----------~~~hG~vTSi~-idp~~---~-WlviGts~G~l~lWD 1223 (1431)
T KOG1240|consen 1160 IVQSHVLV-YATDLSRIVSWDTRMRHDAWRLKN----------QLRHGLVTSIV-IDPWC---N-WLVIGTSRGQLVLWD 1223 (1431)
T ss_pred cccceeEE-EEEeccceEEecchhhhhHHhhhc----------CccccceeEEE-ecCCc---e-EEEEecCCceEEEEE
Confidence 2222 333 344568899999999887776663 22467888887 89874 3 999999999999999
Q ss_pred ccCCCCceeecc-ccccceeEEEeecCC---CeeEEec--CCCeEEEEEcCCCceeeee
Q 022870 238 IRNPGIPLTAMK-VHLEPVLCLSIDESC---NGGISGG--ADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 238 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~---~~l~s~s--~dg~i~vw~~~~~~~~~~~ 290 (291)
+|= +.++.++. ++..++..++.+|-. ...++++ ..+.|.+|++.+|..-+++
T Consensus 1224 LRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1224 LRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred eec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 996 77777765 455788888775532 3444444 5788999999999665544
No 182
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2e-17 Score=131.23 Aligned_cols=202 Identities=18% Similarity=0.237 Sum_probs=152.8
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
+..-.|...|+.+.|+..|.||++...+ ..|.|+++.......-|+...+. |.++.|+| ...+|+.++. ..|
T Consensus 515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~--vq~v~FHP--s~p~lfVaTq-~~v 589 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL--VQRVKFHP--SKPYLFVATQ-RSV 589 (733)
T ss_pred EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCc--eeEEEecC--CCceEEEEec-cce
Confidence 3444589999999999999999987653 56899999877666556544544 99999999 6678888776 589
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++||+....++. .+......... ++.+|.|.+++ .|
T Consensus 590 RiYdL~kqelvK----kL~tg~kwiS~--------------------------------------msihp~GDnli--~g 625 (733)
T KOG0650|consen 590 RIYDLSKQELVK----KLLTGSKWISS--------------------------------------MSIHPNGDNLI--LG 625 (733)
T ss_pred EEEehhHHHHHH----HHhcCCeeeee--------------------------------------eeecCCCCeEE--Ee
Confidence 999998765433 33333222221 55889999988 57
Q ss_pred CCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc------C-
Q 022870 169 EQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR------N- 240 (291)
Q Consensus 169 ~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~------~- 240 (291)
+.|+.+..||+.-. ++.+++. -| ...+.+++ |++.-+ ++++|+.||.+.|+.-. .
T Consensus 626 s~d~k~~WfDldlsskPyk~lr--------~H----~~avr~Va-~H~ryP----Lfas~sdDgtv~Vfhg~VY~Dl~qn 688 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLR--------LH----EKAVRSVA-FHKRYP----LFASGSDDGTVIVFHGMVYNDLLQN 688 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhh--------hh----hhhhhhhh-hccccc----eeeeecCCCcEEEEeeeeehhhhcC
Confidence 78999999999855 4555555 44 33556665 998744 89999999999998532 1
Q ss_pred C-CCceeeccccccc----eeEEEeecCCCeeEEecCCCeEEEE
Q 022870 241 P-GIPLTAMKVHLEP----VLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 241 ~-~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
+ -.++..+++|... |..+.|+|...+|++++.||+|++|
T Consensus 689 pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 689 PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 0 1367889999776 8999999999999999999999998
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.1e-16 Score=134.83 Aligned_cols=220 Identities=18% Similarity=0.265 Sum_probs=151.0
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
..+-..+.|+|-...++++...-.|++||.+.++++..+..+.. ...|+.+.+....|..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 34567788999777888888778999999999999888765432 24699999987666679999999999999975433
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 176 (291)
.... ......+....... ....+.+.. +.|.-...++++ +|. -..|+|
T Consensus 1144 ~~~~---------~eLVTaw~~Ls~~~---~~~r~~~~v------------------~dWqQ~~G~Ll~-tGd-~r~IRI 1191 (1387)
T KOG1517|consen 1144 KWKK---------PELVTAWSSLSDQL---PGARGTGLV------------------VDWQQQSGHLLV-TGD-VRSIRI 1191 (1387)
T ss_pred ccCC---------ceeEEeeccccccC---ccCCCCCee------------------eehhhhCCeEEe-cCC-eeEEEE
Confidence 2100 00001111000000 000000000 446555556554 564 589999
Q ss_pred EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC--ceeeccccccc
Q 022870 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP 254 (291)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~h~~~ 254 (291)
||......+..+.. + ....++++ +++...|. .+++|..||.|++||.+.... .+...+.|++.
T Consensus 1192 WDa~~E~~~~diP~-------~----s~t~vTaL---S~~~~~gn-~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPY-------G----SSTLVTAL---SADLVHGN-IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred EecccceeEeeccc-------C----CCccceee---cccccCCc-eEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 99998888877763 1 23344444 44333345 999999999999999987433 67778889887
Q ss_pred --eeEEEeecCCCe-eEEecCCCeEEEEEcCCC
Q 022870 255 --VLCLSIDESCNG-GISGGADQKIVLYNLDHS 284 (291)
Q Consensus 255 --v~~~~~~~~~~~-l~s~s~dg~i~vw~~~~~ 284 (291)
|..+.+.++|.. |++|+.||.|++||++..
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 999999776655 999999999999999984
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.5e-15 Score=114.06 Aligned_cols=198 Identities=14% Similarity=0.243 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 21 VTDVCFHQTKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
|--+-|+.. ++|..+.+ ..+++.+++.+..+..+.-. .+|.++.++. ++|+++-++ .|+|||+++.+.
T Consensus 49 IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr----~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 49 IVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNR----KRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEcc----ceEEEEEcc-cEEEEeccccee
Confidence 444555544 44443333 45888998887777665543 4599999988 566666665 499999999887
Q ss_pred CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
+.. +.+...++...++++ +++.+.++..-.....|.|.+||
T Consensus 119 LhT-I~t~~~n~~gl~AlS--------------------------------------~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 119 LHT-IETTPPNPKGLCALS--------------------------------------PNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred ehh-hhccCCCccceEeec--------------------------------------cCCCCceEEecCCCCCceEEEEE
Confidence 652 112222233333322 33344444443334468899999
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc-EEEEEccCCCCceeeccccc--cce
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVHL--EPV 255 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h~--~~v 255 (291)
..+-+++..+. .| .+.+-+++ |+|+ |. +||++++.|+ |||+.+.+ ++.+.+|+-.. ..|
T Consensus 160 ~~nl~~v~~I~--------aH----~~~lAala-fs~~---G~-llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~I 221 (391)
T KOG2110|consen 160 TINLQPVNTIN--------AH----KGPLAALA-FSPD---GT-LLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSI 221 (391)
T ss_pred cccceeeeEEE--------ec----CCceeEEE-ECCC---CC-EEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEE
Confidence 99999999888 66 55677776 9998 54 9999999986 79999998 88888887432 468
Q ss_pred eEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 256 LCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
.+++|++++++|++.|..++|++|.++...
T Consensus 222 ySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 899999999999999999999999997643
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5e-16 Score=110.48 Aligned_cols=198 Identities=16% Similarity=0.200 Sum_probs=135.3
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
-.|++|-..|..+-+++++.|+.+.-||+++|+..+++++|..- |.++.--. ....+++|++||++|+||.++.+.
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY--vH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY--VHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce--eeeeeecc--cCcceeecCCCccEEEEeccccce
Confidence 46899999997666777779999999999999999999999955 99998855 457899999999999999999886
Q ss_pred CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
+. .+.......+ ..+....-. .++.-+...++ +|. ...+.+|.
T Consensus 191 v~----~ie~yk~~~~-lRp~~g~wi-----------------------------gala~~edWlv--CGg-Gp~lslwh 233 (325)
T KOG0649|consen 191 VS----MIEPYKNPNL-LRPDWGKWI-----------------------------GALAVNEDWLV--CGG-GPKLSLWH 233 (325)
T ss_pred eE----EeccccChhh-cCcccCcee-----------------------------EEEeccCceEE--ecC-CCceeEEe
Confidence 54 2211111000 000000000 22333444433 555 47899999
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (291)
+++.++...++. .+.+.-+. |..+ .++++++.+.|.-|.+. +..-......+...++.
T Consensus 234 Lrsse~t~vfpi-------------pa~v~~v~-F~~d------~vl~~G~g~~v~~~~l~--Gvl~a~ip~~s~~c~s~ 291 (325)
T KOG0649|consen 234 LRSSESTCVFPI-------------PARVHLVD-FVDD------CVLIGGEGNHVQSYTLN--GVLQANIPVESTACYSA 291 (325)
T ss_pred ccCCCceEEEec-------------ccceeEee-eecc------eEEEeccccceeeeeec--cEEEEeccCCccceeee
Confidence 999999888873 33444444 7755 78899988999999887 55555555545556667
Q ss_pred EeecC-CCeeEEecCCCeEEEE
Q 022870 259 SIDES-CNGGISGGADQKIVLY 279 (291)
Q Consensus 259 ~~~~~-~~~l~s~s~dg~i~vw 279 (291)
.|+.+ -++|-.++..+.+.|+
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccCCceEEEEecccceeeeee
Confidence 77322 3455555666667665
No 186
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=3.3e-16 Score=115.51 Aligned_cols=215 Identities=13% Similarity=0.170 Sum_probs=157.8
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC---eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..+.--.++|+|.+|++|+..+|.+.....|.||..... +..++++.|... |+.+.|+| ..+.|++++.|..-
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~--vtgvdWap--~snrIvtcs~drna 79 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKI--VTGVDWAP--KSNRIVTCSHDRNA 79 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcc--eeEEeecC--CCCceeEccCCCCc
Confidence 344445689999999999999999999999999987654 467788888855 99999999 88999999999999
Q ss_pred EEEECC-CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 89 KCWDIE-NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 89 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
++|... .++....+ .-+..+....+ +.|+|.++.+. .
T Consensus 80 yVw~~~~~~~Wkptl-vLlRiNrAAt~---------------------------------------V~WsP~enkFA--V 117 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTL-VLLRINRAATC---------------------------------------VKWSPKENKFA--V 117 (361)
T ss_pred cccccCCCCeeccce-eEEEeccceee---------------------------------------EeecCcCceEE--e
Confidence 999984 44332211 11111222222 55999986554 4
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC-----C-
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-----P- 241 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-----~- 241 (291)
|+....|.+|-.+....--.-+ .-..+++..+.++. |+|++- .|++|+.|+..||+..-- .
T Consensus 118 gSgar~isVcy~E~ENdWWVsK--------hikkPirStv~sld-WhpnnV----LlaaGs~D~k~rVfSayIK~Vdekp 184 (361)
T KOG1523|consen 118 GSGARLISVCYYEQENDWWVSK--------HIKKPIRSTVTSLD-WHPNNV----LLAAGSTDGKCRVFSAYIKGVDEKP 184 (361)
T ss_pred ccCccEEEEEEEecccceehhh--------hhCCccccceeeee-ccCCcc----eecccccCcceeEEEEeeeccccCC
Confidence 6656889998887654332221 12234577889998 999843 899999999999997531 0
Q ss_pred -----------CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 242 -----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 242 -----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
++.+.++....+.|..+.|+|+|..|+-.+.|..+.+=|.....
T Consensus 185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 12234444456799999999999999999999999999887664
No 187
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=4e-18 Score=131.29 Aligned_cols=201 Identities=16% Similarity=0.188 Sum_probs=155.7
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
-.-+.+.|+.+|..|+.|+..|.|..+|..++++...+... +.|.++.|.. +..++++ .....+.|||-..-++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH--neq~~AV-AQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH--NEQFFAV-AQKKYVYVYDNNGTEL 203 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc--chHHHHh-hhhceEEEecCCCcEE
Confidence 34577899999999999999999999999999998887765 4599999988 6455555 4557899999765432
Q ss_pred CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
++......... +.|-|.. ++++ +++..|.++--|
T Consensus 204 --------HClk~~~~v~r------------------------------------LeFLPyH-fLL~-~~~~~G~L~Y~D 237 (545)
T KOG1272|consen 204 --------HCLKRHIRVAR------------------------------------LEFLPYH-FLLV-AASEAGFLKYQD 237 (545)
T ss_pred --------eehhhcCchhh------------------------------------hcccchh-heee-ecccCCceEEEe
Confidence 11111111000 4466654 4444 666789999999
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEE
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 258 (291)
+.+|+.+..+.. ..+....+. -+|... .+-+|..+|+|.+|.... ..++..+..|.++|.+|
T Consensus 238 VS~GklVa~~~t------------~~G~~~vm~-qNP~Na----Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 238 VSTGKLVASIRT------------GAGRTDVMK-QNPYNA----VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSI 299 (545)
T ss_pred echhhhhHHHHc------------cCCccchhh-cCCccc----eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceE
Confidence 999999888773 133344444 777643 889999999999999998 88999999999999999
Q ss_pred EeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 259 SIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
+++++|+|+||.+.|..++|||++....+++
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccce
Confidence 9999999999999999999999998776654
No 188
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.1e-14 Score=119.92 Aligned_cols=250 Identities=22% Similarity=0.386 Sum_probs=171.2
Q ss_pred EecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEE-eecCCCC-eEEEEeC-CCeE
Q 022870 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVAT-GPSIGLN-KVISQGR-DGTV 88 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~-~~~~~~~-~l~s~~~-dg~i 88 (291)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+ ++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSP--DGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECC--CcceEEeccCCCCccE
Confidence 466899999999999999999999999999999998876 6666666432 24777777 66 766 5555444 9999
Q ss_pred EEEECCC-CCCCCCCccccccceEEEEEeecccCccceecc-CCCCceeeecccCccccccCCCCCC----cccCCCCCc
Q 022870 89 KCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ-ANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPK 162 (291)
Q Consensus 89 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (291)
.+||... ..... ....+........+..... ...... .......|+....... ..+.+|.. ++|+|++..
T Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIR--TLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL-STLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEE--EEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE-EeeccCCCceEEEEEcCCcce
Confidence 9999987 32211 1222222333333333333 111122 2455666666552222 22222433 888888873
Q ss_pred EEEEecCCcCeEEEEeCCCcceee-EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
+++ +++.|+.+++||...+.... .+. +|.... .. . |+|++ . ++++++.|+.+++||++..
T Consensus 213 ~~~-~~~~d~~i~~wd~~~~~~~~~~~~--------~~~~~~-~~----~-~~~~~---~-~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 213 LIA-SGSSDGTIRLWDLSTGKLLRSTLS--------GHSDSV-VS----S-FSPDG---S-LLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred EEE-EecCCCcEEEEECCCCcEEeeecC--------CCCcce-eE----e-ECCCC---C-EEEEecCCCcEEEeeecCC
Confidence 443 55779999999998777766 455 553321 11 3 99884 3 7889999999999999974
Q ss_pred CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
...+..+.+|...|.++.|+|++..+++++.|+.+++|+........
T Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 44344457788999999999988888889999999999998876554
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=2.5e-16 Score=123.65 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=147.1
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCeEEEEE--eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccc
Q 022870 28 QTKPILFAGTTGGELRIWDTVQHRTVSSS--WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT 105 (291)
Q Consensus 28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 105 (291)
+.+.-++.|-.-|.|.+.|....+..+.+ ..+-....|+|+.|.|- +...++.+-.+|.+.+||.+-..-...|...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45667778888888988886542221111 11222245999999995 3367778888999999987533222222222
Q ss_pred cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCccee
Q 022870 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~ 185 (291)
............... -........|.+..... ...+|+|||+++. +-+.||.+||||..+.+.+
T Consensus 262 ~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~i--------n~f~FS~DG~~LA--~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKS------KKTRNPVARWHIGEGSI--------NEFAFSPDGKYLA--TVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred ccCCCCeeEEeeeec------cccCCccceeEeccccc--------cceeEcCCCceEE--EEecCceEEEeeccHHHHH
Confidence 211111111000000 00001111222211111 1178999998765 4457999999999998887
Q ss_pred eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeec---
Q 022870 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE--- 262 (291)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~--- 262 (291)
..++. .-+-..+++ |+|| |+ ||++|++|--|.||.+.. ++.+..=++|..+|+.++|+|
T Consensus 326 g~mkS------------YFGGLLCvc-WSPD---GK-yIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt 387 (636)
T KOG2394|consen 326 GVMKS------------YFGGLLCVC-WSPD---GK-YIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTT 387 (636)
T ss_pred HHHHh------------hccceEEEE-EcCC---cc-EEEecCCcceEEEEEecc-ceEEEeccccccceeeEeeccccc
Confidence 76663 245567786 9999 55 999999999999999998 899999999999999999982
Q ss_pred ---------------------------------------------CCCeeEEecCCCeEEEEEcCCCceee
Q 022870 263 ---------------------------------------------SCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 263 ---------------------------------------------~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
..-.+.+.+.|-++.+||+....+.+
T Consensus 388 ~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 388 STEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 11246788899999999998766543
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=136.74 Aligned_cols=246 Identities=17% Similarity=0.238 Sum_probs=168.7
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
++.|.||...|+|..|...|.++++|+.|..|+||..+++.++....+|... |+.++.+. +..++++++.|..|++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d--itdlavs~--~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD--ITDLAVSS--NNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc--cchhccch--hhhhhhhcccCceEEE
Confidence 4567899999999999999999999999999999999999999999999976 99999998 6678889999999999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-Cc-ccccc---------------------
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GE-TVDTD--------------------- 147 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--------------------- 147 (291)
|.+..+..+. ++..+........+++.. .....+...+|+.+- .. .....
T Consensus 259 Wrl~~~~pvs--vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVS--VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EecCCCchHH--HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 9999886544 444444444444444333 223333344444330 00 00000
Q ss_pred CCC--------CCC--cccCCCCCcEEEEecC-----------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee
Q 022870 148 SLC--------DSK--DDVPAEGPKYMAVAGE-----------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM 206 (291)
Q Consensus 148 ~~~--------~~~--~~~~~~~~~~~~~~g~-----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (291)
..+ |.. +++.... +++++++ .+-.+.+|++.++.....+. +|.. .
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd----~ 397 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSD----E 397 (1113)
T ss_pred ccccCCcccccchhhHhhhhccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------cccc----c
Confidence 000 000 2222111 1222222 34557788888887776666 6644 3
Q ss_pred eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
.+.+. ++|-.+ + ...+++.||.+.|||+-. +.+++........+..-.|+++|..++....-|.+.|.....++-
T Consensus 398 ~yvLd-~Hpfn~--r-i~msag~dgst~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 398 VYVLD-VHPFNP--R-IAMSAGYDGSTIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeeee-ecCCCc--H-hhhhccCCCceEeeeccc-CCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 44454 777632 2 678899999999999988 777766543355667779999999988888889999988765543
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=7.5e-15 Score=120.82 Aligned_cols=211 Identities=26% Similarity=0.501 Sum_probs=152.8
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCC-eEEEEeCCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg 86 (291)
.....+.+|...|.+++|+|++..+++++. |+.+++|+...+..+..+..|... |.+++|+| ++. .+++++.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~~~~~~~~d~ 221 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP--VSSLAFSP--DGGLLIASGSSDG 221 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc--eEEEEEcC--CcceEEEEecCCC
Confidence 556778899999999999999998888886 999999999988888888887754 99999998 777 555569999
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
.|++||...+..... .+..+..... ..|+|++. +++
T Consensus 222 ~i~~wd~~~~~~~~~---~~~~~~~~~~---------------------------------------~~~~~~~~-~~~- 257 (466)
T COG2319 222 TIRLWDLSTGKLLRS---TLSGHSDSVV---------------------------------------SSFSPDGS-LLA- 257 (466)
T ss_pred cEEEEECCCCcEEee---ecCCCCccee---------------------------------------EeECCCCC-EEE-
Confidence 999998774433210 0111100000 12888884 444
Q ss_pred ecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
+++.|+.+++||++.... ...+. +| ...+.++. |.|+ +. .+++++.|+.+.+||..+ ....
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~-~~~~---~~-~~~~~~~d~~~~~~~~~~-~~~~ 319 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLS--------GH----SSSVLSVA-FSPD---GK-LLASGSSDGTVRLWDLET-GKLL 319 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEe--------cC----CccEEEEE-ECCC---CC-EEEEeeCCCcEEEEEcCC-CceE
Confidence 677799999999997765 33332 44 33455565 9995 33 666688889999999887 5544
Q ss_pred eecc--ccccceeEEEeecCCCeeEEe-cCCCeEEEEEcCCCc
Q 022870 246 TAMK--VHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHST 285 (291)
Q Consensus 246 ~~~~--~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~~~ 285 (291)
.... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 4444 788889999993332455555 688999999998876
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.8e-15 Score=124.24 Aligned_cols=207 Identities=10% Similarity=0.060 Sum_probs=129.3
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG 86 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg 86 (291)
.+.+..|...+...+|+|||+.|+..+.+ ..|++||+.+++.... .... .....++|+| ||+.|+.++ .+|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--g~~~~~~wSP--DG~~La~~~~~~g 270 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--GHNGAPAFSP--DGSRLAFASSKDG 270 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--CccCceeECC--CCCEEEEEEecCC
Confidence 45567788899999999999999887643 4799999987754322 1111 1245789999 999888654 688
Q ss_pred eEEEE--ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 87 TVKCW--DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 87 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.+.|| |+.+++.. .+....... ...+|+|+|+.++
T Consensus 271 ~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~~i~ 307 (429)
T PRK01742 271 VLNIYVMGANGGTPS-----QLTSGAGNN--------------------------------------TEPSWSPDGQSIL 307 (429)
T ss_pred cEEEEEEECCCCCeE-----eeccCCCCc--------------------------------------CCEEECCCCCEEE
Confidence 76665 55444321 111100000 0055999998776
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
++ +..++...||++.......... .+. + .... |+|+ |+ .|+.++.++ +.+||+.+ +..
T Consensus 308 f~-s~~~g~~~I~~~~~~~~~~~~l--------~~~----~--~~~~-~SpD---G~-~ia~~~~~~-i~~~Dl~~-g~~ 365 (429)
T PRK01742 308 FT-SDRSGSPQVYRMSASGGGASLV--------GGR----G--YSAQ-ISAD---GK-TLVMINGDN-VVKQDLTS-GST 365 (429)
T ss_pred EE-ECCCCCceEEEEECCCCCeEEe--------cCC----C--CCcc-CCCC---CC-EEEEEcCCC-EEEEECCC-CCe
Confidence 64 4456788888765432211111 111 1 2344 9998 54 676666654 66699987 543
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC--CCceeee
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--HSTVSHC 289 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~--~~~~~~~ 289 (291)
......+ ...++.|+|+|++|+.++.++.+.+|.+. +++..+.
T Consensus 366 ~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 366 EVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred EEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 3222222 23567899999999999999988888753 4554443
No 193
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=2.7e-15 Score=111.87 Aligned_cols=261 Identities=15% Similarity=0.198 Sum_probs=165.9
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeeecCC----------cceEEEEEeecCCCCeEEEE
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~ 82 (291)
.+-|.++.|...|.+||||..+|.|.++.-+... ....++.|... +.|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999754322 22334444321 45889999984444577888
Q ss_pred eCCCeEEEEECCCCCCCC------------------CCccc--------------cccceEEEEEeecccCccceeccCC
Q 022870 83 GRDGTVKCWDIENGGLSS------------------NPSLT--------------IKTNSYHFCKLSLVKEPYANAKQAN 130 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~------------------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (291)
..|.+|++|.+....... .|+.. .+.+..+...++...........+.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 899999999986543221 01110 0122333344444444444455555
Q ss_pred CCceeeecccCccc---cccCCCCCC--------cccCCCCCcEEEEecCCcCeEEEEeCCCccee----eEecccccCC
Q 022870 131 EPKDCYEREVGETV---DTDSLCDSK--------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGG 195 (291)
Q Consensus 131 ~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~----~~~~~~~~~~ 195 (291)
.....|.+.....- ....+..-. ..|+|..-++++-+.+ .|+|++-|+|..... ..+..+..+.
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS-KGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS-KGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC-CCcEEEeechhhhhhcchhhhhccccCCc
Confidence 55666655433211 111111100 6799998888887666 699999999965432 2222222222
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc------------ce---eEEEe
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE------------PV---LCLSI 260 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~------------~v---~~~~~ 260 (291)
.+.+..+.-..+..+. |+++ |+ ++++-.. -+|++||+....+++...+-|.. .| ..++|
T Consensus 264 ~rsffseiIsSISDvK-Fs~s---Gr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVK-FSHS---GR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred chhhHHHHhhhhhceE-EccC---Cc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 2222233445677787 9988 65 7766543 58999999665788888776642 22 46789
Q ss_pred ecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 261 DESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 261 ~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
+.++.+++|||..+.+++++...|.
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cCCcceEecccccceEEEecCCCCc
Confidence 9999999999999999999976554
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=1.2e-14 Score=117.59 Aligned_cols=210 Identities=12% Similarity=0.123 Sum_probs=129.3
Q ss_pred CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE--------EEEe-------------------
Q 022870 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--------SSSW------------------- 57 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--------~~~~------------------- 57 (291)
|..+..+.+|+||++.|+|++|+.||+.+|+|+.|..|.+|+..-.-.+ ..+.
T Consensus 40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW 119 (1081)
T KOG1538|consen 40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLW 119 (1081)
T ss_pred CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence 3455678899999999999999999999999999999999985422111 1110
Q ss_pred --------eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccc---ccceEEEEEeecccCcc---
Q 022870 58 --------VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI---KTNSYHFCKLSLVKEPY--- 123 (291)
Q Consensus 58 --------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--- 123 (291)
.+.....|.+++|.. ||.+|+.|-.||+|.+=+-...+... +.- ...+.....+++...+.
T Consensus 120 S~~qK~V~K~kss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~gEek~~---I~Rpgg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 120 SPEQKSVSKHKSSSRIICCSWTN--DGQYLALGMFNGTISIRNKNGEEKVK---IERPGGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred ChhhhhHHhhhhheeEEEeeecC--CCcEEEEeccCceEEeecCCCCcceE---EeCCCCCCCCceEEEecCCCCCCccc
Confidence 122223467777777 99999999999999987654332211 111 11122222222222110
Q ss_pred ceec-cCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCC
Q 022870 124 ANAK-QANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (291)
Q Consensus 124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 200 (291)
..+. .-+.....+.+...........+... +.+-++|+++++ |+.|+.+++| .+.|-.+.++..
T Consensus 195 i~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li--GGsdk~L~~f-TR~GvrLGTvg~---------- 261 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL--GGSDKQLSLF-TRDGVRLGTVGE---------- 261 (1081)
T ss_pred eEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE--ccCCCceEEE-eecCeEEeeccc----------
Confidence 1111 11112222222222222122222222 677789988874 4448999999 455655555541
Q ss_pred CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 201 ~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
...+++.+. ..|+ ++ +++.|+.||+|.-|++-
T Consensus 262 --~D~WIWtV~-~~PN---sQ-~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 262 --QDSWIWTVQ-AKPN---SQ-YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred --cceeEEEEE-EccC---Cc-eEEEEEccCeeehhhhH
Confidence 466899998 9998 55 89999999999998864
No 195
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.6e-15 Score=113.55 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=163.8
Q ss_pred CccceeEEEEcCCCC--EEEEecCCCeEEEEeCCCCeEEEEE----eeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 17 h~~~v~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
-...|..++|.-+++ .+...+.|..+..+.++...+...+ ..+....+|..++... ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEE
Confidence 456788888876543 4555557777888877766555443 2233335588887765 68888899999999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccC-C--CCceeeecccCccccccCCCCCC------------cc
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA-N--EPKDCYEREVGETVDTDSLCDSK------------DD 155 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~------------~~ 155 (291)
|..+.+..-..+...+.........-.....+...+... . ....+|++.....+-........ +.
T Consensus 130 ~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred EeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 999865533333444444433322222222222222111 1 23566666555322221111111 56
Q ss_pred cCCCCCcEEEEecCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
|-+.....-++++..-+.+++||++.++ ++..+.. ....+.++. ..|+ |. ++++|..-|.+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~------------~E~~is~~~-l~p~---gn-~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF------------LENPISSTG-LTPS---GN-FIYTGNTKGQLA 272 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEecc------------ccCcceeee-ecCC---Cc-EEEEecccchhh
Confidence 6665222222255566999999999765 4555542 234566665 7777 44 899999999999
Q ss_pred EEEccCCCCceee-ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 235 VWDIRNPGIPLTA-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 235 vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
.||++. ++.... +++-.+.|.+|..+|+.++|+++|-|..+||+|+++.++++.
T Consensus 273 ~FD~r~-~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 273 KFDLRG-GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred eecccC-ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 999998 666655 889999999999999999999999999999999999887765
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=3.5e-15 Score=108.36 Aligned_cols=110 Identities=11% Similarity=0.247 Sum_probs=84.8
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---C
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---D 230 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---d 230 (291)
++|+|+|+.++++.|..++.|.+||++ .+.+..+.. .....+. |+|+ |+ +|++|+. .
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--------------~~~n~i~-wsP~---G~-~l~~~g~~n~~ 124 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--------------QPRNTIS-WSPD---GR-FLVLAGFGNLN 124 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--------------CCceEEE-ECCC---CC-EEEEEEccCCC
Confidence 669999999888888878899999997 556666651 2334565 9998 55 7776653 5
Q ss_pred CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC------CCeEEEEEcCCCce
Q 022870 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTV 286 (291)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~vw~~~~~~~ 286 (291)
|.|.+||.++ .+.+.... | ..++.++|+|+|++|++++. |+.++||++....+
T Consensus 125 G~l~~wd~~~-~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 125 GDLEFWDVRK-KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred cEEEEEECCC-CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 7899999997 67776665 3 34789999999999998874 78899999975543
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=3.5e-16 Score=118.70 Aligned_cols=180 Identities=18% Similarity=0.200 Sum_probs=135.2
Q ss_pred ccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCe---------EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 18 RASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHR---------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 18 ~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
..+|..+.|.++.. .++||+.|..|++|.++.+. .+..+..|..+ |+++.|+| +|++|++|+.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~a--VN~vRf~p--~gelLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRA--VNVVRFSP--DGELLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcce--eEEEEEcC--CcCeeeecCCCce
Confidence 46899999999665 99999999999999876431 23445567755 99999999 9999999999999
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
|.+|....-.. + +. +.-
T Consensus 89 v~lWk~~~~~~---------------------------------------------------------~-~~-d~e---- 105 (434)
T KOG1009|consen 89 VFLWKQGDVRI---------------------------------------------------------F-DA-DTE---- 105 (434)
T ss_pred EEEEEecCcCC---------------------------------------------------------c-cc-cch----
Confidence 99998765110 0 00 000
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
...+. +.......+. +|. ..++.++ |+|++ . ++++|+.|..+++||+.. ++....
T Consensus 106 ~~~~k-------e~w~v~k~lr--------~h~----~diydL~-Ws~d~---~-~l~s~s~dns~~l~Dv~~-G~l~~~ 160 (434)
T KOG1009|consen 106 ADLNK-------EKWVVKKVLR--------GHR----DDIYDLA-WSPDS---N-FLVSGSVDNSVRLWDVHA-GQLLAI 160 (434)
T ss_pred hhhCc-------cceEEEEEec--------ccc----cchhhhh-ccCCC---c-eeeeeeccceEEEEEecc-ceeEee
Confidence 00000 0011122222 442 2455555 99984 4 999999999999999998 999999
Q ss_pred ccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
+..|...|..++|+|-++++++-|.|...+.+.+...+.++.
T Consensus 161 ~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred ccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 999999999999999999999999999888888887766654
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=7.5e-15 Score=110.39 Aligned_cols=203 Identities=12% Similarity=0.179 Sum_probs=137.4
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIEN 95 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~ 95 (291)
...+..+.|+.+...|..|+.|| .++++.+............ ..|..+-|+. .+++..+.+. .+++++++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~--~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEG--VSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCC--eEEEEeeccc----ceeEEEecCCCceEEEEEccc
Confidence 45677788999999999999998 5788876543322211112 3466677776 6776665544 488888876
Q ss_pred CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (291)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 175 (291)
...+.+.. .... ... +.++. +++++ +- ...|+
T Consensus 78 ~~~ICe~~--fpt~---IL~--------------------------------------VrmNr--~RLvV-~L--ee~Iy 109 (391)
T KOG2110|consen 78 KTTICEIF--FPTS---ILA--------------------------------------VRMNR--KRLVV-CL--EESIY 109 (391)
T ss_pred CceEEEEe--cCCc---eEE--------------------------------------EEEcc--ceEEE-EE--cccEE
Confidence 65432111 1100 000 11222 34554 33 34599
Q ss_pred EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe--ecCCCcEEEEEccCCCCceeecccccc
Q 022870 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPGIPLTAMKVHLE 253 (291)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (291)
|||+++.+.+.++.. -+....+. . +++|+.. +. +++- ....|.|.+||..+ -+++..+..|++
T Consensus 110 IydI~~MklLhTI~t--------~~~n~~gl-~---AlS~n~~-n~-ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~ 174 (391)
T KOG2110|consen 110 IYDIKDMKLLHTIET--------TPPNPKGL-C---ALSPNNA-NC-YLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKG 174 (391)
T ss_pred EEecccceeehhhhc--------cCCCccce-E---eeccCCC-Cc-eEEecCCCCCceEEEEEccc-ceeeeEEEecCC
Confidence 999999999988873 11112222 2 4666643 22 5553 23469999999998 899999999999
Q ss_pred ceeEEEeecCCCeeEEecCCCe-EEEEEcCCCceeeee
Q 022870 254 PVLCLSIDESCNGGISGGADQK-IVLYNLDHSTVSHCV 290 (291)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~-i~vw~~~~~~~~~~~ 290 (291)
++-+++|+++|.+|||+|+.|+ |||+.+.+|+.++.+
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 9999999999999999999997 899999999988764
No 199
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.4e-15 Score=109.70 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=112.7
Q ss_pred eecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeee
Q 022870 58 VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE 137 (291)
Q Consensus 58 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
+|. +-|+++.|.+ -|+++++++.|++|+|||.+...-.....-..+.+......
T Consensus 11 ~h~--DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~r---------------------- 64 (361)
T KOG2445|consen 11 GHK--DLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWR---------------------- 64 (361)
T ss_pred CCc--ceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEE----------------------
Confidence 455 4499999999 89999999999999999986554322111122222211111
Q ss_pred cccCccccccCCCCCCccc-CCCCCcEEEEecCCcCeEEEEeCCC---------cceeeEecccccCCCCCCCCCcceee
Q 022870 138 REVGETVDTDSLCDSKDDV-PAEGPKYMAVAGEQLSEVEIWDLNT---------AERCTRLHQNSCGGSPNFSSKGRGMC 207 (291)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (291)
+.| +|.-..++| +++.|+++.||.-.. .....++. ..+..+
T Consensus 65 ----------------V~WAhPEfGqvvA-~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~------------DsrssV 115 (361)
T KOG2445|consen 65 ----------------VVWAHPEFGQVVA-TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV------------DSRSSV 115 (361)
T ss_pred ----------------EEecCccccceEE-EEecCCceeeeeecccccccccceeEEEEEee------------cCCcce
Confidence 222 344445565 667799999997521 11122222 246678
Q ss_pred eeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc-------------------------------------------
Q 022870 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP------------------------------------------- 244 (291)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~------------------------------------------- 244 (291)
+.+. |.|..- |- .|++++.||.+|||+.-++...
T Consensus 116 ~DV~-FaP~hl-GL-klA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~ 192 (361)
T KOG2445|consen 116 TDVK-FAPKHL-GL-KLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSD 192 (361)
T ss_pred eEEE-ecchhc-ce-EEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcc
Confidence 8888 999754 65 8999999999999976542210
Q ss_pred -----------------------eeeccccccceeEEEeecC----CCeeEEecCCCeEEEEEcCC
Q 022870 245 -----------------------LTAMKVHLEPVLCLSIDES----CNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 245 -----------------------~~~~~~h~~~v~~~~~~~~----~~~l~s~s~dg~i~vw~~~~ 283 (291)
+.++.+|..+|++|+|.|+ ..+||+++.|| |+||++..
T Consensus 193 e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 193 EDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 3345578889999999875 45689999999 99999874
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-14 Score=120.72 Aligned_cols=250 Identities=21% Similarity=0.251 Sum_probs=157.0
Q ss_pred ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC-CeEEEEeCCCeEEEEE
Q 022870 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD 92 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd 92 (291)
+-|-...-..-.|++|+++++... +..|+||...++.++..++.|.. +++++.+.|.... .++++++.||.|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a--~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTA--PLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccC--ccceeeecCCCccceEEEEEecCccEEEec
Confidence 444444344456899998887665 46899999999999999999884 4999999985332 4677999999999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccc-ee--------------ccCCCCceeeecccCccccccCC-C---CCC
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA-NA--------------KQANEPKDCYEREVGETVDTDSL-C---DSK 153 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ 153 (291)
...+.+.. .+..... .+...+.+...... .. .........+.+.........+. . +..
T Consensus 89 ~~~~~Llk--t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~ 165 (792)
T KOG1963|consen 89 WSDGELLK--TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS 165 (792)
T ss_pred CCCcEEEE--EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence 99887655 2221111 11111111111100 00 00011111111111111111111 1 122
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
+.+++.|....++- +..+.+|+...+. ....... ....|.. ...+.+ ++|. ++ ++++|..||.|
T Consensus 166 I~~~~~ge~~~i~~---~~~~~~~~v~~~~-~~~~~~~---~~~~Htf----~~t~~~-~spn---~~-~~Aa~d~dGrI 229 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVH---MCKIHIYFVPKHT-KHTSSRD---ITVHHTF----NITCVA-LSPN---ER-YLAAGDSDGRI 229 (792)
T ss_pred EEEcCCceEEEEEE---eeeEEEEEecccc-eeeccch---hhhhhcc----cceeEE-eccc---cc-eEEEeccCCcE
Confidence 77888886655432 4679999988755 1111100 0012322 245565 9998 44 99999999999
Q ss_pred EEEEccC---CCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 234 LVWDIRN---PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 234 ~vwd~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
.+|.--. .......+.-|.+.|++++|+++|.+|.|||..|.+-+|.+.+++
T Consensus 230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred EEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 9996321 123345677899999999999999999999999999999999876
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.4e-15 Score=126.12 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=138.5
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 101 (291)
.-++|.....+|+++|.-..|+|||.....++..+..... ..|+++.-+-. .|+.+++|..||.|++||.+......
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds- 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDS- 1245 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccccc-CCceEEEeecCCceEEeecccCCccc-
Confidence 4467877544666666678999999998888887765543 45777765542 57999999999999999998654321
Q ss_pred CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (291)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~ 181 (291)
.+...+.+........ +.+.+.|-.-++ +|+.||.|++||+|.
T Consensus 1246 ~v~~~R~h~~~~~Iv~------------------------------------~slq~~G~~elv-Sgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVH------------------------------------LSLQRQGLGELV-SGSQDGDIQLLDLRM 1288 (1387)
T ss_pred cceeecccCCccccee------------------------------------EEeecCCCccee-eeccCCeEEEEeccc
Confidence 0111111100000000 335555543233 788999999999998
Q ss_pred cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc-------ccc
Q 022870 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-------LEP 254 (291)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-------~~~ 254 (291)
......+... .|.. ..+..+++. .++..+ .+|+|+. +.|.||++. ++.+..++.+ .+.
T Consensus 1289 ~~~e~~~~iv------~~~~-yGs~lTal~-VH~hap----iiAsGs~-q~ikIy~~~--G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1289 SSKETFLTIV------AHWE-YGSALTALT-VHEHAP----IIASGSA-QLIKIYSLS--GEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred Ccccccceee------eccc-cCccceeee-eccCCC----eeeecCc-ceEEEEecC--hhhhcccccCcccccCcCCC
Confidence 5322222210 1211 112356665 776643 8999988 999999997 5555554433 346
Q ss_pred eeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 255 v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
+.+++|+|-..++|+|+.|..|.||..+.+++
T Consensus 1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred cceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 79999999999999999999999999887654
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.1e-13 Score=102.23 Aligned_cols=179 Identities=15% Similarity=0.281 Sum_probs=129.2
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC-CCCCCCccccccceEEEEEeec
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG-GLSSNPSLTIKTNSYHFCKLSL 118 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
..|.|||=...+++.++... .+|.++.+.+ +.+++.-. +.|.+|...+. +... .+....++...|...+
T Consensus 75 NkviIWDD~k~~~i~el~f~---~~I~~V~l~r----~riVvvl~-~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN---SEIKAVKLRR----DRIVVVLE-NKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCP 144 (346)
T ss_pred ceEEEEecccCcEEEEEEec---cceeeEEEcC----CeEEEEec-CeEEEEEcCCChhhee--eeecccCCCceEeecC
Confidence 57999996667788777654 5599999988 46665554 68999998844 3322 2222222223332222
Q ss_pred ccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcce--eeEecccccCCC
Q 022870 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGS 196 (291)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~ 196 (291)
. .+..+++.-|-.-|.|.|-|+...+. ...+.
T Consensus 145 ~---------------------------------------~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~------- 178 (346)
T KOG2111|consen 145 T---------------------------------------SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN------- 178 (346)
T ss_pred C---------------------------------------CCceEEEcCCCccceEEEEEhhhcCcCCceEEE-------
Confidence 1 23456777788889999999987665 34455
Q ss_pred CCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc-EEEEEccCCCCceeeccc--cccceeEEEeecCCCeeEEecCC
Q 022870 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
+| ...+.+++ .+-+ |. .+|+++..|+ |||||..+ +.++.+++- ..+.|.+|+|+|+..+||.+|+.
T Consensus 179 -AH----~s~Iacv~-Ln~~---Gt-~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 179 -AH----DSDIACVA-LNLQ---GT-LVATASTKGTLIRIFDTED-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred -cc----cCceeEEE-EcCC---cc-EEEEeccCcEEEEEEEcCC-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 56 34556665 7776 55 9999999986 89999999 888888873 24579999999999999999999
Q ss_pred CeEEEEEcCCCc
Q 022870 274 QKIVLYNLDHST 285 (291)
Q Consensus 274 g~i~vw~~~~~~ 285 (291)
|+++|+.++...
T Consensus 248 gTlHiF~l~~~~ 259 (346)
T KOG2111|consen 248 GTLHIFSLRDTE 259 (346)
T ss_pred CeEEEEEeecCC
Confidence 999999987643
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.2e-15 Score=122.47 Aligned_cols=189 Identities=19% Similarity=0.273 Sum_probs=134.8
Q ss_pred ecCCCeEEEEeCCCC-eEEE-EEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC---C--cccccc
Q 022870 36 GTTGGELRIWDTVQH-RTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN---P--SLTIKT 108 (291)
Q Consensus 36 ~~~dg~v~iwd~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~--~~~~~~ 108 (291)
++..|.|-||+++.. ++.. .+.+-.....|+.+.|.|. |..+|+.++.||.|++|.+..+..... | +++++.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 456789999998753 2211 1111111144999999998 558999999999999999987765331 1 111111
Q ss_pred ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~ 188 (291)
..... +.|+|-...+++ +++.|-+|++||+++.+....+
T Consensus 678 eKI~s----------------------------------------lRfHPLAadvLa-~asyd~Ti~lWDl~~~~~~~~l 716 (1012)
T KOG1445|consen 678 EKITS----------------------------------------LRFHPLAADVLA-VASYDSTIELWDLANAKLYSRL 716 (1012)
T ss_pred ceEEE----------------------------------------EEecchhhhHhh-hhhccceeeeeehhhhhhhhee
Confidence 11111 558887777777 4566999999999999988888
Q ss_pred cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCCee
Q 022870 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGG 267 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l 267 (291)
. +|. +.++.++ |+|+ |+ .+++.+.||+|+||..++..+++++-.+-. ..--.|.|.-+|+++
T Consensus 717 ~--------gHt----dqIf~~A-WSpd---Gr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 717 V--------GHT----DQIFGIA-WSPD---GR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV 779 (1012)
T ss_pred c--------cCc----CceeEEE-ECCC---Cc-ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence 7 774 4677776 9999 66 899999999999999998667776655432 234567888889998
Q ss_pred EEecCC----CeEEEEEcCC
Q 022870 268 ISGGAD----QKIVLYNLDH 283 (291)
Q Consensus 268 ~s~s~d----g~i~vw~~~~ 283 (291)
+..+.| .+|.+||.++
T Consensus 780 iv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 780 IVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEecccccchhhhhhhhhhh
Confidence 888776 4578887664
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.3e-15 Score=117.60 Aligned_cols=176 Identities=17% Similarity=0.263 Sum_probs=131.0
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce
Q 022870 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 110 (291)
..|+.++.||.+.+-+ ..++....+..|..+ +.+-.|+| ||.-|+++++||.|++|.-...- .. . -.+...
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A--~~~gRW~~--dGtgLlt~GEDG~iKiWSrsGML-RS--t-l~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAA--ISSGRWSP--DGAGLLTAGEDGVIKIWSRSGML-RS--T-VVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhh--hhhcccCC--CCceeeeecCCceEEEEeccchH-HH--H-HhhcCc
Confidence 4688889999999988 568888888899866 99999999 99999999999999999865321 11 0 111112
Q ss_pred EEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecc
Q 022870 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~ 190 (291)
...| ++|.|+.+.++.+.| +.+.+=.+..+..+-..+
T Consensus 147 ~v~c---------------------------------------~~W~p~S~~vl~c~g---~h~~IKpL~~n~k~i~Wk- 183 (737)
T KOG1524|consen 147 SIRC---------------------------------------ARWAPNSNSIVFCQG---GHISIKPLAANSKIIRWR- 183 (737)
T ss_pred eeEE---------------------------------------EEECCCCCceEEecC---CeEEEeecccccceeEEe-
Confidence 2222 568899888887543 567777777666666666
Q ss_pred cccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEe
Q 022870 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (291)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 270 (291)
+| .+.+.++. |+|... .+++|++|-..+|||.. ++++..-..|+-+|++++|+|+ ..++.+
T Consensus 184 -------AH----DGiiL~~~-W~~~s~----lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 184 -------AH----DGLVLSLS-WSTQSN----IIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred -------cc----CcEEEEee-cCcccc----ceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeee
Confidence 55 67899998 999843 99999999999999987 7777777778888888888877 444555
Q ss_pred cCCCeEEE
Q 022870 271 GADQKIVL 278 (291)
Q Consensus 271 s~dg~i~v 278 (291)
|.+ ++|+
T Consensus 245 S~n-t~R~ 251 (737)
T KOG1524|consen 245 SYN-TARF 251 (737)
T ss_pred eee-eeee
Confidence 432 4443
No 205
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=2.2e-13 Score=108.69 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=151.6
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCC
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG 86 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg 86 (291)
.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++.... ..++++++ ||++++++. .++
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~--DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSP--DGKYVYVANYEPG 100 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE----TTTEEEEEEEETT
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcC--CCCEEEEEecCCC
Confidence 356777775544445578999999999999999999999999999999887643 68999999 999988665 689
Q ss_pred eEEEEECCCCCCCCCCccccccce-------EEE-EEeecccCcc-ceeccCCCCceeeecccCccc-cccCCCCCC---
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNS-------YHF-CKLSLVKEPY-ANAKQANEPKDCYEREVGETV-DTDSLCDSK--- 153 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--- 153 (291)
.+.++|.++.+.+. .+.... ... ........+. ....-........+....... .........
T Consensus 101 ~v~v~D~~tle~v~----~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 101 TVSVIDAETLEPVK----TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp EEEEEETTT--EEE----EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred ceeEecccccccee----ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 99999999876543 222211 111 1112122221 112222333333343333211 111111111
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC--------------------------------CCCC-CC
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--------------------------------GSPN-FS 200 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~--------------------------------~~~~-~~ 200 (291)
..|+|++++++++. ..+..|-++|..+++.+..+.....+ .... |.
T Consensus 177 ~~~dpdgry~~va~-~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d 255 (369)
T PF02239_consen 177 GGFDPDGRYFLVAA-NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHD 255 (369)
T ss_dssp EEE-TTSSEEEEEE-GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-ST
T ss_pred cccCcccceeeecc-cccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccch
Confidence 78999999887643 34678999999887765544211000 0000 00
Q ss_pred CCc---------ceeeeeEEEecCCCCCCceEEEee----cCCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCCe
Q 022870 201 SKG---------RGMCMAVQAYLPSKSQGFVNVLAG----YEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNG 266 (291)
Q Consensus 201 ~~~---------~~~~~~~~~~~p~~~~g~~~l~~g----~~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~ 266 (291)
... .+...-+. -+|+ ++ ++++. ...+.|.++|.++ .+.+..+.... ..+..+.|+++|+.
T Consensus 256 ~~~wkvv~~I~~~G~glFi~-thP~---s~-~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 256 DYAWKVVKTIPTQGGGLFIK-THPD---SR-YVWVDTFLNPDADTVQVIDKKT-LKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp TTBTSEEEEEE-SSSS--EE---TT----S-EEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred hhcCeEEEEEECCCCcceee-cCCC---Cc-cEEeeccCCCCCceEEEEECcC-cceeEEEeccCCCcEeccEECCCCCE
Confidence 000 01112233 4565 44 66666 5568999999998 56666665322 35889999999997
Q ss_pred eEEecC--CCeEEEEEcCCCceeeee
Q 022870 267 GISGGA--DQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 267 l~s~s~--dg~i~vw~~~~~~~~~~~ 290 (291)
+..+.. ++.|.+||..+.+++..+
T Consensus 330 v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCcEEEEEE
Confidence 754443 347999999999988765
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.2e-13 Score=109.97 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=132.5
Q ss_pred EEecCCCeEEEEeCCC-Ce--EEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEEECCC-CCCCCCCcccccc
Q 022870 34 FAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN-GGLSSNPSLTIKT 108 (291)
Q Consensus 34 ~s~~~dg~v~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~ 108 (291)
++...|+.|.+||+.+ ++ .+..+... .....++++| ++++|++++ .++.|.+|+++. ++... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~--~~~~~~ 78 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTF--AAESPL 78 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEE--eeeecC
Confidence 4447789999999964 33 44444432 2367899999 988887654 578999999973 22211 111111
Q ss_pred -ceEEEEEeecccCccceeccCCCCceeeecccCccc---cccCCCCC--C-cccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870 109 -NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV---DTDSLCDS--K-DDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (291)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~ 181 (291)
.......+.+............+....++++..... .....+.. . ++++|+++.+++ +...++.|.+||+.+
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCCCEEEEEEECC
Confidence 112223333333333333334555666766532211 11112211 1 789999987765 566689999999986
Q ss_pred cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC-CCcEEEEEccCC-CC--ceeecccc------
Q 022870 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNP-GI--PLTAMKVH------ 251 (291)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-dg~i~vwd~~~~-~~--~~~~~~~h------ 251 (291)
...+....... .. .........+. |+|+ |+ +++++++ ++.|.+||+... +. .+..+..+
T Consensus 158 ~g~l~~~~~~~-----~~-~~~g~~p~~~~-~~pd---g~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 158 DGHLVAQEPAE-----VT-TVEGAGPRHMV-FHPN---QQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCcccccCCCc-----ee-cCCCCCCceEE-ECCC---CC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 43221110000 00 00011123454 9998 55 6666655 899999999741 22 23333211
Q ss_pred ccceeEEEeecCCCeeEEecC-CCeEEEEEcCCC
Q 022870 252 LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHS 284 (291)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~~ 284 (291)
......+.++|++++|+++.. ++.|.+|+++..
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 123346889999999888754 789999999654
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.64 E-value=6.8e-14 Score=115.04 Aligned_cols=231 Identities=13% Similarity=0.058 Sum_probs=145.4
Q ss_pred CCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC--CCCccccccc--eEEE
Q 022870 39 GGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS--SNPSLTIKTN--SYHF 113 (291)
Q Consensus 39 dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~--~~~~ 113 (291)
++.+.+|++... .....+.. . .+|.++.|+|. +.++++.|..+|+|.+||++..... .........+ +...
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~-~--s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLES-P--SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA 296 (555)
T ss_pred CceEEEEecCCCCCceEEEec-C--CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence 357999999876 33333332 3 55999999996 6689999999999999999987652 1111111222 2222
Q ss_pred EEeecccCc-cceeccCCCCceeeecccCcccccc----CCCC---------CC--cccCCCCCcEEEEecCCcCeEEEE
Q 022870 114 CKLSLVKEP-YANAKQANEPKDCYEREVGETVDTD----SLCD---------SK--DDVPAEGPKYMAVAGEQLSEVEIW 177 (291)
Q Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------~~--~~~~~~~~~~~~~~g~~d~~i~~w 177 (291)
..+.....+ ........+....|+++........ ...| .. ++|.+...+.++ .|+.+|.|.--
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi-VGTe~G~v~~~ 375 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI-VGTEEGKVYKG 375 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE-EEcCCcEEEEE
Confidence 333222222 2333444666677766544331111 1111 11 888888888777 47778988763
Q ss_pred eCCCcce-e-eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870 178 DLNTAER-C-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (291)
Q Consensus 178 d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (291)
+-...+. . ..++.. .+...+.+.+.++. ++|-.. ..+++++ |..+++|.......|+..+..+...|
T Consensus 376 ~r~g~~~~~~~~~~~~------~~~~~h~g~v~~v~-~nPF~~---k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v 444 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGH------STFITHIGPVYAVS-RNPFYP---KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYV 444 (555)
T ss_pred eccCCccccccccccc------ccccccCcceEeee-cCCCcc---ceeeeec-cceeEeccccCCCCcchhhhhcccee
Confidence 3222111 1 111200 11122466788887 888743 2555555 99999999883388999999889999
Q ss_pred eEEEeecCCC-eeEEecCCCeEEEEEcCCCc
Q 022870 256 LCLSIDESCN-GGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 256 ~~~~~~~~~~-~l~s~s~dg~i~vw~~~~~~ 285 (291)
++++|+|... .++++..||.|.+||+....
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 9999988654 56788889999999997543
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4.8e-13 Score=110.28 Aligned_cols=209 Identities=11% Similarity=0.003 Sum_probs=130.9
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGR 84 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~ 84 (291)
...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+. ..+...+|+| ||+.|+ +.+.
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~--g~~~~~~~SP--DG~~la~~~~~ 266 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFP--GMTFAPRFSP--DGRKVVMSLSQ 266 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCC--CcccCcEECC--CCCEEEEEEec
Confidence 344567778889999999999998887653 468999999887654 333344 3378899999 998775 5566
Q ss_pred CCe--EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870 85 DGT--VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (291)
Q Consensus 85 dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
++. |.+||+.+++... +....... . ...|+|+|+.
T Consensus 267 ~g~~~Iy~~d~~~~~~~~-----Lt~~~~~~--~------------------------------------~~~~spDG~~ 303 (435)
T PRK05137 267 GGNTDIYTMDLRSGTTTR-----LTDSPAID--T------------------------------------SPSYSPDGSQ 303 (435)
T ss_pred CCCceEEEEECCCCceEE-----ccCCCCcc--C------------------------------------ceeEcCCCCE
Confidence 655 7777887664321 11110000 0 0459999988
Q ss_pred EEEEecC-CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC-C--CcEEEEEc
Q 022870 163 YMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-D--GSILVWDI 238 (291)
Q Consensus 163 ~~~~~g~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~-d--g~i~vwd~ 238 (291)
+++++.. .+..|+++|+..++. ..+.. + .+...... |+|+ |+ .|+.... . ..|.+||+
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~--------~----~~~~~~~~-~Spd---G~-~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNP-RRISF--------G----GGRYSTPV-WSPR---GD-LIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCe-EEeec--------C----CCcccCeE-ECCC---CC-EEEEEEcCCCceEEEEEEC
Confidence 7764421 123688889876654 33331 1 11223344 9998 54 5554433 2 36888887
Q ss_pred cCCCCceeeccccccceeEEEeecCCCeeEEecCC------CeEEEEEcCCCce
Q 022870 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTV 286 (291)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d------g~i~vw~~~~~~~ 286 (291)
.. + ....+.. ...+....|+|+|+.|+..+.+ ..+.+.|++.+..
T Consensus 366 ~~-~-~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 366 DG-S-GERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CC-C-ceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 64 3 2333332 2356788999999988765442 3688888876554
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.4e-13 Score=99.99 Aligned_cols=158 Identities=16% Similarity=0.266 Sum_probs=102.6
Q ss_pred eEEEEcCCCCEEEEecC----------CCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCeEEE--EeCCCeE
Q 022870 22 TDVCFHQTKPILFAGTT----------GGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS--QGRDGTV 88 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~----------dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i 88 (291)
..+.|+++|.+|+.-.. -|...+|.++ .+.....+..... .+|.+++|+| +|+.|++ |..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP--~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSP--NGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECc--CCCEEEEEEccCCccc
Confidence 45889999987765332 1345555552 2334444544332 4599999999 8888764 4467899
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe-
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA- 167 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (291)
.+||++... +..+....... +.|+|+|+.++++.
T Consensus 86 ~lyd~~~~~-----i~~~~~~~~n~----------------------------------------i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 86 TLYDVKGKK-----IFSFGTQPRNT----------------------------------------ISWSPDGRFLVLAGF 120 (194)
T ss_pred EEEcCcccE-----eEeecCCCceE----------------------------------------EEECCCCCEEEEEEc
Confidence 999997321 22333222111 55999998776532
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC------CCcEEEEEccCC
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDIRNP 241 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~------dg~i~vwd~~~~ 241 (291)
+...|.|.+||+++.+.+.+.+ | ..+..+. |+|+ |+ +|+++.. |+.++||+..
T Consensus 121 ~n~~G~l~~wd~~~~~~i~~~~---------~-----~~~t~~~-WsPd---Gr-~~~ta~t~~r~~~dng~~Iw~~~-- 179 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKISTFE---------H-----SDATDVE-WSPD---GR-YLATATTSPRLRVDNGFKIWSFQ-- 179 (194)
T ss_pred cCCCcEEEEEECCCCEEeeccc---------c-----CcEEEEE-EcCC---CC-EEEEEEeccceeccccEEEEEec--
Confidence 2335789999999888877665 1 2356666 9999 66 7776653 7889999986
Q ss_pred CCceeec
Q 022870 242 GIPLTAM 248 (291)
Q Consensus 242 ~~~~~~~ 248 (291)
++.+...
T Consensus 180 G~~l~~~ 186 (194)
T PF08662_consen 180 GRLLYKK 186 (194)
T ss_pred CeEeEec
Confidence 5555443
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.5e-13 Score=111.29 Aligned_cols=170 Identities=16% Similarity=0.249 Sum_probs=108.5
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
.|...++|.++||+++++|+|..||.|.+|.--. ......+.-|. ++|.+++|++ +|.+|++|+..|.+-+|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~--~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSS--DGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc--cccceeEEec--CCceEeecccceEEEEE
Confidence 4777899999999999999999999999996322 12334455566 4499999999 99999999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (291)
.+++++... +..+...-.+ +.++||+....++.+ |
T Consensus 279 q~~T~~kqf--LPRLgs~I~~-----------------------------------------i~vS~ds~~~sl~~~--D 313 (792)
T KOG1963|consen 279 QLETGKKQF--LPRLGSPILH-----------------------------------------IVVSPDSDLYSLVLE--D 313 (792)
T ss_pred eecCCCccc--ccccCCeeEE-----------------------------------------EEEcCCCCeEEEEec--C
Confidence 999987322 2222222222 348889887665443 7
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
..|.+....+.+...++........ .......+....+. ++|.. + .++-.+..|.|.+||+.+
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~-~~k~~~~~l~t~~~-idpr~--~--~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTP-STKTRPQSLTTGVS-IDPRT--N--SLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCc-cccccccccceeEE-EcCCC--C--ceeecCCCceEEEEeccc
Confidence 8999988766554443331000000 00111233444444 66631 1 455555556666666543
No 211
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.8e-13 Score=110.16 Aligned_cols=206 Identities=10% Similarity=0.025 Sum_probs=128.4
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD 85 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d 85 (291)
..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..... ...+.+|+| +|+.|+ +.+.+
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~Sp--DG~~l~~~~s~~ 269 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSP--DGRRLALTLSRD 269 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECC--CCCEEEEEEeCC
Confidence 34456667788999999999998887764 3479999998776543 322332 256889999 988775 55555
Q ss_pred C--eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 86 G--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 86 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
| .|.+||+.+++... +....... ...+|+|+|+.+
T Consensus 270 g~~~Iy~~d~~~g~~~~-----lt~~~~~~--------------------------------------~~~~~spDG~~l 306 (433)
T PRK04922 270 GNPEIYVMDLGSRQLTR-----LTNHFGID--------------------------------------TEPTWAPDGKSI 306 (433)
T ss_pred CCceEEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCCEE
Confidence 5 59999998765321 11100000 004599999877
Q ss_pred EEEecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC--cEEEEEc
Q 022870 164 MAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDI 238 (291)
Q Consensus 164 ~~~~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~ 238 (291)
+++ ...+|. |+++|+.+++.. .+... + ....... |+|+ |+ +|+..+ .++ .|.+||+
T Consensus 307 ~f~-sd~~g~~~iy~~dl~~g~~~-~lt~~------g------~~~~~~~-~SpD---G~-~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 307 YFT-SDRGGRPQIYRVAASGGSAE-RLTFQ------G------NYNARAS-VSPD---GK-KIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred EEE-ECCCCCceEEEEECCCCCeE-EeecC------C------CCccCEE-ECCC---CC-EEEEEECCCCceeEEEEEC
Confidence 764 333444 777777766532 22210 1 1122344 9998 54 555443 332 6999999
Q ss_pred cCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCc
Q 022870 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHST 285 (291)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~ 285 (291)
.+ ++.. .+. +........|+|+|++|+..+.+ +.|.+++++.+.
T Consensus 368 ~~-g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 368 ST-GSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CC-CCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 86 4443 443 22345567999999988776653 468888886543
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=112.83 Aligned_cols=189 Identities=12% Similarity=0.135 Sum_probs=126.7
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
+....+.+|.+.|.|-.|+|||.-|+|++.||.|++|. .+|....++.-.. .+|.|++|.| +.+.++-+.. +.+
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~--~~v~c~~W~p--~S~~vl~c~g-~h~ 168 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNE--ESIRCARWAP--NSNSIVFCQG-GHI 168 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcC--ceeEEEEECC--CCCceEEecC-CeE
Confidence 44556788999999999999999999999999999999 5676655554344 5599999999 6555444333 345
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
.|=-+..... +...+.+...... +.|++..+ +++ +|
T Consensus 169 ~IKpL~~n~k----~i~WkAHDGiiL~--------------------------------------~~W~~~s~-lI~-sg 204 (737)
T KOG1524|consen 169 SIKPLAANSK----IIRWRAHDGLVLS--------------------------------------LSWSTQSN-IIA-SG 204 (737)
T ss_pred EEeecccccc----eeEEeccCcEEEE--------------------------------------eecCcccc-cee-ec
Confidence 4444433321 2223332222111 44788765 444 78
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
++|-..++||... +.+..-. .| ...+++++ |+|+ . .++.++.+ +++ .-
T Consensus 205 GED~kfKvWD~~G-~~Lf~S~--------~~----ey~ITSva-~npd-~----~~~v~S~n-t~R------------~~ 252 (737)
T KOG1524|consen 205 GEDFRFKIWDAQG-ANLFTSA--------AE----EYAITSVA-FNPE-K----DYLLWSYN-TAR------------FS 252 (737)
T ss_pred CCceeEEeecccC-cccccCC--------hh----ccceeeee-eccc-c----ceeeeeee-eee------------ec
Confidence 8899999999864 4444333 23 45678887 9998 2 44444432 233 11
Q ss_pred cccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
+...+.|..++|++||..++.|...|.+.+=
T Consensus 253 ~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 2346789999999999999999999987663
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=103.36 Aligned_cols=198 Identities=14% Similarity=0.127 Sum_probs=129.6
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
+-.+..++|++.-..+|++..|-.|++||-.. ++...++... ...|+|++|-|. .+..|+.|+..| |.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s-QrnvtclawRPl-saselavgCr~g-IciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS-QRNVTCLAWRPL-SASELAVGCRAG-ICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh-hcceeEEEeccC-Ccceeeeeecce-eEEEEcCccc
Confidence 45688899999777889999999999999655 5555555332 256999999995 346777777754 8899876432
Q ss_pred CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcCeE
Q 022870 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLSEV 174 (291)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i 174 (291)
....++.-+.... ......++|.. +.|++||..++ .++-.|..|
T Consensus 174 n~~r~~~~~s~~~--------------------------------~qvl~~pgh~pVtsmqwn~dgt~l~-tAS~gsssi 220 (445)
T KOG2139|consen 174 NANRNIRMMSTHH--------------------------------LQVLQDPGHNPVTSMQWNEDGTILV-TASFGSSSI 220 (445)
T ss_pred ccccccccccccc--------------------------------hhheeCCCCceeeEEEEcCCCCEEe-ecccCcceE
Confidence 2111000000000 00111222222 77999986554 456668899
Q ss_pred EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccc
Q 022870 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (291)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~ 254 (291)
.|||..++..+..... ..+-+.-+. |+|++ . +|++++-|+..++|+..+.-....-.. ..+.
T Consensus 221 ~iWdpdtg~~~pL~~~------------glgg~slLk-wSPdg---d-~lfaAt~davfrlw~e~q~wt~erw~l-gsgr 282 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPK------------GLGGFSLLK-WSPDG---D-VLFAATCDAVFRLWQENQSWTKERWIL-GSGR 282 (445)
T ss_pred EEEcCCCCCccccccc------------CCCceeeEE-EcCCC---C-EEEEecccceeeeehhcccceecceec-cCCc
Confidence 9999999876544321 123344555 99994 4 899999999999997665222222222 3569
Q ss_pred eeEEEeecCCCeeEEe
Q 022870 255 VLCLSIDESCNGGISG 270 (291)
Q Consensus 255 v~~~~~~~~~~~l~s~ 270 (291)
|...+|+|.|.+|.-.
T Consensus 283 vqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFA 298 (445)
T ss_pred eeeeeecCCCCEEEEE
Confidence 9999999999987543
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.5e-12 Score=106.80 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=124.2
Q ss_pred EEecCCccceeEEEEcCCCCEEEEec---CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEE-eCCC-
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDG- 86 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg- 86 (291)
+.+..+...+...+|+|||+.|+..+ .+..+.+||+.+++..... ... ..+....|+| ||+.|+.. +.+|
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~--~~~~~~~~SP--DG~~La~~~~~~g~ 266 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP--RHNGAPAFSP--DGSKLAFALSKTGS 266 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC--CCcCCeEECC--CCCEEEEEEcCCCC
Confidence 33445667899999999999887643 3457999999887644322 222 2256789999 99888754 4455
Q ss_pred -eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEE
Q 022870 87 -TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (291)
Q Consensus 87 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (291)
.|.+||+.+++... +....... ....|+|+|+.+++
T Consensus 267 ~~I~~~d~~tg~~~~-----lt~~~~~~--------------------------------------~~~~wSPDG~~I~f 303 (429)
T PRK03629 267 LNLYVMDLASGQIRQ-----VTDGRSNN--------------------------------------TEPTWFPDSQNLAY 303 (429)
T ss_pred cEEEEEECCCCCEEE-----ccCCCCCc--------------------------------------CceEECCCCCEEEE
Confidence 58889998764321 11000000 00459999988766
Q ss_pred EecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCC--CcEEEEEccC
Q 022870 166 VAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYED--GSILVWDIRN 240 (291)
Q Consensus 166 ~~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~d--g~i~vwd~~~ 240 (291)
++ ..++. |.++|+.+++. ..+.. . ........ |+|+ |+ +|+. +..+ ..|++||+.+
T Consensus 304 ~s-~~~g~~~Iy~~d~~~g~~-~~lt~--------~----~~~~~~~~-~SpD---G~-~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 304 TS-DQAGRPQVYKVNINGGAP-QRITW--------E----GSQNQDAD-VSSD---GK-FMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred Ee-CCCCCceEEEEECCCCCe-EEeec--------C----CCCccCEE-ECCC---CC-EEEEEEccCCCceEEEEECCC
Confidence 43 33444 55557766543 23321 1 11122344 9998 55 5544 4333 3588899986
Q ss_pred CCCceeeccccccceeEEEeecCCCeeEEecCCCe---EEEEEcCCCc
Q 022870 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK---IVLYNLDHST 285 (291)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~---i~vw~~~~~~ 285 (291)
+. ...+.. ........|+|||++|+.++.++. +.+++++.+.
T Consensus 365 -g~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 365 -GG-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred -CC-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 43 333332 122346789999999998887764 7778876543
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2e-13 Score=112.15 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=113.5
Q ss_pred CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (291)
Q Consensus 39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
+..|.+||..... ...+..+. ..+.+.+|+| +|+.|+.++.+ ..|++||+.+++... +........ .
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~--l~~~~g~~~--~- 252 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSS--QPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKV--VASFRGHNG--A- 252 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCC--CccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEE--EecCCCccC--c-
Confidence 5789999986544 45555555 3499999999 99999877654 379999998764211 111110000 0
Q ss_pred eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE--EeCCCcceeeEeccccc
Q 022870 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI--WDLNTAERCTRLHQNSC 193 (291)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~--wd~~~~~~~~~~~~~~~ 193 (291)
.+|+|+|+.+++ +.+.+|.+.| ||+.+++. ..+.
T Consensus 253 --------------------------------------~~wSPDG~~La~-~~~~~g~~~Iy~~d~~~~~~-~~lt---- 288 (429)
T PRK01742 253 --------------------------------------PAFSPDGSRLAF-ASSKDGVLNIYVMGANGGTP-SQLT---- 288 (429)
T ss_pred --------------------------------------eeECCCCCEEEE-EEecCCcEEEEEEECCCCCe-Eeec----
Confidence 559999987765 3444676555 56665543 3343
Q ss_pred CCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
.+ ........ |+|+ |+.+++++..+|..+||++...+.....+ .+.. ....|+|+|++|+..+.+
T Consensus 289 ----~~----~~~~~~~~-wSpD---G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 289 ----SG----AGNNTEPS-WSPD---GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred ----cC----CCCcCCEE-ECCC---CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence 22 12334455 9998 55344555567888888876433333333 3433 457899999999888776
Q ss_pred CeEEEEEcCCCcee
Q 022870 274 QKIVLYNLDHSTVS 287 (291)
Q Consensus 274 g~i~vw~~~~~~~~ 287 (291)
+ +.+||+.+++..
T Consensus 354 ~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 354 N-VVKQDLTSGSTE 366 (429)
T ss_pred C-EEEEECCCCCeE
Confidence 5 556999887643
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=3.9e-13 Score=99.52 Aligned_cols=213 Identities=14% Similarity=0.095 Sum_probs=142.3
Q ss_pred CCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC-CCC--eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
.++.++|..|...|++++|+|..+.|++++.|..-.+|.. ..+ +....+..+..+ .+++.|+| .++.|++|+.
T Consensus 45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA--At~V~WsP--~enkFAVgSg 120 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA--ATCVKWSP--KENKFAVGSG 120 (361)
T ss_pred ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccc--eeeEeecC--cCceEEeccC
Confidence 4788999999999999999999999999999999999998 333 334444556654 99999999 8899999999
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
...|.+|-++...--. +...-..+......+ ++|+|++- +
T Consensus 121 ar~isVcy~E~ENdWW--VsKhikkPirStv~s------------------------------------ldWhpnnV--L 160 (361)
T KOG1523|consen 121 ARLISVCYYEQENDWW--VSKHIKKPIRSTVTS------------------------------------LDWHPNNV--L 160 (361)
T ss_pred ccEEEEEEEeccccee--hhhhhCCccccceee------------------------------------eeccCCcc--e
Confidence 9999999887654221 000000010001011 55888763 4
Q ss_pred EEecCCcCeEEEEeCCCcceeeEecccccCCCC----------CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP----------NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
+++|+.|+..+++..-- +.+.....++.. .......+.+..+. |+|++. .|+-.+.|..+.
T Consensus 161 laaGs~D~k~rVfSayI----K~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~----~lawv~Hds~v~ 231 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYI----KGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGN----RLAWVGHDSTVS 231 (361)
T ss_pred ecccccCcceeEEEEee----eccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCC----EeeEecCCCceE
Confidence 44788899999996421 111100000000 01113467788887 999844 899999999999
Q ss_pred EEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (291)
+-|...+.+.+..+..-.-+..++.|-.+. .++.++.|.
T Consensus 232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c 270 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDC 270 (361)
T ss_pred EeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCC
Confidence 999887554555555445788888883332 355555663
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2e-12 Score=106.22 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=122.3
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG 86 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg 86 (291)
...+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +.... ..+...+|+| ||+.|+ +.+.+|
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~--g~~~~~~~SP--DG~~la~~~~~~g 262 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK--GSNSAPAWSP--DGRTLAVALSRDG 262 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC--CCccceEECC--CCCEEEEEEccCC
Confidence 34455678889999999999988876542 469999998886543 32222 2367899999 998876 567788
Q ss_pred eEEEEECC--CCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 87 TVKCWDIE--NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 87 ~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
...+|.++ .+... .+....... ....|+|||+.++
T Consensus 263 ~~~Iy~~d~~~~~~~-----~lt~~~~~~--------------------------------------~~~~wSpDG~~l~ 299 (427)
T PRK02889 263 NSQIYTVNADGSGLR-----RLTQSSGID--------------------------------------TEPFFSPDGRSIY 299 (427)
T ss_pred CceEEEEECCCCCcE-----ECCCCCCCC--------------------------------------cCeEEcCCCCEEE
Confidence 77777654 33211 111100000 0044999998877
Q ss_pred EEecCCcCeEEEEeC--CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC---cEEEEEcc
Q 022870 165 AVAGEQLSEVEIWDL--NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIR 239 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~ 239 (291)
++ +..++...+|.+ .+++. ..+... + ....... |+|+ |+ +|+..+.++ .|++||+.
T Consensus 300 f~-s~~~g~~~Iy~~~~~~g~~-~~lt~~------g------~~~~~~~-~SpD---G~-~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 300 FT-SDRGGAPQIYRMPASGGAA-QRVTFT------G------SYNTSPR-ISPD---GK-LLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred EE-ecCCCCcEEEEEECCCCce-EEEecC------C------CCcCceE-ECCC---CC-EEEEEEccCCcEEEEEEECC
Confidence 64 434455566654 44432 222210 1 1122344 9998 55 666555443 69999998
Q ss_pred CCCCceeeccccccceeEEEeecCCCeeEEecCCC---eEEEEEcC
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLD 282 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vw~~~ 282 (291)
+ ++.. .+.. ........|+|+|+.|+..+.++ .+.+-+++
T Consensus 361 ~-g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 361 T-GQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred C-CCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 7 4433 3332 23346789999999988776543 35555553
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=2.8e-12 Score=102.37 Aligned_cols=200 Identities=17% Similarity=0.113 Sum_probs=129.7
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEE
Q 022870 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (291)
Q Consensus 33 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 112 (291)
+++-..+|.|.+.|..+.+.+..+..... .-..+.|+| ||+++++++.||.|.++|+.+.+... +++.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGA--PHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STT--EEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCC--ceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence 35667789999999999999999887542 234577899 99999999999999999999987543 33333322
Q ss_pred EEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccc
Q 022870 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (291)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~ 192 (291)
.. ++++++|+++++ +...++.+.++|.++.+.++.+....
T Consensus 81 ~~---------------------------------------i~~s~DG~~~~v-~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 81 RG---------------------------------------IAVSPDGKYVYV-ANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EE---------------------------------------EEE--TTTEEEE-EEEETTEEEEEETTT--EEEEEE--E
T ss_pred ce---------------------------------------EEEcCCCCEEEE-EecCCCceeEeccccccceeeccccc
Confidence 22 568999987765 55568999999999999998876311
Q ss_pred cCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEE-ec
Q 022870 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS-GG 271 (291)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~s 271 (291)
.. .......+.++. .+|.. ..++++--+.+.|.+.|..+...+......-........|+|++++++. ..
T Consensus 121 ~~-----~~~~~~Rv~aIv-~s~~~---~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 121 MP-----VDGPESRVAAIV-ASPGR---PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp E------TTTS---EEEEE-E-SSS---SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred cc-----ccccCCCceeEE-ecCCC---CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence 00 000223445554 56652 2256666667999999988743333233333556788999999998755 45
Q ss_pred CCCeEEEEEcCCCceeee
Q 022870 272 ADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 272 ~dg~i~vw~~~~~~~~~~ 289 (291)
.++.|-++|..+++++..
T Consensus 192 ~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp GGTEEEEEETTTTEEEEE
T ss_pred ccceeEEEeeccceEEEE
Confidence 567999999999877643
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.8e-12 Score=103.29 Aligned_cols=251 Identities=15% Similarity=0.128 Sum_probs=155.1
Q ss_pred CccceeEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 17 HRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
|...-+.+..+|||+|+ |+|...-.|++||+.+-. ..++-|...+.|.-.-.+. |-..++--..|.+|.+..--.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEecc--chhhheEeecCceeeehhhcC
Confidence 77788999999999986 788889999999987543 3456666655566666666 656677777788887654332
Q ss_pred CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCCcC
Q 022870 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~ 172 (291)
.... ..++...... .--.++........+..+..+++..++........... +..++... +++ +|..+|
T Consensus 126 ~hy~----~RIP~~GRDm--~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla-~Gt~~g 197 (703)
T KOG2321|consen 126 RHYR----TRIPKFGRDM--KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLA-CGTEDG 197 (703)
T ss_pred eeee----eecCcCCccc--cccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-eEE-ecccCc
Confidence 1110 0111110000 00011122333344444555555555533322111111 55666543 444 788899
Q ss_pred eEEEEeCCCcceeeEecccccCCCCCCCC-CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec-cc
Q 022870 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KV 250 (291)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~ 250 (291)
.|..||.+....+..+......+ .|+. .....++++. |+.+ |- .+++|+.+|.|.|||++. .+++..- .+
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~--s~pg~~~~~svTal~-F~d~---gL-~~aVGts~G~v~iyDLRa-~~pl~~kdh~ 269 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVN--SHPGGDAAPSVTALK-FRDD---GL-HVAVGTSTGSVLIYDLRA-SKPLLVKDHG 269 (703)
T ss_pred eEEEecchhhhhheeeecccccC--CCccccccCcceEEE-ecCC---ce-eEEeeccCCcEEEEEccc-CCceeecccC
Confidence 99999999988877776432111 1111 1233478887 9876 54 899999999999999998 6665443 33
Q ss_pred cccceeEEEeecC--CCeeEEecCCCeEEEEEcCCCceee
Q 022870 251 HLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 251 h~~~v~~~~~~~~--~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
..-+|..+.|-+. ++.|+|. ....++|||-.+|+..-
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA 308 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCCcee
Confidence 4568999999443 4556665 35689999999887653
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=112.75 Aligned_cols=191 Identities=16% Similarity=0.222 Sum_probs=142.2
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
...|.++.|..+.+++|.+- ...+.||| ..|..++.++.+ .+|..+.|.| -.-+|++++..|.++.-|+.+++
T Consensus 170 ~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~---~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~Gk 242 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH---IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGK 242 (545)
T ss_pred hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc---Cchhhhcccc--hhheeeecccCCceEEEeechhh
Confidence 45688888888887888765 46799999 678888888877 4599999999 64567788999999999999998
Q ss_pred CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (291)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w 177 (291)
.+. .+......... ++-+|-+. ++-.|...|+|.+|
T Consensus 243 lVa----~~~t~~G~~~v--------------------------------------m~qNP~Na--Vih~GhsnGtVSlW 278 (545)
T KOG1272|consen 243 LVA----SIRTGAGRTDV--------------------------------------MKQNPYNA--VIHLGHSNGTVSLW 278 (545)
T ss_pred hhH----HHHccCCccch--------------------------------------hhcCCccc--eEEEcCCCceEEec
Confidence 755 33322221111 33555543 33467789999999
Q ss_pred eCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeE
Q 022870 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (291)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 257 (291)
...+.+++..+. .| .+.+.+++ +.+. |+ |++|.+.|..++|||+++ ...+.++.. ..+...
T Consensus 279 SP~skePLvKiL--------cH----~g~V~siA-v~~~---G~-YMaTtG~Dr~~kIWDlR~-~~ql~t~~t-p~~a~~ 339 (545)
T KOG1272|consen 279 SPNSKEPLVKIL--------CH----RGPVSSIA-VDRG---GR-YMATTGLDRKVKIWDLRN-FYQLHTYRT-PHPASN 339 (545)
T ss_pred CCCCcchHHHHH--------hc----CCCcceEE-ECCC---Cc-EEeecccccceeEeeecc-ccccceeec-CCCccc
Confidence 999999988887 55 55677776 9988 66 999999999999999998 444444443 356778
Q ss_pred EEeecCCCeeEEecCCCeEEEEE
Q 022870 258 LSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 258 ~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+++|..|. ++.|....|.||.
T Consensus 340 ls~Sqkgl--LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 340 LSLSQKGL--LALSYGDHVQIWK 360 (545)
T ss_pred cccccccc--eeeecCCeeeeeh
Confidence 89998875 3344455799995
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=4.3e-12 Score=95.73 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=125.1
Q ss_pred CccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC----eE--------EEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 17 HRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH----RT--------VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 17 h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~----~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
-...|+|++|-| .+..|+.|+..| |.+|..... .. ...++ +.+..+|++++|++ ||..+++++
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~-~pgh~pVtsmqwn~--dgt~l~tAS 214 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQ-DPGHNPVTSMQWNE--DGTILVTAS 214 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhee-CCCCceeeEEEEcC--CCCEEeecc
Confidence 356799999999 556788888765 889986431 11 11122 22226799999999 999999887
Q ss_pred C-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870 84 R-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (291)
Q Consensus 84 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
. |..|.|||..++.... +....... ... +.|+||+..
T Consensus 215 ~gsssi~iWdpdtg~~~p--L~~~glgg-~sl---------------------------------------LkwSPdgd~ 252 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTGQKIP--LIPKGLGG-FSL---------------------------------------LKWSPDGDV 252 (445)
T ss_pred cCcceEEEEcCCCCCccc--ccccCCCc-eee---------------------------------------EEEcCCCCE
Confidence 5 6789999999987643 22111111 111 559999999
Q ss_pred EEEEecCCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 163 YMAVAGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
+++++ -|+..++|... +....+... ..+.+.... |+|. |..+|++.+..-.|+-....
T Consensus 253 lfaAt--~davfrlw~e~q~wt~erw~l-------------gsgrvqtac-Wspc---GsfLLf~~sgsp~lysl~f~-- 311 (445)
T KOG2139|consen 253 LFAAT--CDAVFRLWQENQSWTKERWIL-------------GSGRVQTAC-WSPC---GSFLLFACSGSPRLYSLTFD-- 311 (445)
T ss_pred EEEec--ccceeeeehhcccceecceec-------------cCCceeeee-ecCC---CCEEEEEEcCCceEEEEeec--
Confidence 88654 47999999544 333333222 123455554 9998 55466666655444333222
Q ss_pred CCc--------------eeecc------c---cccceeEEEeecCCCeeEEecCC--------CeEEEEEcCCCc
Q 022870 242 GIP--------------LTAMK------V---HLEPVLCLSIDESCNGGISGGAD--------QKIVLYNLDHST 285 (291)
Q Consensus 242 ~~~--------------~~~~~------~---h~~~v~~~~~~~~~~~l~s~s~d--------g~i~vw~~~~~~ 285 (291)
+++ +..+. + -.+++.+++|+|.|.+||+.=.. +.|.+||.+..-
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 111 11111 1 13578899999999999876443 336667766543
No 222
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=9e-14 Score=123.39 Aligned_cols=201 Identities=16% Similarity=0.306 Sum_probs=148.9
Q ss_pred ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++.... ..|+.+.|+. .|+.+..+..||.+.+|..
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeeccc
Confidence 444667789999999888999999999999999999988888876554 6799999999 9999999999999999998
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec--CCc
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG--EQL 171 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d 171 (291)
.. ++....+.+......+.+. . .+++.+| +.+
T Consensus 2281 ~p-----k~~~s~qchnk~~~Df~Fi--------------------------------------~---s~~~tag~s~d~ 2314 (2439)
T KOG1064|consen 2281 SP-----KPYTSWQCHNKALSDFRFI--------------------------------------G---SLLATAGRSSDN 2314 (2439)
T ss_pred CC-----cceeccccCCccccceeee--------------------------------------e---hhhhccccCCCC
Confidence 83 2333444444333322221 1 2233233 347
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h 251 (291)
+.+.+||..-.....-+.. .| .+..++++ |.|... .|++|+.+|.|++||++. .+..+.++.
T Consensus 2315 ~n~~lwDtl~~~~~s~v~~-------~H----~~gaT~l~-~~P~~q----llisggr~G~v~l~D~rq-rql~h~~~~- 2376 (2439)
T KOG1064|consen 2315 RNVCLWDTLLPPMNSLVHT-------CH----DGGATVLA-YAPKHQ----LLISGGRKGEVCLFDIRQ-RQLRHTFQA- 2376 (2439)
T ss_pred CcccchhcccCcccceeee-------ec----CCCceEEE-EcCcce----EEEecCCcCcEEEeehHH-HHHHHHhhh-
Confidence 8899999764322211111 44 33456665 999733 999999999999999998 777777765
Q ss_pred ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
++ ...++++|+..|.|+||++....+++++
T Consensus 2377 --------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2377 --------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred --------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 55 5568999999999999999998887764
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=9.6e-13 Score=103.93 Aligned_cols=163 Identities=17% Similarity=0.292 Sum_probs=114.4
Q ss_pred ccceeEEEEcC-CCCEEEEecCCCeEEEEeCCC--------------CeEE--EEEe----------eecCCcceEEEEE
Q 022870 18 RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ--------------HRTV--SSSW----------VHSAAHGIVSVAT 70 (291)
Q Consensus 18 ~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~--------------~~~~--~~~~----------~~~~~~~v~~~~~ 70 (291)
+..|+|+.|-| +...++.+-.+|.+.++|.+- +... .+-+ -+..+.+|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 37899999999 555677778899999997532 1111 1111 1122245889999
Q ss_pred eecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccce-EEEEEeecccCccceeccCCCCceeeecccCccccccCC
Q 022870 71 GPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (291)
Q Consensus 71 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (291)
+| ||.+|++.+.||.+||+|..+.++.. .++..- ...|
T Consensus 299 S~--DG~~LA~VSqDGfLRvF~fdt~eLlg----~mkSYFGGLLC----------------------------------- 337 (636)
T KOG2394|consen 299 SP--DGKYLATVSQDGFLRIFDFDTQELLG----VMKSYFGGLLC----------------------------------- 337 (636)
T ss_pred cC--CCceEEEEecCceEEEeeccHHHHHH----HHHhhccceEE-----------------------------------
Confidence 99 99999999999999999999876543 222221 1222
Q ss_pred CCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC-------------
Q 022870 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS------------- 216 (291)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------- 216 (291)
++|+|||++++ +|++|.-|.||.+...+.+..-+ +| +.++..++ |.|.
T Consensus 338 ----vcWSPDGKyIv--tGGEDDLVtVwSf~erRVVARGq--------GH----kSWVs~Va-FDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 338 ----VCWSPDGKYIV--TGGEDDLVTVWSFEERRVVARGQ--------GH----KSWVSVVA-FDPYTTSTEEWNNFSGM 398 (636)
T ss_pred ----EEEcCCccEEE--ecCCcceEEEEEeccceEEEecc--------cc----ccceeeEe-ecccccccccccccccc
Confidence 66999998766 78889999999999888777665 56 44555554 6631
Q ss_pred ------------------C-CCC------------ceEEEeecCCCcEEEEEccC
Q 022870 217 ------------------K-SQG------------FVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 217 ------------------~-~~g------------~~~l~~g~~dg~i~vwd~~~ 240 (291)
+ .++ .+.|.+.+.|..+.+||+..
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 0 001 24688899999999999974
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=2.1e-11 Score=100.48 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=125.0
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG 86 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg 86 (291)
.+.+..+...+...+|+|+|++|+.+..+ ..|++||+.+++.... ..+. ..+.+++|+| +++.|+ +.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~--~~~~~~~~sp--Dg~~l~~~~~~~~ 256 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFP--GMNGAPAFSP--DGSKLAVSLSKDG 256 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCC--CCccceEECC--CCCEEEEEECCCC
Confidence 44555567778999999999999876543 4799999988765433 2333 2367899999 988776 445444
Q ss_pred --eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 87 --TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 87 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.|.+||+.++.... +...... . ....|+|+|+.++
T Consensus 257 ~~~i~~~d~~~~~~~~-----l~~~~~~------~--------------------------------~~~~~s~dg~~l~ 293 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTR-----LTNGPGI------D--------------------------------TEPSWSPDGKSIA 293 (417)
T ss_pred CccEEEEECCCCCEEE-----CCCCCCC------C--------------------------------CCEEECCCCCEEE
Confidence 58888887664321 1000000 0 0034889998776
Q ss_pred EEecCCcC--eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC---cEEEEEcc
Q 022870 165 AVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIR 239 (291)
Q Consensus 165 ~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg---~i~vwd~~ 239 (291)
+++ ..++ .|.++|+.+++.. .+.. + ........ |+|+ |+ +++.++.++ .|.+||+.
T Consensus 294 ~~s-~~~g~~~iy~~d~~~~~~~-~l~~--------~----~~~~~~~~-~spd---g~-~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 294 FTS-DRGGSPQIYMMDADGGEVR-RLTF--------R----GGYNASPS-WSPD---GD-LIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred EEE-CCCCCceEEEEECCCCCEE-Eeec--------C----CCCccCeE-ECCC---CC-EEEEEEccCCceEEEEEeCC
Confidence 543 3233 5888888776543 2321 1 11233444 9998 44 666666554 78899988
Q ss_pred CCCCceeeccccccceeEEEeecCCCeeEEecCCC---eEEEEEcCC
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDH 283 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vw~~~~ 283 (291)
+ +. ...+... .......|+|++++|+..+.++ .+.+.+.+.
T Consensus 355 ~-~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 355 G-GG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred C-CC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 6 33 2333322 2345568999999888776654 456666544
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=2.1e-10 Score=91.70 Aligned_cols=255 Identities=11% Similarity=0.101 Sum_probs=149.8
Q ss_pred cceeEEEEcCCCCEEEEecC----CCeEEEEeCCCC--eE--EEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEE
Q 022870 19 ASVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--RT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVK 89 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~ 89 (291)
.....++++|++++|++... +|.|..|++... ++ +....... ..-..++++| ++++|+++. .+|+|.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~--~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDP--DGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEec--CCCEEEEEEccCCeEE
Confidence 34567889999999988765 578999987753 33 22332222 3356899999 889888876 489999
Q ss_pred EEECCCCCCCCCCcccc------------ccceEEEEEeecccCccceeccCCCCceeeecccCcc-c----cccCCCCC
Q 022870 90 CWDIENGGLSSNPSLTI------------KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET-V----DTDSLCDS 152 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~ 152 (291)
++++.....+....... .....+...+.+........-.....+..++++.... + ........
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 99998743222111011 1122344555555444444344445566666655441 1 11222222
Q ss_pred C---cccCCCCCcEEEEecCCcCeEEEEeCC--Ccc--eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870 153 K---DDVPAEGPKYMAVAGEQLSEVEIWDLN--TAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (291)
Q Consensus 153 ~---~~~~~~~~~~~~~~g~~d~~i~~wd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (291)
. ++|+|+++++++ ....++.|.+|++. .+. .+..+... +. +.. .......+. ++|+ |+.+.+
T Consensus 193 GPRh~~f~pdg~~~Yv-~~e~s~~v~v~~~~~~~g~~~~~~~~~~~--~~--~~~--~~~~~~~i~-ispd---g~~lyv 261 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYV-VNELSNTVSVFDYDPSDGSLTEIQTISTL--PE--GFT--GENAPAEIA-ISPD---GRFLYV 261 (345)
T ss_dssp SEEEEEE-TTSSEEEE-EETTTTEEEEEEEETTTTEEEEEEEEESC--ET--TSC--SSSSEEEEE-E-TT---SSEEEE
T ss_pred CCcEEEEcCCcCEEEE-ecCCCCcEEEEeecccCCceeEEEEeeec--cc--ccc--ccCCceeEE-EecC---CCEEEE
Confidence 2 999999987766 56778999999998 332 22222210 00 111 112456666 9998 663455
Q ss_pred eecCCCcEEEEEccCCCCce---eeccccccceeEEEeecCCCeeEEec-CCCeEEEEEc--CCCceee
Q 022870 226 AGYEDGSILVWDIRNPGIPL---TAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNL--DHSTVSH 288 (291)
Q Consensus 226 ~g~~dg~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~--~~~~~~~ 288 (291)
+....+.|.+|++......+ ..+.........++++|+|++|+++. .++.|.+|++ +++++..
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 55677899999994322222 23333344579999999999998776 5678999977 4666543
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=107.19 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=110.8
Q ss_pred EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCc
Q 022870 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (291)
Q Consensus 54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (291)
..+.+|.+. |.++.|+. +|.+|++||.|-.+.|||.-..+... .+..... ...|+
T Consensus 44 ~eL~GH~GC--VN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllh----sI~TgHt-aNIFs---------------- 98 (758)
T KOG1310|consen 44 AELTGHTGC--VNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLH----SISTGHT-ANIFS---------------- 98 (758)
T ss_pred hhhccccce--ecceeecC--CCCEEeecCCcceEEeecchhcceee----eeecccc-cceeE----------------
Confidence 457789865 99999999 99999999999999999998665433 2222111 11111
Q ss_pred eeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc----------eeeEecccccCCCCCCCCCc
Q 022870 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE----------RCTRLHQNSCGGSPNFSSKG 203 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~----------~~~~~~~~~~~~~~~~~~~~ 203 (291)
+.|-|....-++++|..|..|++||+...+ ....+. .|....
T Consensus 99 --------------------vKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~--------cht~rV 150 (758)
T KOG1310|consen 99 --------------------VKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS--------CHTDRV 150 (758)
T ss_pred --------------------EeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh--------hhhhhh
Confidence 235555444455588889999999998532 122222 343333
Q ss_pred ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc---------cccceeEEEeecCC-CeeEEecCC
Q 022870 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---------HLEPVLCLSIDESC-NGGISGGAD 273 (291)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---------h~~~v~~~~~~~~~-~~l~s~s~d 273 (291)
+. ++ -.|+ +.+.+.++++||+|+-+|++.+..+-..... .--...++..+|.. .+|+.|+.|
T Consensus 151 Kr----ia-~~p~---~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 151 KR----IA-TAPN---GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred hh----ee-cCCC---CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 32 32 5555 3238999999999999999974333222211 11245677887754 478899999
Q ss_pred CeEEEEEcC
Q 022870 274 QKIVLYNLD 282 (291)
Q Consensus 274 g~i~vw~~~ 282 (291)
-..++||.+
T Consensus 223 pfarLYD~R 231 (758)
T KOG1310|consen 223 PFARLYDRR 231 (758)
T ss_pred chhhhhhhh
Confidence 999999954
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.5e-11 Score=101.09 Aligned_cols=182 Identities=15% Similarity=0.109 Sum_probs=107.7
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..|.++|.. +.....+..+. ..+.+.+|+| ||+.|+..+.+ ..|.+||+.+++... +....... ..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~--~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~--~~-- 244 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSP--EPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSN--SA-- 244 (427)
T ss_pred cEEEEECCC-CCCceEeccCC--CCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCc--cc--
Confidence 468888864 44444454455 4499999999 99988876643 459999998775321 11111000 00
Q ss_pred ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE--eCCCcceeeEecccccC
Q 022870 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW--DLNTAERCTRLHQNSCG 194 (291)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w--d~~~~~~~~~~~~~~~~ 194 (291)
.+|+|||+.++++ .+.++...|| |+..+. ...+.
T Consensus 245 -------------------------------------~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~-~~~lt----- 280 (427)
T PRK02889 245 -------------------------------------PAWSPDGRTLAVA-LSRDGNSQIYTVNADGSG-LRRLT----- 280 (427)
T ss_pred -------------------------------------eEECCCCCEEEEE-EccCCCceEEEEECCCCC-cEECC-----
Confidence 4599999887653 4456665555 454443 33443
Q ss_pred CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (291)
.+. ....... |+|+ |+.++++...+|...+|.+...+.....+..+.......+|+|+|++|+..+.++
T Consensus 281 ---~~~----~~~~~~~-wSpD---G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 281 ---QSS----GIDTEPF-FSPD---GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred ---CCC----CCCcCeE-EcCC---CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 221 1223344 9998 5523444444566666665421222222222233345678999999998776554
Q ss_pred ---eEEEEEcCCCcee
Q 022870 275 ---KIVLYNLDHSTVS 287 (291)
Q Consensus 275 ---~i~vw~~~~~~~~ 287 (291)
.|.+||+.+++..
T Consensus 350 g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 350 GAFKLYVQDLATGQVT 365 (427)
T ss_pred CcEEEEEEECCCCCeE
Confidence 6999999887643
No 228
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=94.74 Aligned_cols=159 Identities=18% Similarity=0.261 Sum_probs=111.4
Q ss_pred CccceeEEEEcC-CCC--EEEEecCCCeEEEEeCCCCeEEE----------EEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 17 HRASVTDVCFHQ-TKP--ILFAGTTGGELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 17 h~~~v~~l~~~~-~~~--~l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
..+.+.|..+.. ++. +++.|-.+|.|.+||+.++..+. ....|. .+|.++.|.+ .-+.=++|+
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~--qpvlsldyas--~~~rGisgg 224 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK--QPVLSLDYAS--SCDRGISGG 224 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc--Ccceeeeech--hhcCCcCCC
Confidence 456677777544 333 56778889999999999874332 233465 5599999988 445567888
Q ss_pred CCCeEEEEECCCCCC--CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870 84 RDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
.+..+..|++..... ......+++. ++-.++..-||++
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lkn----------------------------------------pGv~gvrIRpD~K 264 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKN----------------------------------------PGVSGVRIRPDGK 264 (323)
T ss_pred ccccceeeeeccccCcccccceEEecC----------------------------------------CCccceEEccCCc
Confidence 888899999875421 1100111111 1111145668875
Q ss_pred cEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEc
Q 022870 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~ 238 (291)
++| +++.|+.||+|..++.+++..++ -| .+.+.+++ |+|+.+ .+|+++.|+.|.+|++
T Consensus 265 -IlA-TAGWD~RiRVyswrtl~pLAVLk--------yH----sagvn~vA-fspd~~----lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 -ILA-TAGWDHRIRVYSWRTLNPLAVLK--------YH----SAGVNAVA-FSPDCE----LMAAASKDARISLWKL 322 (323)
T ss_pred -EEe-ecccCCcEEEEEeccCCchhhhh--------hh----hcceeEEE-eCCCCc----hhhhccCCceEEeeec
Confidence 555 66679999999999999999888 45 46788887 999844 8999999999999986
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=9.5e-11 Score=96.87 Aligned_cols=205 Identities=10% Similarity=0.020 Sum_probs=123.1
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG 86 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg 86 (291)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +.... ..+....|+| +|+.|+ +.+.+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~--g~~~~~~~Sp--DG~~la~~~~~~g 265 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFE--GLNGAPAWSP--DGSKLAFVLSKDG 265 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCC--CCcCCeEECC--CCCEEEEEEccCC
Confidence 34455677788999999999988766543 469999998876543 22222 2256789999 988876 555555
Q ss_pred --eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 87 --TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 87 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.|.+||+.+++... +....... . ...|+|+|+.++
T Consensus 266 ~~~Iy~~d~~~~~~~~-----lt~~~~~~--~------------------------------------~~~~spDg~~i~ 302 (430)
T PRK00178 266 NPEIYVMDLASRQLSR-----VTNHPAID--T------------------------------------EPFWGKDGRTLY 302 (430)
T ss_pred CceEEEEECCCCCeEE-----cccCCCCc--C------------------------------------CeEECCCCCEEE
Confidence 58888988764321 11000000 0 044899998877
Q ss_pred EEecCCc--CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC--cEEEEEcc
Q 022870 165 AVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIR 239 (291)
Q Consensus 165 ~~~g~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~~ 239 (291)
+++ ..+ ..|+++|+.+++... +... +. ...... |+|+ |+ .|+..+ .++ .|.+||+.
T Consensus 303 f~s-~~~g~~~iy~~d~~~g~~~~-lt~~------~~------~~~~~~-~Spd---g~-~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 303 FTS-DRGGKPQIYKVNVNGGRAER-VTFV------GN------YNARPR-LSAD---GK-TLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred EEE-CCCCCceEEEEECCCCCEEE-eecC------CC------CccceE-ECCC---CC-EEEEEEccCCceEEEEEECC
Confidence 643 333 357778887776432 2210 11 112233 9998 44 454443 343 58889988
Q ss_pred CCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCc
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHST 285 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~ 285 (291)
+ +.. ..+.. ........|+|+|+.++..+.+ ..|.+++++.+.
T Consensus 364 t-g~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 364 R-GSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred C-CCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 6 433 33322 2222356899999998766643 357777776543
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=1.5e-11 Score=91.20 Aligned_cols=86 Identities=15% Similarity=0.264 Sum_probs=77.9
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCe-EEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
-..+.+|..+|.|++.+.+|.++||+|..|+ |||||..+|..+.+++.......|.+++|+| +..+|+++|..|+|.
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp--~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP--NSSWLAVSSDKGTLH 251 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC--CccEEEEEcCCCeEE
Confidence 3568899999999999999999999999998 6899999999999998766667799999999 999999999999999
Q ss_pred EEECCCCCC
Q 022870 90 CWDIENGGL 98 (291)
Q Consensus 90 iwd~~~~~~ 98 (291)
|+.++....
T Consensus 252 iF~l~~~~~ 260 (346)
T KOG2111|consen 252 IFSLRDTEN 260 (346)
T ss_pred EEEeecCCC
Confidence 999987543
No 231
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=1e-09 Score=86.03 Aligned_cols=242 Identities=8% Similarity=0.076 Sum_probs=139.9
Q ss_pred EcCCCCEEEEecC----------CCeEEEEeCCCCeEEEEEeeecCC-----cceEEEEEeecCCCCeEEEEe-C-CCeE
Q 022870 26 FHQTKPILFAGTT----------GGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIGLNKVISQG-R-DGTV 88 (291)
Q Consensus 26 ~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~-dg~i 88 (291)
++||++.|+.+.. +..|.+||..+.+.+..+.....+ ..-..++++| ||++|+... . +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEE
Confidence 8999998877655 789999999999999888754321 1134788999 999888766 3 6899
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeeccc-Ccccccc---CCCCCC-----cccCC-
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV-GETVDTD---SLCDSK-----DDVPA- 158 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~-----~~~~~- 158 (291)
.+.|+.+++.+. ++.... ....+............++. ...+.+.. ++..... +..... -.|.+
T Consensus 131 ~VvD~~~~kvv~----ei~vp~-~~~vy~t~e~~~~~~~~Dg~-~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 131 GVVDLEGKAFVR----MMDVPD-CYHIFPTANDTFFMHCRDGS-LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred EEEECCCCcEEE----EEeCCC-CcEEEEecCCccEEEeecCc-eEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 999999988654 222211 00000000000011111111 11111100 0000000 001000 13455
Q ss_pred CCCcEEEEecCCcCeEEEEeCCCcc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ec----
Q 022870 159 EGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GY---- 228 (291)
Q Consensus 159 ~~~~~~~~~g~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~---- 228 (291)
+|..+++ +.. |.|.+.|+...+ ....+.... .......+....++ ++|++ + .+++ ..
T Consensus 205 dg~~~~v-s~e--G~V~~id~~~~~~~~~~~~~~~~~~~-----~~~~wrP~g~q~ia-~~~dg---~-~lyV~~~~~~~ 271 (352)
T TIGR02658 205 SGRLVWP-TYT--GKIFQIDLSSGDAKFLPAIEAFTEAE-----KADGWRPGGWQQVA-YHRAR---D-RIYLLADQRAK 271 (352)
T ss_pred CCcEEEE-ecC--CeEEEEecCCCcceecceeeeccccc-----cccccCCCcceeEE-EcCCC---C-EEEEEecCCcc
Confidence 7766654 333 999999965433 222222100 00000111112254 99883 3 3333 31
Q ss_pred -----CCCcEEEEEccCCCCceeeccccccceeEEEeecCCC-eeEEec-CCCeEEEEEcCCCceeeee
Q 022870 229 -----EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGG-ADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 229 -----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s-~dg~i~vw~~~~~~~~~~~ 290 (291)
..+.|.++|..+ .+.+..+.. ...+..++++|+++ +|++.. .++.|.+.|..+++.+.++
T Consensus 272 ~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225899999998 788877764 46889999999999 777555 6788999999999998875
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2e-11 Score=100.71 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=111.1
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
.+|.+||... .....+..+. ..+.+.+|+| ||+.|+..+.+ ..|.+||+.+++... +....... .
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~--~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~~g~~--~--- 251 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSA--EPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL--VASFRGIN--G--- 251 (433)
T ss_pred EEEEEECCCC-CCceEeecCC--CccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE--eccCCCCc--c---
Confidence 4699999754 4444455555 4499999999 99988877643 469999998764311 11110000 0
Q ss_pred ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec-CCcCeEEEEeCCCcceeeEecccccCC
Q 022870 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGG 195 (291)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~wd~~~~~~~~~~~~~~~~~ 195 (291)
..+|+|+|+.++++.. ..+..|++||+.+++.. .+.
T Consensus 252 ------------------------------------~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt------ 288 (433)
T PRK04922 252 ------------------------------------APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT------ 288 (433)
T ss_pred ------------------------------------CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc------
Confidence 0459999988765432 22336999999887643 333
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCCc--EEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 272 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 272 (291)
.+. ....... |+|+ |+ .|+..+ .+|. |+++|+.+ ++ ...+..+.......+|+|+|++|+..+.
T Consensus 289 --~~~----~~~~~~~-~spD---G~-~l~f~sd~~g~~~iy~~dl~~-g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 289 --NHF----GIDTEPT-WAPD---GK-SIYFTSDRGGRPQIYRVAASG-GS-AERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred --cCC----CCccceE-ECCC---CC-EEEEEECCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEEC
Confidence 221 1223344 9998 55 555444 4554 66677765 33 2333333344557899999999887654
Q ss_pred CC---eEEEEEcCCCcee
Q 022870 273 DQ---KIVLYNLDHSTVS 287 (291)
Q Consensus 273 dg---~i~vw~~~~~~~~ 287 (291)
++ .|.+||+.+++..
T Consensus 356 ~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCceeEEEEECCCCCeE
Confidence 33 6999999887653
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=8.2e-11 Score=96.70 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=109.4
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe---CCCeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..|.+||....+. +.+..+. ..+.+.+|+| ||+.|+..+ .+..|.+||+.+++... +........
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~--~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~~~----- 246 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSP--QPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQ--VASFPRHNG----- 246 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCC--CceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCCcC-----
Confidence 3799999865443 3343344 4599999999 999888654 24579999998764321 111111000
Q ss_pred ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccC
Q 022870 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (291)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~ 194 (291)
..+|+|||+.++++. +.+| .|++||+.+++......
T Consensus 247 ------------------------------------~~~~SPDG~~La~~~-~~~g~~~I~~~d~~tg~~~~lt~----- 284 (429)
T PRK03629 247 ------------------------------------APAFSPDGSKLAFAL-SKTGSLNLYVMDLASGQIRQVTD----- 284 (429)
T ss_pred ------------------------------------CeEECCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEccC-----
Confidence 045999998877643 2233 59999998876543322
Q ss_pred CCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCCc--EEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (291)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg~--i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (291)
.. ....... |+|+ |+ .|+..+ .++. |+++|+.+ +. ...+..+........|+|+|++|+..+
T Consensus 285 ---~~-----~~~~~~~-wSPD---G~-~I~f~s~~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 285 ---GR-----SNNTEPT-WFPD---SQ-NLAYTSDQAGRPQVYKVNING-GA-PQRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred ---CC-----CCcCceE-ECCC---CC-EEEEEeCCCCCceEEEEECCC-CC-eEEeecCCCCccCEEECCCCCEEEEEE
Confidence 11 1233444 9998 54 555444 4454 44456654 33 344444444566789999999987765
Q ss_pred CC---CeEEEEEcCCCce
Q 022870 272 AD---QKIVLYNLDHSTV 286 (291)
Q Consensus 272 ~d---g~i~vw~~~~~~~ 286 (291)
.+ ..|.+||+++++.
T Consensus 350 ~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGV 367 (429)
T ss_pred ccCCCceEEEEECCCCCe
Confidence 43 3588999988764
No 234
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.42 E-value=3.8e-13 Score=111.43 Aligned_cols=205 Identities=17% Similarity=0.242 Sum_probs=131.5
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
.++..++||.+.|+.++.+.+..++++++.|..|++|.+.++.++..+.+|.+. |++++|+| - .+.+.||++
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga--vtaiafsP--~----~sss~dgt~ 294 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA--VTAIAFSP--R----ASSSDDGTC 294 (1113)
T ss_pred hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc--eeeeccCc--c----ccCCCCCce
Confidence 567889999999999999999989999999999999999999999999999977 99999999 3 278899999
Q ss_pred EEEECCCCCCCC--CCccccccceEEEEEeecccCccc------------------------eeccCC--C---------
Q 022870 89 KCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYA------------------------NAKQAN--E--------- 131 (291)
Q Consensus 89 ~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~--~--------- 131 (291)
++||.+-..... .|...-.........+...+.... .+...+ .
T Consensus 295 ~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 295 RIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARND 374 (1113)
T ss_pred EeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeee
Confidence 999988211110 000000000000000000000000 000000 0
Q ss_pred -CceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee
Q 022870 132 -PKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM 206 (291)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (291)
....|++..+. ....+.+|.. +.++|.+..+...+| .||...|||+-.+.+++.+.. +|. .
T Consensus 375 ~~~~vwnl~~g~-l~H~l~ghsd~~yvLd~Hpfn~ri~msag-~dgst~iwdi~eg~pik~y~~-------gh~-----k 440 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQ-LLHNLMGHSDEVYVLDVHPFNPRIAMSAG-YDGSTIIWDIWEGIPIKHYFI-------GHG-----K 440 (1113)
T ss_pred eEeeeeecccch-hhhhhcccccceeeeeecCCCcHhhhhcc-CCCceEeeecccCCcceeeec-------ccc-----e
Confidence 00011111111 1112233433 889999988777555 599999999999988877763 442 3
Q ss_pred eeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
....+ |+++ |. .++....-|.++|.....
T Consensus 441 l~d~k-FSqd---gt-s~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 441 LVDGK-FSQD---GT-SIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeccc-cCCC---Cc-eEecCCCCCceEEeccCC
Confidence 33444 9998 44 777777788888887654
No 235
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=7.4e-13 Score=105.41 Aligned_cols=218 Identities=14% Similarity=0.193 Sum_probs=149.4
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCC-------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
+..+.||+..|+.++--.+.+-+++++.|.+|++|.++. ..+..++..|+ .+|.++.|.. +-++++ +
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk--k~i~~igfL~--~lr~i~--S 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK--KPIHDIGFLA--DLRSIA--S 801 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc--Ccccceeeee--ccceee--e
Confidence 567889999999998777778899999999999999763 23666777888 4599999998 645554 4
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
.||-|.+||.--++...+.....+....... .++-.-.+.+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~i---------------------------------------kcl~nv~~~i 842 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNI---------------------------------------KCLENVDRHI 842 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCcee---------------------------------------EecccCcchh
Confidence 5788999998766543311111111111110 0111112345
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
+.+.++...+|+++|.+..+-...++. ......++...+++ ..|. |. .+++|-.+|.|.+.|.++ ++
T Consensus 843 liAgcsaeSTVKl~DaRsce~~~E~kV-------cna~~Pna~~R~ia-Va~~---GN-~lAa~LSnGci~~LDaR~-G~ 909 (1034)
T KOG4190|consen 843 LIAGCSAESTVKLFDARSCEWTCELKV-------CNAPGPNALTRAIA-VADK---GN-KLAAALSNGCIAILDARN-GK 909 (1034)
T ss_pred eeeeccchhhheeeecccccceeeEEe-------ccCCCCchheeEEE-eccC---cc-hhhHHhcCCcEEEEecCC-Cc
Confidence 554557788999999999887666653 11122244555665 7776 44 899999999999999999 88
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCCCeEEE-EEcCCCcee
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVL-YNLDHSTVS 287 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v-w~~~~~~~~ 287 (291)
.+..++..+.....++ .|..+.|+....|.++.| |..-.+...
T Consensus 910 vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 910 VINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred eeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 8888887666555554 344557788888888888 876665443
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.42 E-value=5.9e-11 Score=102.57 Aligned_cols=262 Identities=13% Similarity=0.084 Sum_probs=153.4
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-------EEEEEeeecCCcceEEE-EEeecCCCC-eEEEE
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------TVSSSWVHSAAHGIVSV-ATGPSIGLN-KVISQ 82 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~-~~~~~~~~~-~l~s~ 82 (291)
.++..-..++.++.+.+.+..+|.++.||.|++.+++..+ +.+....+.. +.+.++ +|... .+. .++.+
T Consensus 1092 ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~-~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1092 LTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAI-VQSHVLVYA 1169 (1431)
T ss_pred EEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeeccccc-ccceeEEEE
Confidence 3444446788999999999999999999999999987521 1222222322 234444 34332 233 77788
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccc-cCCCCCC---cccCC
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT-DSLCDSK---DDVPA 158 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~ 158 (291)
...+.|..||++.....+......+.+.......++..... ......+...+||++-.-.+.. ..+.+.. +..+|
T Consensus 1170 T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wl-viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~ 1248 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWL-VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCP 1248 (1431)
T ss_pred EeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEE-EEecCCceEEEEEeecCceeecccCcccCCcceEEeec
Confidence 88899999999987665533333444444444444333322 2223344577788877664443 3333333 44444
Q ss_pred CCC--cEEEEecC-CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcc-----eeeeeE-EEecCCCCCCceEEEeecC
Q 022870 159 EGP--KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR-----GMCMAV-QAYLPSKSQGFVNVLAGYE 229 (291)
Q Consensus 159 ~~~--~~~~~~g~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~p~~~~g~~~l~~g~~ 229 (291)
.-+ ...+++|+ ..+.|.+|++.++.+...+-.....+.-.+..+.+ ...... +++... +. ++++|+.
T Consensus 1249 ~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~---~~-~~ltggs 1324 (1431)
T KOG1240|consen 1249 TYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK---NG-FLLTGGS 1324 (1431)
T ss_pred cCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC---Cc-eeeecCC
Confidence 332 44554555 67899999999997766654321111111111111 111111 112211 22 8999999
Q ss_pred CCcEEEEEccCCCCc-----------------------------------------------eee--------ccccccc
Q 022870 230 DGSILVWDIRNPGIP-----------------------------------------------LTA--------MKVHLEP 254 (291)
Q Consensus 230 dg~i~vwd~~~~~~~-----------------------------------------------~~~--------~~~h~~~ 254 (291)
|..|+.||...+... ... -..|.++
T Consensus 1325 d~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~ 1404 (1431)
T KOG1240|consen 1325 DMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDP 1404 (1431)
T ss_pred ccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccch
Confidence 999999998653211 000 0147778
Q ss_pred eeEEEee-cCCCeeEEecCCCeEEEEE
Q 022870 255 VLCLSID-ESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 255 v~~~~~~-~~~~~l~s~s~dg~i~vw~ 280 (291)
|++|++- .+..+|++++.||.|+||.
T Consensus 1405 Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhccCccEEEEecCCCeeeecC
Confidence 9999882 2356889999999999994
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.3e-11 Score=97.13 Aligned_cols=177 Identities=15% Similarity=0.077 Sum_probs=111.3
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---CCeEEEEECCCCCCCCCCccccccceEEEEEe
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKL 116 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
..|.+||.. +.....+..+. ..+.+.+|+| ||+.|+..+. +..|.+||+.+++... +...... ..
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~--~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~--l~~~~g~--~~--- 249 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGS--SLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL--VGNFPGM--TF--- 249 (435)
T ss_pred eEEEEECCC-CCCcEEEecCC--CCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE--eecCCCc--cc---
Confidence 478899975 44444555555 4499999999 9998887653 4689999998764311 1000000 00
Q ss_pred ecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccC
Q 022870 117 SLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCG 194 (291)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~ 194 (291)
..+|+|+|+.++++ .+.++ .|.+||+.+++. ..+.
T Consensus 250 ------------------------------------~~~~SPDG~~la~~-~~~~g~~~Iy~~d~~~~~~-~~Lt----- 286 (435)
T PRK05137 250 ------------------------------------APRFSPDGRKVVMS-LSQGGNTDIYTMDLRSGTT-TRLT----- 286 (435)
T ss_pred ------------------------------------CcEECCCCCEEEEE-EecCCCceEEEEECCCCce-EEcc-----
Confidence 05599999887654 33344 478889987764 3343
Q ss_pred CCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (291)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (291)
.+. ....... |+|+ |+ .|+..+ .+| .|+++|+.. +. ...+..+...+....|+|+|+.|+..+
T Consensus 287 ---~~~----~~~~~~~-~spD---G~-~i~f~s~~~g~~~Iy~~d~~g-~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 287 ---DSP----AIDTSPS-YSPD---GS-QIVFESDRSGSPQLYVMNADG-SN-PRRISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred ---CCC----CccCcee-EcCC---CC-EEEEEECCCCCCeEEEEECCC-CC-eEEeecCCCcccCeEECCCCCEEEEEE
Confidence 221 1233344 9998 54 555444 343 688888764 33 344444455667789999999998765
Q ss_pred CC---CeEEEEEcCCCc
Q 022870 272 AD---QKIVLYNLDHST 285 (291)
Q Consensus 272 ~d---g~i~vw~~~~~~ 285 (291)
.+ ..|.+||+.++.
T Consensus 353 ~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cCCCceEEEEEECCCCc
Confidence 43 368888886544
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.41 E-value=3.9e-12 Score=94.87 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=121.1
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeCCCeEEEEECCCCCCCCC
Q 022870 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSN 101 (291)
Q Consensus 23 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~ 101 (291)
-++|||+|+++|+++.- .+.|-|.++-+..+.+..- +.|.-+.|.. |.-+ |.....|+.|.+|++...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~c- 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYC- 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeec--cceeeeeeeeccceEEEEEeecceeEE-
Confidence 36899999999998765 7888888876655444332 3488899987 6544 4467789999999998765422
Q ss_pred CccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (291)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~ 181 (291)
.+...+..... ++|+|+|+.++. +.+.|-.|.+|.+.+
T Consensus 86 ---kIdeg~agls~--------------------------------------~~WSPdgrhiL~-tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 86 ---KIDEGQAGLSS--------------------------------------ISWSPDGRHILL-TSEFDLRITVWSLNT 123 (447)
T ss_pred ---EeccCCCccee--------------------------------------eeECCCcceEee-eecceeEEEEEEecc
Confidence 22222111110 559999998887 556689999999988
Q ss_pred cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---------------------------------
Q 022870 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--------------------------------- 228 (291)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~--------------------------------- 228 (291)
.+....-- . +..+-.+ +|+|+ |+ +.+..+
T Consensus 124 ~~~~~~~~----------p---K~~~kg~-~f~~d---g~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltgie 185 (447)
T KOG4497|consen 124 QKGYLLPH----------P---KTNVKGY-AFHPD---GQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIE 185 (447)
T ss_pred ceeEEecc----------c---ccCceeE-EECCC---Cc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCce
Confidence 76543221 1 1112233 38877 44 443332
Q ss_pred ---CCCcEEEEEccCCCCceeeccccc-cceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 229 ---EDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 229 ---~dg~i~vwd~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
++..+.|||--- .-.+ +..|. -.+..++|+|.+++|+.|+.|+.+||-+
T Consensus 186 WsPdg~~laVwd~~L-eykv--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 186 WSPDGNWLAVWDNVL-EYKV--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ECCCCcEEEEecchh-hhee--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 123455555332 1111 12222 4688899999999999999999998855
No 239
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.3e-12 Score=97.28 Aligned_cols=171 Identities=18% Similarity=0.149 Sum_probs=118.7
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC---C-eEE-EEeC
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL---N-KVI-SQGR 84 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~l~-s~~~ 84 (291)
.+.....|.++|.+|.|+|||++|++-+.| ..+||+.+++..+..............+.|+. ++ . +++ ....
T Consensus 178 t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~ 254 (398)
T KOG0771|consen 178 TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFP 254 (398)
T ss_pred hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCC
Confidence 344556799999999999999999999999 89999999997777665443335577888887 54 2 222 3344
Q ss_pred CCeEEEEECCCCCCCC--CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCc
Q 022870 85 DGTVKCWDIENGGLSS--NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
-+.|+.||+..-+... +....+.......+ ++.+++|+.
T Consensus 255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs---------------------------------------l~VS~dGkf 295 (398)
T KOG0771|consen 255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISS---------------------------------------LAVSDDGKF 295 (398)
T ss_pred CCceeEEEeeeeccccccchhhhhhccCccee---------------------------------------EEEcCCCcE
Confidence 5667777765332110 00000111101111 668889875
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
+. -|+.||.|-+++..+.+.++..+. .| ...++.+. |+|+.. ++++-+.+..+.|..+.-
T Consensus 296 ~A--lGT~dGsVai~~~~~lq~~~~vk~-------aH----~~~VT~lt-F~Pdsr----~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LA--LGTMDGSVAIYDAKSLQRLQYVKE-------AH----LGFVTGLT-FSPDSR----YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EE--EeccCCcEEEEEeceeeeeEeehh-------hh----eeeeeeEE-EcCCcC----cccccccCCceeEEEEee
Confidence 44 577799999999999988888775 45 56889998 999843 788888888888887753
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.4e-10 Score=94.36 Aligned_cols=202 Identities=12% Similarity=0.069 Sum_probs=115.8
Q ss_pred ecCCccceeEEEEcCCCCEEEEecCC---CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCe--
Q 022870 14 LRGHRASVTDVCFHQTKPILFAGTTG---GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT-- 87 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~-- 87 (291)
+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +.... ......+|+| ||+.|+ +.+.+|.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~--g~~~~~~wSP--DG~~La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP--GINGAPRFSP--DGKKLALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC--CCcCCeeECC--CCCEEEEEEeCCCCeE
Confidence 33345667889999999988766432 368899998776533 22222 2245789999 998776 4566665
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
|.++|+.+++... +....... ...+|+|+|+.+++++
T Consensus 288 Iy~~dl~tg~~~~-----lt~~~~~~--------------------------------------~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 288 IYVVDIATKALTR-----ITRHRAID--------------------------------------TEPSWHPDGKSLIFTS 324 (448)
T ss_pred EEEEECCCCCeEE-----CccCCCCc--------------------------------------cceEECCCCCEEEEEE
Confidence 7777887664321 11100000 0045999998876643
Q ss_pred cCCc--CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCC
Q 022870 168 GEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGI 243 (291)
Q Consensus 168 g~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~ 243 (291)
..+ ..|.++|+.+++... +... +. ...... |+|+ |+.++++...++ .|.++|+.+ +.
T Consensus 325 -~~~g~~~Iy~~dl~~g~~~~-Lt~~------g~------~~~~~~-~SpD---G~~l~~~~~~~g~~~I~~~dl~~-g~ 385 (448)
T PRK04792 325 -ERGGKPQIYRVNLASGKVSR-LTFE------GE------QNLGGS-ITPD---GRSMIMVNRTNGKFNIARQDLET-GA 385 (448)
T ss_pred -CCCCCceEEEEECCCCCEEE-EecC------CC------CCcCee-ECCC---CCEEEEEEecCCceEEEEEECCC-CC
Confidence 333 357777887766432 2210 11 112233 9998 552444444444 456677776 43
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCC-C--eEEEEEcCCC
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHS 284 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d-g--~i~vw~~~~~ 284 (291)
. ..+... .......|+|+|+.|+..+.+ | .+.+++.+..
T Consensus 386 ~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 386 M-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred e-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 3 333322 122345799999988765543 3 3777787543
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.3e-11 Score=91.78 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=125.2
Q ss_pred cceeEEEEcC-CCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecC-------CcceEEEEEeecCCCCeEEEEeCCCeE
Q 022870 19 ASVTDVCFHQ-TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTV 88 (291)
Q Consensus 19 ~~v~~l~~~~-~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~s~~~dg~i 88 (291)
..+..|.-++ +..++|+|+.. ..++|||+++.+.+.+-+.-.. +-.++++.|.+..+...|+++..-+.|
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 3455566666 34466779998 8899999998755544322111 123578889882226899999999999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
++||.+.++ .|+..+......... +...|++..++ +|
T Consensus 229 R~YDt~~qR---RPV~~fd~~E~~is~--------------------------------------~~l~p~gn~Iy--~g 265 (412)
T KOG3881|consen 229 RLYDTRHQR---RPVAQFDFLENPISS--------------------------------------TGLTPSGNFIY--TG 265 (412)
T ss_pred EEecCcccC---cceeEeccccCccee--------------------------------------eeecCCCcEEE--Ee
Confidence 999999664 334333322111110 34668887655 56
Q ss_pred CCcCeEEEEeCCCcceeeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 169 EQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
..-+.+..||++.++.... +. + ..+.+.++. .+|..+ ++++++-|..|||+|+.+ .+++..
T Consensus 266 n~~g~l~~FD~r~~kl~g~~~k--------g----~tGsirsih-~hp~~~----~las~GLDRyvRIhD~kt-rkll~k 327 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCGLK--------G----ITGSIRSIH-CHPTHP----VLASCGLDRYVRIHDIKT-RKLLHK 327 (412)
T ss_pred cccchhheecccCceeeccccC--------C----ccCCcceEE-EcCCCc----eEEeeccceeEEEeeccc-chhhhh
Confidence 6679999999999987765 43 3 356677776 888743 999999999999999998 676655
Q ss_pred ccccccceeEEEeecC
Q 022870 248 MKVHLEPVLCLSIDES 263 (291)
Q Consensus 248 ~~~h~~~v~~~~~~~~ 263 (291)
..- ...+++|.+.++
T Consensus 328 vYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 328 VYV-KSRLTFILLRDD 342 (412)
T ss_pred hhh-hccccEEEecCC
Confidence 443 456677777543
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=2.7e-11 Score=102.78 Aligned_cols=197 Identities=15% Similarity=0.206 Sum_probs=139.1
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE---EEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV---SVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
|....+..+...++.++.+..+.+||...+.....+..... .... -+.+++ +.-++++|+.-+.|.+|+....+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-CTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce-EEEEeEEEEeccC--cEEEEEeccccccEEEEeccccC
Confidence 34444455666888888899999999887766655543321 1112 222344 44688899999999999988332
Q ss_pred CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (291)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w 177 (291)
. +. .+..+.. ..|+ +.++-+|.+++ +.+.|.++++|
T Consensus 167 ~---p~-~l~GHeG--~iF~------------------------------------i~~s~dg~~i~--s~SdDRsiRlW 202 (967)
T KOG0974|consen 167 K---PI-RLKGHEG--SIFS------------------------------------IVTSLDGRYIA--SVSDDRSIRLW 202 (967)
T ss_pred C---cc-eecccCC--ceEE------------------------------------EEEccCCcEEE--EEecCcceeee
Confidence 1 12 1111111 1111 44777887665 66789999999
Q ss_pred eCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc-cee
Q 022870 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVL 256 (291)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~ 256 (291)
++.+.+.....-. +| ...++.+. |.|+ .++++++|.+.++|+.. +..+..+.+|.. .++
T Consensus 203 ~i~s~~~~~~~~f-------gH----saRvw~~~-~~~n------~i~t~gedctcrvW~~~--~~~l~~y~~h~g~~iw 262 (967)
T KOG0974|consen 203 PIDSREVLGCTGF-------GH----SARVWACC-FLPN------RIITVGEDCTCRVWGVN--GTQLEVYDEHSGKGIW 262 (967)
T ss_pred ecccccccCcccc-------cc----cceeEEEE-eccc------eeEEeccceEEEEEecc--cceehhhhhhhhccee
Confidence 9999876651111 55 55677876 9987 89999999999999776 566668888864 699
Q ss_pred EEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 257 CLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
.++.+++...++|++.|+.+++|++...
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999999999999998754
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.3e-11 Score=97.07 Aligned_cols=204 Identities=13% Similarity=0.166 Sum_probs=139.4
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 101 (291)
..++++.-..-|+.++....|.-.+++.|..+..+...... +.+|..++ ...+|++|+.+|.|..||.++......
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~--lN~v~in~--~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGE--LNVVSINE--EHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccccccccccccc--ceeeeecC--ccceEEecccCceEEEecchhhhhhee
Confidence 45666654444555666667989999999999888876644 99999999 768889999999999999998765431
Q ss_pred Cccc--cccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870 102 PSLT--IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (291)
Q Consensus 102 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~ 179 (291)
.-.. +...+..... ..-+.+.|+-+|-.+ +.|..+|.+.|||+
T Consensus 213 l~~~~~v~s~pg~~~~---------------------------------~svTal~F~d~gL~~--aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAA---------------------------------PSVTALKFRDDGLHV--AVGTSTGSVLIYDL 257 (703)
T ss_pred eecccccCCCcccccc---------------------------------CcceEEEecCCceeE--EeeccCCcEEEEEc
Confidence 0000 0000000000 000005577776433 36777999999999
Q ss_pred CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE
Q 022870 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS 259 (291)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 259 (291)
++.+++..-. |.. ..++..+. |.+.+ ++..+++ .....++|||-.+ +++...+.. ...++.+|
T Consensus 258 Ra~~pl~~kd---------h~~--e~pi~~l~-~~~~~--~q~~v~S-~Dk~~~kiWd~~~-Gk~~asiEp-t~~lND~C 320 (703)
T KOG2321|consen 258 RASKPLLVKD---------HGY--ELPIKKLD-WQDTD--QQNKVVS-MDKRILKIWDECT-GKPMASIEP-TSDLNDFC 320 (703)
T ss_pred ccCCceeecc---------cCC--ccceeeec-ccccC--CCceEEe-cchHHhhhccccc-CCceeeccc-cCCcCcee
Confidence 9998876554 322 34556665 87762 3324444 4567899999998 888888876 44599999
Q ss_pred eecCCCeeEEecCCCeEEEEEc
Q 022870 260 IDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
+-|++-+++++-.++.+..|=+
T Consensus 321 ~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 321 FVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred eecCCceEEEecCCCcceeEEc
Confidence 9999889999988877766544
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=8e-10 Score=90.64 Aligned_cols=210 Identities=10% Similarity=0.107 Sum_probs=116.3
Q ss_pred ecCCccceeEEEEcCCCCEE---EEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC-
Q 022870 14 LRGHRASVTDVCFHQTKPIL---FAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG- 86 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l---~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg- 86 (291)
+......+..=+|+|||+.+ ++...+ ..|.+.++..++...... ... .....+|+| ||+.|+..+. +|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g--~~~~p~wSP--DG~~Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG--NQLMPTFSP--RKKLLAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC--CccceEECC--CCCEEEEEECCCCC
Confidence 33344556777999998742 344444 357788888775443322 222 256789999 9988875442 23
Q ss_pred ---eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 87 ---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 87 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
.+..|++..+.... +. .+..... .. ....+|+|||+.+
T Consensus 255 ~di~~~~~~~~~g~~g~-~~-~lt~~~~-----~~--------------------------------~~~p~wSPDG~~L 295 (428)
T PRK01029 255 PDLFIQSFSLETGAIGK-PR-RLLNEAF-----GT--------------------------------QGNPSFSPDGTRL 295 (428)
T ss_pred cceeEEEeecccCCCCc-ce-EeecCCC-----CC--------------------------------cCCeEECCCCCEE
Confidence 34446665431100 00 0000000 00 0004599999887
Q ss_pred EEEecCCcCeEEEE--eCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ecCC--CcEEEEE
Q 022870 164 MAVAGEQLSEVEIW--DLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYED--GSILVWD 237 (291)
Q Consensus 164 ~~~~g~~d~~i~~w--d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~~d--g~i~vwd 237 (291)
+.++ ..+|...+| ++.. +.....+. .+ ........ |+|+ |+ .|+. +..+ ..|++||
T Consensus 296 af~s-~~~g~~~ly~~~~~~~g~~~~~lt--------~~----~~~~~~p~-wSPD---G~-~Laf~~~~~g~~~I~v~d 357 (428)
T PRK01029 296 VFVS-NKDGRPRIYIMQIDPEGQSPRLLT--------KK----YRNSSCPA-WSPD---GK-KIAFCSVIKGVRQICVYD 357 (428)
T ss_pred EEEE-CCCCCceEEEEECcccccceEEec--------cC----CCCcccee-ECCC---CC-EEEEEEcCCCCcEEEEEE
Confidence 7643 345654555 4432 22233333 11 11223444 9998 55 4544 4333 4699999
Q ss_pred ccCCCCceeeccccccceeEEEeecCCCeeEEecC---CCeEEEEEcCCCcee
Q 022870 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTVS 287 (291)
Q Consensus 238 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~---dg~i~vw~~~~~~~~ 287 (291)
+.+ ++. ..+......+....|+|+|+.|+..+. +..|.+||+.+++..
T Consensus 358 l~~-g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 358 LAT-GRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCC-CCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 987 443 344333445678999999998864332 357899999887653
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=6.7e-11 Score=86.97 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=132.3
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
..++.|++.+..++++..+|.+.+-+...... ++.++.|.-+ ++-..|+.. +.+.+++|+.|+.+..||++-.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeeeecccC-CCceEEecCCCceEEEEEecCCcc
Confidence 45678888888899999999999666544433 3367888855 999999875 447899999999999999993321
Q ss_pred CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
+..+....+...+.. +.-+|..+..++ +|+.|..|++||
T Consensus 201 -----~i~~n~kvH~~GV~S-----------------------------------I~ss~~~~~~I~-TGsYDe~i~~~D 239 (339)
T KOG0280|consen 201 -----FIWHNSKVHTSGVVS-----------------------------------IYSSPPKPTYIA-TGSYDECIRVLD 239 (339)
T ss_pred -----eeeecceeeecceEE-----------------------------------EecCCCCCceEE-Eeccccceeeee
Confidence 111111111111100 112233344444 899999999999
Q ss_pred CCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-C---ceeecccccc
Q 022870 179 LNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-I---PLTAMKVHLE 253 (291)
Q Consensus 179 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-~---~~~~~~~h~~ 253 (291)
.|+ ++++..-. ..+-++.+. ++|... + .++.++.-.-.+|-+..... + .....+.|.+
T Consensus 240 tRnm~kPl~~~~-------------v~GGVWRi~-~~p~~~-~--~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 240 TRNMGKPLFKAK-------------VGGGVWRIK-HHPEIF-H--RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred hhcccCccccCc-------------cccceEEEE-ecchhh-h--HHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 994 55554333 457889888 998743 2 34555555557777776522 2 2344567777
Q ss_pred ceeEEEeecCCCeeEEec-CCCeEE-EEEcCCC
Q 022870 254 PVLCLSIDESCNGGISGG-ADQKIV-LYNLDHS 284 (291)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s-~dg~i~-vw~~~~~ 284 (291)
-...-.|+....+|+|++ .|+.++ +|-.-++
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 777778866556788876 477755 8865443
No 246
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=1.3e-10 Score=86.44 Aligned_cols=260 Identities=16% Similarity=0.238 Sum_probs=150.9
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-----EEEEEeeecCC----------cceEEEEEeecCCCCeEEE
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVIS 81 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s 81 (291)
..+-|+++.|...|.+|++|...|.|.++.-+... ....++.|..+ +.|..+.|........++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999855422 12224444311 3478888876222346777
Q ss_pred EeCCCeEEEEECCCCCCCC---------------CCcc--------cc----------------ccceEEEEEeecccCc
Q 022870 82 QGRDGTVKCWDIENGGLSS---------------NPSL--------TI----------------KTNSYHFCKLSLVKEP 122 (291)
Q Consensus 82 ~~~dg~i~iwd~~~~~~~~---------------~~~~--------~~----------------~~~~~~~~~~~~~~~~ 122 (291)
.+.|.+|++|.+....... .|+. .+ ..++.+...+++....
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999986542110 0000 00 1112222222222222
Q ss_pred cceeccCCCCceeeecccCcc--ccccCCCCCC---------cccCCCCCcEEEEecCCcCeEEEEeCCCccee----eE
Q 022870 123 YANAKQANEPKDCYEREVGET--VDTDSLCDSK---------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TR 187 (291)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~----~~ 187 (291)
......+......|.+..... -......|.- ..|+|....++..+.+ .|.|++-|+|+.... ..
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-kG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-KGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-CCcEEehhhhhhhhccCchhh
Confidence 233333444444454432211 1111111111 6789988777776655 699999999965321 11
Q ss_pred ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc------------cce
Q 022870 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL------------EPV 255 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~------------~~v 255 (291)
+.....+............+..+. |+|+ |+ ++++-. --+|++||.+....|+.+..-|. +.|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~k-Fs~n---gr-yIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFK-FSDN---GR-YILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceE-EcCC---Cc-EEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 111000000011122344566777 9987 55 665543 45899999998778888775553 233
Q ss_pred ---eEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 256 ---LCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 256 ---~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
..+.|+.+...+.+||..+..-++-..+
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeecccc
Confidence 3577899999999999988888887543
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.5e-10 Score=87.00 Aligned_cols=252 Identities=15% Similarity=0.200 Sum_probs=152.7
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeC-CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~ 87 (291)
..+..++||.+.|+....-|...-+++.+.|.++|||-- +.++.-..+. |.-+.+++++.+.+ +...|+.|-..|+
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEecce
Confidence 457889999999999998887778999999999999953 3344333332 44447799999999 8889999999999
Q ss_pred EEEEECCCCCCCCCC--ccccccceEEEEEeecccCccceeccCCCCceeee-cccCccccc-cCCCCCCcccCCCCCcE
Q 022870 88 VKCWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYE-REVGETVDT-DSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 88 i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (291)
+.-+.+...--.... ....+........++....... ...-...-.|. .+....... .+.. .+-.++-...
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~--s~~~dk~~~~hc~e~~~~lg~Y~~~~---~~t~~~~d~~ 166 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVL--STGKDKQFAWHCTESGNRLGGYNFET---PASALQFDAL 166 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEE--EeccccceEEEeeccCCcccceEeec---cCCCCceeeE
Confidence 998876532111000 1111111111111111111100 00000000010 000000000 0000 0000111111
Q ss_pred EEEecCCcCeEEEEeCCCc--ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC
Q 022870 164 MAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~ 241 (291)
.+..|...|.|.+-.+... .++.++. +| .+.+.++. |.|.. + .|.+|..|..+.+||+--.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~--------~h----~~~~~~l~-Wd~~~---~-~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFN--------GH----TGEVTCLK-WDPGQ---R-LLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEc--------Cc----ccceEEEE-EcCCC---c-EEEeccccCceEEEeccCC
Confidence 2224555566655544332 3445555 55 45667776 98862 2 8999999999999999864
Q ss_pred CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
......+.+|...|..++.-+.-+.|++++.||.|-+|+++-.+
T Consensus 230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 55667889999999999998888899999999999999997654
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.33 E-value=4.7e-10 Score=84.00 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=70.8
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
++|++|..++..-....-+.+-+||++..+....+.. ...+.+.. |.|..+ .|+.+.....+
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-------------k~piraf~-WdP~~p----rL~vctg~srL 385 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-------------KHPIRAFE-WDPGRP----RLVVCTGKSRL 385 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-------------ccceeEEE-eCCCCc----eEEEEcCCceE
Confidence 9999998654433333346699999998776555542 34566666 999754 56666667779
Q ss_pred EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC
Q 022870 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 274 (291)
++|...- ...+ ......-.|..++|..+|..++-.+.|.
T Consensus 386 Y~W~psg-~~~V-~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 386 YFWAPSG-PRVV-GVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEcCCC-ceEE-ecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 9999874 3333 2333346799999999999999999885
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1e-09 Score=87.59 Aligned_cols=238 Identities=16% Similarity=0.221 Sum_probs=142.3
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-----EeCCCeEEEEECCCC
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRDGTVKCWDIENG 96 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~ 96 (291)
++..|++|..+.| --..+.+.+|+..+.+... -+.|. ..|..+.++|......+++ .|.-+.|+||.....
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~--~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSV--SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCcccee-eeeec--cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 5788888774433 3345689999987643322 22344 4489999998322234442 455668999998732
Q ss_pred CCCCCCcc--ccccceEEEEEeecccCc-----------cceeccCCCCceeeecccCccccccCCCCCC---cccCCCC
Q 022870 97 GLSSNPSL--TIKTNSYHFCKLSLVKEP-----------YANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG 160 (291)
Q Consensus 97 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 160 (291)
..-. ++- ++.........+...... ..........+..+.++ +......+..... +.|+|++
T Consensus 205 ~~~~-~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 205 GQHQ-PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSG 282 (566)
T ss_pred cccc-hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCC
Confidence 2111 110 111111111111111111 11111222233334444 2222223332222 8999999
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC--CCcEEEEEc
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSILVWDI 238 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~--dg~i~vwd~ 238 (291)
..+.++-|..-..+.+||++ +.++..+.. +.-.++- |+|. |+..+++|-. -|.|.|||+
T Consensus 283 ~EF~VvyGfMPAkvtifnlr-~~~v~df~e--------------gpRN~~~-fnp~---g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 283 REFAVVYGFMPAKVTIFNLR-GKPVFDFPE--------------GPRNTAF-FNPH---GNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CEEEEEEecccceEEEEcCC-CCEeEeCCC--------------CCccceE-ECCC---CCEEEEeecCCCCCceEEEec
Confidence 99999999999999999997 556776652 2333443 9998 6534444433 489999999
Q ss_pred cCCCCceeeccccccceeEEEeecCCCeeEEecC------CCeEEEEEcCCCcee
Q 022870 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVLYNLDHSTVS 287 (291)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~------dg~i~vw~~~~~~~~ 287 (291)
.+ .+.+..+..- .-+-+.|+|||.+++|+.. |+.++||++....+.
T Consensus 344 ~n-~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 344 PN-RKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cc-hhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 98 8888888753 3456789999999988764 788999999876554
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.9e-10 Score=91.95 Aligned_cols=180 Identities=15% Similarity=0.102 Sum_probs=111.9
Q ss_pred CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (291)
Q Consensus 39 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
...|.++|....+ ...+..+. ..+.+.+|+| +|++|+.+..+ ..|++||+.+++... +.........
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~--~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~~~~~~~~~--- 238 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSR--EPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK--VASFPGMNGA--- 238 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCC--CceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE--eecCCCCccc---
Confidence 3468888875443 34444444 3489999999 99998876643 479999998764311 1001000000
Q ss_pred eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-CcCeEEEEeCCCcceeeEecccccC
Q 022870 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCG 194 (291)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~~wd~~~~~~~~~~~~~~~~ 194 (291)
.+|+|+|+.++++... .+..|++||+.+++.. .+.
T Consensus 239 --------------------------------------~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~----- 274 (417)
T TIGR02800 239 --------------------------------------PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT----- 274 (417)
T ss_pred --------------------------------------eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC-----
Confidence 4599999877654322 2345899999876543 332
Q ss_pred CCCCCCCCcceeeeeEEEecCCCCCCceEEE-eecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL-AGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (291)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~-~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (291)
.+.. ...... |+|+ |+ .|+ +...++ .|+++|+.+ ++ ...+..+...+....|+|++++|+.++
T Consensus 275 ---~~~~----~~~~~~-~s~d---g~-~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 275 ---NGPG----IDTEPS-WSPD---GK-SIAFTSDRGGSPQIYMMDADG-GE-VRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred ---CCCC----CCCCEE-ECCC---CC-EEEEEECCCCCceEEEEECCC-CC-EEEeecCCCCccCeEECCCCCEEEEEE
Confidence 1211 122334 9987 55 454 443344 588888775 33 344444556678889999999998888
Q ss_pred CCC---eEEEEEcCCCce
Q 022870 272 ADQ---KIVLYNLDHSTV 286 (291)
Q Consensus 272 ~dg---~i~vw~~~~~~~ 286 (291)
.++ .|.+||+.++..
T Consensus 341 ~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE 358 (417)
T ss_pred ccCCceEEEEEeCCCCCe
Confidence 776 799999887543
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=8.3e-10 Score=88.54 Aligned_cols=194 Identities=16% Similarity=0.151 Sum_probs=129.4
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC-CcceEEEEEe------e------------cCCCCeEEEEeCCCeE
Q 022870 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATG------P------------SIGLNKVISQGRDGTV 88 (291)
Q Consensus 28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~------~------------~~~~~~l~s~~~dg~i 88 (291)
|...++|....||.+++||..+++....+....+ .+..++..|. | ..+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766643211 1224444442 2 1133467778888999
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
.+|++..++... .+.-..+...... +.++.+ -..+- ++
T Consensus 83 ~~ys~~~g~it~--~~st~~h~~~v~~--------------------------------------~~~~~~-~~ciy-S~ 120 (541)
T KOG4547|consen 83 LLYSVAGGEITA--KLSTDKHYGNVNE--------------------------------------ILDAQR-LGCIY-SV 120 (541)
T ss_pred EEEEecCCeEEE--EEecCCCCCccee--------------------------------------eecccc-cCceE-ec
Confidence 999998886533 1111111111110 112222 23344 56
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
+.|+.+..|+....+.+..+.. ....+.+++ ++|+ |. .+++++ +.|.+||+++ .+.+..|
T Consensus 121 ~ad~~v~~~~~~~~~~~~~~~~------------~~~~~~sl~-is~D---~~-~l~~as--~~ik~~~~~~-kevv~~f 180 (541)
T KOG4547|consen 121 GADLKVVYILEKEKVIIRIWKE------------QKPLVSSLC-ISPD---GK-ILLTAS--RQIKVLDIET-KEVVITF 180 (541)
T ss_pred CCceeEEEEecccceeeeeecc------------CCCccceEE-EcCC---CC-EEEecc--ceEEEEEccC-ceEEEEe
Confidence 6699999999999988887773 233455665 9998 44 787775 5799999999 8999999
Q ss_pred cccccceeEEEeecC-----CCeeEE-ecCCCeEEEEEcCC
Q 022870 249 KVHLEPVLCLSIDES-----CNGGIS-GGADQKIVLYNLDH 283 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~-----~~~l~s-~s~dg~i~vw~~~~ 283 (291)
.+|.++|.+++|-.+ |.++.+ ...+.-+.+|-++.
T Consensus 181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999554 555554 44566688887765
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=3.3e-11 Score=94.31 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=123.6
Q ss_pred EEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcc-ceeccCCC
Q 022870 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY-ANAKQANE 131 (291)
Q Consensus 53 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 131 (291)
...+..|.+. |..+.|+. .|..|++|+.|..|.+||+...+.... ....+........|-+..... .......+
T Consensus 135 ~~kL~~H~Gc--VntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l~-f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 135 QKKLNKHKGC--VNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKLS-FESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hhcccCCCCc--cceeeecc--cCceeeccCccceEEeehhhccCcccc-cccccccchhhhhccCCCCCcCceeccccC
Confidence 3445677755 99999999 899999999999999999987754321 001111111111111111110 11111111
Q ss_pred Cceeee-cccCccc-cccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccC-----------
Q 022870 132 PKDCYE-REVGETV-DTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG----------- 194 (291)
Q Consensus 132 ~~~~~~-~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~----------- 194 (291)
....-. +..+... ...+..|.. ++.-|+.++-|.++| .|+.+.-+|++...+...+....-.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g-eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG-EDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccc-cccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 111111 1222222 222333333 888898888888555 5999999999876554333211000
Q ss_pred --CC--------------------CCCCCCcce----------------eeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 195 --GS--------------------PNFSSKGRG----------------MCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 195 --~~--------------------~~~~~~~~~----------------~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
+. ..+....++ .++++. |+.++. -|++...|-.|+++
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~-Ysh~~s----ElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV-YSHDGS----ELLASYNDEDIYLF 363 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE-ecCCcc----ceeeeecccceEEe
Confidence 00 000000111 123343 444321 34455555566666
Q ss_pred EccCC-C----------Cceee-cccccc--ceeEEEe-ecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 237 DIRNP-G----------IPLTA-MKVHLE--PVLCLSI-DESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 237 d~~~~-~----------~~~~~-~~~h~~--~v~~~~~-~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
..... + ..+.. +++|.. .|.++.| -|...|+++||.-|.|.||+-.++++++-
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 33210 1 11222 677754 5888887 78899999999999999999999988754
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.9e-09 Score=85.08 Aligned_cols=241 Identities=11% Similarity=0.132 Sum_probs=141.3
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEE-----EeCC-----Ce
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-----QGRD-----GT 87 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-----~~~d-----g~ 87 (291)
..+++..+++++|+++|.+ .+..++|++......+.+.... . +.++.|+| .+++|.+ ...+ -.
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~--~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--K--TYDLLFSP--KGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--e--eeeeeecc--cccccccccccccccCCCCCCCc
Confidence 4457889999999877765 4568999998888655544433 2 89999999 7787765 1222 34
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC------------------
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL------------------ 149 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 149 (291)
+++|+++++..........+. .....++.+. ...+...+.....++....+.+...+.
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQN--GWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred eeeeeeccceehhheehhhhc--Ccccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceE
Confidence 779999884322110001110 0000010000 000011111111111111111110000
Q ss_pred ----------------------------------CCCC--cccCCCCCcEEEEec-CC---------cCeEEEEeCCCcc
Q 022870 150 ----------------------------------CDSK--DDVPAEGPKYMAVAG-EQ---------LSEVEIWDLNTAE 183 (291)
Q Consensus 150 ----------------------------------~~~~--~~~~~~~~~~~~~~g-~~---------d~~i~~wd~~~~~ 183 (291)
.... +.|++-|.-+|+.+. .- +.+++++++....
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 0000 555555555444332 11 2356666666444
Q ss_pred eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecC
Q 022870 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES 263 (291)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~ 263 (291)
+...+. ..+++.++. |+|++. +..++-|.+=-.+.|||++ +.++..+. .++=+++-|+|.
T Consensus 263 ~~V~L~-------------k~GPVhdv~-W~~s~~--EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~ 322 (566)
T KOG2315|consen 263 VSVPLL-------------KEGPVHDVT-WSPSGR--EFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPH 322 (566)
T ss_pred EEEecC-------------CCCCceEEE-ECCCCC--EEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCC
Confidence 444444 478899998 999843 2245567778899999999 78887775 577889999999
Q ss_pred CCeeEEecCC---CeEEEEEcCCCceeee
Q 022870 264 CNGGISGGAD---QKIVLYNLDHSTVSHC 289 (291)
Q Consensus 264 ~~~l~s~s~d---g~i~vw~~~~~~~~~~ 289 (291)
|++|+.+|.+ |.|-|||+.+.+++-+
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhccc
Confidence 9999888765 7899999999877643
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.25 E-value=1.1e-09 Score=82.54 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=117.3
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCC----CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTV----QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
..+++++.+.++...|+.|-..|++.-+.+. +...++....|.. +|..+-|+. ....+++.+.|..+.---.
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~--~v~~~if~~--~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA--RVSAIVFSL--THEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc--ceeeEEecC--CceeEEEeccccceEEEee
Confidence 5678999999999999999999999888654 3344555556774 499999987 6689999999988764444
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC----cccCCCCCcEEEEec
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK----DDVPAEGPKYMAVAG 168 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g 168 (291)
+.+..+..-.+........... . ........+.+....+.... .....+.+|.. ++|.+....++ +|
T Consensus 144 e~~~~lg~Y~~~~~~t~~~~d~-~-----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf--Sg 215 (404)
T KOG1409|consen 144 ESGNRLGGYNFETPASALQFDA-L-----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLF--SG 215 (404)
T ss_pred ccCCcccceEeeccCCCCceee-E-----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEE--ec
Confidence 4443322111111111000000 0 11111222222233332222 33344555655 67777765554 78
Q ss_pred CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
..|..+.+||+--.+-..-... +|...... +. +.+. -+ .+.+++.||.|.+||++.
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~-------gh~~kV~~----l~-~~~~---t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQ-------GHNDKVQA----LS-YAQH---TR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcceeeeec-------cchhhhhh----hh-hhhh---he-eeeeccCCCeEEEEeccc
Confidence 8899999999976553332221 56443333 22 3332 22 799999999999999875
No 255
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.24 E-value=2.6e-11 Score=63.75 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=36.4
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 46 (291)
++++++++|.++|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 256
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.23 E-value=2.1e-10 Score=87.79 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=67.0
Q ss_pred ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee-ccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
-.+++.++ ++||+ + +|+++..|..|+|-.... ...+.. +-||..-|..++.-++.. |+|+|.|+++++||+.
T Consensus 151 vSml~dVa-vS~D~---~-~IitaDRDEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 151 VSMLLDVA-VSPDD---Q-FIITADRDEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhheee-ecCCC---C-EEEEecCCceEEEEecCc-ccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 56888887 99984 4 999999999999988876 344444 457999999999977754 8999999999999999
Q ss_pred CCceeeee
Q 022870 283 HSTVSHCV 290 (291)
Q Consensus 283 ~~~~~~~~ 290 (291)
+++.++++
T Consensus 224 sgk~L~t~ 231 (390)
T KOG3914|consen 224 SGKLLDTC 231 (390)
T ss_pred cCCccccc
Confidence 99998764
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.23 E-value=2.8e-10 Score=82.41 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=62.1
Q ss_pred eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeec-CCCeeEEecCCCeEEEEEcCC
Q 022870 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~ 283 (291)
+.+++ -+|. .++.+++|++||.+-+||.++...+...++.|+.+++.+-|+| ++..|+++++||.+-.||..+
T Consensus 182 v~~l~-~hp~---qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALC-SHPA---QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhh-CCcc---cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 55554 6776 3348999999999999999997778888999999999999977 455799999999999999875
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=3.5e-09 Score=87.55 Aligned_cols=178 Identities=16% Similarity=0.103 Sum_probs=103.4
Q ss_pred eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CC--eEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (291)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+.++|....+. +.+.... .++.+..|+| ||+.|+..+. ++ .|.+||+.+++... +........
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~--~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~g~~~------ 265 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSP--EPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREK--VTSFPGING------ 265 (448)
T ss_pred EEEEEeCCCCCc-eEeecCC--CcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEE--ecCCCCCcC------
Confidence 677778755443 3343344 4589999999 9998886543 33 58888988764311 111110000
Q ss_pred cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccCC
Q 022870 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG 195 (291)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~ 195 (291)
..+|+|+|+.++++ .+.++ .|+++|+.+++.. .+.
T Consensus 266 -----------------------------------~~~wSPDG~~La~~-~~~~g~~~Iy~~dl~tg~~~-~lt------ 302 (448)
T PRK04792 266 -----------------------------------APRFSPDGKKLALV-LSKDGQPEIYVVDIATKALT-RIT------ 302 (448)
T ss_pred -----------------------------------CeeECCCCCEEEEE-EeCCCCeEEEEEECCCCCeE-ECc------
Confidence 04599999887664 33455 4888898877543 333
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC-
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA- 272 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~- 272 (291)
.+. ....... |+|+ |+.++++...++ .|+++|+.+ ++. ..+..........+|+|+|++|+..+.
T Consensus 303 --~~~----~~~~~p~-wSpD---G~~I~f~s~~~g~~~Iy~~dl~~-g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 303 --RHR----AIDTEPS-WHPD---GKSLIFTSERGGKPQIYRVNLAS-GKV-SRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred --cCC----CCccceE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 111 1223344 9998 542444444444 466667765 433 233222233445789999999876654
Q ss_pred CC--eEEEEEcCCCce
Q 022870 273 DQ--KIVLYNLDHSTV 286 (291)
Q Consensus 273 dg--~i~vw~~~~~~~ 286 (291)
++ .|.++|+.+++.
T Consensus 371 ~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 371 NGKFNIARQDLETGAM 386 (448)
T ss_pred CCceEEEEEECCCCCe
Confidence 34 456678777754
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=1.2e-09 Score=93.15 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=82.0
Q ss_pred EEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC
Q 022870 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~ 242 (291)
+.+.+|+.-+.|.+|+....+....+. +| .+.+.++. |+-+ |+ ++++.++|..+|+|++.+..
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~--------GH----eG~iF~i~-~s~d---g~-~i~s~SdDRsiRlW~i~s~~ 208 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLK--------GH----EGSIFSIV-TSLD---GR-YIASVSDDRSIRLWPIDSRE 208 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceec--------cc----CCceEEEE-EccC---Cc-EEEEEecCcceeeeeccccc
Confidence 444467777999999987333333344 66 66788887 8877 55 99999999999999999844
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
......-+|.+.|+.++|+|+ .++|++.|-+.++|+.+..+
T Consensus 209 ~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 209 VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred ccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce
Confidence 444477789999999999999 89999999999999665443
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=2.3e-10 Score=94.30 Aligned_cols=216 Identities=18% Similarity=0.246 Sum_probs=135.5
Q ss_pred CCCceEEecCCccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
.......+.||...|+.+-|+| ....+++++.|..|..||+.+. ..+..+.... ..-..++|+-. +++. ++.+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwnyk-~p~v-lassh 178 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNYK-DPNV-LASSH 178 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeeccc-Ccch-hhhcc
Confidence 3355678899999999999999 4568899999999999999875 3444444433 33688999873 4344 44455
Q ss_pred CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEE
Q 022870 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (291)
Q Consensus 85 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
...|++||.+.+.. |...++.+..... . ++|...-...+
T Consensus 179 g~~i~vwd~r~gs~---pl~s~K~~vs~vn--~------------------------------------~~fnr~~~s~~ 217 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGST---PLCSLKGHVSSVN--S------------------------------------IDFNRFKYSEI 217 (1081)
T ss_pred CCceEEEeccCCCc---ceEEecccceeee--h------------------------------------HHHhhhhhhhh
Confidence 56899999998763 2333433211111 0 22332222223
Q ss_pred EEecCCcCeEEEEeCCCccee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---------CCCcE
Q 022870 165 AVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---------EDGSI 233 (291)
Q Consensus 165 ~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---------~dg~i 233 (291)
. +.+.|++|+.||....... .... ...+++.-. |-|-+. |. ++.--- .+...
T Consensus 218 ~-s~~~d~tvkfw~y~kSt~e~~~~vt-------------t~~piw~~r-~~Pfg~-g~-~~mp~~G~n~v~~~~c~n~d 280 (1081)
T KOG0309|consen 218 M-SSSNDGTVKFWDYSKSTTESKRTVT-------------TNFPIWRGR-YLPFGE-GY-CIMPMVGGNMVPQLRCENSD 280 (1081)
T ss_pred c-ccCCCCceeeecccccccccceecc-------------ccCcceecc-ccccCc-ee-EeccccCCeeeeeccccchh
Confidence 3 5667999999998754322 2222 122333333 666532 33 222111 12223
Q ss_pred EEEEccCCCCceeeccccccceeEEEeec----------CCCeeEEecCCCeEEEEEcCCC
Q 022870 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDE----------SCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~----------~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
..|+..+..++++.+.||.+.|....|-. ..-.|+|-|.|..+++|-+.+.
T Consensus 281 ~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 281 LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 34555555688999999999998887721 2236899999999999998753
No 261
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=2.3e-08 Score=90.39 Aligned_cols=227 Identities=14% Similarity=0.061 Sum_probs=131.6
Q ss_pred eeEEEEcCCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeeec--------C-------CcceEEEEEeecCCC-CeEEEEe
Q 022870 21 VTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHS--------A-------AHGIVSVATGPSIGL-NKVISQG 83 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~--------~-------~~~v~~~~~~~~~~~-~~l~s~~ 83 (291)
-..+++++++..|+.+ ..++.|+++|..++. +.++.+.. . -..-..++++| ++ ..+++.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp--~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEP--VNEKVYIAMA 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEec--CCCeEEEEEC
Confidence 4778899887765554 456789999987654 33332110 0 01136789998 44 4556667
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
.++.|++||..++... .+..... .. ...........+..-..++++|++..+
T Consensus 703 ~~~~I~v~d~~~g~v~-----~~~G~G~-~~----------------------~~~g~~~~~~~~~~P~GIavspdG~~L 754 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-----VFSGDGY-ER----------------------NLNGSSGTSTSFAQPSGISLSPDLKEL 754 (1057)
T ss_pred CCCeEEEEECCCCeEE-----EEecCCc-cc----------------------cCCCCccccccccCccEEEEeCCCCEE
Confidence 7889999998765321 0000000 00 000000000001111118899999877
Q ss_pred EEEecCCcCeEEEEeCCCcceeeEecc-----cccCCCCCCCC----CcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 164 MAVAGEQLSEVEIWDLNTAERCTRLHQ-----NSCGGSPNFSS----KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
++ +.+.++.|++||+.++........ ........... ..-.....+. +.++ |. ++++-..++.|+
T Consensus 755 YV-ADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~d---G~-LYVADs~N~rIr 828 (1057)
T PLN02919 755 YI-ADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKD---GQ-IYVADSYNHKIK 828 (1057)
T ss_pred EE-EECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee-EeCC---Cc-EEEEECCCCEEE
Confidence 66 455578999999987653211100 00000000000 0011234555 8877 54 778888899999
Q ss_pred EEEccCCCCceeeccc--------------cccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 235 VWDIRNPGIPLTAMKV--------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
+||..+ +... .+.+ .-....+|+++++|+++++-+.++.|++||+++++.
T Consensus 829 viD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 829 KLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999986 4332 2221 123578999999999999999999999999999875
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=1.1e-08 Score=75.69 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=126.1
Q ss_pred ccceeEEEEcC---CCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecC---C-cceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 18 RASVTDVCFHQ---TKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSA---A-HGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 18 ~~~v~~l~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
++.+..+.|.. +|. .++-+-.+|.|.++..........+++-.. . ....++.|++ .+..++++..+|.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSIS 146 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEE
Confidence 34566666664 444 456667788888887654443333332211 0 1145778888 778899999999998
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (291)
+-+.....+.. ..+.+.+...... ..|+...++++. +|+
T Consensus 147 ~v~~t~~~le~--vq~wk~He~E~Wt--------------------------------------a~f~~~~pnlvy-tGg 185 (339)
T KOG0280|consen 147 GVYETEMVLEK--VQTWKVHEFEAWT--------------------------------------AKFSDKEPNLVY-TGG 185 (339)
T ss_pred EEecceeeeee--cccccccceeeee--------------------------------------eecccCCCceEE-ecC
Confidence 65554443322 2233333332221 235555556655 788
Q ss_pred CcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 170 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
.|+.+..||+|..+ .+.. +...+..-+.++. -+|. .+. +|++|+.|-.|++||.|+.++|+..-
T Consensus 186 DD~~l~~~D~R~p~~~i~~-----------n~kvH~~GV~SI~-ss~~--~~~-~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWH-----------NSKVHTSGVVSIY-SSPP--KPT-YIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred CCceEEEEEecCCcceeee-----------cceeeecceEEEe-cCCC--CCc-eEEEeccccceeeeehhcccCccccC
Confidence 89999999999433 2222 2222344566665 5554 244 99999999999999999888888765
Q ss_pred cccccceeEEEeecCC--CeeEEecCCCeEEEEEcCC
Q 022870 249 KVHLEPVLCLSIDESC--NGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~--~~l~s~s~dg~i~vw~~~~ 283 (291)
.. .+.|+.+.++|.- ++|+++=..| .+|-+.+.
T Consensus 251 ~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 251 KV-GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred cc-ccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 54 4789999997742 2333333333 44444443
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=9.9e-09 Score=84.97 Aligned_cols=178 Identities=12% Similarity=0.079 Sum_probs=106.7
Q ss_pred eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (291)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.|.++|.+.++. ..+..+. .++.+..|+| ||+.|+..+.+ ..|.+||+.+++... +........
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~--~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~g~~~------ 246 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSR--EPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFEGLNG------ 246 (430)
T ss_pred EEEEECCCCCCc-eEEecCC--CceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCCCCcC------
Confidence 577888765443 4444444 4489999999 99988766543 368899998765321 111110000
Q ss_pred cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcC--eEEEEeCCCcceeeEecccccCC
Q 022870 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGG 195 (291)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~~wd~~~~~~~~~~~~~~~~~ 195 (291)
..+|+|+|+.++++. +.++ .|++||+.+++.. .+.
T Consensus 247 -----------------------------------~~~~SpDG~~la~~~-~~~g~~~Iy~~d~~~~~~~-~lt------ 283 (430)
T PRK00178 247 -----------------------------------APAWSPDGSKLAFVL-SKDGNPEIYVMDLASRQLS-RVT------ 283 (430)
T ss_pred -----------------------------------CeEECCCCCEEEEEE-ccCCCceEEEEECCCCCeE-Ecc------
Confidence 045999998876543 2233 6888899887643 333
Q ss_pred CCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
.+. ....... |+|+ |+.++++...+| .|+++|+.+ ++. ..+...........|+|+++.|+..+.+
T Consensus 284 --~~~----~~~~~~~-~spD---g~~i~f~s~~~g~~~iy~~d~~~-g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 284 --NHP----AIDTEPF-WGKD---GRTLYFTSDRGGKPQIYKVNVNG-GRA-ERVTFVGNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred --cCC----CCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCE-EEeecCCCCccceEECCCCCEEEEEEcc
Confidence 121 1223344 9998 442444444444 577778776 443 2222222333457899999999776643
Q ss_pred -C--eEEEEEcCCCce
Q 022870 274 -Q--KIVLYNLDHSTV 286 (291)
Q Consensus 274 -g--~i~vw~~~~~~~ 286 (291)
+ .|.+||+.+++.
T Consensus 352 ~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 352 DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCceEEEEEECCCCCE
Confidence 3 588899988754
No 264
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=5.2e-11 Score=100.00 Aligned_cols=216 Identities=16% Similarity=0.235 Sum_probs=141.2
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC--
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-- 86 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-- 86 (291)
++.++++.|+...+|++|+.+.+.|+.|+..|.|+++++.+|.......+|..+ |+-+.-+. +|..+++.+.-.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa--vT~vePs~--dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA--VTLVEPSV--DGSTQLTSSSSSSP 1167 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc--cccccccC--CcceeeeeccccCc
Confidence 456788899999999999999999999999999999999999999999999955 99998888 888777655433
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-------cccCCC
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-------DDVPAE 159 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 159 (291)
-..+|++...-. +.-++... ....|+-. .........+....+|+++........+.+... ..|+|+
T Consensus 1168 lsaLW~~~s~~~---~~Hsf~ed--~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1168 LSALWDASSTGG---PRHSFDED--KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred hHHHhccccccC---cccccccc--ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 478999875211 11111111 11112111 111222333455677888877765553333211 789999
Q ss_pred CCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 160 ~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
...++ .|| .+||.+..+.++.|. .+.....+ .|+|.+ . .++.-+ .|||++
T Consensus 1242 D~LIl-----ndG--vLWDvR~~~aIh~FD--------~ft~~~~G------~FHP~g---~-eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1242 DTLIL-----NDG--VLWDVRIPEAIHRFD--------QFTDYGGG------GFHPSG---N-EVIINS-----EIWDMR 1291 (1516)
T ss_pred cceEe-----eCc--eeeeeccHHHHhhhh--------hheecccc------cccCCC---c-eEEeec-----hhhhhH
Confidence 86444 355 479999988888776 23222222 399984 3 555554 399999
Q ss_pred CCCCceeeccccccceeEEEeecCCCee
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGG 267 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l 267 (291)
+ .+.++....-. =..+.|+..|..+
T Consensus 1292 T-F~lLh~VP~Ld--qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1292 T-FKLLHSVPSLD--QCAVTFNSTGDVM 1316 (1516)
T ss_pred H-HHHHhcCcccc--ceEEEeccCccch
Confidence 8 66665554322 2355666666544
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=3.4e-10 Score=93.36 Aligned_cols=209 Identities=18% Similarity=0.266 Sum_probs=136.8
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
.+++.++..+|.|+-+|.++.-| +.+-|+... ...+-+ .|..+-.|-.+.|+|.....+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 56788999999999999998877 556676653 333322 243333477888888434345444444444557988754
Q ss_pred CCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEE
Q 022870 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~ 176 (291)
.... ..+-++.+..... ++.|+|+.+.+++ +++.|-.+..
T Consensus 102 s~~a-Ief~lhghsrait--------------------------------------d~n~~~q~pdVla-tcsvdt~vh~ 141 (1081)
T KOG0309|consen 102 SSNA-IEFVLHGHSRAIT--------------------------------------DINFNPQHPDVLA-TCSVDTYVHA 141 (1081)
T ss_pred Cccc-eEEEEecCcccee--------------------------------------ccccCCCCCccee-ecccccccee
Confidence 3211 0111111111000 0558898888777 6777999999
Q ss_pred EeCCCcceee-EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce
Q 022870 177 WDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (291)
Q Consensus 177 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v 255 (291)
||+++..... .+.. - ......++ |+-..+ .+.+.+....|++||++.++.++..+++|...|
T Consensus 142 wd~rSp~~p~ys~~~-------w-----~s~asqVk-wnyk~p----~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 142 WDMRSPHRPFYSTSS-------W-----RSAASQVK-WNYKDP----NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred eeccCCCcceeeeec-------c-----cccCceee-ecccCc----chhhhccCCceEEEeccCCCcceEEecccceee
Confidence 9999875433 2221 1 12233444 765422 466666777899999999889999999999999
Q ss_pred eEEEeec-CCCeeEEecCCCeEEEEEcCCCc
Q 022870 256 LCLSIDE-SCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 256 ~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
+++.|.. ....+.+++.||+|++||.+...
T Consensus 205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 9999943 33357899999999999987643
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1e-06 Score=67.31 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=151.1
Q ss_pred CCccceeEEEEcCCCCEEEEecC---CCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeEE
Q 022870 16 GHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVK 89 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~ 89 (291)
.+.+..+-|+|+|+.+.|+++-. +|.|..|.++. |++...-+......+-..+++++ ++++++++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence 35667889999999999988755 47787777664 54432211111113347899999 9889888765 57899
Q ss_pred EEECCCCCCCCCCccccc-cce----------EEEEEeecccCccceeccCCCCceeeecccCccccc---cC-CCCCC-
Q 022870 90 CWDIENGGLSSNPSLTIK-TNS----------YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT---DS-LCDSK- 153 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~- 153 (291)
++-++....+..++.... ... .+...+.+........-........+++..+..... .+ ++...
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 999976433332211111 111 233334444333333333344555566664432211 11 11111
Q ss_pred -cccCCCCCcEEEEecCCcCeEEEEeCCCc-ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CC
Q 022870 154 -DDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-ED 230 (291)
Q Consensus 154 -~~~~~~~~~~~~~~g~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~d 230 (291)
+.|+|+++...+ ....+++|.+|..... ..+..++.....+. .+.. ....-++. .+|+ |+ +|.++. ..
T Consensus 195 Hi~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~-dF~g--~~~~aaIh-is~d---Gr-FLYasNRg~ 265 (346)
T COG2706 195 HIVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTIDTLPE-DFTG--TNWAAAIH-ISPD---GR-FLYASNRGH 265 (346)
T ss_pred eEEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeeccCcc-ccCC--CCceeEEE-ECCC---CC-EEEEecCCC
Confidence 999999986655 5778999999998874 22222221100000 2222 33455665 8888 66 666654 34
Q ss_pred CcEEEEEccCCCCceeecc---ccccceeEEEeecCCCeeEEecCC-CeEEEEEcCC
Q 022870 231 GSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGAD-QKIVLYNLDH 283 (291)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~d-g~i~vw~~~~ 283 (291)
..|.+|.+...+..+..+. .+........+++.+++|+++..| ..|.+|.++.
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 5788888876444333322 334457889999999999988875 4688887764
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.12 E-value=1.7e-10 Score=60.56 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=36.0
Q ss_pred CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=4.2e-09 Score=86.93 Aligned_cols=244 Identities=15% Similarity=0.100 Sum_probs=148.6
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
-++|+||++.|.-+.|+.+.+.|-|...+|.|.+|-+.+++-...+......+-|.+++|+. +|..+.....||.|.+
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEE
Confidence 46899999999999999999999999999999999998886554444333335699999999 9999999999999988
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccc-------------ccc----CCCC--
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV-------------DTD----SLCD-- 151 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~~~-- 151 (291)
=.++.++.-.+ .++......+.++....... .....+....++.+..... ... +.++
T Consensus 142 GsvdGNRIwgK---eLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 142 GSVDGNRIWGK---ELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred Eeeccceecch---hcchheccceeecccHHHHH-hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 77765543221 11111111121221111111 1111122222222211100 000 0000
Q ss_pred --CC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870 152 --SK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (291)
Q Consensus 152 --~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (291)
.. .-.-|+.+.+. .+..+|.+.+-.-.+......+.. .-.+.... |+|++. +|+.++
T Consensus 218 ~~g~~~~v~pdrP~la--vcy~nGr~QiMR~eND~~Pvv~dt-------------gm~~vgak-Wnh~G~----vLAvcG 277 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLA--VCYANGRMQIMRSENDPEPVVVDT-------------GMKIVGAK-WNHNGA----VLAVCG 277 (1189)
T ss_pred ccCccccCCCCCCEEE--EEEcCceehhhhhcCCCCCeEEec-------------ccEeecce-ecCCCc----EEEEcc
Confidence 00 11235655544 344567777665444333333321 22455666 999844 888776
Q ss_pred CC---------CcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 229 ED---------GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 229 ~d---------g~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.+ +.|.+|..- +..+..++.....|++++|-..|..++.+ .|+.|.+=+++.
T Consensus 278 ~~~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 278 NDSDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred CcccccCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 53 367777765 78888999888999999998888877765 477777665553
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=6.7e-09 Score=83.14 Aligned_cols=242 Identities=14% Similarity=0.112 Sum_probs=135.3
Q ss_pred ceeEEEEcCCCCEEEEecC-----------CCeEEEEeCCCCeEEEEEeeecCCcceEE-EEEeecCCCCeEEEEeCCCe
Q 022870 20 SVTDVCFHQTKPILFAGTT-----------GGELRIWDTVQHRTVSSSWVHSAAHGIVS-VATGPSIGLNKVISQGRDGT 87 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~ 87 (291)
.|.-+.|||..+||+|=+. ...++|||+.+|...+.+.....+..++. ..||. |+.+++--.. .+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ce
Confidence 4888999999999998653 25799999999999988877443333443 46888 8788876555 46
Q ss_pred EEEEECCCCCCCCCCcccccc--------ce-----------------------------------EEEEEeecccCccc
Q 022870 88 VKCWDIENGGLSSNPSLTIKT--------NS-----------------------------------YHFCKLSLVKEPYA 124 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~--------~~-----------------------------------~~~~~~~~~~~~~~ 124 (291)
|.||+.....+.....+.+.. .. ...|.+....+...
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 888876543322110000000 00 00000000000000
Q ss_pred ee-----------ccCCCCceeeecccCccccccCCCCCC---cccCCCCCcEEEEecCC-cCeEEEEeCCCc-c---ee
Q 022870 125 NA-----------KQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEGPKYMAVAGEQ-LSEVEIWDLNTA-E---RC 185 (291)
Q Consensus 125 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~-d~~i~~wd~~~~-~---~~ 185 (291)
.. ...-....++.++..........-... .+|.|.|+.+.+.+|.. ..++.+|-+++. . .+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 00 000000111112221111111111111 67889999887776653 345888887742 1 22
Q ss_pred eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEccCCCCceee-ccccccceeEEEee
Q 022870 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSID 261 (291)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~~~~~ 261 (291)
..+. ...+..+. |+|. |+ +++.+ +..|.+.++|+.. ...... ...| -.-+.+.|+
T Consensus 488 k~~d--------------k~~~N~vf-wsPk---G~-fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh-~~at~veWD 546 (698)
T KOG2314|consen 488 KELD--------------KKFANTVF-WSPK---GR-FVVVAALVSRRGDLEFYDTDY-ADLKDTASPEH-FAATEVEWD 546 (698)
T ss_pred hhhc--------------ccccceEE-EcCC---Cc-EEEEEEecccccceEEEecch-hhhhhccCccc-cccccceEC
Confidence 2222 23456666 9998 66 55554 4579999999874 222211 2223 345789999
Q ss_pred cCCCeeEEecC------CCeEEEEEcCCCc
Q 022870 262 ESCNGGISGGA------DQKIVLYNLDHST 285 (291)
Q Consensus 262 ~~~~~l~s~s~------dg~i~vw~~~~~~ 285 (291)
|.|+|+++++. |.--++|+++..-
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 99999999886 5557888887653
No 270
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.3e-08 Score=75.63 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred eEEecCCccceeEEEEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
...+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++.++..+ .++++++|... +.+.++.|-..|.|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDld-e~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLD-ERHVIYAGLQNGMVL 261 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccC-CcceeEEeccCceEE
Confidence 445677889999999999655 7888999999999999999999888877 44999999974 357889999999999
Q ss_pred EEECCCCC
Q 022870 90 CWDIENGG 97 (291)
Q Consensus 90 iwd~~~~~ 97 (291)
+||++..+
T Consensus 262 vyD~R~~~ 269 (463)
T KOG1645|consen 262 VYDMRQPE 269 (463)
T ss_pred EEEccCCC
Confidence 99998765
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=8.1e-08 Score=78.97 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=103.5
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe--E-EEEeCCC--eEEEEECCCCCCCCCCccccccceEEEE
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK--V-ISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
..|.+.|...++. ..+.... ..+.+-+|+| ||+. + ++...+| .|.+.++.+++... +.........
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~--~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~-- 235 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH--SLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLM-- 235 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC--CCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccc--
Confidence 4677778764443 3343333 3377889999 9874 2 2444443 57777887765322 1111111100
Q ss_pred EeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---CCcCeEEEEeCCCcc--eeeEec
Q 022870 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---EQLSEVEIWDLNTAE--RCTRLH 189 (291)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~~wd~~~~~--~~~~~~ 189 (291)
.+|+|||+.++++.. ..+-.+.+|++..+. ....+.
T Consensus 236 ---------------------------------------p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 236 ---------------------------------------PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred ---------------------------------------eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee
Confidence 449999988776431 223344557776531 222222
Q ss_pred ccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE--EccCCCCceeeccccccceeEEEeecCCCee
Q 022870 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--DIRNPGIPLTAMKVHLEPVLCLSIDESCNGG 267 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw--d~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 267 (291)
. .. .+...... |+|+ |+.++++...+|...+| ++...+.....+..+...+....|+|+|+.|
T Consensus 277 ~-------~~----~~~~~~p~-wSPD---G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 277 N-------EA----FGTQGNPS-FSPD---GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred c-------CC----CCCcCCeE-ECCC---CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 1 11 11222344 9998 55234444456655555 4432133344455555667889999999988
Q ss_pred EEecCC---CeEEEEEcCCCcee
Q 022870 268 ISGGAD---QKIVLYNLDHSTVS 287 (291)
Q Consensus 268 ~s~s~d---g~i~vw~~~~~~~~ 287 (291)
+..+.+ ..|.+||+.+++..
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeE
Confidence 866543 47999999888654
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=2.3e-07 Score=75.87 Aligned_cols=197 Identities=6% Similarity=-0.027 Sum_probs=116.6
Q ss_pred ceeEEEEcCCCCE-EEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCC--CeEEEEE
Q 022870 20 SVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRD--GTVKCWD 92 (291)
Q Consensus 20 ~v~~l~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d--g~i~iwd 92 (291)
.+..-.|+|||+. ++..+. +..|.++|+.+++...... .. .......|+| ||+.++ +.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~--g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ--GMLVVSDVSK--DGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC--CcEEeeEECC--CCCEEEEEEccCCCcEEEEEE
Confidence 5678999999984 554333 4579999998876654433 23 2366788999 988766 44433 4677778
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc-
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL- 171 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d- 171 (291)
+.+++... +..... .... ..|+|||+.+++++...+
T Consensus 264 l~~g~~~~--LT~~~~--~d~~---------------------------------------p~~SPDG~~I~F~Sdr~g~ 300 (419)
T PRK04043 264 TNTKTLTQ--ITNYPG--IDVN---------------------------------------GNFVEDDKRIVFVSDRLGY 300 (419)
T ss_pred CCCCcEEE--cccCCC--ccCc---------------------------------------cEECCCCCEEEEEECCCCC
Confidence 77664321 111110 0000 349999998887653322
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC--------CcEEEEEccCCCC
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--------GSILVWDIRNPGI 243 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--------g~i~vwd~~~~~~ 243 (291)
..|.+.|+.+++..+.... +. . ... |+|+ |+.++++...+ ..|.+.|+.+ +.
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~-------g~----~----~~~-~SPD---G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFH-------GK----N----NSS-VSTY---KNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred ceEEEEECCCCCeEeCccC-------CC----c----Cce-ECCC---CCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 2588888887765332221 11 1 123 9998 55344444432 3788889876 43
Q ss_pred ceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCce
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTV 286 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~~ 286 (291)
...+... .......|+|||+.|+-.+.+ ..+.+.+++....
T Consensus 361 -~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~ 404 (419)
T PRK04043 361 -IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKS 404 (419)
T ss_pred -eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCee
Confidence 3444432 233458899999987655433 2466777766543
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=7.4e-08 Score=78.40 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=119.1
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 109 (291)
+..++.++.||.+..+|..+|+.+....... .+.+.-.. .+..++.++.+|.|..||.++++...+. .....
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~--~~~~~ 176 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS---EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTY--SRVTP 176 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc---eeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEE--ccCCC
Confidence 4466677777888888877777766544321 12221111 2357777888999999999988765421 11110
Q ss_pred eEEEE-Eeecc-cCccceeccCCCCceeeecccCcccccc-CC---CCCC------cccCC--CCCcEEEEecCCcCeEE
Q 022870 110 SYHFC-KLSLV-KEPYANAKQANEPKDCYEREVGETVDTD-SL---CDSK------DDVPA--EGPKYMAVAGEQLSEVE 175 (291)
Q Consensus 110 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~------~~~~~--~~~~~~~~~g~~d~~i~ 175 (291)
..... ..++. ...........+....++...++..-.. .. +... ..-+| .+..+++ ++.+|.++
T Consensus 177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~--~~~~g~l~ 254 (377)
T TIGR03300 177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA--VSYQGRVA 254 (377)
T ss_pred ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE--EEcCCEEE
Confidence 00000 00000 0001111111222333333333221110 00 0000 00111 2344443 34579999
Q ss_pred EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc-ccc
Q 022870 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEP 254 (291)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h-~~~ 254 (291)
.||.++++.+..... . .. .... .. +. .+++++.+|.|+.+|..+ ++.+...... ...
T Consensus 255 a~d~~tG~~~W~~~~-------~------~~-~~p~-~~-----~~-~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~ 312 (377)
T TIGR03300 255 ALDLRSGRVLWKRDA-------S------SY-QGPA-VD-----DN-RLYVTDADGVVVALDRRS-GSELWKNDELKYRQ 312 (377)
T ss_pred EEECCCCcEEEeecc-------C------Cc-cCce-Ee-----CC-EEEEECCCCeEEEEECCC-CcEEEccccccCCc
Confidence 999999987665541 0 00 0111 21 22 678888999999999988 7766555321 122
Q ss_pred eeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 255 v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
..+.... +..|++++.+|.|+++|.++++++..
T Consensus 313 ~ssp~i~--g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 313 LTAPAVV--GGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred cccCEEE--CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 2232333 34788899999999999999988744
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=8.8e-09 Score=85.11 Aligned_cols=243 Identities=9% Similarity=0.026 Sum_probs=145.6
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe---------------EEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---------------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
.....|++|+....++|.|+.||.+++-.+.+.. .-.++++|... |.-+.|+. ....|-+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s--V~vvTWNe--~~QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS--VMVVTWNE--NNQKLTTS 89 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce--EEEEEecc--cccccccc
Confidence 4567899999988899999999999999876521 12356788855 99999999 77888899
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC--cccCCCC
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEG 160 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (291)
..+|.|.+|-+-.+....+.+..-+........+...+.....+.. .+...+-.++..+.....+.+... +.|++|.
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe-DGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE-DGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-cCCEEEEeeccceecchhcchheccceeecccH
Confidence 9999999999987765442222222223333334333333222221 222222233333333333333222 7899998
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEeccccc------CCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC------GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
+.++ .+-.+|.+.+||....- ..++...+. ....+|. ..+..+.-..+-|..++.. .|+.+..+|.+.
T Consensus 169 ~~~L--f~~ange~hlydnqgnF-~~Kl~~~c~Vn~tg~~s~~~~k--ia~i~w~~g~~~~v~pdrP-~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 169 EQAL--FKKANGETHLYDNQGNF-ERKLEKDCEVNGTGIFSNFPTK--IAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQ 242 (1189)
T ss_pred HHHH--hhhcCCcEEEecccccH-HHhhhhceEEeeeeeecCCCcc--ccceeeccCccccCCCCCC-EEEEEEcCceeh
Confidence 8776 45567999999986431 111111110 0111111 1111110000122222222 899999999999
Q ss_pred EEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
+.--.+...|+..-.+ -.+.++.|+++|.+|+.++.|
T Consensus 243 iMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence 9876654555544333 578899999999999998875
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.03 E-value=8.7e-08 Score=76.12 Aligned_cols=244 Identities=12% Similarity=0.013 Sum_probs=148.8
Q ss_pred cceeEEEEcCCCCEEEEecCC---------------CeEEEEeCCCCeEEEEEeeecCCcceE-EEEEeecCCCCeEEEE
Q 022870 19 ASVTDVCFHQTKPILFAGTTG---------------GELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQ 82 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~d---------------g~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~ 82 (291)
..|..+.|+|.+++|.|-+.. ..+.+||..++..+..+.....+.-.+ -+.|+- +..+++-.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~--~D~y~ARv 149 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI--DDKYVARV 149 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee--cchhhhhh
Confidence 458999999999999986543 359999999999999887765432244 677887 65666644
Q ss_pred eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCcccee------ccCCCCceeeecccCccccc-cCCCCCC--
Q 022870 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA------KQANEPKDCYEREVGETVDT-DSLCDSK-- 153 (291)
Q Consensus 83 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 153 (291)
. ...+.++++ +......+...++........+++.......+ ....+...++.+.....+.. .+..-+.
T Consensus 150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3 347999998 55444333334443333333333332111110 11223344444443332222 2222222
Q ss_pred cccCCCCCcEEEEecC---------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870 154 DDVPAEGPKYMAVAGE---------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~---------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l 224 (291)
+.|++.|.++++-+-. ....++|++++...+..... ..+.+.... |.|.+. +.-+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~-------------~~~pVhdf~-W~p~S~--~F~v 291 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD-------------LKDPVHDFT-WEPLSS--RFAV 291 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc-------------ccccceeee-ecccCC--ceeE
Confidence 7788888877653211 12457788877443332221 356778887 999853 3256
Q ss_pred EeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCCCce
Q 022870 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTV 286 (291)
Q Consensus 225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~~~~ 286 (291)
++|...-.+.++|++. .....+ ....=+.+.|+|.+++++.++-| |.+-+||......
T Consensus 292 i~g~~pa~~s~~~lr~--Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 292 ISGYMPASVSVFDLRG--NLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred Eecccccceeeccccc--ceEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 6778999999999994 433333 34555778889999998887766 6788888776544
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=7.3e-09 Score=75.25 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=117.7
Q ss_pred CCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE-EEEeeecCCcceEEEEEeecCCCCeEEEEeC-
Q 022870 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGR- 84 (291)
Q Consensus 7 ~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~- 84 (291)
...+.+.+.-|+++-.+-+.+-.++.++++..||.+.+.+.+.-..+ +.+.... ..-.+.++.. .++.+.++..
T Consensus 78 ~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~--~~~as~~~~~--~~~~i~s~~~g 153 (319)
T KOG4714|consen 78 GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIH--SGSASRKICR--HGNSILSGGCG 153 (319)
T ss_pred CcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccc--ccccccceee--cccEEecCCcc
Confidence 33456666666665555555556778999999999999997651111 1111111 0122333333 4445444332
Q ss_pred ----CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCC
Q 022870 85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (291)
Q Consensus 85 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (291)
-+..+.|+++..+........+.. ..+ ++-+|..
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~---v~~---------------------------------------l~~hp~q 191 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKALDA---VTA---------------------------------------LCSHPAQ 191 (319)
T ss_pred eEeeccceeeeccccccccccccccccc---chh---------------------------------------hhCCccc
Confidence 123445555433221100000000 000 5567777
Q ss_pred CcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
.++++ +|+.||.+-+||++....+..+-. .| +..++.+. |+|..+ . .|+++++||.+..||..+
T Consensus 192 q~~v~-cgt~dg~~~l~d~rn~~~p~S~l~-------ah----k~~i~eV~-FHpk~p--~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVC-CGTDDGIVGLWDARNVAMPVSLLK-------AH----KAEIWEVH-FHPKNP--E-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEE-EecCCCeEEEEEcccccchHHHHH-------Hh----hhhhhhee-ccCCCc--h-heeEecCCCcEEEEcCCC
Confidence 77665 788899999999998754443332 44 44566666 999854 3 799999999999999873
Q ss_pred CCCceeec---ccc----------------------ccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 241 PGIPLTAM---KVH----------------------LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 241 ~~~~~~~~---~~h----------------------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
.++..- ..| ...|++ |+--|..|++|+.-+.|++++
T Consensus 256 --~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 256 --TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred --ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 221100 000 112222 344556889999888888864
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=97.30 Aligned_cols=190 Identities=12% Similarity=0.179 Sum_probs=123.9
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceE
Q 022870 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111 (291)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 111 (291)
.+.....++...-|..+-+... ++.+- ..|.++.-+| ...+.+||+.||.+++|....+..+. .......
T Consensus 2182 ~~~~~n~~~~~~tq~~~~~~~~--~k~~v--~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~~~~v~----~~rt~g~ 2251 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVM--IKHPV--ENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGHGQQVV----CFRTAGN 2251 (2439)
T ss_pred cCCcccCCccccceecccceeE--eeccc--CceeeecCCC--CCceEEecCCCceEEEEeccCCCeEE----EeeccCc
Confidence 3444444555555654433222 22222 3488888888 66889999999999999988765422 1111110
Q ss_pred EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEeccc
Q 022870 112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~ 191 (291)
.. . +...|+.+|+.+-+ +..||.+.+|.+. .++....+
T Consensus 2252 -s~-v-----------------------------------tr~~f~~qGnk~~i--~d~dg~l~l~q~~-pk~~~s~q-- 2289 (2439)
T KOG1064|consen 2252 -SR-V-----------------------------------TRSRFNHQGNKFGI--VDGDGDLSLWQAS-PKPYTSWQ-- 2289 (2439)
T ss_pred -ch-h-----------------------------------hhhhhcccCCceee--eccCCceeecccC-Ccceeccc--
Confidence 00 0 00458888876654 4458999999987 44544444
Q ss_pred ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec---CCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE
Q 022870 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI 268 (291)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 268 (291)
.|...... .. |-.. .+++++ .++.+.+||..-+...-..-..|.+.++++++-|+.+.|+
T Consensus 2290 ------chnk~~~D----f~-Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2290 ------CHNKALSD----FR-FIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred ------cCCccccc----ee-eeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEE
Confidence 44332222 22 4432 455553 5789999997643433333378999999999999999999
Q ss_pred EecCCCeEEEEEcCCCceeeee
Q 022870 269 SGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 269 s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+||.+|.|++||++..+++|++
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHh
Confidence 9999999999999999887753
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.02 E-value=4e-08 Score=71.85 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=117.5
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceE
Q 022870 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111 (291)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 111 (291)
.+..++.|.++++.+++-+.....+ |...-.+.++++++ ++.++++.+....|..|.+.........+........
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~ 205 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH 205 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee--eccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence 3555677777777777654433322 32212378999999 9999999999999999998865432110111111111
Q ss_pred EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEeccc
Q 022870 112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~ 191 (291)
..+ ..|+.... .+| .+..||++.|||++..........
T Consensus 206 gF~---------------------------------------~S~s~~~~-~FA-v~~Qdg~~~I~DVR~~~tpm~~~s- 243 (344)
T KOG4532|consen 206 GFY---------------------------------------NSFSENDL-QFA-VVFQDGTCAIYDVRNMATPMAEIS- 243 (344)
T ss_pred cee---------------------------------------eeeccCcc-eEE-EEecCCcEEEEEecccccchhhhc-
Confidence 111 33555443 333 678899999999998765444332
Q ss_pred ccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec-------ccccc-ceeEEEeecC
Q 022870 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-------KVHLE-PVLCLSIDES 263 (291)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~h~~-~v~~~~~~~~ 263 (291)
.....+++.+..+. |+|.+... +|+..-.-+.+.+.|+++ .+-.+.+ ..|.. .|.+-.|+.+
T Consensus 244 ------strp~hnGa~R~c~-Fsl~g~lD--LLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 244 ------STRPHHNGAFRVCR-FSLYGLLD--LLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred ------ccCCCCCCceEEEE-ecCCCcce--EEEEecCcceEEEEEccc-CceeeEEecCccccccccccccccccccCC
Confidence 11122466666666 99875533 455555567899999998 5433322 22333 3888888766
Q ss_pred CCeeEEecCCCeEEEEEcCCC
Q 022870 264 CNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 264 ~~~l~s~s~dg~i~vw~~~~~ 284 (291)
+.-+.+.+++ .+.-|++.+.
T Consensus 314 n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 314 NESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred Ccccccccch-hhheeecccc
Confidence 6655555544 4566666553
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.4e-07 Score=76.08 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=110.4
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 108 (291)
+-..++-|...|.|.+|++..++....+....+.++|.++.++. +-..|.+++.|+.+..|+.......+ ..+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~----~~~~ 142 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIR----IWKE 142 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeee----eecc
Confidence 33477888999999999999999988888655557799999988 77899999999999999998876533 1111
Q ss_pred ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~ 188 (291)
...... .++.+||+..++ +++ +.|++||+++++.+..|
T Consensus 143 ~~~~~~--------------------------------------sl~is~D~~~l~--~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 143 QKPLVS--------------------------------------SLCISPDGKILL--TAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred CCCccc--------------------------------------eEEEcCCCCEEE--ecc--ceEEEEEccCceEEEEe
Confidence 111000 055889987655 455 78999999999999999
Q ss_pred cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
+ ||..+.+...+... +. +..|.++|.+...+..|.+|-++.
T Consensus 181 t--------gh~s~v~t~~f~~~-~~--g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 T--------GHGSPVRTLSFTTL-ID--GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--------CCCcceEEEEEEEe-cc--ccccceeeeccccccceeEEEEEc
Confidence 9 88665444322221 22 223665666666777888888764
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.01 E-value=1.6e-07 Score=74.70 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=142.9
Q ss_pred ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC-------
Q 022870 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG------- 86 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------- 86 (291)
+..-.-++...+|||.|.+|++.... .|.+|+-.....+..+. | ..|..+.|+| .+.+|.+=+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~---~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H---PDVKYLDFSP--NEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred ccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c---CCceecccCc--ccceeeeeccCCccChhhc
Confidence 33356789999999999999987765 48999987766555554 3 2299999999 889999866543
Q ss_pred --------eEEEEECCCCCCCCCCccccccce--E-EEEEeecccCccceeccCCCCceeeecccCcccccc---CC--C
Q 022870 87 --------TVKCWDIENGGLSSNPSLTIKTNS--Y-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SL--C 150 (291)
Q Consensus 87 --------~i~iwd~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 150 (291)
.+.+||+.++..+. .+.....+ . ....++... ...+-..+.+..++.+ ..+..... +. +
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~--sf~~~~q~~~~Wp~~k~s~~D--~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~g 175 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVF--SFNGISQPYLGWPVLKFSIDD--KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVG 175 (561)
T ss_pred cCCccccCceeEEeccCceeEe--eccccCCcccccceeeeeecc--hhhhhhccCeEEEEec-CCccccCchhhccccc
Confidence 48999999887644 11111111 1 122222222 2223334555555554 22211111 11 1
Q ss_pred CCCcccCCCCCcEE-EE----ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870 151 DSKDDVPAEGPKYM-AV----AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (291)
Q Consensus 151 ~~~~~~~~~~~~~~-~~----~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (291)
-...+++|.++.-. +. .+..++.+++|.+..+..+.+... ....-..+. |++. |. +|+
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l------------fk~~~~qLk-W~~~---g~-~ll 238 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL------------FKVSGVQLK-WQVL---GK-YLL 238 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee------------EeecccEEE-EecC---Cc-eEE
Confidence 11166777643322 11 234578899999987665544331 122233444 7776 33 332
Q ss_pred ee-----------cCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec--CCCeEEEEEcCCC
Q 022870 226 AG-----------YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHS 284 (291)
Q Consensus 226 ~g-----------~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~dg~i~vw~~~~~ 284 (291)
+- .....+++++++. +-+.....-.++|...+|.|.++.+++.+ .+-.+.++|++..
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EEEEEeeecccceeccceEEEEeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 21 1235788999884 33333335578999999988888776554 6778888888776
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.01 E-value=2.9e-06 Score=64.80 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=121.3
Q ss_pred EEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEe-ecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870 23 DVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-PSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (291)
Q Consensus 23 ~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 100 (291)
+..|.+ ++.++++--..+.|..|+..+++... +... . ...+++. + + ..|+.+...+ +.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~---~-~~G~~~~~~--~-g~l~v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP---G-PNGMAFDRP--D-GRLYVADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS---S-EEEEEEECT--T-SEEEEEETTC-EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC---C-CceEEEEcc--C-CEEEEEEcCc-eEEEecCCCcEEE
Confidence 567887 78788888889999999988775533 3222 1 5677787 5 5 6666666654 5566888764321
Q ss_pred CCccccc----cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc-----
Q 022870 101 NPSLTIK----TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL----- 171 (291)
Q Consensus 101 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----- 171 (291)
..... ....... +++.|+|+.++...+...
T Consensus 75 --~~~~~~~~~~~~~~ND---------------------------------------~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 75 --LADLPDGGVPFNRPND---------------------------------------VAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp --EEEEETTCSCTEEEEE---------------------------------------EEE-TTS-EEEEEECCBCTTCGG
T ss_pred --EeeccCCCcccCCCce---------------------------------------EEEcCCCCEEEEecCCCcccccc
Confidence 11110 0000000 568888874432222111
Q ss_pred -CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC------c
Q 022870 172 -SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------P 244 (291)
Q Consensus 172 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~------~ 244 (291)
|.+..++.. ++....... -.....++ |+|+ ++.++++-+..+.|..+++...+. .
T Consensus 114 ~g~v~~~~~~-~~~~~~~~~-------------~~~pNGi~-~s~d---g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVADG-------------LGFPNGIA-FSPD---GKTLYVADSFNGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp SEEEEEEETT-SEEEEEEEE-------------ESSEEEEE-EETT---SSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred ccceEEECCC-CeEEEEecC-------------cccccceE-ECCc---chheeecccccceeEEEeccccccceeeeee
Confidence 568888887 443333321 22345565 9998 543556778889999999975333 1
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
...+....+..-.++++.+|++.++.-..+.|.+++.+ ++++..+
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 12222222347899999999988887788999999988 7776553
No 282
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.8e-09 Score=81.40 Aligned_cols=212 Identities=13% Similarity=0.062 Sum_probs=144.1
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC--C-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-CCeEEEEE
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--H-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-DGTVKCWD 92 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd 92 (291)
|++.|+-+.... .+++.+++.||.++.|--.. + +.+..+..|.. .|.+++.+- ++.++.|++. |..++++|
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~--~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG--VILSLAVSY--DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHH--HHHhhhccc--cceeEeeccCcccceeEEE
Confidence 888888776654 34899999999999998432 1 33444556664 488999888 8888899887 99999999
Q ss_pred CCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCC-CCcEEEEecCCc
Q 022870 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE-GPKYMAVAGEQL 171 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d 171 (291)
++.-.... ...+...+...+.+ .++. -..+++++...+
T Consensus 83 vEn~Dmin--miKL~~lPg~a~wv---------------------------------------~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 83 VENFDMIN--MIKLVDLPGFAEWV---------------------------------------TSKGDKISLIAVSLFKS 121 (558)
T ss_pred eeccchhh--hcccccCCCceEEe---------------------------------------cCCCCeeeeEEeecccC
Confidence 98765432 11222222221110 1111 123566666678
Q ss_pred CeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC-----Cce
Q 022870 172 SEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-----IPL 245 (291)
Q Consensus 172 ~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-----~~~ 245 (291)
+.+.++|-....+ ...+.. -| ..++..+. ++|.+ . .+++....|.|.-|...... +..
T Consensus 122 g~i~VvD~~~d~~q~~~fkk-------lH----~sPV~~i~-y~qa~---D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~ 185 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKK-------LH----FSPVKKIR-YNQAG---D-SAVSIDISGMVEYWSAEGPFQFPRTNLN 185 (558)
T ss_pred CCcEEECCcCCcCccceecc-------cc----cCceEEEE-eeccc---c-ceeeccccceeEeecCCCcccCcccccc
Confidence 9999999876543 222221 22 44566666 88873 3 78888899999999987211 111
Q ss_pred ---------eeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 246 ---------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 246 ---------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
..+........++.|+|++..+.+-+.|..|+++.+.++++++.+
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 112223457889999999999999999999999999999988653
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.97 E-value=5.2e-07 Score=80.50 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=135.6
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEE----eCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIW----DTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iw----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
..+.|.++.|-++...++.+..+|.|.+. +..+... ..+-.-. .+|.+++|+| |+.+|+.+..+++|.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd--~GI~a~~WSP--D~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVD--SGILAASWSP--DEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEc--CcEEEEEECC--CcCEEEEEeCCCEEEEEe
Confidence 35679999999998889999999999999 5444322 2222222 4599999999 999999999899988875
Q ss_pred CCCCCCCCCCccccccceEE-EEEeecccCccceeccCCCCce----eeecccCccccccCC--CCCC-cccCCCCCcEE
Q 022870 93 IENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKD----CYEREVGETVDTDSL--CDSK-DDVPAEGPKYM 164 (291)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~ 164 (291)
-. ...+.+ ..+...... ...+++.+........+..... ..+......-...+. .... ++|-.||.++.
T Consensus 149 ~~-fd~i~E--~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 149 RD-FDPISE--VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred cc-ceEEEE--eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 32 221110 011111000 0111111111111100000000 000000000011111 1111 88999998766
Q ss_pred EEec--CC--cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---CCcEEEEE
Q 022870 165 AVAG--EQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DGSILVWD 237 (291)
Q Consensus 165 ~~~g--~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg~i~vwd 237 (291)
+.+- .. -+.+|+|+-+ |+...+-+ +..+.-.+++ |.|.+ . +||+... ...|.+|.
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE------------~v~gLe~~l~-WrPsG---~-lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSE------------PVDGLEGALS-WRPSG---N-LIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccc------------cCCCccCCcc-CCCCC---C-EEEEEEEcCCCcEEEEEe
Confidence 5443 22 2679999876 54332222 2344455565 99984 3 6776643 35677777
Q ss_pred ccCCCCceeecc----ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 238 IRNPGIPLTAMK----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 238 ~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
.+ |-....|. .....|..|+|++++..||..-.|. |.+|-..+..-
T Consensus 288 rN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 288 RN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred cC--CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 44 43333322 3456899999999999999877665 99998887653
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.97 E-value=1.8e-06 Score=68.15 Aligned_cols=208 Identities=9% Similarity=0.007 Sum_probs=115.1
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC----------CCeEEEEECCCCCCCCCCccccccc
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----------DGTVKCWDIENGGLSSNPSLTIKTN 109 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 109 (291)
++|.+.|..+++.+.++.....+ ..+ ++| |++.|+.+.. +..|.+||..+.+...+. .+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P---~~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i--~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP---NPV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI--ELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC---cee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE--ccCCC
Confidence 89999999999999988876543 234 899 9888876554 789999999998765421 11111
Q ss_pred eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEec
Q 022870 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~ 189 (291)
+......... .++++|+|+.++++--+-+..|.+.|+.+++.+.++.
T Consensus 99 p~~~~~~~~~---------------------------------~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 99 PRFLVGTYPW---------------------------------MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred chhhccCccc---------------------------------eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 0000000000 0456777766655322336677777777766555443
Q ss_pred ccccC--------CCCCCCCC-----------cceeeeeEEEecC------CCC-----CCceEEEeecCCCcEEEEEcc
Q 022870 190 QNSCG--------GSPNFSSK-----------GRGMCMAVQAYLP------SKS-----QGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 190 ~~~~~--------~~~~~~~~-----------~~~~~~~~~~~~p------~~~-----~g~~~l~~g~~dg~i~vwd~~ 239 (291)
...+. .+..|... ..........|.+ ..+ +|+ ++.+..+ |.|++.|+.
T Consensus 146 vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 146 VPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLS 223 (352)
T ss_pred CCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc-EEEEecC-CeEEEEecC
Confidence 21000 00000000 0000111111222 111 355 5656555 999999965
Q ss_pred CC----CCceeeccc-------cccceeEEEeecCCCeeEEec----------CCCeEEEEEcCCCceeeee
Q 022870 240 NP----GIPLTAMKV-------HLEPVLCLSIDESCNGGISGG----------ADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 240 ~~----~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s----------~dg~i~vw~~~~~~~~~~~ 290 (291)
.. ..+...+.. ..+.+.-++++++++.+.... ..+.|.++|..+++.+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i 295 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI 295 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence 31 222222211 122334499999988887642 1258999999999988765
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=2.8e-07 Score=70.01 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=114.6
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCC-Cccccc
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN-PSLTIK 107 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~ 107 (291)
++..+++++.++.|..||..+|+.+........ +...... .+..++.+..++.|..+|..+++...+ ......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---ccceeee---cccccccccceeeeEecccCCcceeeeecccccc
Confidence 455787888999999999999999888776322 2211222 346777777888999999999876441 000000
Q ss_pred cceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeE
Q 022870 108 TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~ 187 (291)
...... .......+..+++ +..++.|..+|+++++.+..
T Consensus 109 ~~~~~~---------------------------------------~~~~~~~~~~~~~--~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 109 PAGVRS---------------------------------------SSSPAVDGDRLYV--GTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TCSTB-----------------------------------------SEEEEETTEEEE--EETCSEEEEEETTTTEEEEE
T ss_pred cccccc---------------------------------------ccCceEecCEEEE--EeccCcEEEEecCCCcEEEE
Confidence 000000 0112223455553 33369999999999999887
Q ss_pred ecccccCCCCCCCCCcce-------eeeeEEEecCCCCCCceEEEeecCCCc-EEEEEccCCCCceeeccccccceeEEE
Q 022870 188 LHQNSCGGSPNFSSKGRG-------MCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPLTAMKVHLEPVLCLS 259 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~~g~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~h~~~v~~~~ 259 (291)
... ....... ....+. +. + + .++.++.++. +.+ |+.+ ++.+.... ...+..+
T Consensus 148 ~~~--------~~~~~~~~~~~~~~~~~~~~-~~-~---~--~v~~~~~~g~~~~~-d~~t-g~~~w~~~--~~~~~~~- 207 (238)
T PF13360_consen 148 YPV--------GEPRGSSPISSFSDINGSPV-IS-D---G--RVYVSSGDGRVVAV-DLAT-GEKLWSKP--ISGIYSL- 207 (238)
T ss_dssp EES--------STT-SS--EEEETTEEEEEE-CC-T---T--EEEEECCTSSEEEE-ETTT-TEEEEEEC--SS-ECEC-
T ss_pred eec--------CCCCCCcceeeecccccceE-EE-C---C--EEEEEcCCCeEEEE-ECCC-CCEEEEec--CCCccCC-
Confidence 763 1111111 111221 22 1 3 5666666775 555 9998 66444322 2223331
Q ss_pred eecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 260 IDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
...++..|+.++.++.|..||+++++.+
T Consensus 208 ~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 208 PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 3455567777779999999999999875
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=2.5e-06 Score=67.71 Aligned_cols=113 Identities=18% Similarity=0.152 Sum_probs=87.2
Q ss_pred ccCCCCCcEEEEecCCcC-eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 155 DVPAEGPKYMAVAGEQLS-EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
.+..+++.++ .|..|| .+-+||.++++..+... .-+.+.++. .+|+ |+ +++++.....|
T Consensus 366 r~~~~~e~~v--igt~dgD~l~iyd~~~~e~kr~e~-------------~lg~I~av~-vs~d---GK-~~vvaNdr~el 425 (668)
T COG4946 366 RIQVDPEGDV--IGTNDGDKLGIYDKDGGEVKRIEK-------------DLGNIEAVK-VSPD---GK-KVVVANDRFEL 425 (668)
T ss_pred EEccCCcceE--EeccCCceEEEEecCCceEEEeeC-------------CccceEEEE-EcCC---Cc-EEEEEcCceEE
Confidence 3444555444 466677 89999999887554443 245678887 8988 55 89999999999
Q ss_pred EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCC----eEEEEEcCCCceee
Q 022870 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTVSH 288 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg----~i~vw~~~~~~~~~ 288 (291)
.+.|+.+ +.....-+...+-|+.+.|+|+++++|-+=-+| .|+++|+.+++...
T Consensus 426 ~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 426 WVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 9999998 666555555678999999999999998776654 69999999988764
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=3.9e-08 Score=75.67 Aligned_cols=160 Identities=11% Similarity=0.139 Sum_probs=96.2
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCe----EEEEEeeecCCcceEEEEEeecCCCCeEEE---EeCCCeEEEEEC
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVIS---QGRDGTVKCWDI 93 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s---~~~dg~i~iwd~ 93 (291)
......++.++++|.+..+....++++.... ++........ -+++.|.. +...... ++....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~---~~ai~~~~--~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR---PTAISFIR--EDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC---cceeeeee--ccceEEEEeecCCceeeeeecc
Confidence 3445567788899988888887777765433 2222222222 34455544 3333333 334445555554
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 173 (291)
..+... ..+-....... ++++||++.++ ++..|..
T Consensus 140 ~~~~~~----~~lGhvSml~d---------------------------------------VavS~D~~~Ii--taDRDEk 174 (390)
T KOG3914|consen 140 DSGRCE----PILGHVSMLLD---------------------------------------VAVSPDDQFII--TADRDEK 174 (390)
T ss_pred cccCcc----hhhhhhhhhhe---------------------------------------eeecCCCCEEE--EecCCce
Confidence 432221 11111111111 77999997666 7889999
Q ss_pred EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
|++-....-..+..+-. || +..+..++ .-++ + .|++|+.|++|++||+++ ++.+..+
T Consensus 175 IRvs~ypa~f~Iesfcl-------GH----~eFVS~is-l~~~----~-~LlS~sGD~tlr~Wd~~s-gk~L~t~ 231 (390)
T KOG3914|consen 175 IRVSRYPATFVIESFCL-------GH----KEFVSTIS-LTDN----Y-LLLSGSGDKTLRLWDITS-GKLLDTC 231 (390)
T ss_pred EEEEecCcccchhhhcc-------cc----Hhheeeee-eccC----c-eeeecCCCCcEEEEeccc-CCccccc
Confidence 99988776666666654 66 44666665 5543 2 689999999999999998 6654443
No 288
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=9.5e-07 Score=70.86 Aligned_cols=229 Identities=10% Similarity=0.092 Sum_probs=129.3
Q ss_pred EEEecCC----CeEEEEeC--CCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC----CCeEEEEECCCC--CCCC
Q 022870 33 LFAGTTG----GELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR----DGTVKCWDIENG--GLSS 100 (291)
Q Consensus 33 l~s~~~d----g~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~~~ 100 (291)
++.|+.. +.|.+|++ ++++....-... .......++++| ++++|+++.+ ++.|..|++... ++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 4455555 68988887 445433221111 113367889999 8899998876 579999998865 2211
Q ss_pred CCccccc--cceEEEEEeecccCccceeccCCCCceeeecccCcccccc----------------CCCCCC-cccCCCCC
Q 022870 101 NPSLTIK--TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD----------------SLCDSK-DDVPAEGP 161 (291)
Q Consensus 101 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~~~ 161 (291)
+.... ........+.........+...++....+.+.....+... ...|.. +.++|+++
T Consensus 79 --~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 79 --LNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp --EEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred --eeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 11222 1222233334444444555566777777777653211110 111211 89999999
Q ss_pred cEEEEecCCcCeEEEEeCCCcc--ee--eEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE
Q 022870 162 KYMAVAGEQLSEVEIWDLNTAE--RC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (291)
Q Consensus 162 ~~~~~~g~~d~~i~~wd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd 237 (291)
+++++--. ...|.+|++.... .. ..+.. +...-..-+. |+|+ ++...++.-.++.|.+++
T Consensus 157 ~v~v~dlG-~D~v~~~~~~~~~~~l~~~~~~~~-----------~~G~GPRh~~-f~pd---g~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 157 FVYVPDLG-ADRVYVYDIDDDTGKLTPVDSIKV-----------PPGSGPRHLA-FSPD---GKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp EEEEEETT-TTEEEEEEE-TTS-TEEEEEEEEC-----------STTSSEEEEE-E-TT---SSEEEEEETTTTEEEEEE
T ss_pred EEEEEecC-CCEEEEEEEeCCCceEEEeecccc-----------ccCCCCcEEE-EcCC---cCEEEEecCCCCcEEEEe
Confidence 88775444 4589999997655 21 12221 1122233444 9998 553556667788999999
Q ss_pred ccCC-CCc--eeeccc----c--ccceeEEEeecCCCeeEEec-CCCeEEEEEcC
Q 022870 238 IRNP-GIP--LTAMKV----H--LEPVLCLSIDESCNGGISGG-ADQKIVLYNLD 282 (291)
Q Consensus 238 ~~~~-~~~--~~~~~~----h--~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~ 282 (291)
+... +.. +..+.. . ......|+++|+|++|..+. .++.|.+|+++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 9831 221 111111 1 12578899999999886554 57889999994
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4e-09 Score=79.59 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=82.7
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (291)
+.|...++.++ .|..+|.|..+|++.+. +...+- +...+++++ .-.. +++ +|++.+
T Consensus 258 lQf~~s~nLv~--~GcRngeI~~iDLR~rnqG~~~~a~rly-------------h~Ssvtslq-~Lq~--s~q-~LmaS~ 318 (425)
T KOG2695|consen 258 LQFAGSDNLVF--NGCRNGEIFVIDLRCRNQGNGWCAQRLY-------------HDSSVTSLQ-ILQF--SQQ-KLMASD 318 (425)
T ss_pred HHhcccCCeeE--ecccCCcEEEEEeeecccCCCcceEEEE-------------cCcchhhhh-hhcc--ccc-eEeecc
Confidence 45666555333 79999999999998752 233332 233444444 2221 134 899999
Q ss_pred CCCcEEEEEccCCCCc---eeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 229 EDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 229 ~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.+|+|.+||++- .++ +.++.+|...-.-+-+ ++....+++++.|...|||.++++.++.++
T Consensus 319 M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 319 MTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred CcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 999999999986 555 7888888654433333 677778899999999999999999988764
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.93 E-value=8.2e-07 Score=65.88 Aligned_cols=73 Identities=8% Similarity=0.101 Sum_probs=50.4
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec-----CCcceEEEEEeecCC----CCeEEEEeCCCeEEEE
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-----AAHGIVSVATGPSIG----LNKVISQGRDGTVKCW 91 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iw 91 (291)
=+.++||||+.+||.+...|+|+++|+.. ..+..+.... -...|-.+.|.+... ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 46799999999999999999999999864 4343433211 113477777765311 1257777788888887
Q ss_pred ECC
Q 022870 92 DIE 94 (291)
Q Consensus 92 d~~ 94 (291)
-+.
T Consensus 125 ~vs 127 (282)
T PF15492_consen 125 LVS 127 (282)
T ss_pred EEE
Confidence 764
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=1e-06 Score=64.71 Aligned_cols=205 Identities=10% Similarity=0.077 Sum_probs=123.9
Q ss_pred EEEEcC-----CCCEEEEecCCCeEEEEeCCCCeEEEE-EeeecCCcceEEEE-EeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 23 DVCFHQ-----TKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVA-TGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 23 ~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
.+.|-| ...+||.|+.-|...+|...+.+.... ...+... |+-+. +.. ....+..++.|.++++.+++.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~--v~~~~r~cd--~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNND--VTLVKRYCD--LKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccc--hhhhhhhcc--cccceeeccCCcceeEEEEec
Confidence 456665 334899999999999999886544332 2223211 22111 111 124567788999999999886
Q ss_pred CCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (291)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 175 (291)
+.... ..+..... ..+ ++++++++. +++.|. ...|.
T Consensus 148 ~s~~~----~~h~~~~~--~ns------------------------------------~~~snd~~~-~~~Vgd-s~~Vf 183 (344)
T KOG4532|consen 148 DSNKF----AVHNQNLT--QNS------------------------------------LHYSNDPSW-GSSVGD-SRRVF 183 (344)
T ss_pred Ccccc----eeeccccc--eee------------------------------------eEEcCCCce-EEEecC-CCcce
Confidence 54322 11111100 000 447888864 444555 57799
Q ss_pred EEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec----cc
Q 022870 176 IWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KV 250 (291)
Q Consensus 176 ~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~ 250 (291)
.|.+.... .+..... .. ....+.+ .. |+.... .+|++.+||.+.|||++..+.++... ..
T Consensus 184 ~y~id~~sey~~~~~~-------a~-t~D~gF~--~S-~s~~~~----~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYE-------AP-TSDHGFY--NS-FSENDL----QFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred EEEeCCccceeeeeEe-------cc-cCCCcee--ee-eccCcc----eEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 99886432 2222111 11 1112333 33 776532 89999999999999999877766543 35
Q ss_pred cccceeEEEeecCCC--eeEEecCCCeEEEEEcCCCceeeee
Q 022870 251 HLEPVLCLSIDESCN--GGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 251 h~~~v~~~~~~~~~~--~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
|.+.+..+.|++-|. +|.-.-.-+.+.+-|+++++-.+.+
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 789999999986443 3444445678999999998766554
No 292
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=1e-07 Score=80.93 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=126.6
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 108 (291)
++..++.|+-...+..+|+.+.+..+....... .|+-+..+ ++.+.+|...|+|.+-|.++.+.+. ++..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~~ih----t~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--GVTIMRYN----NRNLFCGDTRGTVFLRDPNSFETIH----TFDA 215 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC--ceEEEEec----CcEEEeecccceEEeecCCcCceee----eeec
Confidence 344677777777888899988887776655443 36666654 3899999999999999999876544 4444
Q ss_pred ceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC--------cCeEEEEeCC
Q 022870 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ--------LSEVEIWDLN 180 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------d~~i~~wd~~ 180 (291)
+...... |+-.|+ +++++|.. |..|++||+|
T Consensus 216 Hs~siSD----------------------------------------fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 216 HSGSISD----------------------------------------FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred cccceee----------------------------------------eeccCC-eEEEeecccccccccccchhhhhhhh
Confidence 4333322 444453 34444432 6779999999
Q ss_pred CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc---eeeccccccceeE
Q 022870 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLC 257 (291)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~ 257 (291)
..+.+..+.. +..+ .-+ .|.|.-. . .+++++..|...+-|..+...+ +..+......+.+
T Consensus 255 mmral~PI~~--------~~~P-----~fl-rf~Psl~--t-~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~ 317 (1118)
T KOG1275|consen 255 MMRALSPIQF--------PYGP-----QFL-RFHPSLT--T-RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA 317 (1118)
T ss_pred hhhccCCccc--------ccCc-----hhh-hhccccc--c-eEEEEecccceeeccccccCCCccceeEEccCCCccee
Confidence 8877665542 1111 112 3888743 2 7899999999999994433333 3333344455899
Q ss_pred EEeecCCCeeEEecCCCeEEEEE
Q 022870 258 LSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 258 ~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+.+++++..++-|..+|.|.+|.
T Consensus 318 fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 318 FDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEecCCCceEEEecccCcEeeec
Confidence 99999999999999999999997
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=2.3e-06 Score=67.91 Aligned_cols=143 Identities=17% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCccceeEEEEcCCCCEEEEecCCC-eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++..+ +...- ..|.++..++ +|.+++.+-....|.+.|++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~l--g~I~av~vs~--dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDL--GNIEAVKVSP--DGKKVVVANDRFELWVIDID 431 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCc--cceEEEEEcC--CCcEEEEEcCceEEEEEEec
Confidence 6888899999998888999999999 89999988776544 44444 4499999999 99999999988999999999
Q ss_pred CCCCCCCCccccccceEE--EEEeecccCcccee---ccCCCCceeeecccCccccccCCCCCC--cccCCCCCcEEEEe
Q 022870 95 NGGLSSNPSLTIKTNSYH--FCKLSLVKEPYANA---KQANEPKDCYEREVGETVDTDSLCDSK--DDVPAEGPKYMAVA 167 (291)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 167 (291)
++.... .-++.... ...+++.......+ ........++++...+......+.... -+|.|+++++...+
T Consensus 432 ngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 432 NGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 986532 11221111 12222222222221 222345666777776655444333333 88999999886544
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=6.2e-06 Score=75.14 Aligned_cols=230 Identities=11% Similarity=0.041 Sum_probs=128.9
Q ss_pred eEEEEcC-CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC------------CcceEEEEEeecCCCCeEEEEe-CCCe
Q 022870 22 TDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------------AHGIVSVATGPSIGLNKVISQG-RDGT 87 (291)
Q Consensus 22 ~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~~-~dg~ 87 (291)
..+++++ ++.++++-..++.|++||.. ++.+..+..... -..-..+++.+ +++.|+.+. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--CCCEEEEEeCCCce
Confidence 4678887 46677777888999999975 554443332100 01247889998 777666554 4578
Q ss_pred EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCC-CcccCCCCCcEEEE
Q 022870 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS-KDDVPAEGPKYMAV 166 (291)
Q Consensus 88 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 166 (291)
|+.+|..++... ++....... .. .............+. .++++|++..+++
T Consensus 648 Ir~id~~~~~V~-----tlag~G~~g--~~--------------------~~gg~~~~~~~ln~P~gVa~dp~~g~LyV- 699 (1057)
T PLN02919 648 LREIDFVNETVR-----TLAGNGTKG--SD--------------------YQGGKKGTSQVLNSPWDVCFEPVNEKVYI- 699 (1057)
T ss_pred EEEEecCCCEEE-----EEeccCccc--CC--------------------CCCChhhhHhhcCCCeEEEEecCCCeEEE-
Confidence 999998765321 111000000 00 000000000000111 1778996666665
Q ss_pred ecCCcCeEEEEeCCCcceeeEeccc-ccCCCCCCCC--CcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQN-SCGGSPNFSS--KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
+...++.|++||..++... .+... ......++.. ..-.....++ |+|+ |..++++-+.++.|++||+.+...
T Consensus 700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIa-vspd---G~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGIS-LSPD---LKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEE-EeCC---CCEEEEEECCCCeEEEEECCCCcE
Confidence 4555789999999877543 22110 0000001000 0112345565 8887 443566677789999999986321
Q ss_pred cee------------ecccc--------ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 244 PLT------------AMKVH--------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 244 ~~~------------~~~~h--------~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
.+. .+..+ -....+++++++|.++++-+.++.|++||.+++.+.
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 110 01000 113468999999998899999999999999887654
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2.4e-07 Score=77.51 Aligned_cols=212 Identities=11% Similarity=0.106 Sum_probs=129.3
Q ss_pred CCceEEecCCccceeEEEEcCCC------------CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC
Q 022870 8 PDPVAVLRGHRASVTDVCFHQTK------------PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG 75 (291)
Q Consensus 8 ~~~~~~l~~h~~~v~~l~~~~~~------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 75 (291)
-+.+++++-|...|+.+.|.|.. -+||++...|.|.+||...+..+..+..+. +++..++|.+..+
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN--DSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC--cchhheeeeeccC
Confidence 35677888999999999998721 267888889999999999888777777666 5599999988544
Q ss_pred C--CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCC---------------CCceeeec
Q 022870 76 L--NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN---------------EPKDCYER 138 (291)
Q Consensus 76 ~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 138 (291)
. ..|++-....+|-+||..+++..++. ...........+.+...........+ ..+..+.+
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~--~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI 200 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKY--DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI 200 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeecc--ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence 3 35666677789999999999876521 11111111111111111111111111 11111211
Q ss_pred ccC--c-------cccccCCCCCC-----------cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCC
Q 022870 139 EVG--E-------TVDTDSLCDSK-----------DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN 198 (291)
Q Consensus 139 ~~~--~-------~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 198 (291)
... . ........... ++|+|.-++.++++- ...+.++|++-..++.....+
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~--prellv~dle~~~~l~vvpie------- 271 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF--PRELLVFDLEYECCLAVVPIE------- 271 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--ccceEEEcchhhceeEEEEec-------
Confidence 111 0 00000000000 778898887776553 578999999988888776631
Q ss_pred CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 199 ~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
++..--+. +-|+.. .. .|++...||.+.+|-.+.
T Consensus 272 -----r~~akfv~-vlP~~~-rd-~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 272 -----RGGAKFVD-VLPDPR-RD-ALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -----cCCcceeE-eccCCC-cc-eEEEEecCCeEEEEEeec
Confidence 22222233 777743 22 899999999999997664
No 296
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=5.5e-08 Score=73.61 Aligned_cols=179 Identities=13% Similarity=0.172 Sum_probs=107.2
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCe-E--EEEEeeecC---CcceEEEEEeecCCCCeEEEEeCCCeEE
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-T--VSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVK 89 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~--~~~~~~~~~---~~~v~~~~~~~~~~~~~l~s~~~dg~i~ 89 (291)
+|+--|+++.++.|...++++ .|=.|.+|+++-.. . +..++.+.- ..-|++..|+|... +.++-.+..|+|+
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIr 239 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIR 239 (433)
T ss_pred cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEE
Confidence 688999999999999888876 56789999987432 2 122222211 12488999999533 6777777789999
Q ss_pred EEECCCCCCCCCC--ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEe
Q 022870 90 CWDIENGGLSSNP--SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (291)
Q Consensus 90 iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (291)
+-|++...+.-.. ++.....+....-++ .....-.++.|+..|++++ +
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffs----------------------------eiIsSISDvKFs~sGryil--s 289 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFS----------------------------EIISSISDVKFSHSGRYIL--S 289 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHH----------------------------HHhhhhhceEEccCCcEEE--E
Confidence 9999954332110 111111111110000 0000001166999998877 4
Q ss_pred cCCcCeEEEEeCC-CcceeeEecccccCCCCCCCCCc--------ce---eeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870 168 GEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKG--------RG---MCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (291)
Q Consensus 168 g~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (291)
-+. -+|++||+. ..+++.+++ -|.... .. .-..++ |+-++ . ++++|+.....++
T Consensus 290 RDy-ltvk~wD~nme~~pv~t~~--------vh~~lr~kLc~lYEnD~IfdKFec~-~sg~~---~-~v~TGsy~n~frv 355 (433)
T KOG1354|consen 290 RDY-LTVKLWDLNMEAKPVETYP--------VHEYLRSKLCSLYENDAIFDKFECS-WSGND---S-YVMTGSYNNVFRV 355 (433)
T ss_pred ecc-ceeEEEeccccCCcceEEe--------ehHhHHHHHHHHhhccchhheeEEE-EcCCc---c-eEecccccceEEE
Confidence 432 789999994 455666655 222110 01 112333 77663 3 8999999999999
Q ss_pred EEccC
Q 022870 236 WDIRN 240 (291)
Q Consensus 236 wd~~~ 240 (291)
+++..
T Consensus 356 f~~~~ 360 (433)
T KOG1354|consen 356 FNLAR 360 (433)
T ss_pred ecCCC
Confidence 99654
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.3e-08 Score=81.77 Aligned_cols=174 Identities=16% Similarity=0.171 Sum_probs=110.6
Q ss_pred EEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCc
Q 022870 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (291)
Q Consensus 54 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (291)
..+.+|... |..++-.. +.+-+++++.|++|++|.++...-.. ....|.+...
T Consensus 729 ~nf~GH~~~--iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~---------~tsaCQfTY~-------------- 781 (1034)
T KOG4190|consen 729 CNFTGHQEK--IRAIAAID--NENSFISASKDKTVKLWSIKPEGDEI---------GTSACQFTYQ-------------- 781 (1034)
T ss_pred ecccCcHHH--hHHHHhcc--cccceeeccCCceEEEEEeccccCcc---------ccceeeeEhh--------------
Confidence 345567644 77776666 66899999999999999997542111 0111111110
Q ss_pred eeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeee
Q 022870 134 DCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMA 209 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
.|.. +.|-.+.+++. + .||.|.+||.--++++.++... ......+.+.+
T Consensus 782 ----------------aHkk~i~~igfL~~lr~i~--S--cD~giHlWDPFigr~Laq~~da-------pk~~a~~~ikc 834 (1034)
T KOG4190|consen 782 ----------------AHKKPIHDIGFLADLRSIA--S--CDGGIHLWDPFIGRLLAQMEDA-------PKEGAGGNIKC 834 (1034)
T ss_pred ----------------hccCcccceeeeeccceee--e--ccCcceeecccccchhHhhhcC-------cccCCCceeEe
Confidence 0100 33444444332 2 2789999999888877766531 11112223332
Q ss_pred EEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeecc-----ccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 210 VQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 210 ~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
+. +-+ .. .+++| +...+|+++|.+. ..-...++ +..+.+.+++..+.|+.++.+-..|+|.+.|.++
T Consensus 835 l~--nv~---~~-iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 835 LE--NVD---RH-ILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred cc--cCc---ch-heeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 22 111 22 44444 7789999999998 55444444 3346688999999999999999999999999999
Q ss_pred Cceee
Q 022870 284 STVSH 288 (291)
Q Consensus 284 ~~~~~ 288 (291)
|+++.
T Consensus 908 G~vIN 912 (1034)
T KOG4190|consen 908 GKVIN 912 (1034)
T ss_pred Cceec
Confidence 99765
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=1.1e-05 Score=65.81 Aligned_cols=231 Identities=14% Similarity=0.076 Sum_probs=124.5
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccccc
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 108 (291)
.+..++.++.+|.|..+|..+|+.+...+..... ..... . ++..++.++.+|.|..+|.++++..++. ....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~--~~~p~--v--~~~~v~v~~~~g~l~ald~~tG~~~W~~--~~~~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL--SGGVG--A--DGGLVFVGTEKGEVIALDAEDGKELWRA--KLSS 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc--ccceE--E--cCCEEEEEcCCCEEEEEECCCCcEeeee--ccCc
Confidence 4558888999999999999999988776654321 11222 2 4578888999999999999988775521 1111
Q ss_pred ceEEEEEeecccCccceeccCCCCceeeecccCcccccc-CCCC-------CCcccCCCCCcEEEEecCCcCeEEEEeCC
Q 022870 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD-SLCD-------SKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~g~~d~~i~~wd~~ 180 (291)
. ....... ...........+....++...++..-.. .... ...... + ..++ .+..++.+..+|.+
T Consensus 136 ~--~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~--~~~~~g~v~ald~~ 208 (377)
T TIGR03300 136 E--VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVL--VGFAGGKLVALDLQ 208 (377)
T ss_pred e--eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEE--EECCCCEEEEEEcc
Confidence 1 0000000 0111111122233344444433322111 0000 001111 2 2333 45557999999999
Q ss_pred CcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe
Q 022870 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 260 (291)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 260 (291)
+++.+....... + .+... .. ....+. -+|.-. +. .+++++.+|.++.||.++ ++.+..... ........
T Consensus 209 tG~~~W~~~~~~--~-~g~~~-~~-~~~~~~-~~p~~~-~~-~vy~~~~~g~l~a~d~~t-G~~~W~~~~--~~~~~p~~ 277 (377)
T TIGR03300 209 TGQPLWEQRVAL--P-KGRTE-LE-RLVDVD-GDPVVD-GG-QVYAVSYQGRVAALDLRS-GRVLWKRDA--SSYQGPAV 277 (377)
T ss_pred CCCEeeeecccc--C-CCCCc-hh-hhhccC-CccEEE-CC-EEEEEEcCCEEEEEECCC-CcEEEeecc--CCccCceE
Confidence 998765543100 0 00000 00 000000 011101 22 677788899999999998 766655542 11222233
Q ss_pred ecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 261 DESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 261 ~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
. +..++.++.||.+..+|..+++.+
T Consensus 278 ~--~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 278 D--DNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred e--CCEEEEECCCCeEEEEECCCCcEE
Confidence 3 346777888999999999988765
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=3e-08 Score=75.03 Aligned_cols=131 Identities=15% Similarity=0.216 Sum_probs=88.8
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEE
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw 91 (291)
-++.|.++.|...+++++.|+.+|.|...|+..+ .+...+ -|... |+++..... ++.+|++.+.+|.|++|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ss--vtslq~Lq~-s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSS--VTSLQILQF-SQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcc--hhhhhhhcc-ccceEeeccCcCceeEe
Confidence 4577999999998899999999999999999754 333333 35544 888876653 44889999999999999
Q ss_pred ECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCc
Q 022870 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (291)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 171 (291)
|.+.-++.. .+.....+........ +-..+... .++ +++.|
T Consensus 327 D~R~~K~~~----~V~qYeGHvN~~a~l~---------------------------------~~v~~eeg-~I~-s~GdD 367 (425)
T KOG2695|consen 327 DLRATKCKK----SVMQYEGHVNLSAYLP---------------------------------AHVKEEEG-SIF-SVGDD 367 (425)
T ss_pred eehhhhccc----ceeeeecccccccccc---------------------------------cccccccc-eEE-EccCe
Confidence 999766522 1111111111000000 12344443 344 46669
Q ss_pred CeEEEEeCCCcceeeEecc
Q 022870 172 SEVEIWDLNTAERCTRLHQ 190 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~ 190 (291)
...++|.++.++.+.+++.
T Consensus 368 cytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eEEEEEecccCceeeccCC
Confidence 9999999999999888874
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.9e-06 Score=67.31 Aligned_cols=235 Identities=13% Similarity=0.184 Sum_probs=136.1
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-----------CCeEEE
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----------DGTVKC 90 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------dg~i~i 90 (291)
+-+.|||.|.||+|--.-| |.+|-=++-..++.+. |. .|.-+.||| ..++|+|=+. -..++|
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence 6689999999999987766 8899866555555553 43 389999999 8899998553 257999
Q ss_pred EECCCCCCCCCCcccc-ccceEEEEEeecccCccceeccCCCCceeeecccCcccccc---CCCCCCcccCCCCCcEEEE
Q 022870 91 WDIENGGLSSNPSLTI-KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTD---SLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 166 (291)
||+.++...+ .+.. .........+.........+-..+.++.++........... ..+-....|+|.+..+..-
T Consensus 287 WDI~tG~lkr--sF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 287 WDIATGLLKR--SFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEccccchhc--ceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence 9999998755 2221 22222223333333333334444455555544433322221 2222227788886433222
Q ss_pred ecCC---cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee----------cCCCcE
Q 022870 167 AGEQ---LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG----------YEDGSI 233 (291)
Q Consensus 167 ~g~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g----------~~dg~i 233 (291)
+-.. -..+.|-.+.+++.+++... | +..-..+. |-.+ |. +|+.- +.-..+
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nl--------f----nVsDckLh-WQk~---gd-yLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNL--------F----NVSDCKLH-WQKS---GD-YLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccc--------e----eeeccEEE-eccC---Cc-EEEEEEEeeccccccceEeeE
Confidence 2111 12355555555554444331 1 11111222 4433 43 55432 222356
Q ss_pred EEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCC---CeEEEEEcCC
Q 022870 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDH 283 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~ 283 (291)
.|+.++...-++..+.- ...|...+|.|.|..+++-+.. .++.+|.+++
T Consensus 428 eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 77777764556666553 6789999999999988765543 5788888873
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.4e-05 Score=61.30 Aligned_cols=229 Identities=9% Similarity=0.070 Sum_probs=125.7
Q ss_pred CCeEEEEeCCCCe-EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC---CeEEEEECCC--CCCCCCCccccccceEE
Q 022870 39 GGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD---GTVKCWDIEN--GGLSSNPSLTIKTNSYH 112 (291)
Q Consensus 39 dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~~ 112 (291)
+.-|.+|++.+.. .+..++.-......+-|+|+| +.+.|+++-.+ |.|.-|.++. +++...-.......+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 4569999987321 111111111113479999999 88888887654 6787777765 33321001111222212
Q ss_pred EEEeecccCccceeccCCCCceeeecccCccc---------------cccCCCCCC-cccCCCCCcEEEEecCCcCeEEE
Q 022870 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETV---------------DTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~ 176 (291)
...++........+....+...++.++....+ ..+-..|.. ..+.|++++++++.-..| .|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEE
Confidence 22222222233334444555555554332111 111112222 778999988887655544 6999
Q ss_pred EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccc-----
Q 022870 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH----- 251 (291)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h----- 251 (291)
|++..++....-+. +.. ...-..-+. |+|+ ++...++.--+++|.+|........+..++.+
T Consensus 172 y~~~dg~L~~~~~~--------~v~-~G~GPRHi~-FHpn---~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 172 YDLDDGKLTPADPA--------EVK-PGAGPRHIV-FHPN---GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred EEcccCcccccccc--------ccC-CCCCcceEE-EcCC---CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 99997765433221 111 111223343 9998 55333444568999999998743444444432
Q ss_pred ----ccceeEEEeecCCCeeEEecC-CCeEEEEEcCC
Q 022870 252 ----LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDH 283 (291)
Q Consensus 252 ----~~~v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~ 283 (291)
......|..+++|++|.++.. ...|-++.+..
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 235567778999999977653 34788887764
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=4.2e-06 Score=70.53 Aligned_cols=166 Identities=18% Similarity=0.202 Sum_probs=103.7
Q ss_pred EecCCccceeEEEEcCC-------------CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec---CCC
Q 022870 13 VLRGHRASVTDVCFHQT-------------KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGL 76 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~~-------------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~ 76 (291)
.|..|.+.|.-..+..+ |.+++||+.||+|.|-.+.+.+...++..+ .++.+++++|. +..
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~s 129 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQS 129 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---CcceeEEeccchhhhhh
Confidence 45667777776666555 999999999999999999888887777655 56999999992 124
Q ss_pred CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (291)
Q Consensus 77 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (291)
+++++|+.-| +.++.-+-.......+..-..++... .
T Consensus 130 k~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~------------------------------------------i 166 (846)
T KOG2066|consen 130 KQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHS------------------------------------------I 166 (846)
T ss_pred hheeecCcce-EEEehhhhhcCccceeeecCccceEE------------------------------------------E
Confidence 6899999988 77765432111110001111111111 2
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vw 236 (291)
+..| +++|-+ + |--|++||+.+.+.+..++.+. ...+.......+. |.++. .|+.|-.| +|+|.
T Consensus 167 ~W~g-~lIAWa-n-d~Gv~vyd~~~~~~l~~i~~p~------~~~R~e~fpphl~-W~~~~-----~LVIGW~d-~v~i~ 230 (846)
T KOG2066|consen 167 KWRG-NLIAWA-N-DDGVKVYDTPTRQRLTNIPPPS------QSVRPELFPPHLH-WQDED-----RLVIGWGD-SVKIC 230 (846)
T ss_pred EecC-cEEEEe-c-CCCcEEEeccccceeeccCCCC------CCCCcccCCCceE-ecCCC-----eEEEecCC-eEEEE
Confidence 2334 455543 3 3459999999998888777532 1111122233344 77652 57777655 68888
Q ss_pred EccC
Q 022870 237 DIRN 240 (291)
Q Consensus 237 d~~~ 240 (291)
.++.
T Consensus 231 ~I~~ 234 (846)
T KOG2066|consen 231 SIKK 234 (846)
T ss_pred EEec
Confidence 8873
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.5e-07 Score=70.00 Aligned_cols=229 Identities=13% Similarity=0.068 Sum_probs=141.2
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecC-CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDG 86 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg 86 (291)
+.+..++.|-..|.+++.+-++.++.|.+. |..++++|+++-..+..++...-+..+ ++..++...-..++ +.-.++
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCC
Confidence 345667789999999999999999999777 999999999887665444433322112 22223310001333 444678
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
.+.++|-....+.......++..+... +.+++.+...+
T Consensus 123 ~i~VvD~~~d~~q~~~fkklH~sPV~~----------------------------------------i~y~qa~Ds~v-- 160 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQDGYFKKLHFSPVKK----------------------------------------IRYNQAGDSAV-- 160 (558)
T ss_pred CcEEECCcCCcCccceecccccCceEE----------------------------------------EEeecccccee--
Confidence 999999876654321111222223222 22445555444
Q ss_pred ecCCcCeEEEEeCCC------cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 167 AGEQLSEVEIWDLNT------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
+....|.|.-|.... .+....++. .....+. ........++. |+|++. .+.+-+.|..|++++.++
T Consensus 161 SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~--eTdLy~f-~K~Kt~pts~E-fsp~g~----qistl~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 161 SIDISGMVEYWSAEGPFQFPRTNLNFELKH--ETDLYGF-PKAKTEPTSFE-FSPDGA----QISTLNPDRKVRGFVFKT 232 (558)
T ss_pred eccccceeEeecCCCcccCccccccccccc--cchhhcc-cccccCccceE-EccccC----cccccCcccEEEEEEecc
Confidence 666678899998763 111111110 0001111 11344566776 999844 788888999999999987
Q ss_pred CCCceeec--------------------------------ccccc-ceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 241 PGIPLTAM--------------------------------KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 241 ~~~~~~~~--------------------------------~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
++.++.+ ..|.. .-+.+.|+..+++|+-++-=| |+|.++.++++.
T Consensus 233 -GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 233 -GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred -chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 5543222 11222 346788999999999998776 999999999988
Q ss_pred eee
Q 022870 288 HCV 290 (291)
Q Consensus 288 ~~~ 290 (291)
+.+
T Consensus 311 ri~ 313 (558)
T KOG0882|consen 311 RIL 313 (558)
T ss_pred EEe
Confidence 754
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=4.5e-06 Score=70.20 Aligned_cols=254 Identities=13% Similarity=0.074 Sum_probs=150.4
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC----------CCCeEEEEeCCC
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI----------GLNKVISQGRDG 86 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~l~s~~~dg 86 (291)
|...-.++.|+|.| ++|-|+. ..|.+-|..+-+.+.+++.|... |+.+.|.|.. ..-+|+++...|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~--V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSA--VTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccc--eeEEEeccCCCchhccCccccceeEEeccccC
Confidence 44446789999998 7777765 47889999999999999999855 9999998721 112567888899
Q ss_pred eEEEEECCCCCCCCCCccccccceEEEEEeeccc--C-ccceeccCCCCceeeecccCccccccCCCCCC---cccCCCC
Q 022870 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK--E-PYANAKQANEPKDCYEREVGETVDTDSLCDSK---DDVPAEG 160 (291)
Q Consensus 87 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 160 (291)
.|.+||......+. -+..+..+.....+-+.. + ....++........|+...+...-..-.+|.. +.+.|..
T Consensus 90 rIil~d~~~~s~~~--~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 90 RIILVDFVLASVIN--WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred cEEEEEehhhhhhh--hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 99999998776543 112222222222221111 1 12233444455556666666555444445544 5567777
Q ss_pred CcEEEEecCCcCeEEEEeCCC-cc---e--eeEecccccCC-------C--CCCCC-C----cceeeeeEEEecCCCCCC
Q 022870 161 PKYMAVAGEQLSEVEIWDLNT-AE---R--CTRLHQNSCGG-------S--PNFSS-K----GRGMCMAVQAYLPSKSQG 220 (291)
Q Consensus 161 ~~~~~~~g~~d~~i~~wd~~~-~~---~--~~~~~~~~~~~-------~--~~~~~-~----~~~~~~~~~~~~p~~~~g 220 (291)
..-+.+.|+ .|.+.+-+.-. .+ + ...+..++... . ..+.. + ....+...+ |+|.-
T Consensus 168 ~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa-f~p~~--- 242 (1062)
T KOG1912|consen 168 SRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA-FSPHW--- 242 (1062)
T ss_pred cceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh-cChhh---
Confidence 666666676 46666665421 11 1 12222110000 0 00000 0 011123343 77762
Q ss_pred ceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe--ecCCCeeEEecCCCeEEEEEcCC
Q 022870 221 FVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
+ .++-......+.++|++- ..++....-..+.+.-+.| +|+...|.+.-.||.+.+|-...
T Consensus 243 r-n~lfi~~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 243 R-NILFITFPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred h-ceEEEEeccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 2 233334567899999997 6777776655555555666 66666899999999999997655
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.68 E-value=1.7e-05 Score=60.25 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEee
Q 022870 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (291)
Q Consensus 38 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
.+|+|..||..+|+.+.............+... + ++..+++++.++.|..||..+++...+ ........
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~l~~~d~~tG~~~W~--~~~~~~~~------ 69 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P--DGGRVYVASGDGNLYALDAKTGKVLWR--FDLPGPIS------ 69 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E--ETTEEEEEETTSEEEEEETTTSEEEEE--EECSSCGG------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-E--eCCEEEEEcCCCEEEEEECCCCCEEEE--eecccccc------
Confidence 378999999999999988865221111222223 2 347788888999999999998876441 11100000
Q ss_pred cccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCC
Q 022870 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (291)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 197 (291)
......+..+++.+ .++.++.+|..+++.+.....
T Consensus 70 ------------------------------------~~~~~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~------- 104 (238)
T PF13360_consen 70 ------------------------------------GAPVVDGGRVYVGT--SDGSLYALDAKTGKVLWSIYL------- 104 (238)
T ss_dssp ------------------------------------SGEEEETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-------
T ss_pred ------------------------------------ceeeeccccccccc--ceeeeEecccCCcceeeeecc-------
Confidence 00011233455433 467999999999998887421
Q ss_pred CCCCCcc-eeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccce-----------eEEEeecCCC
Q 022870 198 NFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV-----------LCLSIDESCN 265 (291)
Q Consensus 198 ~~~~~~~-~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~ 265 (291)
....... ....... +. +. .++++..++.|..+|+++ ++.+.......... ..+.+. ++
T Consensus 105 ~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 174 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPA-VD-----GD-RLYVGTSSGKLVALDPKT-GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG- 174 (238)
T ss_dssp -SSCTCSTB--SEEE-EE-----TT-EEEEEETCSEEEEEETTT-TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred ccccccccccccCce-Ee-----cC-EEEEEeccCcEEEEecCC-CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence 1111111 1111111 22 22 788888899999999999 88877766533221 222333 34
Q ss_pred eeEEecCCCe-EEEEEcCCCcee
Q 022870 266 GGISGGADQK-IVLYNLDHSTVS 287 (291)
Q Consensus 266 ~l~s~s~dg~-i~vw~~~~~~~~ 287 (291)
.+..++.++. +.+ |+.+++.+
T Consensus 175 ~v~~~~~~g~~~~~-d~~tg~~~ 196 (238)
T PF13360_consen 175 RVYVSSGDGRVVAV-DLATGEKL 196 (238)
T ss_dssp EEEEECCTSSEEEE-ETTTTEEE
T ss_pred EEEEEcCCCeEEEE-ECCCCCEE
Confidence 5666666775 555 99988743
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=1.2e-05 Score=70.94 Aligned_cols=243 Identities=10% Similarity=0.042 Sum_probs=131.1
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
.+.|.++.|..+.+.++.+..+|.|.+-|.++...... ..-. .+|.+++|+| |+..++.....++|.+-.-. ..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd--~GI~aaswS~--Dee~l~liT~~~tll~mT~~-f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVD--NGISAASWSP--DEELLALITGRQTLLFMTKD-FE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eecc--CceEEEeecC--CCcEEEEEeCCcEEEEEecc-cc
Confidence 36899999999998899999999999998876543322 1222 5599999999 98999888888887665432 11
Q ss_pred CCC-CCccccccceEEEE-EeecccCccceecc-CCCCceeeecccCccccc--cCCCCCC-cccCCCCCcEEEE--ecC
Q 022870 98 LSS-NPSLTIKTNSYHFC-KLSLVKEPYANAKQ-ANEPKDCYEREVGETVDT--DSLCDSK-DDVPAEGPKYMAV--AGE 169 (291)
Q Consensus 98 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~--~g~ 169 (291)
.+. +++ ........ .....+........ ..+...-........... ....|.. ++|-.||+++.+. +..
T Consensus 142 ~i~E~~L---~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 142 PIAEKPL---DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred chhcccc---ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 111 111 00000000 00000000000000 000000000000000000 1112222 8888999765431 112
Q ss_pred Cc-CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee---cCCCcEEEEEccCC--CC
Q 022870 170 QL-SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGSILVWDIRNP--GI 243 (291)
Q Consensus 170 ~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g---~~dg~i~vwd~~~~--~~ 243 (291)
.+ +.+++||-+ +.. .... .+..+.-.++. |.|.++ .+++- .+|+.|.+|..+-. +.
T Consensus 219 ~~~RkirV~drE-g~L-ns~s-----------e~~~~l~~~Ls-WkPsgs----~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GAL-NSTS-----------EPVEGLQHSLS-WKPSGS----LIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred CCceeEEEeccc-chh-hccc-----------Cccccccccee-ecCCCC----eEeeeeecCCCCcEEEEecCCccccc
Confidence 23 789999987 432 2211 11233444555 999743 56554 35668999986521 11
Q ss_pred ceeeccccccceeEEEeecCCCeeEE---ecCCCeEEEEEcCCCcee
Q 022870 244 PLTAMKVHLEPVLCLSIDESCNGGIS---GGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~l~s---~s~dg~i~vw~~~~~~~~ 287 (291)
....+.....+|..++|+.++..||. ......|++|-+.+....
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence 12223333445999999999988877 555556999988775543
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.65 E-value=1.5e-05 Score=65.44 Aligned_cols=226 Identities=11% Similarity=0.045 Sum_probs=119.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccc
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 109 (291)
+..++.++.+|.+..+|.++|+.+.+.+... .+.+--.. .+..++.+..++.|.-+|.++++...+........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG---EALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC---ceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 4467778889999999999999887766442 13221111 23577778889999999999998765221110000
Q ss_pred eEEEEEeecccC-ccceeccCCCCceeeecccCccccc-cCCC----CC-----CcccCC--CCCcEEEEecCCcCeEEE
Q 022870 110 SYHFCKLSLVKE-PYANAKQANEPKDCYEREVGETVDT-DSLC----DS-----KDDVPA--EGPKYMAVAGEQLSEVEI 176 (291)
Q Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~-----~~~~~~--~~~~~~~~~g~~d~~i~~ 176 (291)
.... ..++... .........+....++....+..-. .... .. .+..+| .+..+++ ++.+|.+..
T Consensus 194 ~~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~--~~~~g~l~a 270 (394)
T PRK11138 194 TLRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA--LAYNGNLVA 270 (394)
T ss_pred cccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE--EEcCCeEEE
Confidence 0000 0000000 0001111111122223222221111 0000 00 011122 2344553 334799999
Q ss_pred EeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc-cce
Q 022870 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPV 255 (291)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~-~~v 255 (291)
+|..+++.+.+... +. .. .+. .. +. .++.++.+|.+..+|..+ ++.+.....-. ...
T Consensus 271 ld~~tG~~~W~~~~-------~~---~~----~~~-~~-----~~-~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~ 328 (394)
T PRK11138 271 LDLRSGQIVWKREY-------GS---VN----DFA-VD-----GG-RIYLVDQNDRVYALDTRG-GVELWSQSDLLHRLL 328 (394)
T ss_pred EECCCCCEEEeecC-------CC---cc----CcE-EE-----CC-EEEEEcCCCeEEEEECCC-CcEEEcccccCCCcc
Confidence 99999987665442 10 01 111 22 22 677888999999999988 66554432111 112
Q ss_pred eEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
.+.... +.+|+.++.||.+...|.++++++-
T Consensus 329 ~sp~v~--~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 329 TAPVLY--NGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cCCEEE--CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 222222 3367888899999999999998764
No 308
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=2.8e-05 Score=63.88 Aligned_cols=177 Identities=10% Similarity=0.058 Sum_probs=100.1
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCe-EEEEeC---CCeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGR---DGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
..|.+-|....+ .+.+.... ....-.|+| +|+. ++..+. +..|.++|+.+++... +.........
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~---~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~--- 237 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG---LNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVV--- 237 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC---CeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEe---
Confidence 456665654333 33333222 378999999 9874 554333 3568889998775321 1111111100
Q ss_pred eecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec-CCcCeEEEEeCCCcceeeEecccccC
Q 022870 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCG 194 (291)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~~wd~~~~~~~~~~~~~~~~ 194 (291)
..|+|||+.++++.. ..+..|.++|+.+++. ..+..
T Consensus 238 --------------------------------------~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~---- 274 (419)
T PRK04043 238 --------------------------------------SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN---- 274 (419)
T ss_pred --------------------------------------eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc----
Confidence 338999988776433 2245688889887763 33431
Q ss_pred CCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC--cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC
Q 022870 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA 272 (291)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 272 (291)
+.. ...... |+|+ |+.++++....| .|+++|+.+ ++....... ... ...|+|+|+.|+-.+.
T Consensus 275 ----~~~----~d~~p~-~SPD---G~~I~F~Sdr~g~~~Iy~~dl~~-g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 275 ----YPG----IDVNGN-FVED---DKRIVFVSDRLGYPNIFMKKLNS-GSVEQVVFH-GKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred ----CCC----ccCccE-ECCC---CCEEEEEECCCCCceEEEEECCC-CCeEeCccC-CCc--CceECCCCCEEEEEEc
Confidence 111 112223 9998 543444444444 688888876 443222221 111 2489999999876654
Q ss_pred C---------CeEEEEEcCCCce
Q 022870 273 D---------QKIVLYNLDHSTV 286 (291)
Q Consensus 273 d---------g~i~vw~~~~~~~ 286 (291)
. ..|.+.|++++..
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCe
Confidence 3 3688888887764
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=6.3e-07 Score=72.96 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
.....|.|++++|+...|+.|+.||.|.+||...+..... + ..- ..+.++|+| +|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~--~P~~iaWHp--~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEF--IPTLIAWHP--DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecc--cceEEEEcC--CCcEEEEEcCCceEEEEEeec
Confidence 4678899999999999999999999999999876533322 2 222 268999999 999999999999999999876
Q ss_pred CCC
Q 022870 96 GGL 98 (291)
Q Consensus 96 ~~~ 98 (291)
...
T Consensus 331 spi 333 (545)
T PF11768_consen 331 SPI 333 (545)
T ss_pred Ccc
Confidence 543
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.1e-07 Score=80.83 Aligned_cols=206 Identities=12% Similarity=0.148 Sum_probs=117.5
Q ss_pred EEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCC
Q 022870 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (291)
Q Consensus 52 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (291)
..+++..+. ...+|++|+. +.+.|+.|+..|.|+++++.++.... ....+........-+..++..........
T Consensus 1093 ~w~~frd~~--~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1093 SWRSFRDET--ALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred cchhhhccc--cceeeEEeec--CCceEEeeeccceEEEEEccCccccc--cccccccccccccccCCcceeeeeccccC
Confidence 344555565 4499999999 88999999999999999999886543 11222222111111111111111111111
Q ss_pred -CceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeE
Q 022870 132 -PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 210 (291)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (291)
....|+..........+.+...+.|+..-..-+ .|.......+||+.++..+.++-. +........ ...
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~--~gt~~d~a~~YDvqT~~~l~tylt-------~~~~~~y~~-n~a 1236 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRA--LGTEADDALLYDVQTCSPLQTYLT-------DTVTSSYSN-NLA 1236 (1516)
T ss_pred chHHHhccccccCccccccccceeehhhhHHHHH--hcccccceEEEecccCcHHHHhcC-------cchhhhhhc-ccc
Confidence 223344433222222233322266765533223 233345789999999988777432 111111111 223
Q ss_pred EEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 211 ~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.|+|+. . .++ .|| .+||++. .+.++.|......+. =.|+|+|+.++.-+ .|||+++.++++.+
T Consensus 1237 -~FsP~D---~-LIl---ndG--vLWDvR~-~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1237 -HFSPCD---T-LIL---NDG--VLWDVRI-PEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred -ccCCCc---c-eEe---eCc--eeeeecc-HHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 499983 2 333 344 3899998 577777765443322 35899999988865 48999999988765
No 311
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.54 E-value=3.6e-08 Score=80.54 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=119.6
Q ss_pred ccceeEEEEcC--CCCEEEEecCCCeEEEEeCCCCeE--EEEEeeecCCcceEEEEEeecCCCCeEEEEe----CCCeEE
Q 022870 18 RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG----RDGTVK 89 (291)
Q Consensus 18 ~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----~dg~i~ 89 (291)
...+.|+++.- +..+++.|..+|.|.+-.+....- ......+. .++++++|++. |.+.|++|- .|..+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a--r~Ct~lAwneL-Dtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYA--RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccc--ccccccccccc-cHHHHHhhhhhhcccCCcc
Confidence 34567777654 446889999999999988764321 22233444 55999999995 546666653 256799
Q ss_pred EEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC
Q 022870 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (291)
Q Consensus 90 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 169 (291)
|||+.+.-........+... ...+...++|-.+.+.++ +|.
T Consensus 133 Iwdi~s~ltvPke~~~fs~~-------------------------------------~l~gqns~cwlrd~klvl--aGm 173 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSS-------------------------------------TLDGQNSVCWLRDTKLVL--AGM 173 (783)
T ss_pred ceecccccCCCccccccccc-------------------------------------cccCccccccccCcchhh--ccc
Confidence 99998762211000000000 000000155665544433 677
Q ss_pred CcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEE-ccCCCCceee
Q 022870 170 QLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD-IRNPGIPLTA 247 (291)
Q Consensus 170 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd-~~~~~~~~~~ 247 (291)
..+.++++|++... ....+.. ....+.. +..|+|+ ++++-. ||.|.+|| .++...++..
T Consensus 174 ~sr~~~ifdlRqs~~~~~svnT----------k~vqG~t--Vdp~~~n------Y~cs~~-dg~iAiwD~~rnienpl~~ 234 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSVSSVNT----------KYVQGIT--VDPFSPN------YFCSNS-DGDIAIWDTYRNIENPLQI 234 (783)
T ss_pred ccchhhhhhhhhhhhhhhhhhh----------hhcccce--ecCCCCC------ceeccc-cCceeeccchhhhccHHHH
Confidence 77899999998432 2222221 0112221 1125554 666655 99999999 6654566666
Q ss_pred cccccc----ceeEEEeecCCC-eeEEecCC-CeEEEEEcCC
Q 022870 248 MKVHLE----PVLCLSIDESCN-GGISGGAD-QKIVLYNLDH 283 (291)
Q Consensus 248 ~~~h~~----~v~~~~~~~~~~-~l~s~s~d-g~i~vw~~~~ 283 (291)
+..... .+..++|.|... .+++...| ++|+++++..
T Consensus 235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 553333 389999977432 34555544 7899998753
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.53 E-value=0.00019 Score=55.11 Aligned_cols=209 Identities=9% Similarity=0.037 Sum_probs=116.2
Q ss_pred eeEEEEcC-CCCEEEEecCCCe-EEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC-----CCeEEEEEC
Q 022870 21 VTDVCFHQ-TKPILFAGTTGGE-LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR-----DGTVKCWDI 93 (291)
Q Consensus 21 v~~l~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~ 93 (291)
...++.+| .+..++.+-.-|+ ..+||..+++....+........--.-.|++ ||++|++.-. .|.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~--dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP--DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC--CCCEEEEeccccCCCcEEEEEEEC
Confidence 34577888 5666777766655 6789999999888776544321223567999 9999998644 478999999
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC----
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE---- 169 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---- 169 (291)
... ..+ +-++......... +.+.|||+.++++-|.
T Consensus 85 ~~~-~~r--i~E~~s~GIGPHe--------------------------------------l~l~pDG~tLvVANGGI~Th 123 (305)
T PF07433_consen 85 ARG-YRR--IGEFPSHGIGPHE--------------------------------------LLLMPDGETLVVANGGIETH 123 (305)
T ss_pred cCC-cEE--EeEecCCCcChhh--------------------------------------EEEcCCCCEEEEEcCCCccC
Confidence 822 211 1122211110000 3355555555544332
Q ss_pred ------------CcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec-CCC-----
Q 022870 170 ------------QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDG----- 231 (291)
Q Consensus 170 ------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~-~dg----- 231 (291)
.+.++...|.++++.+.+..... .-| ...+--++ +.++ |. ++.|. ..|
T Consensus 124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~----~~~----~lSiRHLa-~~~~---G~--V~~a~Q~qg~~~~~ 189 (305)
T PF07433_consen 124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP----DLH----QLSIRHLA-VDGD---GT--VAFAMQYQGDPGDA 189 (305)
T ss_pred cccCceecChhhcCCceEEEecCCCceeeeeecCc----ccc----ccceeeEE-ecCC---Cc--EEEEEecCCCCCcc
Confidence 23456666777777666543200 011 11122222 4444 32 22222 111
Q ss_pred --cEEEEEccCCCCceee-------ccccccceeEEEeecCCCeeEEec-CCCeEEEEEcCCCceeee
Q 022870 232 --SILVWDIRNPGIPLTA-------MKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 232 --~i~vwd~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~~~~~ 289 (291)
-|.+++.. ..+.. ...-.+.+-+|++++++.+++..| .-|.+.+||..+++++..
T Consensus 190 ~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 190 PPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred CCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 12233222 11111 222346788999999998775444 578999999999998754
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.6e-05 Score=67.66 Aligned_cols=208 Identities=14% Similarity=0.181 Sum_probs=117.9
Q ss_pred EEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCe-----EEEEECCCCCCC
Q 022870 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT-----VKCWDIENGGLS 99 (291)
Q Consensus 25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~ 99 (291)
+|++.+..++.|+.+|.|.+.+ ..-+.++.++.+... -|..+.... +.++|++.+.|+. |++||++..+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~s-iv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQS-IVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchh-hhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4567777999999999998887 345555778877642 244443333 4468888777654 999999865321
Q ss_pred CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (291)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~ 179 (291)
..|... ..+......+.....|... ++.+.+-. .+++|-.+|.|.++.-
T Consensus 106 ~sP~c~-~~~ri~~~~np~~~~p~s~----------------------------l~Vs~~l~--~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 106 NSPQCL-YEHRIFTIKNPTNPSPASS----------------------------LAVSEDLK--TIVCGFTNGLVICYKG 154 (933)
T ss_pred CCccee-eeeeeeccCCCCCCCcceE----------------------------EEEEcccc--EEEEEecCcEEEEEcC
Confidence 101000 0000000000000000000 44555533 3337989999999843
Q ss_pred C--Ccc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce-eeccccccce
Q 022870 180 N--TAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKVHLEPV 255 (291)
Q Consensus 180 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~h~~~v 255 (291)
. ..+ ....+. .+...+++.+. |..+ +...+.+++ ...|.+|.+.. ..|. ..+..|...+
T Consensus 155 Di~RDrgsr~~~~-----------~~~~~pITgL~-~~~d---~~s~lFv~T-t~~V~~y~l~g-r~p~~~~ld~~G~~l 217 (933)
T KOG2114|consen 155 DILRDRGSRQDYS-----------HRGKEPITGLA-LRSD---GKSVLFVAT-TEQVMLYSLSG-RTPSLKVLDNNGISL 217 (933)
T ss_pred cchhccccceeee-----------ccCCCCceeeE-EecC---CceeEEEEe-cceeEEEEecC-CCcceeeeccCCccc
Confidence 2 111 111111 22356788887 7766 332233333 34699999985 3344 4477788899
Q ss_pred eEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 256 LCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
++-.+++....+++++. ..+.+|+....+
T Consensus 218 nCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 218 NCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred eeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 99999776665666553 458888877544
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=3.2e-06 Score=72.27 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=103.6
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---------CCeEEE
Q 022870 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---------DGTVKC 90 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~i 90 (291)
.|+-|+. +++++.+|...|+|.+-|.++.+.++++..|.+. |..+.. .|++|+++|. |..|++
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s--iSDfDv----~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS--ISDFDV----QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccc--eeeeec----cCCeEEEeecccccccccccchhhh
Confidence 3555554 5678999999999999999999999999999966 877665 4589999886 456889
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (291)
||++..+.+. ...++..+ .. +.|+|.=...++++.+
T Consensus 251 YDLRmmral~--PI~~~~~P--~f---------------------------------------lrf~Psl~t~~~V~S~- 286 (1118)
T KOG1275|consen 251 YDLRMMRALS--PIQFPYGP--QF---------------------------------------LRFHPSLTTRLAVTSQ- 286 (1118)
T ss_pred hhhhhhhccC--CcccccCc--hh---------------------------------------hhhcccccceEEEEec-
Confidence 9999876543 11111111 00 4477765555554444
Q ss_pred cCeEEEEeCCCc-ce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 171 LSEVEIWDLNTA-ER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 171 d~~i~~wd~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
.|...+-|..+. .+ ...+. ..+....+.++. ++++ |+ .++.|..+|.|.+|--+
T Consensus 287 sGq~q~vd~~~lsNP~~~~~~----------v~p~~s~i~~fD-iSsn---~~-alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVKM----------VNPNGSGISAFD-ISSN---GD-ALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccceeeccccccCCCccceeE----------EccCCCcceeEE-ecCC---Cc-eEEEecccCcEeeecCC
Confidence 588888884322 11 11111 111233467776 8887 44 99999999999999843
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.7e-06 Score=71.58 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=105.5
Q ss_pred cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (291)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
+.+.|++++. ..|+-|.-+|.|++++...... . ...+..
T Consensus 40 D~is~~av~~----~~~~~GtH~g~v~~~~~~~~~~-~-----~~~~s~------------------------------- 78 (846)
T KOG2066|consen 40 DAISCCAVHD----KFFALGTHRGAVYLTTCQGNPK-T-----NFDHSS------------------------------- 78 (846)
T ss_pred hHHHHHHhhc----ceeeeccccceEEEEecCCccc-c-----cccccc-------------------------------
Confidence 3477888875 8999999999999999875421 0 000000
Q ss_pred cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC--CCCC
Q 022870 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--KSQG 220 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g 220 (291)
-.-+|+++. +++.||+|.|-.+-+.+...++. ...++-+++ ++|+ ....
T Consensus 79 -------------~~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~d-------------f~rpiksia-l~Pd~~~~~s 129 (846)
T KOG2066|consen 79 -------------SILEGEYVA--SCSDDGKVVIGSLFTDDEITQYD-------------FKRPIKSIA-LHPDFSRQQS 129 (846)
T ss_pred -------------cccCCceEE--EecCCCcEEEeeccCCccceeEe-------------cCCcceeEE-eccchhhhhh
Confidence 123566554 78889999999988887766665 234566676 9997 2223
Q ss_pred ceEEEeecCCCcEEEEEccCCCCcee-eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 221 FVNVLAGYEDGSILVWDIRNPGIPLT-AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 221 ~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
+ .+++|+.-| +.++.-+=.+.... .+..-.++|.++.|..+ ++|=++.+| |+|||+.+++.+-.
T Consensus 130 k-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWand~G-v~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 130 K-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWANDDG-VKVYDTPTRQRLTN 194 (846)
T ss_pred h-heeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--EEEEecCCC-cEEEeccccceeec
Confidence 3 789999998 87876543222222 35555789999999887 888888777 99999999887643
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.41 E-value=0.00036 Score=52.63 Aligned_cols=220 Identities=10% Similarity=0.061 Sum_probs=111.7
Q ss_pred EEecCCccceeEEEEcCC-CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 12 AVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
+.+.+-...+..|+|+|+ +.++++....+.|...+. +|+.++.+..... .-.-.|++.. ++.++++--.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g--~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF-GDYEGITYLG--NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC-CCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence 456676777999999996 556677788899988886 5888887765432 3378888887 7666666656899999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (291)
+++...... +.........+...... -.+-.+++|+|.+..++++--
T Consensus 91 ~~~~~~~~~------~~~~~~~~~~l~~~~~~-------------------------N~G~EGla~D~~~~~L~v~kE-- 137 (248)
T PF06977_consen 91 FTIDDDTTS------LDRADVQKISLGFPNKG-------------------------NKGFEGLAYDPKTNRLFVAKE-- 137 (248)
T ss_dssp EEE----TT--------EEEEEEEE---S----------------------------SS--EEEEEETTTTEEEEEEE--
T ss_pred EEEeccccc------cchhhceEEecccccCC-------------------------CcceEEEEEcCCCCEEEEEeC--
Confidence 998654321 11111111100000000 000001789999888887532
Q ss_pred cCeEEEEeCCC---cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 171 LSEVEIWDLNT---AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 171 d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
..-..+|.++. ...+......... . .........++. |+|. .|+ +++....+..|..+|.. ++++..
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~d~S~l~-~~p~--t~~-lliLS~es~~l~~~d~~--G~~~~~ 207 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLD---D-DKLFVRDLSGLS-YDPR--TGH-LLILSDESRLLLELDRQ--GRVVSS 207 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-----HT--SS---EEE-EETT--TTE-EEEEETTTTEEEEE-TT----EEEE
T ss_pred CCChhhEEEccccCccceeeccccccc---c-ccceeccccceE-EcCC--CCe-EEEEECCCCeEEEECCC--CCEEEE
Confidence 33455555543 1111111100000 0 000122345665 8887 255 77888889999999954 676654
Q ss_pred ccccc---------cceeEEEeecCCCeeEEecCCCeEEEE
Q 022870 248 MKVHL---------EPVLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 248 ~~~h~---------~~v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
+.-.. ...-+|+|+++|++. ..|+-+..+++
T Consensus 208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred EEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 43211 256799999999754 44566666665
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.40 E-value=0.00016 Score=55.52 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=42.8
Q ss_pred EEEcCCCCEEEEe-----cCCCeEEEEeCC-CCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 24 VCFHQTKPILFAG-----TTGGELRIWDTV-QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 24 l~~~~~~~~l~s~-----~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
-.|++||++|++. ...|.|-|||.. +-+.+.++..+.- .-..+.+.| ||..|+.+-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI--GPHel~l~p--DG~tLvVAN 117 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI--GPHELLLMP--DGETLVVAN 117 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc--ChhhEEEcC--CCCEEEEEc
Confidence 5799999999885 335889999998 5577777777652 257888999 987777653
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.40 E-value=9.9e-07 Score=45.49 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=34.9
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 46 (291)
+++..+.+|...|++++|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56778889999999999999889999999999999996
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=0.00028 Score=58.04 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=59.2
Q ss_pred ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
...+.+.+ ++|+.. .++.|+.||.|.+||... + +..+....-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus 259 ~s~v~~ca-~sp~E~----kLvlGC~DgSiiLyD~~~-~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 259 PSQVICCA-RSPSED----KLVLGCEDGSIILYDTTR-G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCcceEEe-cCcccc----eEEEEecCCeEEEEEcCC-C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 44566665 999844 899999999999999875 3 222333455688999999999999999999999999875
Q ss_pred Cce
Q 022870 284 STV 286 (291)
Q Consensus 284 ~~~ 286 (291)
.-+
T Consensus 331 spi 333 (545)
T PF11768_consen 331 SPI 333 (545)
T ss_pred Ccc
Confidence 443
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.38 E-value=0.00049 Score=52.58 Aligned_cols=183 Identities=15% Similarity=0.155 Sum_probs=105.5
Q ss_pred eeEEEEc-CCCCEEEEecCCCeEEEEeCCCCeEEEEEeee--c-CCcceEEEEEeecCCCCeEEEEeCC--------CeE
Q 022870 21 VTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVH--S-AAHGIVSVATGPSIGLNKVISQGRD--------GTV 88 (291)
Q Consensus 21 v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i 88 (291)
...+++. +++. |+.+..++ +.++|..+++........ . .......+++.| +|++.++.... |.|
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccce
Confidence 5667777 6664 44455544 555699888655444431 1 224578999999 88877765543 446
Q ss_pred EEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec
Q 022870 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (291)
Q Consensus 89 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 168 (291)
..++.. ++... . .... ..+.. ++|+|+++.+++ +-
T Consensus 118 ~~~~~~-~~~~~--~--~~~~------~~pNG---------------------------------i~~s~dg~~lyv-~d 152 (246)
T PF08450_consen 118 YRIDPD-GKVTV--V--ADGL------GFPNG---------------------------------IAFSPDGKTLYV-AD 152 (246)
T ss_dssp EEEETT-SEEEE--E--EEEE------SSEEE---------------------------------EEEETTSSEEEE-EE
T ss_pred EEECCC-CeEEE--E--ecCc------ccccc---------------------------------eEECCcchheee-cc
Confidence 666655 32110 0 0000 00000 679999987765 45
Q ss_pred CCcCeEEEEeCCCcce----eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCc
Q 022870 169 EQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (291)
Q Consensus 169 ~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~ 244 (291)
+..+.|..||+..... ...+.. . ....+..-.++ +..+ |. +.++....+.|.++|.+ ++.
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~--------~-~~~~g~pDG~~-vD~~---G~-l~va~~~~~~I~~~~p~--G~~ 216 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFID--------F-PGGPGYPDGLA-VDSD---GN-LWVADWGGGRIVVFDPD--GKL 216 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE----------SSSSCEEEEEE-EBTT---S--EEEEEETTTEEEEEETT--SCE
T ss_pred cccceeEEEeccccccceeeeeeEEE--------c-CCCCcCCCcce-EcCC---CC-EEEEEcCCCEEEEECCC--ccE
Confidence 5578899999864322 122210 0 00112344454 7766 55 66666678999999987 777
Q ss_pred eeeccccccceeEEEe-ecCCCeeE
Q 022870 245 LTAMKVHLEPVLCLSI-DESCNGGI 268 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~-~~~~~~l~ 268 (291)
+..+......+++++| .++.+.|+
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEE
Confidence 7777765568999999 45545443
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=5.8e-05 Score=63.38 Aligned_cols=185 Identities=15% Similarity=0.054 Sum_probs=113.7
Q ss_pred EcCCCCEEE-EecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC----eEEEEECCCCCCCC
Q 022870 26 FHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG----TVKCWDIENGGLSS 100 (291)
Q Consensus 26 ~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~ 100 (291)
++|||+.+. +.-..+.+.+.|.++.+...++..... ..-+.+++ +|.++++.+.+. ++..-+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn---pd~v~~sp--dGk~afvTsyNsE~G~tl~em~a~e~---- 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGN---LDNVDTDY--DGKYAFSTCYNSEEGVTLAEMMAAER---- 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCC---cccceECC--CCCEEEEeccCcccCcceeeeccccC----
Confidence 445665542 233456677888887777777665432 46778888 888888776422 1211111110
Q ss_pred CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCC
Q 022870 101 NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180 (291)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~ 180 (291)
.....+.+... .++.++|++.++ + ++.|.+.|.+
T Consensus 271 ----------d~~vvfni~~i--------------------------------ea~vkdGK~~~V--~--gn~V~VID~~ 304 (635)
T PRK02888 271 ----------DWVVVFNIARI--------------------------------EEAVKAGKFKTI--G--GSKVPVVDGR 304 (635)
T ss_pred ----------ceEEEEchHHH--------------------------------HHhhhCCCEEEE--C--CCEEEEEECC
Confidence 01111111100 125677876664 2 4789999999
Q ss_pred C-----cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-----------c
Q 022870 181 T-----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----------P 244 (291)
Q Consensus 181 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----------~ 244 (291)
+ .+.+..+.. ......+. ++|+ |++.++++..+..|.|+|+.+... .
T Consensus 305 t~~~~~~~v~~yIPV-------------GKsPHGV~-vSPD---GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 305 KAANAGSALTRYVPV-------------PKNPHGVN-TSPD---GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred ccccCCcceEEEEEC-------------CCCccceE-ECCC---CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 8 445555552 22345555 9998 665667777799999999987322 1
Q ss_pred eeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
+.+..--.+ ....+|+++|+...|--.|..|..|++..
T Consensus 368 vaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333233 35678999999888899999999999986
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.35 E-value=0.00026 Score=58.18 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=90.7
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE-----EEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-----SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 103 (291)
.+..++.++.+|.+.-+|.++|+.+...+......... .+.-.|..++..++.++.+|.+..+|.++++..++.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~- 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT- 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc-
Confidence 45578888889999999999999887765432100000 001111113467888889999999999999876621
Q ss_pred cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc
Q 022870 104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183 (291)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~ 183 (291)
...... .. .+ .. .+..+++ +..++.+.-+|.++++
T Consensus 147 -~~~~~~--~s------sP--------------------------------~v--~~~~v~v--~~~~g~l~ald~~tG~ 181 (394)
T PRK11138 147 -KVAGEA--LS------RP--------------------------------VV--SDGLVLV--HTSNGMLQALNESDGA 181 (394)
T ss_pred -cCCCce--ec------CC--------------------------------EE--ECCEEEE--ECCCCEEEEEEccCCC
Confidence 111100 00 00 01 1234443 4447899999999999
Q ss_pred eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceee
Q 022870 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (291)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~ 247 (291)
.+..+.... ......+. -+|.-.++ .++.++.+|.+..+|..+ ++.+..
T Consensus 182 ~~W~~~~~~------~~~~~~~~------~sP~v~~~--~v~~~~~~g~v~a~d~~~-G~~~W~ 230 (394)
T PRK11138 182 VKWTVNLDV------PSLTLRGE------SAPATAFG--GAIVGGDNGRVSAVLMEQ-GQLIWQ 230 (394)
T ss_pred EeeeecCCC------CcccccCC------CCCEEECC--EEEEEcCCCEEEEEEccC-Chhhhe
Confidence 887776310 00000000 11110012 466677888999888887 555443
No 323
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.34 E-value=0.00011 Score=47.11 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=52.5
Q ss_pred eeEEEEcC---CC-CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 21 VTDVCFHQ---TK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 21 v~~l~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
|++|++.. +| +.|+.|+.|..||+|+ ..+.+.++... +.|+++.-.. . .+++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~---~~v~~L~~~~--~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET---DKVTSLCSLG--G-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc---cceEEEEEcC--C-CEEEEEecCCEEEEEeCcc
Confidence 67777765 32 5899999999999998 34677776655 4488988887 5 7899999999999998643
No 324
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.25 E-value=0.00038 Score=62.79 Aligned_cols=235 Identities=13% Similarity=0.143 Sum_probs=118.6
Q ss_pred eEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeee--cCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 22 TDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVH--SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
.+++|-|.|+++|+... ...|.+|. ++|-....|... .....|..+.|++ ++..|+..-.|. |.+|-..+-
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~--ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNS--DSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECC--CCCEEEEEecCC-ceEEEeeCC
Confidence 46799999999998754 45677887 456655555543 2225699999999 989998877665 999988765
Q ss_pred CCCCCCccccccc-eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEE
Q 022870 97 GLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (291)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 175 (291)
....+..+..... ......+.+...........++....+++.-.-... -..+|++...+++.- ...++
T Consensus 336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s--------~~~~~~D~g~vaVID--G~~ll 405 (928)
T PF04762_consen 336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS--------PGSSPNDNGTVAVID--GNKLL 405 (928)
T ss_pred EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec--------CCCCccCceEEEEEe--CCeEE
Confidence 4322111111111 001122222111111111111111111110000000 001122222222221 12455
Q ss_pred EEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC-----c--eeec
Q 022870 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-----P--LTAM 248 (291)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~-----~--~~~~ 248 (291)
+-.++.....--+. .+.-.....+..++ |+++.. .+++-..||.|.+|....... + ...+
T Consensus 406 lTpf~~a~VPPPMs--------~~~l~~~~~v~~va-f~~~~~----~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~ 472 (928)
T PF04762_consen 406 LTPFRRAVVPPPMS--------SYELELPSPVNDVA-FSPSNS----RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI 472 (928)
T ss_pred EecccccCCCchHh--------ceEEcCCCCcEEEE-EeCCCC----eEEEEECCCCEEEEEecCCCcccccCcchhhhc
Confidence 55554332111111 12222345677787 998843 588889999999998543111 1 1111
Q ss_pred c----------ccccceeEEEeecCCCeeEEecCC---CeEEEEEcCC
Q 022870 249 K----------VHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDH 283 (291)
Q Consensus 249 ~----------~h~~~v~~~~~~~~~~~l~s~s~d---g~i~vw~~~~ 283 (291)
. .-...+..++|..+..+++..+.+ ..+.++++..
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 473 SLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred ccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence 1 123457888886666655555443 6788888743
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.24 E-value=0.0013 Score=51.41 Aligned_cols=219 Identities=11% Similarity=0.107 Sum_probs=118.3
Q ss_pred eEEEEcCCCCEEEEe--cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870 22 TDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 99 (291)
..++++.||++++.. +--..|.|-|+..++.+.++.... +..+--++ + +.|.+.+.||++.-..+......
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~--~-~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG--N-RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE--T-TEEEEEETTSCEEEEEETSTSSE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC--C-CceEEEecCCceEEEEECCCCCE
Confidence 346788888877664 445679999999999888776543 44444344 3 56889999999999999854321
Q ss_pred CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeC
Q 022870 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (291)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~ 179 (291)
. ......|.....+.... -++...+..++..+ .+|.|+--|+
T Consensus 171 ~---------~~~t~~F~~~~dp~f~~---------------------------~~~~~~~~~~~F~S--y~G~v~~~dl 212 (342)
T PF06433_consen 171 A---------QKSTKVFDPDDDPLFEH---------------------------PAYSRDGGRLYFVS--YEGNVYSADL 212 (342)
T ss_dssp E---------EEEEEESSTTTS-B-S-----------------------------EEETTTTEEEEEB--TTSEEEEEEE
T ss_pred e---------EeeccccCCCCcccccc---------------------------cceECCCCeEEEEe--cCCEEEEEec
Confidence 1 11111222221111000 11222333444322 3688888888
Q ss_pred CCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe-ec-----CCC--cEEEEEccCCCCceeecccc
Q 022870 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GY-----EDG--SILVWDIRNPGIPLTAMKVH 251 (291)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~-g~-----~dg--~i~vwd~~~~~~~~~~~~~h 251 (291)
........-..........-.....+- +.+.++++. .++.|++. .+ .|+ .|.++|+.+ ++.+..+..
T Consensus 213 sg~~~~~~~~~~~~t~~e~~~~WrPGG-~Q~~A~~~~--~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l- 287 (342)
T PF06433_consen 213 SGDSAKFGKPWSLLTDAEKADGWRPGG-WQLIAYHAA--SGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL- 287 (342)
T ss_dssp TTSSEEEEEEEESS-HHHHHTTEEE-S-SS-EEEETT--TTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE-
T ss_pred cCCcccccCcccccCccccccCcCCcc-eeeeeeccc--cCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC-
Confidence 765432211110000000000000011 111136554 24423322 11 122 588888888 888888875
Q ss_pred ccceeEEEeecCCC-eeEEe-cCCCeEEEEEcCCCceeeee
Q 022870 252 LEPVLCLSIDESCN-GGISG-GADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 252 ~~~v~~~~~~~~~~-~l~s~-s~dg~i~vw~~~~~~~~~~~ 290 (291)
..++.+|+.+.+.+ +|++. ..++.+.+||..++++++++
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 45788999976655 55444 46899999999999999875
No 326
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.22 E-value=0.00053 Score=50.81 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=51.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEE-EeecCCCCeEEEEeCCCeEEEEECCCCCCCC
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA-TGPSIGLNKVISQGRDGTVKCWDIENGGLSS 100 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 100 (291)
|++++.|+..|.+.+-+.++|+....+..... |.+-+ ..+ ++..+..|+.|++.+..|.++..++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk~~a~~d~--~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VKVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhh---hccceEEcC--CCceEEEecCCCcEEEecccccceEE
Confidence 55788899999999999999988777765432 43332 344 77899999999999999999876644
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.18 E-value=0.0013 Score=53.50 Aligned_cols=223 Identities=11% Similarity=0.099 Sum_probs=110.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE-------------------------EE----------------ee
Q 022870 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-------------------------SS----------------WV 58 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-------------------------~~----------------~~ 58 (291)
.|+.+.|.++...|+.|...|.|.||.....+... .+ -.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999988899999999999998754321110 00 01
Q ss_pred ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCcccc------ccceEEEEEeecccCccceeccCCCC
Q 022870 59 HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI------KTNSYHFCKLSLVKEPYANAKQANEP 132 (291)
Q Consensus 59 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (291)
+....+|++++.+. =.+++.|.++|.+.|.|++....+.+....- .........|.+
T Consensus 83 ~~~~g~vtal~~S~---iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v-------------- 145 (395)
T PF08596_consen 83 DAKQGPVTALKNSD---IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV-------------- 145 (395)
T ss_dssp ---S-SEEEEEE-B---TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE--------------
T ss_pred eccCCcEeEEecCC---CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE--------------
Confidence 11225699999875 3799999999999999998776543111111 000000111111
Q ss_pred ceeeecccCccccccCCCCCCcccCCCC-CcEEEEecCCcCeEEEEeCC-C--cceeeEecccccCCCCCCCCCcceeee
Q 022870 133 KDCYEREVGETVDTDSLCDSKDDVPAEG-PKYMAVAGEQLSEVEIWDLN-T--AERCTRLHQNSCGGSPNFSSKGRGMCM 208 (291)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~~wd~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (291)
+.+.-|+ ..+.+.+|...|.+.+|.+. . +.....+.. ......+.+.
T Consensus 146 ---------------------m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~--------~~~~~~~~i~ 196 (395)
T PF08596_consen 146 ---------------------MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG--------ATTNHDSPIL 196 (395)
T ss_dssp ---------------------EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE--------EE--SS----
T ss_pred ---------------------EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee--------ccccCCCceE
Confidence 1111222 12333356667999999764 1 111112211 0001123344
Q ss_pred eEEEecCCCC--------------CCc--eEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe-----ecCCCee
Q 022870 209 AVQAYLPSKS--------------QGF--VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----DESCNGG 267 (291)
Q Consensus 209 ~~~~~~p~~~--------------~g~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----~~~~~~l 267 (291)
.+..|+.+.. .|. .-++....+..++++..-+ .+.........-....+.+ ...+..|
T Consensus 197 ~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~L 275 (395)
T PF08596_consen 197 SIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFDDPFLCSSASVVPTISRNGGYCL 275 (395)
T ss_dssp EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEEEEE
T ss_pred EEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC-CcccceeeccccccceEEEEeecccCCceEE
Confidence 4333432200 000 0233334467899999887 5544433322223334444 3466788
Q ss_pred EEecCCCeEEEEEcCCCceeee
Q 022870 268 ISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 268 ~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
++-..+|.|+++.+..=+.+..
T Consensus 276 v~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 276 VCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp EEEETTSEEEEEETTT--EEEE
T ss_pred EEEECCCcEEEEECCCchHhhc
Confidence 8999999999999988666543
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.2e-05 Score=62.59 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=69.0
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
++|+|..+-++. .++.+..|+|.|+++...+..+. . ...+++++ |.-+ ..++|.+|-.+|.|
T Consensus 199 lafSp~~~GLl~-~asl~nkiki~dlet~~~vssy~--------a-----~~~~wSC~-wDld---e~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 199 LAFSPFNEGLLG-LASLGNKIKIMDLETSCVVSSYI--------A-----YNQIWSCC-WDLD---ERHVIYAGLQNGMV 260 (463)
T ss_pred hccCccccceee-eeccCceEEEEecccceeeehee--------c-----cCCceeee-eccC---CcceeEEeccCceE
Confidence 889999876655 57778999999999998888777 2 34677776 8877 34499999999999
Q ss_pred EEEEccCCCCceeecccc--ccceeEEEe
Q 022870 234 LVWDIRNPGIPLTAMKVH--LEPVLCLSI 260 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h--~~~v~~~~~ 260 (291)
.|||++.+..++..+.+. ..+|..++.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~ 289 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAP 289 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecc
Confidence 999999877777777652 345655554
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00032 Score=57.57 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=66.1
Q ss_pred cccCCCCCcEEEEecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870 154 DDVPAEGPKYMAVAGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (291)
.+|+|||+.+++ +...||. |.++|+..++..+ +.. - .+....- .|+|+ |+.++++.+..|
T Consensus 243 P~fspDG~~l~f-~~~rdg~~~iy~~dl~~~~~~~-Lt~--------~----~gi~~~P-s~spd---G~~ivf~Sdr~G 304 (425)
T COG0823 243 PAFSPDGSKLAF-SSSRDGSPDIYLMDLDGKNLPR-LTN--------G----FGINTSP-SWSPD---GSKIVFTSDRGG 304 (425)
T ss_pred ccCCCCCCEEEE-EECCCCCccEEEEcCCCCccee-ccc--------C----CccccCc-cCCCC---CCEEEEEeCCCC
Confidence 569999988776 4555666 6666777766333 432 1 1111122 39998 554666666677
Q ss_pred cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecC-CCe--EEEEEcCCCc
Q 022870 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQK--IVLYNLDHST 285 (291)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-dg~--i~vw~~~~~~ 285 (291)
.-.||-+.-.+.-...+......=..-.|+|+|++++..+. +|. |.+.|+.++.
T Consensus 305 ~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 65555443323433444433332236678999999987664 344 6666665544
No 330
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.14 E-value=6e-06 Score=42.39 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=34.1
Q ss_pred CCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
.++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999889999999999999996
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.003 Score=51.41 Aligned_cols=237 Identities=13% Similarity=0.186 Sum_probs=111.1
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeec------CCcceEEEEEeec---CCC---C
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------AAHGIVSVATGPS---IGL---N 77 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~---~ 77 (291)
|..-++...++|++++.|.-| ++|.|..+|.+.|.|++....+..-.... ....|+++.|.-. .|+ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 455566678999999999777 99999999999999998777776532221 2245888888631 122 3
Q ss_pred eEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEee-cccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS-LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (291)
Q Consensus 78 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (291)
.|++|...|.+.+|.+.-...- .+. ....... ....+... ...++.+...........-+.+.-
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g---~f~-----v~~~~~~~~~~~~i~~-------I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNG---RFS-----VQFAGATTNHDSPILS-------IIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG----EE-----EEEEEEE--SS----E-------EEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEeCCCCEEEEEEecCCCC---ceE-----EEEeeccccCCCceEE-------EEEEECCCCCcccCchhHhhcccc
Confidence 6788999999999988521100 001 0110000 00000000 000000000000000000000000
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC--CCCCceEEEeecCCCcEE
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--KSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~l~~g~~dg~i~ 234 (291)
-..-+.++++++ +..++++...+.+...+... ....+..+. +-+. ...+. .|++-..+|.|+
T Consensus 222 g~~i~g~vVvvS--e~~irv~~~~~~k~~~K~~~------------~~~~~~~~~-vv~~~~~~~~~-~Lv~l~~~G~i~ 285 (395)
T PF08596_consen 222 GISIPGYVVVVS--ESDIRVFKPPKSKGAHKSFD------------DPFLCSSAS-VVPTISRNGGY-CLVCLFNNGSIR 285 (395)
T ss_dssp T----EEEEEE---SSEEEEE-TT---EEEEE-S------------S-EEEEEEE-EEEEE-EEEEE-EEEEEETTSEEE
T ss_pred CCCcCcEEEEEc--ccceEEEeCCCCcccceeec------------cccccceEE-EEeecccCCce-EEEEEECCCcEE
Confidence 011123444344 47899999988776554432 112222222 4221 01122 788889999999
Q ss_pred EEEccCCCCceeecccc----ccceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 235 VWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
+|.+-. -+.+..++.. ...+....++++|..++-.|. ..+.++.
T Consensus 286 i~SLP~-Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 286 IYSLPS-LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp EEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEE
T ss_pred EEECCC-chHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEE
Confidence 999987 5666555542 234556677888886655543 3444443
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=7.6e-07 Score=73.07 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=102.9
Q ss_pred EecCCccceeEEEEcC-CCCEEEEec----CCCeEEEEeCCCC--eEE--EEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 13 VLRGHRASVTDVCFHQ-TKPILFAGT----TGGELRIWDTVQH--RTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 13 ~l~~h~~~v~~l~~~~-~~~~l~s~~----~dg~v~iwd~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
...+|....++++|++ |.+.||.|- .|..+.|||+.++ .+. ..+... ......+++|.. +..++++|.
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlr--d~klvlaGm 173 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLR--DTKLVLAGM 173 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCcccccccc--Ccchhhccc
Confidence 3456788899999999 667777773 3667999999876 222 222221 113466888887 878888999
Q ss_pred CCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcE
Q 022870 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (291)
Q Consensus 84 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
....+.++|++...... ..+....... +...|-....
T Consensus 174 ~sr~~~ifdlRqs~~~~---~svnTk~vqG----------------------------------------~tVdp~~~nY 210 (783)
T KOG1008|consen 174 TSRSVHIFDLRQSLDSV---SSVNTKYVQG----------------------------------------ITVDPFSPNY 210 (783)
T ss_pred ccchhhhhhhhhhhhhh---hhhhhhhccc----------------------------------------ceecCCCCCc
Confidence 99999999998432211 1111111111 3355544445
Q ss_pred EEEecCCcCeEEEEe-CCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccC
Q 022870 164 MAVAGEQLSEVEIWD-LNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRN 240 (291)
Q Consensus 164 ~~~~g~~d~~i~~wd-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~ 240 (291)
+ +...||.|.+|| .+.-+ ++..+.. ...........++ |.|..+ |. +++. -+.++|+.+|+..
T Consensus 211 ~--cs~~dg~iAiwD~~rnienpl~~i~~--------~~N~~~~~l~~~a-ycPtrt-gl--la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 F--CSNSDGDIAIWDTYRNIENPLQIILR--------NENKKPKQLFALA-YCPTRT-GL--LAVLSRDSITIRLYDICV 276 (783)
T ss_pred e--eccccCceeeccchhhhccHHHHHhh--------CCCCcccceeeEE-eccCCc-ch--hhhhccCcceEEEecccc
Confidence 5 445589999999 33322 3333321 1111223567776 999864 64 5544 4568999999864
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00054 Score=56.24 Aligned_cols=187 Identities=16% Similarity=0.119 Sum_probs=100.4
Q ss_pred ecCCccceeEEEEcCCCCEEEEe---cCC-CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCe-
Q 022870 14 LRGHRASVTDVCFHQTKPILFAG---TTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGT- 87 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~- 87 (291)
+..-...+..-+|+|++..++-- ... ..+.++|+++++....+... ..-..-+|+| ||++|+ +...||.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fsp--DG~~l~f~~~rdg~~ 262 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSP--DGSKLAFSSSRDGSP 262 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCC--CCCEEEEEECCCCCc
Confidence 33334556677889988765433 222 46899999988765555422 2245678999 988776 5666776
Q ss_pred -EEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEE
Q 022870 88 -VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (291)
Q Consensus 88 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
|.++|+......+ +........ . -.|+|+|+.++++
T Consensus 263 ~iy~~dl~~~~~~~-----Lt~~~gi~~--~------------------------------------Ps~spdG~~ivf~ 299 (425)
T COG0823 263 DIYLMDLDGKNLPR-----LTNGFGINT--S------------------------------------PSWSPDGSKIVFT 299 (425)
T ss_pred cEEEEcCCCCccee-----cccCCcccc--C------------------------------------ccCCCCCCEEEEE
Confidence 4555666554211 111111000 0 3499999988775
Q ss_pred ecCCcCe--EEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc--EEEEEccCCC
Q 022870 167 AGEQLSE--VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPG 242 (291)
Q Consensus 167 ~g~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~--i~vwd~~~~~ 242 (291)
.+..|. |.++|.+.+.. ..+... +- ... .- .++|+ |..+++....+|. |.+.|+.+..
T Consensus 300 -Sdr~G~p~I~~~~~~g~~~-~riT~~------~~---~~~---~p-~~Spd---G~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 300 -SDRGGRPQIYLYDLEGSQV-TRLTFS------GG---GNS---NP-VWSPD---GDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred -eCCCCCcceEEECCCCCce-eEeecc------CC---CCc---Cc-cCCCC---CCEEEEEeccCCceeeEEeccCCCC
Confidence 444565 55566665544 333310 10 111 22 38998 5534445544555 7777776633
Q ss_pred CceeeccccccceeEEEeecCCCeeE
Q 022870 243 IPLTAMKVHLEPVLCLSIDESCNGGI 268 (291)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~l~ 268 (291)
. +..+.. ......-.|.+++..+.
T Consensus 362 ~-~~~lt~-~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 362 K-IRILTS-TYLNESPSWAPNGRMIM 385 (425)
T ss_pred c-EEEccc-cccCCCCCcCCCCceEE
Confidence 2 333331 22223334455555443
No 334
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=7.4e-06 Score=59.06 Aligned_cols=101 Identities=16% Similarity=0.082 Sum_probs=66.0
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
+|..+|.|.+|.....-...... ....-.+.+--|...++. +.++++.||.||.|++.- .+.+.
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~--------------~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p-~k~~g 138 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRV--------------CSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKP-NKVLG 138 (238)
T ss_pred eecccceEEEecCCccchHHHhh--------------hcccccceeccccccccc-eeEEeccCCceeeecccc-Cceee
Confidence 57779999999887221111110 000011111334333333 889999999999999986 67666
Q ss_pred eccccc-cceeEEEeecCCCeeEEe--cCCCeEEEEEcCC
Q 022870 247 AMKVHL-EPVLCLSIDESCNGGISG--GADQKIVLYNLDH 283 (291)
Q Consensus 247 ~~~~h~-~~v~~~~~~~~~~~l~s~--s~dg~i~vw~~~~ 283 (291)
....|. .++..+.....+.+++.. |.|..++.|++..
T Consensus 139 ~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 139 YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 666777 667777777777778877 8888888888764
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00018 Score=61.74 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=61.1
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|. .+|..+.|++ +|+.++++..-|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEeee
Confidence 5679999988788999999999999987766655556676 5599999999 999999999999999998763
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.004 Score=51.51 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=88.2
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEE
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i 90 (291)
.+.+-...-....+.++|+|++++. +.||.-.|+.....+.... +. -....|.+ . +.+++-..+++|.+
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--G~-----g~~~vw~~--~-n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--GS-----GLSFVWSS--R-NRYAVLESSSTIKI 93 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--EE------SEEEE-T--S-SEEEEE-TTS-EEE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--Cc-----eeEEEEec--C-ccEEEEECCCeEEE
Confidence 4445445566899999999998888 4578888888544443321 22 45677887 5 56777777889999
Q ss_pred EECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCC
Q 022870 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (291)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 170 (291)
+.--+.+... .+.... ..... |. |. ++++.++
T Consensus 94 ~kn~~~~~~k--~i~~~~-~~~~I-----------------------------------------f~--G~-LL~~~~~- 125 (443)
T PF04053_consen 94 YKNFKNEVVK--SIKLPF-SVEKI-----------------------------------------FG--GN-LLGVKSS- 125 (443)
T ss_dssp EETTEE-TT-------SS--EEEE-----------------------------------------E---SS-SEEEEET-
T ss_pred EEcCccccce--EEcCCc-ccceE-----------------------------------------Ec--Cc-EEEEECC-
Confidence 6322222211 111111 01111 22 44 4444443
Q ss_pred cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCC--------
Q 022870 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-------- 242 (291)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~-------- 242 (291)
+.|.+||+.+++.+..+.. . .+..+. |+++ |. +++..+.+ .+++++... .
T Consensus 126 -~~i~~yDw~~~~~i~~i~v-------------~-~vk~V~-Ws~~---g~-~val~t~~-~i~il~~~~-~~~~~~~~~ 183 (443)
T PF04053_consen 126 -DFICFYDWETGKLIRRIDV-------------S-AVKYVI-WSDD---GE-LVALVTKD-SIYILKYNL-EAVAAIPEE 183 (443)
T ss_dssp -TEEEEE-TTT--EEEEESS---------------E-EEEE-E-TT---SS-EEEEE-S--SEEEEEE-H-HHHHHBTTT
T ss_pred -CCEEEEEhhHcceeeEEec-------------C-CCcEEE-EECC---CC-EEEEEeCC-eEEEEEecc-hhccccccc
Confidence 5899999999999998872 2 255665 9988 44 67666644 677777553 1
Q ss_pred ---CceeeccccccceeEEEeecC
Q 022870 243 ---IPLTAMKVHLEPVLCLSIDES 263 (291)
Q Consensus 243 ---~~~~~~~~h~~~v~~~~~~~~ 263 (291)
.....+..-...|.+.+|..+
T Consensus 184 g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 184 GVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp B-GGGEEEEEEE-S--SEEEEETT
T ss_pred CchhceEEEEEecceeEEEEEEcC
Confidence 022233222467888888776
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.9e-05 Score=63.26 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=68.7
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE-EEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
.-.|.-+.|+|.-.++|++..+|.|.+..++ .+.+.++..+... ++ +++|.| ||+.|+.|-.||+|++.|++++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~--v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN--VTASLCWRP--DGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCc--cceeeeecC--CCCEEEEEecCCeEEEEEccCC
Confidence 4567889999999999999999999999987 7788888877643 77 999999 9999999999999999999998
Q ss_pred CCCC
Q 022870 97 GLSS 100 (291)
Q Consensus 97 ~~~~ 100 (291)
..+.
T Consensus 95 ~~l~ 98 (665)
T KOG4640|consen 95 GRLV 98 (665)
T ss_pred Ccee
Confidence 7654
No 338
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.99 E-value=0.00012 Score=55.35 Aligned_cols=119 Identities=8% Similarity=0.165 Sum_probs=74.7
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCC-CcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS-KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (291)
+.|+.|.+.++ ++. |=.|.+|++.-......+-.-. .|.. .....+++.. |+|... . .+.-.+..|.
T Consensus 178 iS~NsD~et~l--SaD-dLrINLWnl~i~D~sFnIVDiK-----P~nmeeLteVItSae-Fhp~~c--n-~fmYSsSkG~ 245 (460)
T COG5170 178 ISFNSDKETLL--SAD-DLRINLWNLEIIDGSFNIVDIK-----PHNMEELTEVITSAE-FHPEMC--N-VFMYSSSKGE 245 (460)
T ss_pred eeecCchheee--ecc-ceeeeeccccccCCceEEEecc-----CccHHHHHHHHhhcc-cCHhHc--c-eEEEecCCCc
Confidence 67777776665 444 7889999987543322221100 1211 1233455565 999743 2 6777788999
Q ss_pred EEEEEccCCC-----Cceeec----------cccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 233 ILVWDIRNPG-----IPLTAM----------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 233 i~vwd~~~~~-----~~~~~~----------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
|++-|+++.. ..+..+ .+-...|..+.|+++|+++++-+. -++++||++..+
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9999999421 111111 112346788899999999888764 489999998643
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=6.5e-05 Score=62.01 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=65.1
Q ss_pred eeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccccee-EEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL-CLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
+.-+. |+|... .+|.+..+|.|-+.-+. -+.+.++.-|...++ +++|.|||+.||.|=.||+|++-|++++.
T Consensus 23 i~~~e-wnP~~d----LiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 23 IKRIE-WNPKMD----LIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred eEEEE-EcCccc----hhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 33444 999744 89999999999999887 677888887777777 99999999999999999999999999998
Q ss_pred eeee
Q 022870 286 VSHC 289 (291)
Q Consensus 286 ~~~~ 289 (291)
.++.
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 7765
No 340
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.87 E-value=0.0075 Score=47.28 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=112.2
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe----------CCCeEEEEECCCCCCCCCCccccccc
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGGLSSNPSLTIKTN 109 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~ 109 (291)
+.+.+.|.++++.+..+.... .-.+..+| +++.+++++ ..-.|.+||..+.....+ ..++..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~----~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E--I~iP~k 88 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF----LGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE--IEIPPK 88 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES----SEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE--EEETTS
T ss_pred ceEEEEECCCCcEEEEeeccc----CCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccce--EecCCc
Confidence 479999999999988887654 34566789 888888654 234699999998754331 111111
Q ss_pred eEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEe
Q 022870 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~ 188 (291)
+..... .+.. .+++.+++.+++.--+-..+|.|.|+..++.+..+
T Consensus 89 ~R~~~~----------------------------------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 89 PRAQVV----------------------------------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp -B--BS------------------------------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred chheec----------------------------------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence 000000 0000 56888998888766665678999999999988887
Q ss_pred cccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec----cccccce-eEEEeecC
Q 022870 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPV-LCLSIDES 263 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~----~~h~~~v-~~~~~~~~ 263 (291)
.. . -|.. ..|.++ + -+.+-|.||.+.-..+...++..... ..-.+++ ..-++...
T Consensus 135 ~~-------------P-GC~~---iyP~~~--~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 135 DT-------------P-GCWL---IYPSGN--R-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EG-------------T-SEEE---EEEEET--T-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred cC-------------C-CEEE---EEecCC--C-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 73 1 2222 234422 1 57788889999999998657665321 1112222 23334444
Q ss_pred CCeeEEecCCCeEEEEEcCCCc
Q 022870 264 CNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 264 ~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
+..++--+.+|.|+--|+....
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSS
T ss_pred CCeEEEEecCCEEEEEeccCCc
Confidence 4444446788888888877654
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0099 Score=48.58 Aligned_cols=206 Identities=14% Similarity=0.090 Sum_probs=127.7
Q ss_pred eEEEEcCCCCEE-EEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC---CCeEEEEECCCCC
Q 022870 22 TDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWDIENGG 97 (291)
Q Consensus 22 ~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~ 97 (291)
..++.++.+..+ ++...++.|.+.|..+.+.......... -..++++| ++..++.+.. ++++.+.|..+.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~---P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG---PVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccC---CceEEECC--CCCEEEEEecccCCceEEEEeCCCCe
Confidence 457778877744 4455568999999887777776654432 57999999 8877776554 6788888887776
Q ss_pred CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE
Q 022870 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (291)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w 177 (291)
... ....... + ..++++|+|..++++. ..++.|.+.
T Consensus 152 ~~~----~~~vG~~------P---------------------------------~~~a~~p~g~~vyv~~-~~~~~v~vi 187 (381)
T COG3391 152 VTA----TIPVGNT------P---------------------------------TGVAVDPDGNKVYVTN-SDDNTVSVI 187 (381)
T ss_pred EEE----EEecCCC------c---------------------------------ceEEECCCCCeEEEEe-cCCCeEEEE
Confidence 533 1111100 0 0066999998777644 558999999
Q ss_pred eCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCC--CcEEEEEccCCCCceee-ccccccc
Q 022870 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--GSILVWDIRNPGIPLTA-MKVHLEP 254 (291)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~d--g~i~vwd~~~~~~~~~~-~~~h~~~ 254 (291)
|........ -.. .-..........+. +.|+ |....++-..+ +.+...|..+ +..... ...-...
T Consensus 188 ~~~~~~v~~-~~~-------~~~~~~~~~P~~i~-v~~~---g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~ 254 (381)
T COG3391 188 DTSGNSVVR-GSV-------GSLVGVGTGPAGIA-VDPD---GNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGA 254 (381)
T ss_pred eCCCcceec-ccc-------ccccccCCCCceEE-ECCC---CCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCC
Confidence 977665543 110 00000111223343 8888 43233333333 6899999887 444443 2221114
Q ss_pred eeEEEeecCCCeeEEecC-CCeEEEEEcCCCceeee
Q 022870 255 VLCLSIDESCNGGISGGA-DQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 255 v~~~~~~~~~~~l~s~s~-dg~i~vw~~~~~~~~~~ 289 (291)
...+..+|+|..+..... .+.+.+-|..+.++...
T Consensus 255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 667888999998877743 48899988888766543
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0013 Score=55.70 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=39.3
Q ss_pred CCcEEEEEccC----CCCceeeccccccceeEEEeecCCCeeEEec-CCCeEEEEEcCCCc
Q 022870 230 DGSILVWDIRN----PGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHST 285 (291)
Q Consensus 230 dg~i~vwd~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~ 285 (291)
++.|.+.|.++ ....+..+. -......+.++|||++++.++ .++++.|.|+++.+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 35688888775 223333333 245678999999999986555 58999999998855
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=5.2e-05 Score=64.90 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=81.5
Q ss_pred cccCCCCCcEEEEe--cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCC
Q 022870 154 DDVPAEGPKYMAVA--GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (291)
Q Consensus 154 ~~~~~~~~~~~~~~--g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg 231 (291)
.+|+|..+.+.+++ -...|+|.|| ..+|++-..... .....+++ |+|..- .|+.|-+-|
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-------------P~hatSLC-WHpe~~----vLa~gwe~g 81 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-------------PVHATSLC-WHPEEF----VLAQGWEMG 81 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-------------ceehhhhc-cChHHH----HHhhccccc
Confidence 56899987655432 2345788888 455664433331 12234465 999732 788899999
Q ss_pred cEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 232 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.+.+|...+ .+.......|..+|..+.|+++|..|+++..-|.+.+|....
T Consensus 82 ~~~v~~~~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 82 VSDVQKTNT-TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeEEEecCC-ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 999999886 555555667999999999999999999999999999998873
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.85 E-value=0.0056 Score=48.84 Aligned_cols=184 Identities=10% Similarity=0.098 Sum_probs=104.3
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCC-----CCeEEEEeC----------CCeEEEEECCCCCCCCCCcc
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIG-----LNKVISQGR----------DGTVKCWDIENGGLSSNPSL 104 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~ 104 (291)
..|++.|..+.+.+.++..... +.+.+++.....+ ..+|+.|.. .|.|.++++.........+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4689999888888887776654 4566665543212 356666543 28899999987410000000
Q ss_pred ccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc-
Q 022870 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE- 183 (291)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~- 183 (291)
.+......... .++.+-+.+++++.| +.|.+|++...+
T Consensus 81 ~i~~~~~~g~V--------------------------------------~ai~~~~~~lv~~~g---~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 81 LIHSTEVKGPV--------------------------------------TAICSFNGRLVVAVG---NKLYVYDLDNSKT 119 (321)
T ss_dssp EEEEEEESS-E--------------------------------------EEEEEETTEEEEEET---TEEEEEEEETTSS
T ss_pred EEEEEeecCcc--------------------------------------eEhhhhCCEEEEeec---CEEEEEEccCccc
Confidence 11100000000 112233455665443 689999998877
Q ss_pred eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc--cccceeEEEee
Q 022870 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV--HLEPVLCLSID 261 (291)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~~ 261 (291)
....-.. + ....+.++. ...+ ++++|.....+.++..+.....+..+.. ....++++.+-
T Consensus 120 l~~~~~~--------~---~~~~i~sl~-~~~~------~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 120 LLKKAFY--------D---SPFYITSLS-VFKN------YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp EEEEEEE------------BSSSEEEEE-EETT------EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred chhhhee--------c---ceEEEEEEe-cccc------EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 3332221 1 122556665 3322 8999998888888866542332333322 24568888886
Q ss_pred cCCCeeEEecCCCeEEEEEcCC
Q 022870 262 ESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 262 ~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
+++..++.+..+|.+.++..+.
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-S
T ss_pred cCCcEEEEEcCCCeEEEEEECC
Confidence 5556899999999999998874
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.84 E-value=0.0019 Score=41.59 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=62.5
Q ss_pred eEEEEEeecCC--CCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870 65 IVSVATGPSIG--LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (291)
Q Consensus 65 v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
|.++++..... .+.|++|+.|..|++|+-+.- +..+........
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~------~~Ei~e~~~v~~---------------------------- 47 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI------VAEITETDKVTS---------------------------- 47 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE------EEEEecccceEE----------------------------
Confidence 67777766422 268999999999999986642 112222111111
Q ss_pred cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 222 (291)
++-... .. ++ -+-.+|+|-+|+-. +.+...+. ...++++..|..++ +|..
T Consensus 48 -----------L~~~~~-~~-F~-Y~l~NGTVGvY~~~--~RlWRiKS-------------K~~~~~~~~~D~~g-dG~~ 97 (111)
T PF14783_consen 48 -----------LCSLGG-GR-FA-YALANGTVGVYDRS--QRLWRIKS-------------KNQVTSMAFYDING-DGVP 97 (111)
T ss_pred -----------EEEcCC-CE-EE-EEecCCEEEEEeCc--ceeeeecc-------------CCCeEEEEEEcCCC-CCce
Confidence 111112 22 33 35568999999763 23344442 22355555455553 4666
Q ss_pred EEEeecCCCcEEE
Q 022870 223 NVLAGYEDGSILV 235 (291)
Q Consensus 223 ~l~~g~~dg~i~v 235 (291)
.|++|-.+|.|-+
T Consensus 98 eLI~GwsnGkve~ 110 (111)
T PF14783_consen 98 ELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEecCCeEEe
Confidence 8999999998754
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.80 E-value=0.00076 Score=58.95 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=63.5
Q ss_pred cCCcCeEEEEeCCCcc-eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 168 GEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
|-.+..+..||+|-.. .+..-. .+.-.......+++ -..+ | +||+|+.+|.||+||--. .+...
T Consensus 548 Gls~n~lfriDpR~~~~k~v~~~--------~k~Y~~~~~Fs~~a-Tt~~---G--~iavgs~~G~IRLyd~~g-~~AKT 612 (794)
T PF08553_consen 548 GLSDNSLFRIDPRLSGNKLVDSQ--------SKQYSSKNNFSCFA-TTED---G--YIAVGSNKGDIRLYDRLG-KRAKT 612 (794)
T ss_pred EECCCceEEeccCCCCCceeecc--------ccccccCCCceEEE-ecCC---c--eEEEEeCCCcEEeecccc-hhhhh
Confidence 4447889999999643 121111 22211122222322 3333 5 799999999999999532 33334
Q ss_pred eccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
.+.+-..+|..|..+.||++|++.+ +..+.+++.
T Consensus 613 ~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 613 ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 4566678999999999999987776 556777775
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.79 E-value=0.017 Score=48.93 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=44.8
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe---------CCCeEEEEECCCCCCCC
Q 022870 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG---------RDGTVKCWDIENGGLSS 100 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~ 100 (291)
..++.++.+|.|.-+|.++|+.+..+........-..+.-+|...+..++.++ .+|.|..+|..+++...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57888889999999999999998877654320001112222221224555554 36788999999887765
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.75 E-value=0.019 Score=48.69 Aligned_cols=69 Identities=17% Similarity=0.059 Sum_probs=47.0
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCC----cceEEEEEeecCCC-CeEEEEeCCCeEEEEECCCCCCCC
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGGLSS 100 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 100 (291)
+..++.++.++.|.-.|..+++.+..++..... ..+..-...- .+ ..++.++.++.|.-+|.++++...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEee
Confidence 446777888999999999999888776543220 0011100011 22 688888899999999999998765
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.02 Score=47.29 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=39.8
Q ss_pred eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
.|.||+. .|+.+.++.-.. +.|.++.|.. + ..|+....||.+++||+....
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--~~iv~~~wt~--~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--GRIVGMGWTD--D-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--CCEEEEEECC--C-CeEEEEEcCCEEEEEeCCCce
Confidence 5899985 577777766555 4599999988 5 677788899999999987443
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0071 Score=51.21 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=58.1
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE---EEEeeec-CCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV---SSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
-.+.+..+..+++..++|.|+..|.|.++.++.+... ..-..+. +...|++++|++ ++..+++|...|.|.+-.
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEE
Confidence 4455666778888888899999999999988764321 1111111 125599999999 999999999999999988
Q ss_pred CCC
Q 022870 93 IEN 95 (291)
Q Consensus 93 ~~~ 95 (291)
+..
T Consensus 153 L~s 155 (726)
T KOG3621|consen 153 LDS 155 (726)
T ss_pred ech
Confidence 877
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=0.002 Score=47.92 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=81.3
Q ss_pred ccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEE
Q 022870 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (291)
Q Consensus 155 ~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~ 234 (291)
...++.+.+++ .|+..+.+.--|..+++....-.. + .+-.+.++ .- |. +++.|+..|.++
T Consensus 17 VV~~dskT~v~-igSHs~~~~avd~~sG~~~We~il-------g----~RiE~sa~--vv-----gd-fVV~GCy~g~lY 76 (354)
T KOG4649|consen 17 VVCNDSKTLVV-IGSHSGIVIAVDPQSGNLIWEAIL-------G----VRIECSAI--VV-----GD-FVVLGCYSGGLY 76 (354)
T ss_pred EEecCCceEEE-EecCCceEEEecCCCCcEEeehhh-------C----ceeeeeeE--EE-----CC-EEEEEEccCcEE
Confidence 34556655555 688889999999999987655432 1 11112222 21 33 899999999999
Q ss_pred EEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 235 vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
+.+.++ +.....+..-...=.....++++..+..|+.|+..+.-|..+...+++
T Consensus 77 fl~~~t-Gs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 77 FLCVKT-GSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEecc-hhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 999999 777776665333223345588888999999999999999999887765
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.66 E-value=0.00021 Score=38.37 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.0
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 52 (291)
...|.+++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00044 Score=58.07 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=77.5
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
.+++..++++.+ |+.-|.+++|+-..++.. .++.. + ..+..... +.+++ .+ ++|+|+..|.|
T Consensus 39 Tc~dst~~~l~~--GsS~G~lyl~~R~~~~~~-~~~~~------~----~~~~~~~~-~vs~~---e~-lvAagt~~g~V 100 (726)
T KOG3621|consen 39 TCVDATEEYLAM--GSSAGSVYLYNRHTGEMR-KLKNE------G----ATGITCVR-SVSSV---EY-LVAAGTASGRV 100 (726)
T ss_pred EEeecCCceEEE--ecccceEEEEecCchhhh-ccccc------C----ccceEEEE-Eecch---hH-hhhhhcCCceE
Confidence 456667776653 445699999987766543 22210 1 22333333 37776 33 88999999999
Q ss_pred EEEEccCCCCceee----c-cccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 234 LVWDIRNPGIPLTA----M-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 234 ~vwd~~~~~~~~~~----~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.++-+.....+-.. + +.|...|++++|++++..|.+|...|+|..-.+++
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 99988762222111 1 23678999999999999999999999999988877
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.61 E-value=0.03 Score=46.52 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=104.6
Q ss_pred ceeEEEEcCCCCEEEEe-cC----CCeEEEEeCCCCeEEEEE-eeecCCcceEEEEEeecCCCCeEEEEeCCC-------
Q 022870 20 SVTDVCFHQTKPILFAG-TT----GGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDG------- 86 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~-~~----dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------- 86 (291)
.+...+++|+|+++|-+ +. ...+++.|+++++.+... .... ...+.|.+ +++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~--d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSD--DGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECT--TSSEEEEEECSTTTSS-CC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc----cceEEEeC--CCCEEEEEEeCcccccccC
Confidence 34467899999988754 22 245999999999776532 2221 23499999 877666444322
Q ss_pred ----eEEEEECCCCCCCCCCccccccceE-EEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCC
Q 022870 87 ----TVKCWDIENGGLSSNPSLTIKTNSY-HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (291)
Q Consensus 87 ----~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
.|+.|++.+.......++....... ... +..+++++
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~---------------------------------------~~~s~d~~ 239 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVS---------------------------------------VSRSKDGR 239 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEE---------------------------------------EEE-TTSS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEE---------------------------------------EEecCccc
Confidence 3777777665432111222222111 111 34778888
Q ss_pred cEEEEecCCc--CeEEEEeCCCc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee--cCCCcE
Q 022870 162 KYMAVAGEQL--SEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG--YEDGSI 233 (291)
Q Consensus 162 ~~~~~~g~~d--~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g--~~dg~i 233 (291)
.+++.+.+.. ..+.+.|+..+ .....+.. . ..+....+. .. . +..++.+. ..++.|
T Consensus 240 ~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--------~---~~~~~~~v~-~~-~---~~~yi~Tn~~a~~~~l 303 (414)
T PF02897_consen 240 YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--------R---EDGVEYYVD-HH-G---DRLYILTNDDAPNGRL 303 (414)
T ss_dssp EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--------S---SSS-EEEEE-EE-T---TEEEEEE-TT-TT-EE
T ss_pred EEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--------C---CCceEEEEE-cc-C---CEEEEeeCCCCCCcEE
Confidence 8877554433 46888898874 22233321 1 112222222 22 1 33244443 235678
Q ss_pred EEEEccCCCC--ceeecccccc--ceeEEEeecCCCeeEEecCCC--eEEEEEcC
Q 022870 234 LVWDIRNPGI--PLTAMKVHLE--PVLCLSIDESCNGGISGGADQ--KIVLYNLD 282 (291)
Q Consensus 234 ~vwd~~~~~~--~~~~~~~h~~--~v~~~~~~~~~~~l~s~s~dg--~i~vw~~~ 282 (291)
...++.+... ....+..|.. .+..+....+ .+++..-.++ .|+++++.
T Consensus 304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT
T ss_pred EEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECC
Confidence 8888887332 1224455555 4555555544 2344444454 58889988
No 355
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.02 Score=43.65 Aligned_cols=217 Identities=12% Similarity=0.092 Sum_probs=122.4
Q ss_pred ecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEEC
Q 022870 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 14 l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~ 93 (291)
+.|-+..|.++.|+|+.+.|++......-.||=..+|+.++++....- .--..+.|.. ++.+.++--.++.+.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig--~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIG--GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEec--CCEEEEEehhcceEEEEEE
Confidence 345556699999999988888887777777887778999988764321 2245777777 6666667777889998888
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCe
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 173 (291)
....... ..... .+...... ..-.+..+++|+|.+..++++ -. -.-
T Consensus 158 d~~t~~~----~~~~~-----~i~L~~~~-----------------------k~N~GfEGlA~d~~~~~l~~a-KE-r~P 203 (316)
T COG3204 158 DADTTVI----SAKVQ-----KIPLGTTN-----------------------KKNKGFEGLAWDPVDHRLFVA-KE-RNP 203 (316)
T ss_pred cCCccEE----eccce-----EEeccccC-----------------------CCCcCceeeecCCCCceEEEE-Ec-cCC
Confidence 7653211 11111 01000000 001111228899999888864 33 345
Q ss_pred EEEEeCCCcceeeEecccccCCCCCCCCCc---ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccc
Q 022870 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (291)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 250 (291)
+.||.+............. .+.... -..+.++. |++. .+. .++-+.+++.+.-.|.. +.++..+..
T Consensus 204 ~~I~~~~~~~~~l~~~~~~-----~~~~~~~~f~~DvSgl~-~~~~--~~~-LLVLS~ESr~l~Evd~~--G~~~~~lsL 272 (316)
T COG3204 204 IGIFEVTQSPSSLSVHASL-----DPTADRDLFVLDVSGLE-FNAI--TNS-LLVLSDESRRLLEVDLS--GEVIELLSL 272 (316)
T ss_pred cEEEEEecCCccccccccc-----CcccccceEeeccccce-ecCC--CCc-EEEEecCCceEEEEecC--CCeeeeEEe
Confidence 6666655332111111000 111110 11233444 7665 244 88888899999888877 454444332
Q ss_pred cc---------cceeEEEeecCCCeeEEecCCCeEEEE
Q 022870 251 HL---------EPVLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 251 h~---------~~v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
+. ..--+++.+.+|. |...|+-+..+.+
T Consensus 273 ~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F 309 (316)
T COG3204 273 TKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF 309 (316)
T ss_pred ccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence 21 1345677777776 4444454444443
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.52 E-value=0.047 Score=46.71 Aligned_cols=211 Identities=12% Similarity=0.074 Sum_probs=115.6
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceE---E-------EEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV---S-------VATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---~-------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 99 (291)
+..++.++.++.|.-.|..+|+.+..+..... ..+. + +++. +..++.++.|+.|.-.|.++++..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~----~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALY----DGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEE----CCEEEEEcCCCEEEEEECCCCCEE
Confidence 44777788889999999999998887654221 1111 1 1222 257778888999999999999876
Q ss_pred CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC----CcCeEE
Q 022870 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE----QLSEVE 175 (291)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~ 175 (291)
.+... ...... ......+ + + .+ ..+++.+++ .+|.|.
T Consensus 144 W~~~~--~~~~~~---~~~tssP-------------------------------~-v-~~-g~Vivg~~~~~~~~~G~v~ 184 (527)
T TIGR03075 144 WSKKN--GDYKAG---YTITAAP-------------------------------L-V-VK-GKVITGISGGEFGVRGYVT 184 (527)
T ss_pred eeccc--cccccc---ccccCCc-------------------------------E-E-EC-CEEEEeecccccCCCcEEE
Confidence 52111 000000 0000000 0 0 12 234432221 268899
Q ss_pred EEeCCCcceeeEecccccCCC------------CCCC-------CCcceeeeeEEEecCCCCCCceEEEeec---CCC--
Q 022870 176 IWDLNTAERCTRLHQNSCGGS------------PNFS-------SKGRGMCMAVQAYLPSKSQGFVNVLAGY---EDG-- 231 (291)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~p~~~~g~~~l~~g~---~dg-- 231 (291)
-+|.++++.+-++........ .+.. ....+.++..-++.|. .+..|+-+|. .++
T Consensus 185 AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~--~~lvy~~tGnp~p~~~~~ 262 (527)
T TIGR03075 185 AYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPE--TNLIYFGTGNPSPWNSHL 262 (527)
T ss_pred EEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCC--CCeEEEeCCCCCCCCCCC
Confidence 999999998877653211100 0000 0001122211125544 2332333332 112
Q ss_pred ---------cEEEEEccCCCCceeeccccccceeE---------EEeecCCC---eeEEecCCCeEEEEEcCCCcee
Q 022870 232 ---------SILVWDIRNPGIPLTAMKVHLEPVLC---------LSIDESCN---GGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 232 ---------~i~vwd~~~~~~~~~~~~~h~~~v~~---------~~~~~~~~---~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
.|.-.|+++ ++....++.....++. +....+|+ .++.+..+|.+++.|.++++++
T Consensus 263 r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 263 RPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 677888888 7777766642222211 12224565 7889999999999999999986
No 357
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.51 E-value=0.035 Score=45.05 Aligned_cols=219 Identities=10% Similarity=0.049 Sum_probs=94.5
Q ss_pred CCCCCCceEEecC---Cc----cceeEEEEcCCCCEEEEec--C----CCeEEEEeCCCCeEEEEEeeecC-CcceEEEE
Q 022870 4 RPPPPDPVAVLRG---HR----ASVTDVCFHQTKPILFAGT--T----GGELRIWDTVQHRTVSSSWVHSA-AHGIVSVA 69 (291)
Q Consensus 4 ~~~~~~~~~~l~~---h~----~~v~~l~~~~~~~~l~s~~--~----dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~ 69 (291)
+|..++..++++. +. ..-..+..-|+|..++|+- . -|-+.+.|-++.+.....+.... ...-+.+.
T Consensus 108 dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw 187 (461)
T PF05694_consen 108 DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFW 187 (461)
T ss_dssp -TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EE
T ss_pred CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeE
Confidence 5666677777774 22 2233344557898887752 2 25688889887777777665332 22356777
Q ss_pred EeecCCCCeEEEEeC--------------------CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870 70 TGPSIGLNKVISQGR--------------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (291)
Q Consensus 70 ~~~~~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (291)
|.| ..+.++|... -.++.+||+.+.+.++ .+.+.........+.+
T Consensus 188 ~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q--~idLg~~g~~pLEvRf----------- 252 (461)
T PF05694_consen 188 YQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ--TIDLGEEGQMPLEVRF----------- 252 (461)
T ss_dssp EET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE--EEES-TTEEEEEEEEE-----------
T ss_pred EcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee--EEecCCCCCceEEEEe-----------
Confidence 888 6677777643 3579999999887644 2233222222222222
Q ss_pred CCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEE-eCCCcc----eeeEecccccCCCCCCC----
Q 022870 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW-DLNTAE----RCTRLHQNSCGGSPNFS---- 200 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~w-d~~~~~----~~~~~~~~~~~~~~~~~---- 200 (291)
...|+..+-++.+.- ..+|..| ..+.++ .+..+....-. +-.
T Consensus 253 -------------------------lH~P~~~~gFvg~aL-ss~i~~~~k~~~g~W~a~kVi~ip~~~v~---~~~lp~m 303 (461)
T PF05694_consen 253 -------------------------LHDPDANYGFVGCAL-SSSIWRFYKDDDGEWAAEKVIDIPAKKVE---GWILPEM 303 (461)
T ss_dssp --------------------------SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE-----SS---GG
T ss_pred -------------------------cCCCCccceEEEEec-cceEEEEEEcCCCCeeeeEEEECCCcccC---ccccccc
Confidence 245665555554443 3444444 323332 12222210000 000
Q ss_pred ----CCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc---c-------c--------ccceeEE
Q 022870 201 ----SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---V-------H--------LEPVLCL 258 (291)
Q Consensus 201 ----~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~-------h--------~~~v~~~ 258 (291)
......++.+. .+.| ++.+.+++-..|.|+.||+.++.++...-+ + | .+...-|
T Consensus 304 l~~~~~~P~LitDI~-iSlD---DrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 304 LKPFGAVPPLITDIL-ISLD---DRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp GGGG-EE------EE-E-TT---S-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccCCCceEeEE-EccC---CCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 00135677776 8887 553556667899999999998766543321 1 0 1123456
Q ss_pred EeecCCCeeEEe
Q 022870 259 SIDESCNGGISG 270 (291)
Q Consensus 259 ~~~~~~~~l~s~ 270 (291)
..|-||+.|...
T Consensus 380 qlS~DGkRlYvT 391 (461)
T PF05694_consen 380 QLSLDGKRLYVT 391 (461)
T ss_dssp EE-TTSSEEEEE
T ss_pred EEccCCeEEEEE
Confidence 677788877543
No 358
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.44 E-value=0.039 Score=49.99 Aligned_cols=162 Identities=10% Similarity=0.014 Sum_probs=83.6
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeC----CC-------------------CeEEEEEeeecC------------
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDT----VQ-------------------HRTVSSSWVHSA------------ 61 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~----~~-------------------~~~~~~~~~~~~------------ 61 (291)
-...|.+++|+||+..++..+.++++.+-+. -. |+....+++..+
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 3578999999999999998888888766442 11 111112221100
Q ss_pred -------CcceEEEEEeecCCCCeEEEE-----eCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccC
Q 022870 62 -------AHGIVSVATGPSIGLNKVISQ-----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129 (291)
Q Consensus 62 -------~~~v~~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (291)
.+.=++|.|-- ||.++++. .....|++||-+ +.+.. .-.-.....+...+.+.++-+...-..
T Consensus 188 ~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~ 262 (1265)
T KOG1920|consen 188 ALEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTRKIRVYDRE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCK 262 (1265)
T ss_pred cccchhhccCCceEEEcc--CCcEEEEEEEeccCCceeEEEeccc-chhhc--ccCcccccccceeecCCCCeEeeeeec
Confidence 01124588988 98888873 223789999987 43321 111112222333344433222222222
Q ss_pred CCCceeeecccCccccc------cCCCC--CCcccCCCCCcEEEEecCCcCe-EEEEeCCCcc
Q 022870 130 NEPKDCYEREVGETVDT------DSLCD--SKDDVPAEGPKYMAVAGEQLSE-VEIWDLNTAE 183 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~g~~d~~-i~~wd~~~~~ 183 (291)
.....+.-+........ ..... ..++|+.++.-+.+.+....+. |++|-+.+..
T Consensus 263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22222332322221111 11111 1189999987665544444444 9999987654
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.009 Score=51.82 Aligned_cols=117 Identities=15% Similarity=0.270 Sum_probs=64.8
Q ss_pred CCCCcEEEEecCCcC----eEEEEeCCCc------ceeeEecccccCCCCCCCCCc-ceeeeeEEEecCCCCCCceEEEe
Q 022870 158 AEGPKYMAVAGEQLS----EVEIWDLNTA------ERCTRLHQNSCGGSPNFSSKG-RGMCMAVQAYLPSKSQGFVNVLA 226 (291)
Q Consensus 158 ~~~~~~~~~~g~~d~----~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~g~~~l~~ 226 (291)
-++..++++.|..++ .+++||++.. +++...... .+..+. ..+..+++ .+.+-. .+|+
T Consensus 74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~------~~~np~~~~p~s~l~-Vs~~l~----~Iv~ 142 (933)
T KOG2114|consen 74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF------TIKNPTNPSPASSLA-VSEDLK----TIVC 142 (933)
T ss_pred ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee------ccCCCCCCCcceEEE-EEcccc----EEEE
Confidence 344456666666555 6999998743 222111100 222221 22333333 555422 8999
Q ss_pred ecCCCcEEEEEc---cCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 227 GYEDGSILVWDI---RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 227 g~~dg~i~vwd~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
|-.||.|..+.- +..+....-......+|+++++..++..++-...-..|.+|.+....
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 999999999853 22122111122236799999996666652222234578899888544
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.43 E-value=0.036 Score=43.13 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=113.6
Q ss_pred CCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc--c-
Q 022870 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS--L- 104 (291)
Q Consensus 28 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~- 104 (291)
..++.|+.|+.+| +.+++.........+. +. .+|..+...| +-+.|++-+ |+.+.++++.......... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~--~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KL--SSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ec--ceEEEEEEec--ccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 3567899999998 8999983332222222 22 2399999999 666666655 4999999988654332100 0
Q ss_pred --------ccccceEEEEEee---cccCccceeccCCCCceeeecccCc----cccc--cCCCCCC-cccCCCCCcEEEE
Q 022870 105 --------TIKTNSYHFCKLS---LVKEPYANAKQANEPKDCYEREVGE----TVDT--DSLCDSK-DDVPAEGPKYMAV 166 (291)
Q Consensus 105 --------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~-~~~~~~~~~~~~~ 166 (291)
.+.. ......+. .................++...... .... .++.... ++|. ++.+++
T Consensus 78 ~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v- 153 (275)
T PF00780_consen 78 PKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICV- 153 (275)
T ss_pred cccccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEE-
Confidence 0100 00111111 1111111122222233334333311 1111 1111111 5666 334443
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCcee
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~ 246 (291)
|. .+...+.|+.++.....+............. .......+.... + ++ +|++- |..-.+.|.. +++.+
T Consensus 154 -~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~e-~Ll~~--~~~g~fv~~~--G~~~r 221 (275)
T PF00780_consen 154 -GT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRN-SSSKPLGIFQLS-D---NE-FLLCY--DNIGVFVNKN--GEPSR 221 (275)
T ss_pred -Ee-CCceEEEecCCCCceEEeCccCCcchhhhcc-cCCCceEEEEeC-C---ce-EEEEe--cceEEEEcCC--CCcCc
Confidence 33 3568899999776544332110000000000 011112221122 1 22 55543 3334444544 44443
Q ss_pred --eccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 247 --AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 247 --~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.+.- ...+.++++... +|+..+.+ .|.||++.++++++++
T Consensus 222 ~~~i~W-~~~p~~~~~~~p--yli~~~~~-~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 222 KSTIQW-SSAPQSVAYSSP--YLIAFSSN-SIEVRSLETGELVQTI 263 (275)
T ss_pred ccEEEc-CCchhEEEEECC--EEEEECCC-EEEEEECcCCcEEEEE
Confidence 2332 346677777554 77777654 5999999999999876
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.31 E-value=0.088 Score=45.09 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=42.7
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe------CCCeEEEEECCCCCCCC
Q 022870 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG------RDGTVKCWDIENGGLSS 100 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~ 100 (291)
..++.++.|+.|.-.|.++|+.+......... .-..+.-+|...+..++.+. .+|.|.-+|.++++.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~-~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYK-AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccccccc-ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 46777888999999999999988776532110 00111111211124555543 26899999999988765
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.29 E-value=0.046 Score=41.49 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=99.9
Q ss_pred eeEEEEcCCCCEEEEecCCC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 21 VTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
...+.|..+|.++-+.+.-| .|+.+|+.+++.......... -.--.++... + ....-.=.++...+||..+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d-~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D-KLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T-EEEEEESSSSEEEEEETTTTEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C-EEEEEEecCCeEEEEccccceE
Confidence 34588877887777776655 699999999988776654432 2233444444 3 4444455678999999987654
Q ss_pred CCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEe
Q 022870 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (291)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd 178 (291)
.. .+...... --...++..++.+-|+ ..++.+|
T Consensus 123 ~~--~~~y~~EG-------------------------------------------WGLt~dg~~Li~SDGS--~~L~~~d 155 (264)
T PF05096_consen 123 IG--TFPYPGEG-------------------------------------------WGLTSDGKRLIMSDGS--SRLYFLD 155 (264)
T ss_dssp EE--EEE-SSS---------------------------------------------EEEECSSCEEEE-SS--SEEEEE-
T ss_pred EE--EEecCCcc-------------------------------------------eEEEcCCCEEEEECCc--cceEEEC
Confidence 32 11111111 1123567788876665 6899999
Q ss_pred CCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecc---------
Q 022870 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--------- 249 (291)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------- 249 (291)
..+.+....+.... ....-....-+. |. +|. ..|=.-....|...|..+ ++.+..+.
T Consensus 156 P~~f~~~~~i~V~~-------~g~pv~~LNELE-~i----~G~-IyANVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~ 221 (264)
T PF05096_consen 156 PETFKEVRTIQVTD-------NGRPVSNLNELE-YI----NGK-IYANVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVG 221 (264)
T ss_dssp TTT-SEEEEEE-EE-------TTEE---EEEEE-EE----TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHT
T ss_pred CcccceEEEEEEEE-------CCEECCCcEeEE-EE----cCE-EEEEeCCCCeEEEEeCCC-CeEEEEEEhhHhhhccc
Confidence 98887766665311 011111222333 32 132 333344455666666666 55443321
Q ss_pred ------ccccceeEEEeecCCCee-EEe
Q 022870 250 ------VHLEPVLCLSIDESCNGG-ISG 270 (291)
Q Consensus 250 ------~h~~~v~~~~~~~~~~~l-~s~ 270 (291)
...+..++|||+|....| +||
T Consensus 222 ~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 222 RDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp STTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 113568999998766555 555
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.29 E-value=0.0012 Score=35.51 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.8
Q ss_pred ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 252 ~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
...|..++|+|+..+||.++.||.|.++.++..+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4569999999999999999999999999995443
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.26 E-value=0.074 Score=43.11 Aligned_cols=247 Identities=12% Similarity=0.051 Sum_probs=114.8
Q ss_pred eEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecC---------------CcceEEEEEeecCC
Q 022870 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---------------AHGIVSVATGPSIG 75 (291)
Q Consensus 11 ~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~ 75 (291)
+..+......+....|+|+|+.++-.. ++.|.+++..++...+.-..... -+.-..+.|+| |
T Consensus 35 ~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d 111 (353)
T PF00930_consen 35 ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--D 111 (353)
T ss_dssp EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--T
T ss_pred eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--C
Confidence 333443356789999999999988775 57899999877754432111100 01135788999 9
Q ss_pred CCeEEEEeC-CCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCC----C
Q 022870 76 LNKVISQGR-DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL----C 150 (291)
Q Consensus 76 ~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 150 (291)
+++|+.... +..|..+.+........ .-...........+.+. ....+.++++...+....... .
T Consensus 112 ~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YPk~G~~n-----p~v~l~v~~~~~~~~~~~~~~~~~~~ 181 (353)
T PF00930_consen 112 SKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYPKAGDPN-----PRVSLFVVDLASGKTTELDPPNSLNP 181 (353)
T ss_dssp SSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHT
T ss_pred CCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccCCCCCcC-----CceEEEEEECCCCcEEEeeeccccCC
Confidence 998886554 44455554432111000 00000111111111110 011122233333322111111 0
Q ss_pred CCC----cccCCCCCcEEEEecCCc---CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEec-CCCCCCce
Q 022870 151 DSK----DDVPAEGPKYMAVAGEQL---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL-PSKSQGFV 222 (291)
Q Consensus 151 ~~~----~~~~~~~~~~~~~~g~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~ 222 (291)
... +.|.+++..+++....++ ..+.++|..+++........ ..... ....... |. ++ +..
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-------~~~Wv-~~~~~~~-~~~~~---~~~ 249 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-------SDGWV-DVYDPPH-FLGPD---GNE 249 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-------SSSSS-SSSSEEE-E-TTT---SSE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-------CCcce-eeecccc-cccCC---CCE
Confidence 111 778888875555443332 33667788776654444321 11111 1111122 44 54 222
Q ss_pred EEEeecCCCcEEEEEccCCCCceeeccccccceeE-EEeecCCCee-EEecCC----CeEEEEEcC
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-LSIDESCNGG-ISGGAD----QKIVLYNLD 282 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l-~s~s~d----g~i~vw~~~ 282 (291)
+|.....+|.-+||-+...+.....+....-.|.. +.|+++++.| .++..+ ..|..-+++
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 66666688865555554434555566655667766 5668876655 355543 245555555
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.24 E-value=0.037 Score=45.98 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=37.2
Q ss_pred EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
.|...+ ++.|.+||..+ ++.+..+.. .+|..+.|++++.+++-.+.+ .+.+++.+..
T Consensus 119 LL~~~~-~~~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 119 LLGVKS-SDFICFYDWET-GKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp SEEEEE-TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEEEEC-CCCEEEEEhhH-cceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 455544 44899999998 888888874 348999999999999888755 6788776543
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.025 Score=46.66 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=62.9
Q ss_pred cCCcCeEEEEeCCCcce--eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCce
Q 022870 168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~ 245 (291)
|-.|..|.-||+|-... +...+ +|.-.....-. ||...++ | +|++|+.+|.|++||. .+.+.-
T Consensus 400 GLs~n~vfriDpRv~~~~kl~~~q--------~kqy~~k~nFs---c~aTT~s-G--~IvvgS~~GdIRLYdr-i~~~AK 464 (644)
T KOG2395|consen 400 GLSDNSVFRIDPRVQGKNKLAVVQ--------SKQYSTKNNFS---CFATTES-G--YIVVGSLKGDIRLYDR-IGRRAK 464 (644)
T ss_pred eecCCceEEecccccCcceeeeee--------ccccccccccc---eeeecCC-c--eEEEeecCCcEEeehh-hhhhhh
Confidence 44578999999984332 11111 23221111111 2333322 5 8999999999999997 424444
Q ss_pred eeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
..+.+-..+|..+..+.+|++|++.+ +..+.+-++
T Consensus 465 TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 465 TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 56777788999999999999887665 556666554
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.073 Score=41.92 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=107.2
Q ss_pred EEcCCCC-EEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCc
Q 022870 25 CFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPS 103 (291)
Q Consensus 25 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 103 (291)
.|.++.. ++.+--..+.|.-|+..+++.. .+... ..+.++.... .+..|+++.. -+.+++.+++.... ..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p---~~~~~~~~~d--~~g~Lv~~~~--g~~~~~~~~~~~~t-~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP---GGFSSGALID--AGGRLIACEH--GVRLLDPDTGGKIT-LL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC---CCcccceeec--CCCeEEEEcc--ccEEEeccCCceeE-Ee
Confidence 4666555 5566677888999998766432 23323 2255555554 4455555443 36667775443311 00
Q ss_pred cccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEec---------CCcCeE
Q 022870 104 LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG---------EQLSEV 174 (291)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~d~~i 174 (291)
......... ..-+.....|+|...+-..+ ..-|.+
T Consensus 102 ~~~~~~~~~------------------------------------~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 102 AEPEDGLPL------------------------------------NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred ccccCCCCc------------------------------------CCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 000000000 00000335667654443222 112445
Q ss_pred EEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC-CC----C-ceeec
Q 022870 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG----I-PLTAM 248 (291)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~-~~----~-~~~~~ 248 (291)
+.+|. .+...+.+. .+ -.....++ |+|+ ++.++++=+..+.|+-|++.. .+ + ....+
T Consensus 146 yr~~p-~g~~~~l~~--------~~----~~~~NGla-~SpD---g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~ 208 (307)
T COG3386 146 YRVDP-DGGVVRLLD--------DD----LTIPNGLA-FSPD---GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF 208 (307)
T ss_pred EEEcC-CCCEEEeec--------Cc----EEecCceE-ECCC---CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc
Confidence 55554 344444443 22 22334454 9999 443555556668899988762 11 1 12223
Q ss_pred cccccceeEEEeecCCCeeEEecCCC-eEEEEEcCCCceeeee
Q 022870 249 KVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTVSHCV 290 (291)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~l~s~s~dg-~i~vw~~~~~~~~~~~ 290 (291)
....+..-.++.+.+|++-+++-.+| .|.+|+.+ ++++..+
T Consensus 209 ~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 209 DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 33456777889999999775555454 89999999 7777654
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0011 Score=58.62 Aligned_cols=68 Identities=15% Similarity=0.304 Sum_probs=54.5
Q ss_pred EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
.++.|++.|.+-..|++..-.+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 68999999999999988522222222223579999999999999999999999999999998887653
No 369
>PHA02713 hypothetical protein; Provisional
Probab=97.13 E-value=0.067 Score=46.20 Aligned_cols=63 Identities=8% Similarity=-0.042 Sum_probs=34.8
Q ss_pred CceEEEeecCC------CcEEEEEccC-CC-CceeeccccccceeEEEeecCCCeeEEecCCC--eEEEEEcCCCc
Q 022870 220 GFVNVLAGYED------GSILVWDIRN-PG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHST 285 (291)
Q Consensus 220 g~~~l~~g~~d------g~i~vwd~~~-~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg--~i~vw~~~~~~ 285 (291)
|+ +.+.|+.+ ..+..||..+ .. ..+..+.........+.+ +++..+.|+.|| .+..||..+.+
T Consensus 464 ~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 464 DD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 44 44555543 2467888875 21 222333322222222222 556788999888 77788877665
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.12 Score=42.31 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=110.3
Q ss_pred ceeEEEEcCCCCEEEEecC---CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEEECCC
Q 022870 20 SVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIEN 95 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~ 95 (291)
.-..+++++++..++.+.. ++++.+.|..+.+......... .| ..+++.| +|..++... .++.|.+.|...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~ 191 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG 191 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence 4567889998877766654 6899999988888888754433 34 8999999 988666554 788999999766
Q ss_pred CCCCC-CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecC-CcCe
Q 022870 96 GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSE 173 (291)
Q Consensus 96 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~ 173 (291)
....+ ......... .....+.++|+|.++.+.... .++.
T Consensus 192 ~~v~~~~~~~~~~~~---------------------------------------~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 192 NSVVRGSVGSLVGVG---------------------------------------TGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred cceeccccccccccC---------------------------------------CCCceEEECCCCCEEEEEeccCCCce
Confidence 54321 000000000 000016688999876654332 2368
Q ss_pred EEEEeCCCcceeeE-ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEee-cCCCcEEEEEccCCCCceeecccc
Q 022870 174 VEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRNPGIPLTAMKVH 251 (291)
Q Consensus 174 i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~h 251 (291)
+...|..++..... +.. + .. ....+. +.|+ |. ++.+. +..+.+.+.|..+ ..........
T Consensus 233 v~~id~~~~~v~~~~~~~-------~----~~-~~~~v~-~~p~---g~-~~yv~~~~~~~V~vid~~~-~~v~~~~~~~ 294 (381)
T COG3391 233 VLKIDTATGNVTATDLPV-------G----SG-APRGVA-VDPA---GK-AAYVANSQGGTVSVIDGAT-DRVVKTGPTG 294 (381)
T ss_pred EEEEeCCCceEEEecccc-------c----cC-CCCcee-ECCC---CC-EEEEEecCCCeEEEEeCCC-Cceeeeeccc
Confidence 99999988776554 221 0 11 233343 8888 44 55555 4458899999887 5555443322
Q ss_pred c---cceeEEEee
Q 022870 252 L---EPVLCLSID 261 (291)
Q Consensus 252 ~---~~v~~~~~~ 261 (291)
. ..+..+++.
T Consensus 295 ~~~~~~~~~~~~~ 307 (381)
T COG3391 295 NEALGEPVSIAIS 307 (381)
T ss_pred ccccccceeccce
Confidence 2 234455553
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.019 Score=43.50 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=74.7
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC----
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---- 229 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---- 229 (291)
++|+|.-+.-++.+---.-...++|....+.+.++.......+.+| + .|+|+ |+ +|++.-+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH-----G------vfs~d---G~-~LYATEndfd~ 137 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH-----G------VFSPD---GR-LLYATENDFDP 137 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc-----c------ccCCC---Cc-EEEeecCCCCC
Confidence 7788888777776544334578999999888777764322222222 1 39998 55 6655433
Q ss_pred -CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec
Q 022870 230 -DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (291)
Q Consensus 230 -dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 271 (291)
-|.|-|||.+...+.+.++..|.-....+.|.+||+.|+.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 378999999986788889999888889999999999887653
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0049 Score=54.74 Aligned_cols=73 Identities=23% Similarity=0.455 Sum_probs=56.2
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCCCeEEEEECC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~ 94 (291)
.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..+..+ .+.+-+.-.. ++..++++..-|. +|.+.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap--~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP--VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc--cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 578999999999999999999999999999999998888777643 4444333211 4456888887776 56543
No 373
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.81 E-value=0.044 Score=44.38 Aligned_cols=65 Identities=11% Similarity=0.103 Sum_probs=45.4
Q ss_pred cCCCCEEEEe---------cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 27 HQTKPILFAG---------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 27 ~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
|||+++++.. +..+.+.|+|+++++....... . ..+....|+| +|+.++-.. ++.|.+++..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~--~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P--PKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E--TTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c--cccccceeec--CCCeeEEEe-cCceEEEECCCCC
Confidence 5777777663 2346789999998766554333 3 4489999999 988888776 4789999887663
No 374
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.74 E-value=0.18 Score=38.99 Aligned_cols=230 Identities=15% Similarity=0.109 Sum_probs=120.9
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEeCC------CC-eEEEEEeeec---CCcceEEEEEeecC----------CCCeE
Q 022870 20 SVTDVCFHQTKPILFAGTTGGELRIWDTV------QH-RTVSSSWVHS---AAHGIVSVATGPSI----------GLNKV 79 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~------~~-~~~~~~~~~~---~~~~v~~~~~~~~~----------~~~~l 79 (291)
.-+.|+|+|.+.+-++...-+...+||.+ .. .++-++.... .+...+.+.|+... ....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999988777877778899999986 12 2233333211 11347788887521 01246
Q ss_pred EEEeCCCeEEEEECCCCCCCCCC-ccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccC-
Q 022870 80 ISQGRDGTVKCWDIENGGLSSNP-SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP- 157 (291)
Q Consensus 80 ~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (291)
+.+++||+|.-|...-......+ ......... . ..+. .+++.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-g------------avYk-----------------------GLAi~~ 147 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-G------------NVYK-----------------------GLAVGP 147 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC-c------------ceee-----------------------eeEEee
Confidence 77889999999986433220000 000100000 0 0000 02222
Q ss_pred -CCCCcEEEEecCCcCeEEEEeCCCccee--eEecccccCCCC-CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 158 -AEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 158 -~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
..+..|.+ +--..++|.+||-.-.+.. ..+..+.++.-. .+....-+.-.-+. |.....+++ .=+.|..-|.|
T Consensus 148 ~~~~~~LYa-adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVt-YA~qd~~~~-d~v~G~G~G~V 224 (336)
T TIGR03118 148 TGGGDYLYA-ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVT-YAQQDADRN-DEVAGAGLGYV 224 (336)
T ss_pred cCCCceEEE-eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEE-EEecCCccc-ccccCCCcceE
Confidence 22444444 5667889999986543321 111111000000 00000000011111 222222122 33455566899
Q ss_pred EEEEccCCCCceeecc--ccccceeEEEee------cCCCeeEEecCCCeEEEEEcCCCceeeee
Q 022870 234 LVWDIRNPGIPLTAMK--VHLEPVLCLSID------ESCNGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~--~h~~~v~~~~~~------~~~~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
-+||+. ++.++++. +.-...+.|+.. ..+.+|+--=.||+|..+|..+++.+-.+
T Consensus 225 dvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 225 NVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred EEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 999988 78888774 223355777763 35667777667999999999998876543
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.65 E-value=0.28 Score=40.09 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=54.6
Q ss_pred cCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC----
Q 022870 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---- 243 (291)
Q Consensus 168 g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~---- 243 (291)
+....++.+||+.+.+.++++.. +. .......+. |..+..... -++.+.-...|..|-....++
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idL-------g~---~g~~pLEvR-flH~P~~~~-gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDL-------GE---EGQMPLEVR-FLHDPDANY-GFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES--------T---TEEEEEEEE-E-SSTT--E-EEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred ccccCeEEEEECCCCcEeeEEec-------CC---CCCceEEEE-ecCCCCccc-eEEEEeccceEEEEEEcCCCCeeee
Confidence 33457899999999999999874 21 234566666 665533222 344444555666655422121
Q ss_pred ceeecc-----------------ccccceeEEEeecCCCeeEEec-CCCeEEEEEcCCCc
Q 022870 244 PLTAMK-----------------VHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHST 285 (291)
Q Consensus 244 ~~~~~~-----------------~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vw~~~~~~ 285 (291)
.+..+. .-..-|+.|..|.|.++|..+. .+|.||.||+....
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 111111 1124578999999999986554 68999999998644
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.60 E-value=0.086 Score=46.76 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=43.3
Q ss_pred CEEEE-ecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeec---CCCCeEEEEeCCCeEEEEECCCC
Q 022870 31 PILFA-GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS---IGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 31 ~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
++|+. ......|.-.|++.|+.+..+..+.. .+|..++-... .....-+.|-.+..|..||.+-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence 34443 34567888999999999999998864 33555543210 01245566777788999999854
No 377
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.41 E-value=0.38 Score=42.75 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=53.0
Q ss_pred CccceeEEEEcCCCCEEEEecCCCeEEEEeCCC----------CeE---EEEEe------eecCCcceEEEEEeecC-CC
Q 022870 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----------HRT---VSSSW------VHSAAHGIVSVATGPSI-GL 76 (291)
Q Consensus 17 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----------~~~---~~~~~------~~~~~~~v~~~~~~~~~-~~ 76 (291)
-.-.|..+.++|+|.+++..|..|.+.+ .+.. ++. -+++. .......|..+.|+|.. ++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3457899999999999998888765433 3321 111 11111 01112459999999942 24
Q ss_pred CeEEEEeCCCeEEEEECCCCC
Q 022870 77 NKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 77 ~~l~s~~~dg~i~iwd~~~~~ 97 (291)
..|+.-..|+++|+||+....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 788888899999999997544
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.35 E-value=0.4 Score=38.34 Aligned_cols=184 Identities=13% Similarity=0.203 Sum_probs=94.1
Q ss_pred CCEEEEecC----------CCeEEEEeCCCC----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 30 KPILFAGTT----------GGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 30 ~~~l~s~~~----------dg~v~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
..+++.|+. .|.|.++++.+. ..+..+..+.-..+|++++-.. .+|+.+. .+.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~----~~lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN----GRLVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET----TEEEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC----CEEEEee-cCEEEEEEccC
Confidence 467777643 289999999874 2333332233236699998775 3444444 37899999998
Q ss_pred CC-CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE
Q 022870 96 GG-LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (291)
Q Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 174 (291)
.+ ... .......... .+....++.++ .|+.-..+
T Consensus 117 ~~~l~~--~~~~~~~~~i-----------------------------------------~sl~~~~~~I~--vgD~~~sv 151 (321)
T PF03178_consen 117 SKTLLK--KAFYDSPFYI-----------------------------------------TSLSVFKNYIL--VGDAMKSV 151 (321)
T ss_dssp TSSEEE--EEEE-BSSSE-----------------------------------------EEEEEETTEEE--EEESSSSE
T ss_pred cccchh--hheecceEEE-----------------------------------------EEEeccccEEE--EEEcccCE
Confidence 76 221 1011110000 11222334444 35545667
Q ss_pred EEEeCCC-cceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC------CC-cee
Q 022870 175 EIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP------GI-PLT 246 (291)
Q Consensus 175 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~------~~-~~~ 246 (291)
.++..+. ...+..+.. +.....++++. |-++ +. .++++..+|.+.++..... +. .+.
T Consensus 152 ~~~~~~~~~~~l~~va~----------d~~~~~v~~~~-~l~d---~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR----------DYQPRWVTAAE-FLVD---ED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp EEEEEETTTE-EEEEEE----------ESS-BEEEEEE-EE-S---SS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred EEEEEEccCCEEEEEEe----------cCCCccEEEEE-EecC---Cc-EEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 7664433 222222321 11244567776 7765 23 7999999999999987621 11 111
Q ss_pred -ecccc-ccceeEE---EeecC--C------CeeEEecCCCeEEE
Q 022870 247 -AMKVH-LEPVLCL---SIDES--C------NGGISGGADQKIVL 278 (291)
Q Consensus 247 -~~~~h-~~~v~~~---~~~~~--~------~~l~s~s~dg~i~v 278 (291)
...-| ...|+++ ++.|. + ..++-++.+|.|.+
T Consensus 217 ~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 217 RISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 11222 3567777 44441 1 23777778888874
No 379
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.35 E-value=0.47 Score=39.14 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=41.2
Q ss_pred CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
|+.+|++-+.||.+.+|+-+. ......+.. ---..-+++.+....+++++.+..+.-|..
T Consensus 144 ~~~~IcVQS~DG~L~~feqe~-~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 144 GRDFICVQSMDGSLSFFEQES-FAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CceEEEEEecCceEEEEeCCc-EEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 345899999999999999774 222222322 223345777777778888888888877765
No 380
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.34 E-value=0.03 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=25.8
Q ss_pred cceeEEEEcCC-C--CEEEEecCCCeEEEEeCCC
Q 022870 19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ 49 (291)
Q Consensus 19 ~~v~~l~~~~~-~--~~l~s~~~dg~v~iwd~~~ 49 (291)
+.|+++.|+|. + .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5888888889999999985
No 381
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.31 E-value=0.33 Score=37.00 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=33.1
Q ss_pred ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccc
Q 022870 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (291)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~ 252 (291)
...+..|. .+|++ . .|++...+|.|.+|++.+ -+....+..++
T Consensus 229 ~d~i~kmS-lSPdg---~-~La~ih~sG~lsLW~iPs-L~~~~~W~~~e 271 (282)
T PF15492_consen 229 QDGIFKMS-LSPDG---S-LLACIHFSGSLSLWEIPS-LRLQRSWKQDE 271 (282)
T ss_pred CCceEEEE-ECCCC---C-EEEEEEcCCeEEEEecCc-chhhcccchhh
Confidence 45677787 99994 4 999999999999999987 55555555433
No 382
>PHA03098 kelch-like protein; Provisional
Probab=96.31 E-value=0.63 Score=40.21 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=33.0
Q ss_pred CCCEEEEecCCC------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC-----CeEEEEECCCCC
Q 022870 29 TKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-----GTVKCWDIENGG 97 (291)
Q Consensus 29 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 97 (291)
++..++.||.++ .+..||..+.+-...-....... -.+++. - ++..++.||.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~-~~~~~~-~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRK-NPGVTV-F--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccc-cceEEE-E--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 445666776543 46778877655432111111111 122222 2 44666777765 346677776654
Q ss_pred C
Q 022870 98 L 98 (291)
Q Consensus 98 ~ 98 (291)
.
T Consensus 370 W 370 (534)
T PHA03098 370 W 370 (534)
T ss_pred e
Confidence 3
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.29 E-value=0.67 Score=40.36 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=37.1
Q ss_pred cceeEEEEcCCCCEEEEec------CCC--eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeC
Q 022870 19 ASVTDVCFHQTKPILFAGT------TGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~ 84 (291)
..+...+++|+|+.++... .|+ .|.+++.. +.. ..+.. . .....-.|+| +|..+++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g--~~~t~PsWsp--DG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-G--HSLTRPSWSL--DADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-C--CCCCCceECC--CCCceEEEec
Confidence 3577889999998876554 243 45555643 222 22221 2 2278889999 8888877654
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.24 E-value=0.54 Score=40.83 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=51.4
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
....-+.-+.-++..+.-+...++.|||...+.....-.. ...++|..+.|....+++.+++.|..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 3444444455444444444556799999988775544332 22266999999877689999999999999999653
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.21 E-value=0.079 Score=43.42 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=62.0
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC--CC----------
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GL---------- 76 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---------- 76 (291)
.....|......+.+++.+|++++.|+...=|.|.++|+.++..++.+++-.++ .+.|.... ..
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA----qc~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA----QCGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc----eEEEEEeecccccccccccccC
Confidence 345667777788999999999998888888899999999999888888776543 22221100 00
Q ss_pred -----C--eEEEEeCCCeEEEEECCCCCC
Q 022870 77 -----N--KVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 77 -----~--~l~s~~~dg~i~iwd~~~~~~ 98 (291)
. +++-+-.-|.|.||.++++..
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 1 223466678999999998764
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.43 Score=36.62 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=40.3
Q ss_pred EEcCCCCEEEEecCC-----CeEEEEeCCCC-eEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 25 CFHQTKPILFAGTTG-----GELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 25 ~~~~~~~~l~s~~~d-----g~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
.|||||.+|+..-.| |.|-|||...+ +.+.++..|. -.-..+.+.+ ||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G--iGpHev~lm~--DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG--IGPHEVTLMA--DGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC--cCcceeEEec--CCcEEEEeC
Confidence 589999988765333 77999998743 4556666665 3367888999 998888654
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.06 E-value=0.039 Score=28.74 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=28.4
Q ss_pred cceeEEEeecCC---CeeEEecCCCeEEEEEcCCCceeeee
Q 022870 253 EPVLCLSIDESC---NGGISGGADQKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 253 ~~v~~~~~~~~~---~~l~s~s~dg~i~vw~~~~~~~~~~~ 290 (291)
+.|.++.|+|+. .+|+-+-.-|.|.|+|+++.-..+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceEe
Confidence 358899999744 37787777899999999965444443
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.55 Score=37.12 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCC--cceee---EecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT--AERCT---RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~ 228 (291)
++||||++.+++ +=+..+.|.-|++.. +..-. .+... .......+.+ ... +|. +.+++.
T Consensus 168 la~SpDg~tly~-aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~------~~~G~PDG~~-----vDa---dG~-lw~~a~ 231 (307)
T COG3386 168 LAFSPDGKTLYV-ADTPANRIHRYDLDPATGPIGGRRGFVDFD------EEPGLPDGMA-----VDA---DGN-LWVAAV 231 (307)
T ss_pred eEECCCCCEEEE-EeCCCCeEEEEecCcccCccCCcceEEEcc------CCCCCCCceE-----EeC---CCC-EEEecc
Confidence 899999987766 445467888887763 11100 01000 0111112221 222 254 332444
Q ss_pred CCC-cEEEEEccCCCCceeeccccccceeEEEe-ecCCCeeEE
Q 022870 229 EDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGIS 269 (291)
Q Consensus 229 ~dg-~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s 269 (291)
.+| .|.+|+.. ++++..+......+++++| .++.+.|..
T Consensus 232 ~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 232 WGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred cCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 443 89999987 7888888877788999999 555555543
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.01 E-value=0.43 Score=35.50 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=63.9
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEe--CCCcc-----eeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEe
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWD--LNTAE-----RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~ 226 (291)
++|+.+.+.+.. .-+.+-+|.-|| ..++. .+..++.. .+ ..+.. ..+++ ... +|. +.++
T Consensus 163 l~Wd~d~K~fY~-iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~-~e~~~-PDGm~-----ID~---eG~-L~Va 228 (310)
T KOG4499|consen 163 LAWDSDAKKFYY-IDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QP-FESLE-PDGMT-----IDT---EGN-LYVA 228 (310)
T ss_pred ccccccCcEEEE-EccCceEEeeeecCCCcccccCcceeEEeccC--CC-cCCCC-CCcce-----Ecc---CCc-EEEE
Confidence 888877766554 566677887787 55543 23333310 00 01111 12222 222 265 6677
Q ss_pred ecCCCcEEEEEccCCCCceeeccccccceeEEEe-ecCCCee-EEec
Q 022870 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGG-ISGG 271 (291)
Q Consensus 227 g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l-~s~s 271 (291)
.-+.|+|...|..+ ++.+.+++-....|++++| .++-..+ +|+.
T Consensus 229 ~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred EecCcEEEEECCCC-CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 77889999999999 9999999888999999999 4433344 4443
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.95 E-value=0.76 Score=37.92 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=47.6
Q ss_pred EEEEcCCCCEEEEecCCCeEEE---EeCCC-----CeEEEEEeeecCC---cceEEEEEeec---------CCCCeEEEE
Q 022870 23 DVCFHQTKPILFAGTTGGELRI---WDTVQ-----HRTVSSSWVHSAA---HGIVSVATGPS---------IGLNKVISQ 82 (291)
Q Consensus 23 ~l~~~~~~~~l~s~~~dg~v~i---wd~~~-----~~~~~~~~~~~~~---~~v~~~~~~~~---------~~~~~l~s~ 82 (291)
.++.+|++..|+.|..+..+.+ |+... +.......+.-.. +.|+++.+-|. .|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988777665 64311 1222222221111 45888887664 245688899
Q ss_pred eCCCeEEEEECCC
Q 022870 83 GRDGTVKCWDIEN 95 (291)
Q Consensus 83 ~~dg~i~iwd~~~ 95 (291)
..+|.|++|....
T Consensus 86 ~ssG~vrfyte~G 98 (415)
T PF14655_consen 86 TSSGYVRFYTENG 98 (415)
T ss_pred ecccEEEEEeccc
Confidence 9999999999743
No 391
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.94 E-value=0.46 Score=35.34 Aligned_cols=80 Identities=5% Similarity=-0.100 Sum_probs=53.0
Q ss_pred eeEEEecCCCCCCceEEEeecCCCcEEEEE--ccCC----CCceeeccc----cccceeEEEeecCCCeeEEecCCCeEE
Q 022870 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWD--IRNP----GIPLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIV 277 (291)
Q Consensus 208 ~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd--~~~~----~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~ 277 (291)
..++ |..+ .+.+.++-+.+-.|.-|| ..++ .+.+..++. .+-..-.++.+.+|++.++.=..++|.
T Consensus 161 Ngl~-Wd~d---~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 161 NGLA-WDSD---AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred cccc-cccc---CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence 3344 7754 333666777788887787 3331 122333332 122345677788999888888889999
Q ss_pred EEEcCCCceeeeeC
Q 022870 278 LYNLDHSTVSHCVI 291 (291)
Q Consensus 278 vw~~~~~~~~~~~~ 291 (291)
..|..+|++++.++
T Consensus 237 ~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 237 KVDPTTGKILLEIK 250 (310)
T ss_pred EECCCCCcEEEEEE
Confidence 99999999998763
No 392
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.86 E-value=0.0058 Score=53.38 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=49.8
Q ss_pred ecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe-----------ecCCCeeEEecCCCeEEEEEc
Q 022870 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-----------DESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 213 ~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~s~s~dg~i~vw~~ 281 (291)
|.|--.+. .++..+-.++.|++..... .....+++|...++.++| +|||..|+..+.||.+++|.+
T Consensus 188 wcp~~~~~-~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 188 WCPIAVNK-VYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eccccccc-ceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55543323 2888888999999988774 333566778887777664 889999999999999998875
Q ss_pred C
Q 022870 282 D 282 (291)
Q Consensus 282 ~ 282 (291)
.
T Consensus 265 y 265 (1283)
T KOG1916|consen 265 Y 265 (1283)
T ss_pred e
Confidence 3
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.79 E-value=0.024 Score=41.55 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=42.5
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEE-EEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 99 (291)
+..++.|+.+|.|.+|+........ .+.... ..|.++--.- +++.+..+++.||.|+.|++...+.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~Ip~~-~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGIPNG-RDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhccc--ccceeccccc-cccceeEEeccCCceeeeccccCcee
Confidence 4578889999999999976321111 111111 2233333222 25568889999999999999877643
No 394
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.11 Score=47.12 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=76.5
Q ss_pred cCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (291)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (291)
..+|+...++...+.+-.|..||+++-..-...+...+ ..............++. |+|.-+. ..++...|+.|++
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl-~~s~ts~ek~vf~~~~~-wnP~vp~---n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPL-KNSATSFEKPVFQLKNV-WNPLVPL---NSAVDLSDLSLRV 182 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccc-ccccchhcccccccccc-ccCCccc---hhhhhccccchhh
Confidence 45565555554555556799999986432221110000 00011112344556666 9987432 5777888999999
Q ss_pred EEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 236 wd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
..+......+..+. -....++++|+|.|+.++.|-..|++.-|...-
T Consensus 183 ~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 98875333444443 356789999999999999999999998887553
No 395
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.58 E-value=0.98 Score=39.38 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=37.3
Q ss_pred eeeeeEEEecCCCCCCceEEEeecCCCcEEE---EEccCCCC-ce---eecc-ccccceeEEEeecCCCeeEEecCCCeE
Q 022870 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILV---WDIRNPGI-PL---TAMK-VHLEPVLCLSIDESCNGGISGGADQKI 276 (291)
Q Consensus 205 ~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v---wd~~~~~~-~~---~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i 276 (291)
+.+..+. |+|+ |. .++... +|.|++ -.... +. .+ ..+. +-...+.++.|.+++.++ .+..++.-
T Consensus 448 g~Issl~-wSpD---G~-RiA~i~-~g~v~Va~Vvr~~~-G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~ 519 (591)
T PRK13616 448 GPISELQ-LSRD---GV-RAAMII-GGKVYLAVVEQTED-GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEH 519 (591)
T ss_pred CCcCeEE-ECCC---CC-EEEEEE-CCEEEEEEEEeCCC-CceeecccEEeecccCCccccceEecCCEEE-EEecCCCC
Confidence 3477776 9999 44 444333 477777 33222 32 11 1122 223346889998888754 44444444
Q ss_pred EEEEc
Q 022870 277 VLYNL 281 (291)
Q Consensus 277 ~vw~~ 281 (291)
.+|.+
T Consensus 520 ~v~~v 524 (591)
T PRK13616 520 PVWYV 524 (591)
T ss_pred ceEEE
Confidence 45543
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.57 E-value=1.4 Score=38.31 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCCCEEEEecCCC------eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeEEEEECCC
Q 022870 28 QTKPILFAGTTGG------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIEN 95 (291)
Q Consensus 28 ~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~ 95 (291)
..+.+++.||.++ .+..+|..++.-...-..... ..-.+++... +...++||.| .++..||..+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEEC---CEEEEEccccCCCcccceEEEecCCC
Confidence 3456778888773 688889877643332222221 2245556555 4777889988 3678899888
Q ss_pred CCCCC
Q 022870 96 GGLSS 100 (291)
Q Consensus 96 ~~~~~ 100 (291)
++...
T Consensus 359 ~~W~~ 363 (571)
T KOG4441|consen 359 NQWTP 363 (571)
T ss_pred Cceec
Confidence 87543
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.54 E-value=1.5 Score=39.08 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=32.3
Q ss_pred ceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeec
Q 022870 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (291)
Q Consensus 204 ~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 248 (291)
...+..+. |+|.+.++. .|++=+.|+.+|+||+.....+...+
T Consensus 146 ~~~i~qv~-WhP~s~~~~-~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 146 SLEIKQVR-WHPWSESDS-HLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred CceEEEEE-EcCCCCCCC-eEEEEecCCEEEEEecCCCCCCeEEE
Confidence 44566676 999876566 78888899999999998755554443
No 398
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.51 E-value=0.8 Score=34.95 Aligned_cols=165 Identities=13% Similarity=0.209 Sum_probs=79.2
Q ss_pred ceEEEEEeecCCCC-eEEEEeCCCeEEEEECCCCCCCCCCcccccc-ceEEEEEeecccCccceeccCCCCceeeecccC
Q 022870 64 GIVSVATGPSIGLN-KVISQGRDGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVG 141 (291)
Q Consensus 64 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
.+..++|+| +.+ ++++....+.|..++.+ ++.++ ...+.. .....
T Consensus 23 e~SGLTy~p--d~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~Eg---------------------------- 69 (248)
T PF06977_consen 23 ELSGLTYNP--DTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEG---------------------------- 69 (248)
T ss_dssp -EEEEEEET--TTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEE----------------------------
T ss_pred CccccEEcC--CCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCcee----------------------------
Confidence 499999999 655 55567777888888864 44432 111111 00000
Q ss_pred ccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcc------eeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870 142 ETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 215 (291)
+++..++. ++.+...++.+.++++.... ....+.. +.....+.-.-.++ |.|
T Consensus 70 ------------I~y~g~~~--~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~N~G~EGla-~D~ 127 (248)
T PF06977_consen 70 ------------ITYLGNGR--YVLSEERDQRLYIFTIDDDTTSLDRADVQKISL-------GFPNKGNKGFEGLA-YDP 127 (248)
T ss_dssp ------------EEE-STTE--EEEEETTTTEEEEEEE----TT--EEEEEEEE----------S---SS--EEEE-EET
T ss_pred ------------EEEECCCE--EEEEEcCCCcEEEEEEeccccccchhhceEEec-------ccccCCCcceEEEE-EcC
Confidence 33444443 33356668899999884321 1122221 11111222234454 988
Q ss_pred CCCCCceEEEeecCCCcEEEEEccC--CCCcee--e------ccccccceeEEEeecC-CCeeEEecCCCeEEEEEcCCC
Q 022870 216 SKSQGFVNVLAGYEDGSILVWDIRN--PGIPLT--A------MKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 216 ~~~~g~~~l~~g~~dg~i~vwd~~~--~~~~~~--~------~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vw~~~~~ 284 (291)
.. . .|+++-+..-..+|.++. ....+. . .......+.+++++|. +.+++-+.....|..+| .+|
T Consensus 128 ~~---~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G 202 (248)
T PF06977_consen 128 KT---N-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQG 202 (248)
T ss_dssp TT---T-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT-
T ss_pred CC---C-EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCC
Confidence 73 2 455566666666776653 111111 1 1123346789999875 45666777788888888 555
Q ss_pred ceee
Q 022870 285 TVSH 288 (291)
Q Consensus 285 ~~~~ 288 (291)
+.+.
T Consensus 203 ~~~~ 206 (248)
T PF06977_consen 203 RVVS 206 (248)
T ss_dssp -EEE
T ss_pred CEEE
Confidence 5443
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.45 E-value=1.9 Score=38.90 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc------ceEEEEEee--------------cCCCCeEEEEeCCCeE
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH------GIVSVATGP--------------SIGLNKVISQGRDGTV 88 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~--------------~~~~~~l~s~~~dg~i 88 (291)
.+..|+.++.++.|.-.|..+|+.+..+....... ....+++.. ...+.+++.++.|+.|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 35578888889999999999999988776433211 012233321 1133588888899999
Q ss_pred EEEECCCCCCCC
Q 022870 89 KCWDIENGGLSS 100 (291)
Q Consensus 89 ~iwd~~~~~~~~ 100 (291)
.-.|.++++...
T Consensus 273 iALDA~TGk~~W 284 (764)
T TIGR03074 273 IALDADTGKLCE 284 (764)
T ss_pred EEEECCCCCEEE
Confidence 999999987643
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.41 E-value=2 Score=38.95 Aligned_cols=240 Identities=11% Similarity=0.088 Sum_probs=116.7
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCC------CeEEEEEeeecCCcceEEEEEeecCCCCeEEEE---eCCCeEEEEE
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ---GRDGTVKCWD 92 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~dg~i~iwd 92 (291)
.-+...|.++.+...-.+|.+++-.+.+ +....-+...-..-.|..++|........+++. +.+..++.|+
T Consensus 117 ~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fly~~s~pt~~vly~Ds~~~Hv~~ye 196 (1096)
T KOG1897|consen 117 QILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFLYGCSDPTLAVLYKDSDGRHVKTYE 196 (1096)
T ss_pred eEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEEcCCCCCceEEEEEcCCCcEEEEEE
Confidence 3456678888787788888888877665 233332222222123788888652222345443 4445677887
Q ss_pred CCCCCCCC-CCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEE
Q 022870 93 IENGGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAV 166 (291)
Q Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 166 (291)
+.-..... +-... ..........-+...+...+...+...-.+.-............... ...++++..++
T Consensus 197 lnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yL-- 273 (1096)
T KOG1897|consen 197 LNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYL-- 273 (1096)
T ss_pred eccchhhccccccc-cccccCCceeeecCCCCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEE--
Confidence 66442110 00000 00111111222233333333333322222222222111111222222 44567777766
Q ss_pred ecCCcCeEEEEeCC-CcceeeE--ecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 167 AGEQLSEVEIWDLN-TAERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 167 ~g~~d~~i~~wd~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
-|..+|.+...-+. +++.... ++.+. ........++. +-++ | ++.+|+.-|.=.+..+.+...
T Consensus 274 l~d~~G~Lf~l~l~~~~e~~s~~~lkve~--------lge~siassi~-~L~n---g--~lFvGS~~gdSqLi~L~~e~d 339 (1096)
T KOG1897|consen 274 LGDEDGMLFKLLLSHTGETVSGLDLKVEY--------LGETSIASSIN-YLDN---G--VLFVGSRFGDSQLIKLNTEPD 339 (1096)
T ss_pred EecCCCcEEEEEeecccccccceEEEEEe--------cCCcchhhhhh-cccC---c--eEEEeccCCceeeEEccccCC
Confidence 46678888776555 4443322 22100 11133444454 5555 3 799999887777777664211
Q ss_pred ------ceeeccccccceeEEEe---e--cCCCeeEEec---CCCeEEEEE
Q 022870 244 ------PLTAMKVHLEPVLCLSI---D--ESCNGGISGG---ADQKIVLYN 280 (291)
Q Consensus 244 ------~~~~~~~h~~~v~~~~~---~--~~~~~l~s~s---~dg~i~vw~ 280 (291)
.+.++. .-+||..++. + .+++ +++++ .||++|+..
T Consensus 340 ~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~q-ivtCsGa~kdgSLRiiR 388 (1096)
T KOG1897|consen 340 VGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQ-IVTCSGAFKDGSLRIIR 388 (1096)
T ss_pred CCchhhhhhhcc-cccceeeEEEEeccccCCce-EEEEeCCCCCCcEEEEe
Confidence 123333 2468888887 2 2344 55444 378888864
No 401
>PHA02713 hypothetical protein; Provisional
Probab=95.32 E-value=0.91 Score=39.43 Aligned_cols=20 Identities=0% Similarity=-0.052 Sum_probs=15.2
Q ss_pred CceEEEeecCCC--cEEEEEccC
Q 022870 220 GFVNVLAGYEDG--SILVWDIRN 240 (291)
Q Consensus 220 g~~~l~~g~~dg--~i~vwd~~~ 240 (291)
|+ +.++|+.+| .+..||..+
T Consensus 513 ~~-iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 513 NT-IMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CE-EEEEeeecceeehhhcCccc
Confidence 44 778888887 777888876
No 402
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.76 Score=33.59 Aligned_cols=68 Identities=10% Similarity=0.000 Sum_probs=38.5
Q ss_pred CCCEEEEecC--CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCCCCC
Q 022870 29 TKPILFAGTT--GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSS 100 (291)
Q Consensus 29 ~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~ 100 (291)
+|.++.+.+. ...|++||+.+++.+.+....... +..=-... -++.+. -.=.+|.-..+|.++.+...
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~--~FgEGit~--~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDT--VFGEGITK--LGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCcc--ccccceee--ccceEEEEEeccceeEEEChHHhhhhc
Confidence 4556666554 346999999999887765543211 22211111 123332 33456778888888766543
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.31 E-value=1.3 Score=36.02 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=93.7
Q ss_pred CCCCCceEEecCCccceeEE-----EEcCCCCEEEEecC-C--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC
Q 022870 5 PPPPDPVAVLRGHRASVTDV-----CFHQTKPILFAGTT-G--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l-----~~~~~~~~l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 76 (291)
|..+-.+..|..+...-..+ +|.++|+.|+.++. | ..+.+-|+++++..+--.+... ......++| ++
T Consensus 17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g~~~s~--~~ 92 (386)
T PF14583_consen 17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFGGFLSP--DD 92 (386)
T ss_dssp TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-T--TS
T ss_pred CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--CccceEEec--CC
Confidence 44444555555433322223 56778876655443 4 4567778888876654433221 133455667 66
Q ss_pred CeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCCccc
Q 022870 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (291)
Q Consensus 77 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (291)
+.++-...+..|+-.|+++.+.. .++.++..-.....+........ ...+...+.....+. .+
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~--~vy~~p~~~~g~gt~v~n~d~t~----------~~g~e~~~~d~~~l~-----~~ 155 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEER--VVYEVPDDWKGYGTWVANSDCTK----------LVGIEISREDWKPLT-----KW 155 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EE--EEEE--TTEEEEEEEEE-TTSSE----------EEEEEEEGGG----------SH
T ss_pred CeEEEEECCCeEEEEECCcCcEE--EEEECCcccccccceeeCCCccE----------EEEEEEeehhccCcc-----cc
Confidence 77765555578888999887642 24444443332222211111000 000000000000000 00
Q ss_pred CCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecC---CC-c
Q 022870 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE---DG-S 232 (291)
Q Consensus 157 ~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~---dg-~ 232 (291)
....+.+. ..-...|.-.|+.+++....+.. ....--+. |+|..+ . .|+-|.+ +. .
T Consensus 156 ~~f~e~~~---a~p~~~i~~idl~tG~~~~v~~~-------------~~wlgH~~-fsP~dp--~-li~fCHEGpw~~Vd 215 (386)
T PF14583_consen 156 KGFREFYE---ARPHCRIFTIDLKTGERKVVFED-------------TDWLGHVQ-FSPTDP--T-LIMFCHEGPWDLVD 215 (386)
T ss_dssp HHHHHHHH---C---EEEEEEETTT--EEEEEEE-------------SS-EEEEE-EETTEE--E-EEEEEE-S-TTTSS
T ss_pred HHHHHHHh---hCCCceEEEEECCCCceeEEEec-------------CccccCcc-cCCCCC--C-EEEEeccCCcceec
Confidence 00001111 11235677788888887666653 23344455 888743 2 4554443 22 1
Q ss_pred EEEEEccCCCCceeecccccc--ceeEEEeecCCCeeEE-----ecCCCeEEEEEcCCCc
Q 022870 233 ILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGIS-----GGADQKIVLYNLDHST 285 (291)
Q Consensus 233 i~vwd~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s-----~s~dg~i~vw~~~~~~ 285 (291)
-|||-+++.+.-...+..|.. .+.-=-|.++|..|.- ++.+..|.-.|+.+++
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 366766654555555544432 2223345888876643 2234456667777654
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.23 E-value=0.13 Score=38.49 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=45.6
Q ss_pred EEEeecCCCcEEEEEccCCCCceee-------cc-------ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPLTA-------MK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~-------~~-------~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
+|++-+.+|.+++||+.+ .+.+.. +. .....|..+.++.+|.-|++-+ +|..+.|+.+-+
T Consensus 24 ~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 899999999999999997 433211 22 2456788889999998888776 578899987654
No 405
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.95 E-value=0.4 Score=41.52 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=42.8
Q ss_pred EEEeecCCCcEEEEEccC---CCCceee-----------ccc-----------cccceeEEEeec----CCCeeEEecCC
Q 022870 223 NVLAGYEDGSILVWDIRN---PGIPLTA-----------MKV-----------HLEPVLCLSIDE----SCNGGISGGAD 273 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~---~~~~~~~-----------~~~-----------h~~~v~~~~~~~----~~~~l~s~s~d 273 (291)
.++.+..||.+....... .+..... +.+ ....+.+++++. +..+|++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 788888899888887764 1211111 110 123445555655 66789999999
Q ss_pred CeEEEEEcCCCceeeee
Q 022870 274 QKIVLYNLDHSTVSHCV 290 (291)
Q Consensus 274 g~i~vw~~~~~~~~~~~ 290 (291)
+++|+||+.++++++++
T Consensus 240 ~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATI 256 (547)
T ss_dssp SEEEEEETTTTCEEEEE
T ss_pred CeEEEEECCCCeEEEEe
Confidence 99999999999997653
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.90 E-value=2.1 Score=36.52 Aligned_cols=164 Identities=11% Similarity=0.129 Sum_probs=85.5
Q ss_pred ccceeEEEEcCCCCEEEEec--CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC--CCCeEEEEeCCCeEEEEEC
Q 022870 18 RASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI--GLNKVISQGRDGTVKCWDI 93 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~ 93 (291)
-.+|..++|..-.+.++|.- .+|.+++=| .+.+..|+ .|..+.|.|.. +...|++......|.+|.+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE------hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE------HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc------eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 45788899964333444542 344443332 23444432 29999999831 2235666677789999998
Q ss_pred CCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-cccCCCCCcEEEEecCCcC
Q 022870 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-DDVPAEGPKYMAVAGEQLS 172 (291)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~d~ 172 (291)
........... ....|.+. ..++.... ..|+|...-+.+.++. |
T Consensus 90 ~~s~~e~~K~l-----~sQtcEi~----------------------------e~~pvLpQGCVWHPk~~iL~VLT~~-d- 134 (671)
T PF15390_consen 90 CPSTTERNKLL-----MSQTCEIR----------------------------EPFPVLPQGCVWHPKKAILTVLTAR-D- 134 (671)
T ss_pred ccCccccccce-----eeeeeecc----------------------------CCcccCCCcccccCCCceEEEEecC-c-
Confidence 74322110000 00111000 00111101 4599998766554543 3
Q ss_pred eEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccC
Q 022870 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (291)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~ 240 (291)
.-.+++++......+.. ....+.+.+.+ |.+| |++.+++.+..=.-++||-..
T Consensus 135 vSV~~sV~~d~srVkaD-----------i~~~G~IhCAC-WT~D---G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKAD-----------IKTSGLIHCAC-WTKD---GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeEeeeeeeCCceEEEe-----------ccCCceEEEEE-ecCc---CCEEEEEeCCeEEEEEecCch
Confidence 33455655433222222 11356777776 9998 554555556666788998653
No 407
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.78 E-value=2 Score=35.69 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=28.1
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV 48 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 48 (291)
+++.++.--.+.|.++.|+.+. .|+.-..||.++++|+.
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4444444333789999998865 55566789999999986
No 408
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.72 Score=38.57 Aligned_cols=81 Identities=10% Similarity=0.069 Sum_probs=49.9
Q ss_pred CceEEecCCccceeEEEEcCCCC-------EEEEecCCCeEEEEeCCC-Ce-EEEEEeeecC--CcceEEEEEeecCCCC
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKP-------ILFAGTTGGELRIWDTVQ-HR-TVSSSWVHSA--AHGIVSVATGPSIGLN 77 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~-------~l~s~~~dg~v~iwd~~~-~~-~~~~~~~~~~--~~~v~~~~~~~~~~~~ 77 (291)
+.+...+-|.+ |+-+.+.|+.. .-+.|-.|..|.-||.+- ++ .+...+.|.- .....|.+-.. + .
T Consensus 367 KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~--s-G 442 (644)
T KOG2395|consen 367 KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE--S-G 442 (644)
T ss_pred eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecC--C-c
Confidence 34444554554 77777877542 224567788899999763 22 3333333321 12245555444 4 7
Q ss_pred eEEEEeCCCeEEEEEC
Q 022870 78 KVISQGRDGTVKCWDI 93 (291)
Q Consensus 78 ~l~s~~~dg~i~iwd~ 93 (291)
++++||.+|.|++||-
T Consensus 443 ~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 443 YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eEEEeecCCcEEeehh
Confidence 9999999999999997
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=94.72 E-value=2.4 Score=36.17 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=32.9
Q ss_pred CCCEEEEecCCC-----eEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC--CeEEEEECCCCC
Q 022870 29 TKPILFAGTTGG-----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIENGG 97 (291)
Q Consensus 29 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~ 97 (291)
++.+++.||.++ .+..||..+++-...-....... -.+++ .- ++...+.||.+ .++..||..+++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~-~~~~v-~~--~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL-YASGV-PA--NNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh-cceEE-EE--CCEEEEECCcCCCCceEEEECCCCe
Confidence 445667777643 56778877655333211111111 11222 22 55666677754 356777766543
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.37 E-value=0.44 Score=35.63 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=48.4
Q ss_pred cCCCCEEEEecCCCeEEEEeCCCCeEEEEE-------ee-----ecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 27 HQTKPILFAGTTGGELRIWDTVQHRTVSSS-------WV-----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 27 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
..++.+|++-+.+|.+++||+.+++.+..- .. ......|..+.+.. +|.-+++-+ +|..+.|+..
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEeccc
Confidence 346778999999999999999988764432 10 01224588888887 777776655 5788999887
Q ss_pred CCC
Q 022870 95 NGG 97 (291)
Q Consensus 95 ~~~ 97 (291)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 654
No 411
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.29 E-value=0.84 Score=38.81 Aligned_cols=76 Identities=9% Similarity=0.112 Sum_probs=43.3
Q ss_pred cceeEEEEcCC----CCEEEEecCCCeEEEEeCC-----CCeEEEEEeeecC-Ccce--EEEEEeecCCCCeEEEEeCCC
Q 022870 19 ASVTDVCFHQT----KPILFAGTTGGELRIWDTV-----QHRTVSSSWVHSA-AHGI--VSVATGPSIGLNKVISQGRDG 86 (291)
Q Consensus 19 ~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~-~~~v--~~~~~~~~~~~~~l~s~~~dg 86 (291)
+-|..+.|.|- -..|++......|.||.+. +++.+.+-..+-. +-|| ..+.|+| ....|+.-....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~~d 134 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTARD 134 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEecCc
Confidence 45899999983 3245555667889999875 2333332222111 0112 4678999 656666544443
Q ss_pred eEEEEECCCC
Q 022870 87 TVKCWDIENG 96 (291)
Q Consensus 87 ~i~iwd~~~~ 96 (291)
.=.++++...
T Consensus 135 vSV~~sV~~d 144 (671)
T PF15390_consen 135 VSVLPSVHCD 144 (671)
T ss_pred eeEeeeeeeC
Confidence 3345666544
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.29 E-value=4 Score=36.94 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCEEEEecCCCeEEEEeCCCCeEEEEEeeecC----------CcceEEEEEeecCCCCeEEEEeC----------CCeEE
Q 022870 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA----------AHGIVSVATGPSIGLNKVISQGR----------DGTVK 89 (291)
Q Consensus 30 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~l~s~~~----------dg~i~ 89 (291)
+..++.++.|+.+.-.|.++|+....+..... ...-..+.-.|...++.++.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 34788899999999999999998876542110 00001111122112356666643 68899
Q ss_pred EEECCCCCCCC
Q 022870 90 CWDIENGGLSS 100 (291)
Q Consensus 90 iwd~~~~~~~~ 100 (291)
-+|.++++...
T Consensus 340 A~Da~TGkl~W 350 (764)
T TIGR03074 340 AFDVNTGALVW 350 (764)
T ss_pred EEECCCCcEee
Confidence 99999998765
No 413
>PRK10115 protease 2; Provisional
Probab=94.22 E-value=3.9 Score=36.63 Aligned_cols=71 Identities=7% Similarity=-0.074 Sum_probs=45.1
Q ss_pred ceeEEEEcCCCCEEEEecC-----CCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeE
Q 022870 20 SVTDVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTV 88 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i 88 (291)
.+..+.++|+|++|+.+.. ...|++-|+.++..+...- ... -..++|.+ |++.|+-...+ ..|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~--~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV--EPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc--ceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 4677889999998876532 2458888998775332211 111 14689999 87766544332 357
Q ss_pred EEEECCCC
Q 022870 89 KCWDIENG 96 (291)
Q Consensus 89 ~iwd~~~~ 96 (291)
..+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77777766
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.16 E-value=2.3 Score=33.62 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=41.4
Q ss_pred CCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 16 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
+-.+.+..+..+++|.+++++..-....-||.....-...-.... ..|.+|.|.| ++.+.+. ...|.|+.=+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~--~riq~~gf~~--~~~lw~~-~~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSS--RRIQSMGFSP--DGNLWML-ARGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SS--S-EEEEEE-T--TS-EEEE-ETTTEEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCcc--ceehhceecC--CCCEEEE-eCCcEEEEcc
Confidence 344678888889999999988776667788854322221112222 5699999999 8666554 4888888777
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=1.6 Score=40.16 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=59.3
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcce-eeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (291)
+.|+|.-....++ ...|+.|++.-+..... +..+. .....++++ |+|. |+ .++.|-.+|+
T Consensus 161 ~~wnP~vp~n~av-~l~dlsl~V~~~~~~~~~v~s~p-------------~t~~~Tav~-WSpr---GK-Ql~iG~nnGt 221 (1405)
T KOG3630|consen 161 NVWNPLVPLNSAV-DLSDLSLRVKSTKQLAQNVTSFP-------------VTNSQTAVL-WSPR---GK-QLFIGRNNGT 221 (1405)
T ss_pred ccccCCccchhhh-hccccchhhhhhhhhhhhhcccC-------------cccceeeEE-eccc---cc-eeeEecCCCe
Confidence 4466655444443 44588888887654322 22222 345677786 9998 55 8999999999
Q ss_pred EEEEEccCCCCceeeccc---c-ccceeEEEeecCCCeeEE
Q 022870 233 ILVWDIRNPGIPLTAMKV---H-LEPVLCLSIDESCNGGIS 269 (291)
Q Consensus 233 i~vwd~~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s 269 (291)
+.-|-.. .+....+.. . ...|.+|+|-....+|+.
T Consensus 222 ~vQy~P~--leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 222 EVQYEPS--LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred EEEeecc--cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 9988765 232222221 1 368999999666556554
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.14 E-value=4.4 Score=36.92 Aligned_cols=247 Identities=13% Similarity=0.048 Sum_probs=121.4
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEe--CCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 20 SVTDVCFHQTKPILFAGTTGGELRIWD--TVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
.|.-.+|-.|..+|.++..||.+.-+. ..++..-..-+.+-+..|+.=-.|+. .+..-+-+..|.-..+|.-+..-
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s--k~~t~vfa~sdrP~viY~~n~kL 662 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSS--KSRTAVFALSDRPTVIYSSNGKL 662 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEee--CCceEEEEeCCCCEEEEecCCcE
Confidence 344555555678999999999987664 44554333222233334566556665 33333333344555556544321
Q ss_pred CCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc-cccccCCCCCC---cccCCCCCcEEEEecCC---
Q 022870 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDSK---DDVPAEGPKYMAVAGEQ--- 170 (291)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~~--- 170 (291)
+.. |+ ..+ .....|.+.....+...+...++......++..+ ...+..+-+.. +++.+.. .++++.+.+
T Consensus 663 v~s-pl-s~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s-l~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 663 VYS-PL-SLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS-LTFGVLSNRIES 738 (1096)
T ss_pred EEe-cc-chH-HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccc-eEEEEEeccccc
Confidence 111 00 011 0112344444444455555555555555444332 11111222211 6666532 222222110
Q ss_pred -------c---CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec----------CC
Q 022870 171 -------L---SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY----------ED 230 (291)
Q Consensus 171 -------d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~----------~d 230 (291)
. ..++++|-++.+.+...+.. ..+.-..+.+.. |..+. +. ++++|+ ..
T Consensus 739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~--------~~E~~~Si~s~~-~~~d~--~t-~~vVGT~~v~Pde~ep~~ 806 (1096)
T KOG1897|consen 739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE--------RNETALSIISCK-FTDDP--NT-YYVVGTGLVYPDENEPVN 806 (1096)
T ss_pred chhhcCCcceEEEEEEecCCceeEEeecccc--------ccceeeeeeeee-ecCCC--ce-EEEEEEEeeccCCCCccc
Confidence 1 23677777666554433310 011122334444 66552 33 677775 35
Q ss_pred CcEEEEEccCCCCceeecccc--ccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 231 GSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 231 g~i~vwd~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
|.|.+|.... .+.+.....+ .+.|.++.- -+|++||+ -...|++|++.+++.++
T Consensus 807 GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 807 GRIIVFEFEE-LNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELR 862 (1096)
T ss_pred ceEEEEEEec-CCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceeh
Confidence 8899998876 4444444322 344454432 34555554 46689999999886554
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.02 E-value=2.1 Score=32.80 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=92.0
Q ss_pred eecCCcceEEEEEeecCCCCeEEEEeCCC--eEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCcee
Q 022870 58 VHSAAHGIVSVATGPSIGLNKVISQGRDG--TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (291)
Q Consensus 58 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (291)
.|.....-..+.|.. ++.++-+.+.-| .|+.+|+.+++... ...+.......-
T Consensus 40 pHd~~aFTQGL~~~~--~g~LyESTG~yG~S~l~~~d~~tg~~~~--~~~l~~~~FgEG--------------------- 94 (264)
T PF05096_consen 40 PHDPTAFTQGLEFLD--DGTLYESTGLYGQSSLRKVDLETGKVLQ--SVPLPPRYFGEG--------------------- 94 (264)
T ss_dssp E--TT-EEEEEEEEE--TTEEEEEECSTTEEEEEEEETTTSSEEE--EEE-TTT--EEE---------------------
T ss_pred CCCCcccCccEEecC--CCEEEEeCCCCCcEEEEEEECCCCcEEE--EEECCcccccee---------------------
Confidence 355545577888877 767777877766 79999999987543 112221111000
Q ss_pred eecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecC
Q 022870 136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (291)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 215 (291)
++.. ++.++..+ -.++...+||..+.+.+.++... ..+ +.++ ..
T Consensus 95 ------------------it~~--~d~l~qLT-Wk~~~~f~yd~~tl~~~~~~~y~-----------~EG--WGLt-~d- 138 (264)
T PF05096_consen 95 ------------------ITIL--GDKLYQLT-WKEGTGFVYDPNTLKKIGTFPYP-----------GEG--WGLT-SD- 138 (264)
T ss_dssp ------------------EEEE--TTEEEEEE-SSSSEEEEEETTTTEEEEEEE-S-----------SS----EEE-EC-
T ss_pred ------------------EEEE--CCEEEEEE-ecCCeEEEEccccceEEEEEecC-----------Ccc--eEEE-cC-
Confidence 1111 23344333 45799999999999988888731 122 2332 22
Q ss_pred CCCCCceEEEeecCCCcEEEEEccCCCCceeecccc--c---cceeEEEeecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 216 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH--L---EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 216 ~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h--~---~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
|+ .|+.......|+++|..+ .+....+... . ..++.+.|- +|...|=.=....|..-|..+|++...
T Consensus 139 ----g~-~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 139 ----GK-RLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp ----SS-CEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred ----CC-EEEEECCccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 44 566666677999999887 5655555432 1 245666665 454444444556788888888877643
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.99 E-value=3.1 Score=34.63 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=22.9
Q ss_pred eEEEEEeecCCCCeEEEE-eCCC----eEEEEECCCCCC
Q 022870 65 IVSVATGPSIGLNKVISQ-GRDG----TVKCWDIENGGL 98 (291)
Q Consensus 65 v~~~~~~~~~~~~~l~s~-~~dg----~i~iwd~~~~~~ 98 (291)
+....++| ++++++-+ +..| .|+++|+++++.
T Consensus 126 ~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 126 LGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred eeeeeECC--CCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 34667888 88888743 4444 599999998853
No 419
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=93.88 E-value=3.1 Score=34.12 Aligned_cols=190 Identities=14% Similarity=0.052 Sum_probs=101.7
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecc
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
+.|.|.| ++.+.+..+.+-...+.|.++.|.. |-.+++|=-+-.-+.+-|+...+-.+ .+-.++... ++
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~g--dv~yiVTfrqtDPlfviDlsNPenPk-vlGeLKIPG-----fS-- 474 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVG--DVLYIVTFRQTDPLFVIDLSNPENPK-VLGELKIPG-----FS-- 474 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeC--ceEEEEEEeccCceEEEEcCCCCCCc-eeEEEecCC-----ch--
Confidence 3466666 4567777777765557799999988 76677777666678888988765322 000111000 00
Q ss_pred cCccceeccCCCCceeeecccCccccccCCCCCCcccCCCCCcEEEEecCCcCeE--EEEeCCCcceeeEecccccCCCC
Q 022870 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV--EIWDLNTAERCTRLHQNSCGGSP 197 (291)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i--~~wd~~~~~~~~~~~~~~~~~~~ 197 (291)
--++|-|+..++-.|..+|.+ .++|+......+....-.+.
T Consensus 475 ----------------------------------~YLHpigen~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~--- 517 (603)
T COG4880 475 ----------------------------------EYLHPIGENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLS--- 517 (603)
T ss_pred ----------------------------------hhccccCCCcEEEeecccCCceEEEEeccCCCCchhhhheehh---
Confidence 115677777777677777765 56887654332221100000
Q ss_pred CCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEE
Q 022870 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV 277 (291)
Q Consensus 198 ~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 277 (291)
.--.+.-..-.+.. |.|. -..+++-+...|. ++.++. +..+..-..|...+...-|..|-.+++.++ .+.
T Consensus 518 ~~wspvf~dhHAFl-~d~~---~~ifFlPay~~gy--if~ied-g~kl~k~~e~k~na~RA~fi~dylY~vg~~---ev~ 587 (603)
T COG4880 518 NAWSPVFYDHHAFL-YDPE---AEIFFLPAYLGGY--IFFIED-GSKLRKRAERKLNADRAFFIKDYLYLVGGN---EVW 587 (603)
T ss_pred hhcchhhhccceee-cCCc---ccEEEecccCccE--EEEEec-CceeeehhhhcccceeeEEecceEEEeccc---eeE
Confidence 00000000001111 3332 2225556666665 555666 444445456777777777888855544443 466
Q ss_pred EEEcCCCcee
Q 022870 278 LYNLDHSTVS 287 (291)
Q Consensus 278 vw~~~~~~~~ 287 (291)
+.|-++-+++
T Consensus 588 ~ldenswe~V 597 (603)
T COG4880 588 KLDENSWEVV 597 (603)
T ss_pred EeccchHhhh
Confidence 6665554443
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.70 E-value=0.0088 Score=48.72 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=91.2
Q ss_pred EEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCcccc
Q 022870 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD 145 (291)
Q Consensus 66 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (291)
....|.+ .+.-++.++.+..|..||-....... ...+... ..
T Consensus 38 i~~~w~~--e~~nlavaca~tiv~~YD~agq~~le-~n~tg~a----ld------------------------------- 79 (615)
T KOG2247|consen 38 IIHRWRP--EGHNLAVACANTIVIYYDKAGQVILE-LNPTGKA----LD------------------------------- 79 (615)
T ss_pred ceeeEec--CCCceehhhhhhHHHhhhhhcceecc-cCCchhH----hh-------------------------------
Confidence 4556777 66668888888899999866443211 0001000 00
Q ss_pred ccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEE
Q 022870 146 TDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225 (291)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~ 225 (291)
++|..+++.+++ .....+.+.+||+.+.. .++++.. +.. .... . .|++..+ .++
T Consensus 80 --------m~wDkegdvlav-lAek~~piylwd~n~ey-tqqLE~g------g~~--s~sl---l-~wsKg~~----el~ 133 (615)
T KOG2247|consen 80 --------MAWDKEGDVLAV-LAEKTGPIYLWDVNSEY-TQQLESG------GTS--SKSL---L-AWSKGTP----ELV 133 (615)
T ss_pred --------hhhccccchhhh-hhhcCCCeeechhhhhh-HHHHhcc------Ccc--hHHH---H-hhccCCc----ccc
Confidence 557777766555 45557899999998653 2233310 110 1111 2 3887643 788
Q ss_pred eecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeE
Q 022870 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI 276 (291)
Q Consensus 226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i 276 (291)
.|...|.+.|++..+ .+.+.....|...+++++|.+.+. .+.++.|..+
T Consensus 134 ig~~~gn~viynhgt-sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 134 IGNNAGNIVIYNHGT-SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred ccccccceEEEeccc-hhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 899999999999988 565555656999999999988765 5666666543
No 421
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.38 E-value=4.6 Score=37.77 Aligned_cols=72 Identities=18% Similarity=0.399 Sum_probs=42.1
Q ss_pred cceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCc--ceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH--GIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
.....++|+|.-.++|.|..+|.|+++-...-+... .|.... ++..+.+-. ..........+..+.+|....
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~---~~~~~~~~~~~~~~~~~--~~s~~~~l~~~~~~~~~~~~~ 109 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVG---LHPKQNQINVTRIELLV--GISRNLVLSDDDSLHLWSIKI 109 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEe---ccccccchhhhheeeee--cccccceeecccceeeecccc
Confidence 455778999988899999999999999854322222 222111 133333333 223344445556666676553
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.73 E-value=6.9 Score=34.83 Aligned_cols=76 Identities=4% Similarity=-0.043 Sum_probs=48.6
Q ss_pred cceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCC-CC-ceeeccccccceeEEEee-----cCCC-eeEEecCCC
Q 022870 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GI-PLTAMKVHLEPVLCLSID-----ESCN-GGISGGADQ 274 (291)
Q Consensus 203 ~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~-~~-~~~~~~~h~~~v~~~~~~-----~~~~-~l~s~s~dg 274 (291)
....+++++ ++.. +..++||+++....|.||-.... .+ ....-..|...|-+|+|- +.|. .|++++-.|
T Consensus 162 v~~SaWGLd-Ih~~--~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 162 VGASAWGLD-IHDY--KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred cCCceeEEE-EEec--CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 344677776 6611 12228888888888888866531 11 111112356788899992 3343 788899999
Q ss_pred eEEEEEc
Q 022870 275 KIVLYNL 281 (291)
Q Consensus 275 ~i~vw~~ 281 (291)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9999888
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=5.1 Score=33.27 Aligned_cols=141 Identities=9% Similarity=-0.086 Sum_probs=74.8
Q ss_pred CCCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEE
Q 022870 38 TGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (291)
Q Consensus 38 ~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
..|.+.=|-+.. ....-++..... ++|.++.|++ |...++.--.|.+|.+.+....+...+...+.+........
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~-G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG 117 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDK-GEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG 117 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCC-CceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE
Confidence 334455555432 233334443322 5699999999 98888899999999999985544332222233333333333
Q ss_pred eecccCccceeccCCCCceeeecccCccccccCCCCCC----cccCCCCCcEEEEecCCcCeEEEEeCCCc
Q 022870 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (291)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~d~~i~~wd~~~~ 182 (291)
|....+ ...+.........+.+.+.....+....+.. ..|.++.+-.+++++-..+.+.=+-++++
T Consensus 118 F~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 118 FCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 333333 3334444444555544443322222222222 56778777666666534444444444443
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.66 E-value=2.5 Score=35.55 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=43.8
Q ss_pred EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
++++|+..|.|++||.-. -+.-..+.+-...|..+....+|.++++.+ ...+.+-|+.
T Consensus 575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 899999999999999653 333344666677899999999999887665 4466666654
No 425
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.54 E-value=0.79 Score=23.54 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCCCEEEEe-cCCCeEEEEeCCCCeEEEEEeeec
Q 022870 28 QTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHS 60 (291)
Q Consensus 28 ~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~ 60 (291)
|++++|+++ -.+++|.++|..+++.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 466666554 457899999999888888877643
No 426
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.31 E-value=5.4 Score=32.60 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=44.1
Q ss_pred CCceEEEeecCCCcEEEEEccCC--C----CceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcC
Q 022870 219 QGFVNVLAGYEDGSILVWDIRNP--G----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (291)
Q Consensus 219 ~g~~~l~~g~~dg~i~vwd~~~~--~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~ 282 (291)
.|..+++....+|.+..|-+... + ++++.|.. ...+-.|..+....+|..+-+|.-|.-|+.+
T Consensus 169 ~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 169 TGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp T--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred CCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecC
Confidence 36668888889999998888531 2 24666665 4478889998888889888888777777765
No 427
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=5.2 Score=37.69 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=31.3
Q ss_pred ccccceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
.+.++|..|+.+.....+.+-+..|+|++|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5677999999999999999999999999999987
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.48 E-value=9.7 Score=33.81 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=39.0
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCC
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 97 (291)
-.|+|+++ +|+.+..+.-... ++..+.|+. + ..|+....||++++|++-...
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~--~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG--ELIGMGWSD--D-EELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC--CeeeecccC--C-ceEEEEeccceEEEeecchhh
Confidence 35888885 4666665443332 389999998 6 788889999999999987543
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.25 E-value=4.9 Score=35.23 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=59.4
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc-----CC
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR-----NP 241 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~-----~~ 241 (291)
..+....+.|||.+.+.....-. + ...+.+..+. |.... +|+ .+++.+-.+.|.+|.-. +.
T Consensus 46 V~~~~~~LtIWD~~~~~lE~~~~---------f--~~~~~I~dLD-Wtst~-d~q-siLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 46 VDSSRSELTIWDTRSGVLEYEES---------F--SEDDPIRDLD-WTSTP-DGQ-SILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred EECCCCEEEEEEcCCcEEEEeee---------e--cCCCceeece-eeecC-CCC-EEEEEEcCcEEEEEEccchhhhcC
Confidence 34445789999999887333222 1 1245566666 66543 366 56666667788887542 10
Q ss_pred C---Cceee--ccccc-cceeEEEeecCCCeeEEecCCCeEEEEEc
Q 022870 242 G---IPLTA--MKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 242 ~---~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vw~~ 281 (291)
. .++.. +..|. .+|.+..|-++|.+++.+ ++.+.|++-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 12222 23343 589999999999855443 457888764
No 430
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.19 E-value=0.61 Score=38.31 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=51.2
Q ss_pred CceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEE-EE-eeecCC--cceE-EEEEeecCCCCeEEEEe
Q 022870 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS-SS-WVHSAA--HGIV-SVATGPSIGLNKVISQG 83 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~-~~~~~~--~~v~-~~~~~~~~~~~~l~s~~ 83 (291)
+.+..+..-.++|..+-..|||+.++.-+. .++.++++.+..... .+ ....+. ..|+ ++.... .|.-++.++
T Consensus 211 e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~ 287 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVH 287 (733)
T ss_pred hhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEc
Confidence 334446666778889999999998876655 688899887543211 11 111110 1122 222223 556788899
Q ss_pred CCCeEEEE-ECCCC
Q 022870 84 RDGTVKCW-DIENG 96 (291)
Q Consensus 84 ~dg~i~iw-d~~~~ 96 (291)
.||-|.-| |.+..
T Consensus 288 ~dG~vsQWFdvr~~ 301 (733)
T COG4590 288 EDGLVSQWFDVRRD 301 (733)
T ss_pred CCCceeeeeeeecC
Confidence 99998887 55543
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.92 E-value=6.1 Score=30.52 Aligned_cols=241 Identities=10% Similarity=0.019 Sum_probs=122.1
Q ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCC
Q 022870 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 99 (291)
.-..++-.|||..-+++...+.|---|..+|+....--+.. ..-..|..-| ||...++=+.. -|.-.|-++.+..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G--a~Phgiv~gp--dg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG--ASPHGIVVGP--DGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCC--CCCceEEECC--CCCeeEecCcc-eeEEecCcccceE
Confidence 34667778888777888777777777888887654432222 2256777888 77766664433 4555565554432
Q ss_pred CCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccccccCCCCCC-----cccCCCCCcEEEEecCCcCeE
Q 022870 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----DDVPAEGPKYMAVAGEQLSEV 174 (291)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~d~~i 174 (291)
.-++ ..+..........+.......... ..+..-.++..+.....+..-+. ++..|+|+-.+ +.-.+..|
T Consensus 138 ~f~l-p~~~a~~nlet~vfD~~G~lWFt~--q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwy--aslagnai 212 (353)
T COG4257 138 RFPL-PLEHADANLETAVFDPWGNLWFTG--QIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWY--ASLAGNAI 212 (353)
T ss_pred Eeec-ccccCCCcccceeeCCCccEEEee--ccccceecCcccCceeeeccCCCCCCcceEECCCCcEEE--Eeccccce
Confidence 2111 111111111111111111111111 11111133333333333322222 88999998666 33345678
Q ss_pred EEEeCCCcceeeEecccccCCCCC-CCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEccCCCCceeecccccc
Q 022870 175 EIWDLNTAERCTRLHQNSCGGSPN-FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (291)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~ 253 (291)
-..|..++.. ..+.... . +.. .+.. |+.. .|+ .-++-...+.+..+|-.+..-....|.+...
T Consensus 213 aridp~~~~a-ev~p~P~-----~~~~g-sRri------wsdp--ig~-~wittwg~g~l~rfdPs~~sW~eypLPgs~a 276 (353)
T COG4257 213 ARIDPFAGHA-EVVPQPN-----ALKAG-SRRI------WSDP--IGR-AWITTWGTGSLHRFDPSVTSWIEYPLPGSKA 276 (353)
T ss_pred EEcccccCCc-ceecCCC-----ccccc-cccc------ccCc--cCc-EEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence 8888777632 2222100 1 111 1111 3211 254 5666667788888887763333344555555
Q ss_pred ceeEEEeecCCCeeEEecCCCeEEEEEcCCCce
Q 022870 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTV 286 (291)
Q Consensus 254 ~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~ 286 (291)
.-.++..+..++.-.+=-.-|.|.-+|-++.++
T Consensus 277 rpys~rVD~~grVW~sea~agai~rfdpeta~f 309 (353)
T COG4257 277 RPYSMRVDRHGRVWLSEADAGAIGRFDPETARF 309 (353)
T ss_pred CcceeeeccCCcEEeeccccCceeecCcccceE
Confidence 666777777766555444456666666655443
No 432
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.85 E-value=8.7 Score=32.17 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=25.3
Q ss_pred cceeEEEeecCCCeeEEecCCCeEEEEEcCC
Q 022870 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~ 283 (291)
..|.++..++..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999974
No 433
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.68 E-value=3.8 Score=27.74 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=49.5
Q ss_pred eEEEEcCCCCEEEEecCCCeEEEEeCCCC--------eEEEEEeeecCCcceEEEEEee---cCCCCeEEEEeCCCeEEE
Q 022870 22 TDVCFHQTKPILFAGTTGGELRIWDTVQH--------RTVSSSWVHSAAHGIVSVATGP---SIGLNKVISQGRDGTVKC 90 (291)
Q Consensus 22 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~i~i 90 (291)
..-.|......|+.++.-|.|.|++.... ..+..+... ..|++++-.+ ..+.+.|+.|+.. .|..
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t-~lla 77 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT-SLLA 77 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-eEEE
Confidence 44567776678888889999999987633 234445443 3378876544 2244577777764 7889
Q ss_pred EECCCCCC
Q 022870 91 WDIENGGL 98 (291)
Q Consensus 91 wd~~~~~~ 98 (291)
||+..+.-
T Consensus 78 YDV~~N~d 85 (136)
T PF14781_consen 78 YDVENNSD 85 (136)
T ss_pred EEcccCch
Confidence 99998754
No 434
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.55 E-value=9.6 Score=32.15 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=39.6
Q ss_pred EEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeE--EEEEe---eecCCcceEEEEEee
Q 022870 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSW---VHSAAHGIVSVATGP 72 (291)
Q Consensus 12 ~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~~~ 72 (291)
.++...-..-+.|+|.|+|++|++--..|.|++++..++.. +..+. ..........|+++|
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 33443445678999999998777765569999998654432 21121 111235689999998
No 435
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.18 E-value=0.97 Score=39.24 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=28.8
Q ss_pred cceeEEEEcC----CCCEEEEecCCCeEEEEeCCCCeEEEEEe
Q 022870 19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSSW 57 (291)
Q Consensus 19 ~~v~~l~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 57 (291)
..+..++.+. +..++++-+.|+++|+||+.+++++.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3445555555 66799999999999999999999976653
No 436
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.98 E-value=7.4 Score=29.96 Aligned_cols=108 Identities=8% Similarity=0.012 Sum_probs=57.5
Q ss_pred cccCCCCCcEEEEec-CCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCc
Q 022870 154 DDVPAEGPKYMAVAG-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~ 232 (291)
.++++++..+.++.. .....++++.. +........ +. ....-. |.++ +. ..+....+..
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-------g~------~l~~PS-~d~~---g~-~W~v~~~~~~ 88 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-------GG------SLTRPS-WDPD---GW-VWTVDDGSGG 88 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-------CC------cccccc-ccCC---CC-EEEEEcCCCc
Confidence 778999987776651 21234555543 333332211 11 222233 8877 43 4445455556
Q ss_pred EEEEE-ccCCCCceeecccc--ccceeEEEeecCCCeeEEec---CCCeEEEEEc
Q 022870 233 ILVWD-IRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGG---ADQKIVLYNL 281 (291)
Q Consensus 233 i~vwd-~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s---~dg~i~vw~~ 281 (291)
.+++. ..+.......+... .+.|+.+.++|||..++... .++.|.+=-+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 66663 33312111122211 12899999999999987665 3567766544
No 437
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.40 E-value=1.8 Score=22.11 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=25.0
Q ss_pred CceEEEeecCCCcEEEEEccCCCCceeeccccccceeEEEe
Q 022870 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI 260 (291)
Q Consensus 220 g~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~ 260 (291)
++..+++...++.|.++|..+ .+.+..+.. ......++|
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTAT-NKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCC-CeEEEEEEC-CCCCceEEe
Confidence 443555566789999999987 676666654 233344444
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.79 E-value=5.6 Score=26.96 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=63.4
Q ss_pred cCCCCCcEEEEecCCcCeEEEEeCCCcc--------eeeEecccccCCCCCCCCCcceeeeeE--EEecCCCCCCceEEE
Q 022870 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAE--------RCTRLHQNSCGGSPNFSSKGRGMCMAV--QAYLPSKSQGFVNVL 225 (291)
Q Consensus 156 ~~~~~~~~~~~~g~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~g~~~l~ 225 (291)
|....+.+.+++ .-|.|.|++..... .+..+. ....+.++ ..|.|+. ++-.|+
T Consensus 6 fDG~~pcL~~aT--~~gKV~IH~ph~~~~~~~~~~~~i~~LN-------------in~~italaaG~l~~~~--~~D~Ll 68 (136)
T PF14781_consen 6 FDGVHPCLACAT--TGGKVFIHNPHERGQRTGRQDSDISFLN-------------INQEITALAAGRLKPDD--GRDCLL 68 (136)
T ss_pred eCCCceeEEEEe--cCCEEEEECCCccccccccccCceeEEE-------------CCCceEEEEEEecCCCC--CcCEEE
Confidence 445555555443 35899999876443 233333 12223333 2366642 222677
Q ss_pred eecCCCcEEEEEccCCCCceeeccccccceeEEEe----ecCCCeeEEecCCCeEEEEEcCCCceeee
Q 022870 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI----DESCNGGISGGADQKIVLYNLDHSTVSHC 289 (291)
Q Consensus 226 ~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~----~~~~~~l~s~s~dg~i~vw~~~~~~~~~~ 289 (291)
.|+.. .|..||+.+ ..-+.. +.-.+.|+++.+ .....+++.| .+..|.=||.+..+..=+
T Consensus 69 iGt~t-~llaYDV~~-N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 69 IGTQT-SLLAYDVEN-NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred Eeccc-eEEEEEccc-Cchhhh-hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 77654 799999987 332222 222466788877 2234444444 477788888777665533
No 439
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.60 E-value=10 Score=29.82 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=49.0
Q ss_pred ecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCC---CCCCceEEEeecCCCcEEEEEccCCCC
Q 022870 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS---KSQGFVNVLAGYEDGSILVWDIRNPGI 243 (291)
Q Consensus 167 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~g~~~l~~g~~dg~i~vwd~~~~~~ 243 (291)
.|..-|.|-+||+. ++.++.+... +. -...+.++ ..|. .-.|. +|+---.||+|..||..+ ++
T Consensus 217 ~G~G~G~VdvFd~~-G~l~~r~as~------g~----LNaPWG~a-~APa~FG~~sg~-lLVGNFGDG~InaFD~~s-G~ 282 (336)
T TIGR03118 217 AGAGLGYVNVFTLN-GQLLRRVASS------GR----LNAPWGLA-IAPESFGSLSGA-LLVGNFGDGTINAYDPQS-GA 282 (336)
T ss_pred cCCCcceEEEEcCC-CcEEEEeccC------Cc----ccCCceee-eChhhhCCCCCC-eEEeecCCceeEEecCCC-Cc
Confidence 45556899999986 5677777531 22 11223332 3331 00143 666667799999999988 77
Q ss_pred ceeeccccc------cceeEEEe
Q 022870 244 PLTAMKVHL------EPVLCLSI 260 (291)
Q Consensus 244 ~~~~~~~h~------~~v~~~~~ 260 (291)
.+..+.... .-++.|+|
T Consensus 283 ~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 283 QLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred eeeeecCCCCCeEEecCeEEeee
Confidence 666666433 24678888
No 440
>PHA03098 kelch-like protein; Provisional
Probab=88.45 E-value=16 Score=31.75 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=32.7
Q ss_pred CCCEEEEecCC-----CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCC------CeEEEEECCCCC
Q 022870 29 TKPILFAGTTG-----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD------GTVKCWDIENGG 97 (291)
Q Consensus 29 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 97 (291)
++.+.+.||.+ ..+..||..+.+-...-..... ..-.+++.. ++..++.||.+ ..+..||..+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-CccceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 45566777765 3467788766543221111110 001122222 44666666632 357788887765
Q ss_pred C
Q 022870 98 L 98 (291)
Q Consensus 98 ~ 98 (291)
.
T Consensus 418 W 418 (534)
T PHA03098 418 W 418 (534)
T ss_pred e
Confidence 4
No 441
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.44 E-value=1.8 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEE
Q 022870 32 ILFAGTTGGELRIWDTVQHRTVSS 55 (291)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~ 55 (291)
.++.++.+|.+...|.++|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 678888999999999998887654
No 442
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.78 E-value=11 Score=29.21 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=39.4
Q ss_pred CEEEEecCCCeEEEEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 31 PILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
..|+.+ ...+|.+|..... +..+.+... +.+.+++|.+ +.++.|..+ ...+.|+.++..
T Consensus 106 ~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~~----~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 106 RRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFLG----NKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred eEEEEE-ECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEeC----CEEEEEeCC-ceEEEecCCCCc
Confidence 344444 4458998887653 344555444 5589999987 677777755 478899987654
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=17 Score=30.99 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=51.5
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEe---------CCCCeEEEEEe---------eecCCcceEEEEEeecC--CCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWD---------TVQHRTVSSSW---------VHSAAHGIVSVATGPSI--GLN 77 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd---------~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~--~~~ 77 (291)
.-.|..+..++.|..++-.|.+|.+.++= +++|+..-..+ .....-.+...+|+|.. | .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D-~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD-P 181 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC-c
Confidence 34678889999999999999999765542 12343221111 11111346788899843 2 5
Q ss_pred eEEEEeCCCeEEEEECCCCCC
Q 022870 78 KVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 78 ~l~s~~~dg~i~iwd~~~~~~ 98 (291)
.|+.-+.|..+++||+.....
T Consensus 182 hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eEEEEecCcEEEEEecCCcch
Confidence 666777788999999886643
No 444
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=87.33 E-value=14 Score=33.44 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=53.9
Q ss_pred CceEEecCCccceeEEEEc----CCCC--EEEEecCCCeEE-EEeCCCC-----eEEEEEeeecCCcceEEEEEeecCCC
Q 022870 9 DPVAVLRGHRASVTDVCFH----QTKP--ILFAGTTGGELR-IWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGL 76 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~----~~~~--~l~s~~~dg~v~-iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~ 76 (291)
+|+....+ ....+.++.. .++. .|+.|+.+|+|. +-.+.+. ..+.+++.-...++|..|..++ ..
T Consensus 399 ~P~l~~~~-~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~--~~ 475 (737)
T KOG3611|consen 399 RPLLVKTG-DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSS--KR 475 (737)
T ss_pred CceEEecc-cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecc--cC
Confidence 56666665 6677777776 3444 567899999863 3333331 1455666555557799999999 66
Q ss_pred CeEEEEeCCCeEEE
Q 022870 77 NKVISQGRDGTVKC 90 (291)
Q Consensus 77 ~~l~s~~~dg~i~i 90 (291)
..|++|+.+|.+++
T Consensus 476 ~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 476 GSLYVGSRSGVVQV 489 (737)
T ss_pred CeEEEEccCcEEEe
Confidence 78999999886654
No 445
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.95 E-value=21 Score=31.42 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=39.2
Q ss_pred CCCEEEEecCC------CeEEEEeCCCCeEEE--EEeeecCCcceEEEEEeecCCCCeEEEEeCCC-----eEEEEECCC
Q 022870 29 TKPILFAGTTG------GELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGRDG-----TVKCWDIEN 95 (291)
Q Consensus 29 ~~~~l~s~~~d------g~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~ 95 (291)
++...++||.| .++..||..+.+-.. .+..... =.+++.. +|...+.||.|| ++-.||.++
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~---~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS---DFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc---cceeEEE---CCEEEEEeccccccccccEEEecCCC
Confidence 34577889888 357778877655322 1221211 1222222 557788899886 477899888
Q ss_pred CCCC
Q 022870 96 GGLS 99 (291)
Q Consensus 96 ~~~~ 99 (291)
.+..
T Consensus 406 ~~W~ 409 (571)
T KOG4441|consen 406 NKWT 409 (571)
T ss_pred Cccc
Confidence 7653
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.88 E-value=2.7 Score=31.06 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=37.5
Q ss_pred EEEeecCCCcEEEEEccC-CCCceeeccccccceeEEEeecCCCeeEEecCC
Q 022870 223 NVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
.|+.+...+.|.+|++.+ ..+++..+.. -+.|..+.++..|.+|+|-=.+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 555557778899999983 2445556654 5889999999999999986543
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.81 E-value=8.8 Score=27.53 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=25.1
Q ss_pred ceEEEEEeecC----CCCeEEEEeCCCeEEEEECCCC
Q 022870 64 GIVSVATGPSI----GLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 64 ~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
.|.+++|+|.- .+-+|++...++.|.+|.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 58999999921 1236788899999999987754
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.06 E-value=0.13 Score=42.32 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=49.7
Q ss_pred eeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEE-EEeCCCeEEEEECCCCC
Q 022870 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGG 97 (291)
Q Consensus 21 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~ 97 (291)
-....|-+.+..++.++.+..|..|| +.++........ .....++|.- +++.++ .+-..+.+.+||+.+..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~t---g~aldm~wDk--egdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNPT---GKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhh-hhcceecccCCc---hhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhh
Confidence 34456777766788888899999999 445554443322 3367888887 666554 56678899999998754
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.04 E-value=0.97 Score=40.49 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=44.6
Q ss_pred ceeEEEEcC---CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEE-----------EeecCCCCeEEEEeCC
Q 022870 20 SVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA-----------TGPSIGLNKVISQGRD 85 (291)
Q Consensus 20 ~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~~l~s~~~d 85 (291)
.+.-+.|.| +..++..+-.++++++-+.+.... ..+..|... +..++ .+| ||..+++++.|
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~--~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~d 256 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQR--VTDMAFFAEGVLKLASLSP--DGTVFAWAISD 256 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCC--cccHHHHhhchhhheeeCC--CCcEEEEeecC
Confidence 334455554 556777788888888877654321 233345422 33333 577 88888888888
Q ss_pred CeEEEEECC
Q 022870 86 GTVKCWDIE 94 (291)
Q Consensus 86 g~i~iwd~~ 94 (291)
|.++.|.+-
T Consensus 257 G~v~f~Qiy 265 (1283)
T KOG1916|consen 257 GSVGFYQIY 265 (1283)
T ss_pred Cccceeeee
Confidence 888888754
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.03 E-value=12 Score=27.80 Aligned_cols=59 Identities=10% Similarity=0.219 Sum_probs=40.5
Q ss_pred EEEEecCCCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC------eEEEE-ECCC
Q 022870 32 ILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG------TVKCW-DIEN 95 (291)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iw-d~~~ 95 (291)
.|+.+...+.|.+|++.+ .+.+..+..- +.|..+.++. .|++|+|--.+. .+|+| |++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 444445667899999883 3455556544 4599999999 899999865432 56665 4443
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=19 Score=33.09 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=44.1
Q ss_pred EEcCCCCEEEEecCCCeEEEEeCCCCeE---EEE------EeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 25 CFHQTKPILFAGTTGGELRIWDTVQHRT---VSS------SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 25 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
++..-|+.++.|+.||.+.+|.+..... ... +..+-...+|..+...+ .-..++. -.|+.|.++++.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~--~~~~ll~-l~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCA--SLELLLI-LSDSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcc--hhcchhe-ecCCcceeeecCc
Confidence 3444677999999999999999865421 111 11111225577777777 3233333 4467788888876
Q ss_pred CCC
Q 022870 96 GGL 98 (291)
Q Consensus 96 ~~~ 98 (291)
.+.
T Consensus 98 ~~~ 100 (877)
T KOG2063|consen 98 LEP 100 (877)
T ss_pred ccc
Confidence 654
No 452
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.65 E-value=26 Score=31.34 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=40.5
Q ss_pred ceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEE--E--eeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--S--WVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 10 ~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
++.++.....++-.+.|+.+. .|+.-..||++.+|++- |+.+.. + +... ..|..+.+.. +|-.+++.+
T Consensus 75 lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~--~~I~ec~~f~--~GVavlt~~ 146 (829)
T KOG2280|consen 75 LLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQM--SDIVECRFFH--NGVAVLTVS 146 (829)
T ss_pred chHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhccccccccccc--CceeEEEEec--CceEEEecC
Confidence 333333334588899999877 45566899999999975 333333 1 2222 2366676666 544444433
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.59 E-value=4.8 Score=33.40 Aligned_cols=87 Identities=9% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEE--EEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 5 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
|-|.-++..-...+++|.++.|++|.+.||.--.|.+|.+++....+.. ...+.......|....|+. . ..++-.
T Consensus 53 pndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i 129 (657)
T KOG2377|consen 53 PNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--S-TEIAFI 129 (657)
T ss_pred CCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--C-eeEEEE
Confidence 3333334333346779999999999999999999999999997432221 1111112224488999987 4 556655
Q ss_pred eCCCeEEEEECCC
Q 022870 83 GRDGTVKCWDIEN 95 (291)
Q Consensus 83 ~~dg~i~iwd~~~ 95 (291)
...| +-+|....
T Consensus 130 ~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 130 TDQG-IEFYQVLP 141 (657)
T ss_pred ecCC-eEEEEEch
Confidence 5544 56665543
No 454
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=85.27 E-value=2.6 Score=19.51 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=20.5
Q ss_pred cceeEEEeecCCCeeEEecCCCeEEEEE
Q 022870 253 EPVLCLSIDESCNGGISGGADQKIVLYN 280 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg~i~vw~ 280 (291)
..|.+++..+. +++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence 35778887777 888888889999874
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.82 E-value=6.9 Score=32.55 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=42.6
Q ss_pred EEEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
-+++-+.+|++.++.... .+++..-.. -..+.-++++|++.+|++- ..|.++++.+++.
T Consensus 330 gF~~l~~~G~L~~f~st~-~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 330 GFYSLYRNGTLQSFYSTS-EKLLLFERA-YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred eEEEEcCCCceeeeeccc-Ccceehhhh-hcCcceeeeCcccchheee-cCCceEEEEecCC
Confidence 788888999999988765 444433332 2356678899999988875 3678999988764
No 456
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=84.80 E-value=2.8 Score=19.45 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=13.7
Q ss_pred eeEEEeecCCCeeEEecCCCeEEE
Q 022870 255 VLCLSIDESCNGGISGGADQKIVL 278 (291)
Q Consensus 255 v~~~~~~~~~~~l~s~s~dg~i~v 278 (291)
..+++.+++|+++++=+....|++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 345666666665555555555554
No 457
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.67 E-value=17 Score=28.44 Aligned_cols=170 Identities=9% Similarity=0.072 Sum_probs=90.0
Q ss_pred cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (291)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
..+.++.|+| +.+.|++......-.+|=-..++.+.......-..+..
T Consensus 86 ~nvS~LTynp--~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~------------------------------ 133 (316)
T COG3204 86 ANVSSLTYNP--DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPET------------------------------ 133 (316)
T ss_pred ccccceeeCC--CcceEEEecCCCceEEEEecCCceEEEecccccCChhH------------------------------
Confidence 3399999999 88888887777766666555565544111111000000
Q ss_pred cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCce
Q 022870 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~ 222 (291)
+++..+| .++++-..++.+.++.+.....+....... .++ +.....+.-.-.++ |.|.. +
T Consensus 134 -----------Ieyig~n--~fvi~dER~~~l~~~~vd~~t~~~~~~~~~-i~L-~~~~k~N~GfEGlA-~d~~~---~- 193 (316)
T COG3204 134 -----------IEYIGGN--QFVIVDERDRALYLFTVDADTTVISAKVQK-IPL-GTTNKKNKGFEGLA-WDPVD---H- 193 (316)
T ss_pred -----------eEEecCC--EEEEEehhcceEEEEEEcCCccEEeccceE-Eec-cccCCCCcCceeee-cCCCC---c-
Confidence 3344444 344467778888888776553322222100 000 00011122223344 88873 3
Q ss_pred EEEeecCCCcEEEEEccCCCCce--eeccccc-------cceeEEEeec-CCCeeEEecCCCeEEEEEcCCC
Q 022870 223 NVLAGYEDGSILVWDIRNPGIPL--TAMKVHL-------EPVLCLSIDE-SCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 223 ~l~~g~~dg~i~vwd~~~~~~~~--~~~~~h~-------~~v~~~~~~~-~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
.|..+-+-.-+.||........+ .....+. ..|.++.|++ ++.+|+-+.+++.+.-.|....
T Consensus 194 ~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 194 RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 67777777777777766311111 1111221 3577888864 5556666667777777766544
No 458
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.47 E-value=29 Score=30.85 Aligned_cols=86 Identities=10% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCCCCceEEec-CCccceeEEEEcCC---CCEEEEecCCCe-EEEEeCCCC-----------e--EEEEEeeecCCcceE
Q 022870 5 PPPPDPVAVLR-GHRASVTDVCFHQT---KPILFAGTTGGE-LRIWDTVQH-----------R--TVSSSWVHSAAHGIV 66 (291)
Q Consensus 5 ~~~~~~~~~l~-~h~~~v~~l~~~~~---~~~l~s~~~dg~-v~iwd~~~~-----------~--~~~~~~~~~~~~~v~ 66 (291)
|.| +.+..+. ..+.-|.||..... ....+.|-.++. -++-.+..+ + ....++. . +.|.
T Consensus 58 PTP-KLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl-~--~kvv 133 (670)
T PF10395_consen 58 PTP-KLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL-D--DKVV 133 (670)
T ss_pred CCc-ceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc-c--cceE
Confidence 444 6776665 35667888876542 224444534433 333322221 1 1122222 2 4599
Q ss_pred EEEEeecCCCCeEEEEeCCCeEEEEECCCC
Q 022870 67 SVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (291)
Q Consensus 67 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 96 (291)
.+.|.+ ++..+++.-.+|.|.+||...+
T Consensus 134 ~Ik~~~--~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 134 GIKFSS--DGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred EEEEec--CCCEEEEEEcCCcEEEEecccc
Confidence 999998 8899999999999999999443
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=12 Score=35.41 Aligned_cols=87 Identities=10% Similarity=0.052 Sum_probs=49.9
Q ss_pred CCCCceEEecCCccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCC------CeE
Q 022870 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL------NKV 79 (291)
Q Consensus 6 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~l 79 (291)
.|++.+..+. |...=+.+-+-|.=...- .+.|+.+.+|+.+++.....+.+-.+. |..+..-....| .++
T Consensus 67 IP~el~eq~~-~~~~~~~mGiFpeI~RaW-iTiDn~L~lWny~~~~e~~~~d~~sht--Il~V~LvkPkpgvFv~~Iqhl 142 (1311)
T KOG1900|consen 67 IPDELLEQFS-NIECKTDMGIFPEIGRAW-ITIDNNLFLWNYESDNELAEYDGLSHT--ILKVGLVKPKPGVFVPEIQHL 142 (1311)
T ss_pred CCHHHHHHhc-CcceeeeeccchhhcceE-EEeCCeEEEEEcCCCCccccccchhhh--heeeeeecCCCCcchhhhhee
Confidence 4444444444 444445555555322222 235789999999998777777776655 777765321111 344
Q ss_pred EEEeCCCeEEEEECCCC
Q 022870 80 ISQGRDGTVKCWDIENG 96 (291)
Q Consensus 80 ~s~~~dg~i~iwd~~~~ 96 (291)
+..+.--.|.++-+.-.
T Consensus 143 LvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 143 LVVATPVEIVILGVSFD 159 (1311)
T ss_pred EEecccceEEEEEEEec
Confidence 44444456777766543
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.80 E-value=23 Score=29.14 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=57.1
Q ss_pred EEEEecCCcCeEEEEeCC---Cc----ceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEE
Q 022870 163 YMAVAGEQLSEVEIWDLN---TA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (291)
Q Consensus 163 ~~~~~g~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~v 235 (291)
+.+.....+|.+..|-+. .+ +.+++|.. ...+-.+. .... .| +|+.|-++.-|.-
T Consensus 172 ~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------------~sQ~EGCV-VDDe--~g--~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 172 LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------------GSQPEGCV-VDDE--TG--RLYVGEEDVGIWR 233 (381)
T ss_dssp EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEE-EETT--TT--EEEEEETTTEEEE
T ss_pred EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------------CCcceEEE-Eecc--cC--CEEEecCccEEEE
Confidence 333345567988877664 22 34566652 11122222 3332 13 7899999988888
Q ss_pred EEccCCC----Cceeeccc--cccceeEEEe--ec--CCCeeEEecCCCeEEEEEcCC
Q 022870 236 WDIRNPG----IPLTAMKV--HLEPVLCLSI--DE--SCNGGISGGADQKIVLYNLDH 283 (291)
Q Consensus 236 wd~~~~~----~~~~~~~~--h~~~v~~~~~--~~--~~~~l~s~s~dg~i~vw~~~~ 283 (291)
|+.+-.. ..+....+ ....|-.|+. .+ +|-+|+|.=.+++..||+.+.
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8886311 22222222 3457778877 23 344455555678999999886
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.58 E-value=39 Score=31.66 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=64.5
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcE
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i 233 (291)
.+..|...++++..| ..+++||+...+.++..+. .+ ....+..++ +.- . .+++|...-.+
T Consensus 939 ~Ai~~f~~~~LagvG---~~l~~YdlG~K~lLRk~e~-------k~---~p~~Is~iq-t~~-----~-RI~VgD~qeSV 998 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVG---RFLRLYDLGKKKLLRKCEL-------KF---IPNRISSIQ-TYG-----A-RIVVGDIQESV 998 (1205)
T ss_pred eEEeccCCEEEEecc---cEEEEeeCChHHHHhhhhh-------cc---CceEEEEEe-ecc-----e-EEEEeeccceE
Confidence 567788777775433 6899999998887776653 11 345666666 542 2 67777766666
Q ss_pred EEEEccCCCCceeecccc--ccceeEEEe-ecCCCeeEEecCCCeEEEEEc
Q 022870 234 LVWDIRNPGIPLTAMKVH--LEPVLCLSI-DESCNGGISGGADQKIVLYNL 281 (291)
Q Consensus 234 ~vwd~~~~~~~~~~~~~h--~~~v~~~~~-~~~~~~l~s~s~dg~i~vw~~ 281 (291)
.++-.+...+.+..+... ...|+.+.+ +.+ .+|.+..=|.+.+-.+
T Consensus 999 ~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEEEecCCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEEC
Confidence 665554434555555432 345666665 433 4566655566666544
No 462
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.06 E-value=25 Score=28.95 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=16.3
Q ss_pred cCCCCCcEEEEe---cCCcCeEEEEeCCCcceee
Q 022870 156 VPAEGPKYMAVA---GEQLSEVEIWDLNTAERCT 186 (291)
Q Consensus 156 ~~~~~~~~~~~~---g~~d~~i~~wd~~~~~~~~ 186 (291)
|.|+|..+.... +..+..|.-+|+.+++...
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 788888776543 3445578888888876543
No 463
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.89 E-value=34 Score=30.45 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=28.6
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQ 49 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 49 (291)
.+.|-.+.|.+++..++....+|.|.+||...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 57789999999999999999999999999943
No 464
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.75 E-value=4.6 Score=20.30 Aligned_cols=31 Identities=6% Similarity=0.194 Sum_probs=19.2
Q ss_pred cCCccceeEEEEcCCCCEEEEe-cCC--CeEEEE
Q 022870 15 RGHRASVTDVCFHQTKPILFAG-TTG--GELRIW 45 (291)
Q Consensus 15 ~~h~~~v~~l~~~~~~~~l~s~-~~d--g~v~iw 45 (291)
......-....|+|||+.|+-. ..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3345567888999999877654 444 555554
No 465
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.47 E-value=9.6 Score=23.84 Aligned_cols=42 Identities=19% Similarity=0.034 Sum_probs=27.7
Q ss_pred cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe
Q 022870 37 TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (291)
Q Consensus 37 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~ 83 (291)
..+|.+.-||..+++....+.+-.- -..++.++ |+..++.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~f---pNGVals~--d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYF---PNGVALSP--DESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESS---EEEEEE-T--TSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCc---cCeEEEcC--CCCEEEEEe
Confidence 3468899999988876555555432 68999999 888666543
No 466
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=23 Score=27.89 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=83.6
Q ss_pred eEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCccc
Q 022870 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETV 144 (291)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (291)
+..+.++. ++.+.+..+.-+++.|+.+...... +-.+.......+
T Consensus 89 ~~Dv~vse----~yvyvad~ssGL~IvDIS~P~sP~~-~~~lnt~gyayg------------------------------ 133 (370)
T COG5276 89 FADVRVSE----EYVYVADWSSGLRIVDISTPDSPTL-IGFLNTDGYAYG------------------------------ 133 (370)
T ss_pred hheeEecc----cEEEEEcCCCceEEEeccCCCCcce-eccccCCceEEE------------------------------
Confidence 56777766 6788888888899999998764321 111111111111
Q ss_pred cccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEE
Q 022870 145 DTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l 224 (291)
+.-.|++..+ + ..|.-..++|+.+.+.....- .-....+....+. .+ |. +-
T Consensus 134 -----------v~vsGn~aYV-a-dlddgfLivdvsdpssP~lag---------rya~~~~d~~~v~-IS-----Gn-~A 184 (370)
T COG5276 134 -----------VYVSGNYAYV-A-DLDDGFLIVDVSDPSSPQLAG---------RYALPGGDTHDVA-IS-----GN-YA 184 (370)
T ss_pred -----------EEecCCEEEE-e-eccCcEEEEECCCCCCceeee---------eeccCCCCceeEE-Ee-----cC-eE
Confidence 2233444443 2 224446677776654322111 0000111112222 44 44 77
Q ss_pred EeecCCCcEEEEEccCCCCceeecccccc-ceeEEEeecCCCeeEEecCCCeEEEEEcCCCc
Q 022870 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (291)
Q Consensus 225 ~~g~~dg~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~ 285 (291)
..+..|+-+.+-|+.++..|...-.-..+ .+.++..+++..+++... . -+.+-|.++.+
T Consensus 185 YvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-e-gvlivd~s~~s 244 (370)
T COG5276 185 YVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-E-GVLIVDVSGPS 244 (370)
T ss_pred EEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-c-ceEEEecCCCC
Confidence 77788999999999987666543332233 678888888866555442 2 35555554443
No 467
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.07 E-value=9.4 Score=34.06 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=55.8
Q ss_pred CceEEecCCccceeEEEEc--CCCCEEEEecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEEeecCC---CC-eEEE
Q 022870 9 DPVAVLRGHRASVTDVCFH--QTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIG---LN-KVIS 81 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~--~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~---~~-~l~s 81 (291)
+|...++. ...+++++++ ...++||.++....|.||-..... .......+.....|-+|+|.+... |. .+++
T Consensus 155 ~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a 233 (717)
T PF08728_consen 155 KPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVA 233 (717)
T ss_pred CCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEE
Confidence 34555553 3479999999 778899999888889888654321 111111112223499999988431 22 6778
Q ss_pred EeCCCeEEEEEC
Q 022870 82 QGRDGTVKCWDI 93 (291)
Q Consensus 82 ~~~dg~i~iwd~ 93 (291)
++-.|.+.+|++
T Consensus 234 ~dI~G~v~~~~I 245 (717)
T PF08728_consen 234 TDISGEVWTFKI 245 (717)
T ss_pred EeccCcEEEEEE
Confidence 999999999887
No 468
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=32 Score=29.51 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=25.9
Q ss_pred ceeEEEeecCC---CeeEEecCCCeEEEEEcCCCcee
Q 022870 254 PVLCLSIDESC---NGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 254 ~v~~~~~~~~~---~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
.+...+|+|+. ..|..-+.|+.||+||+...+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 56778898865 45666778999999999876544
No 469
>PHA02790 Kelch-like protein; Provisional
Probab=81.71 E-value=33 Score=29.46 Aligned_cols=66 Identities=11% Similarity=0.015 Sum_probs=32.8
Q ss_pred CCCEEEEecCC--CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCC---eEEEEECCCCCC
Q 022870 29 TKPILFAGTTG--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG---TVKCWDIENGGL 98 (291)
Q Consensus 29 ~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~ 98 (291)
++...+.||.+ ..+..||..+++-...-....... -.+++. - ++...+.||.++ .+..||.++++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRC-NPAVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCc-ccEEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 55566777754 357778866543322111111100 112222 2 446667777553 466788776644
No 470
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=81.64 E-value=5.1 Score=20.13 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=23.3
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEeee
Q 022870 32 ILFAGTTGGELRIWDTVQHRTVSSSWVH 59 (291)
Q Consensus 32 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 59 (291)
.++.++.||.|.-.|.++|+.+..++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4566799999999999999998887643
No 471
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=80.64 E-value=20 Score=27.54 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=38.4
Q ss_pred eEEEeecCCCcEEEEEccCCCCceeeccccccceeEEE----ee-cCCCeeEEecCCCeEEEE
Q 022870 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS----ID-ESCNGGISGGADQKIVLY 279 (291)
Q Consensus 222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~----~~-~~~~~l~s~s~dg~i~vw 279 (291)
..|+.|+++|.|+|.|.+. ...+..++-..-++ .+. |+ -+.+ ++.++.||.|++-
T Consensus 196 scLViGTE~~~i~iLd~~a-f~il~~~~lpsvPv-~i~~~G~~devdyR-I~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQA-FTILKQVQLPSVPV-FISVSGQYDEVDYR-IVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchh-heeEEEEecCCCce-EEEEEeeeeccceE-EEEEeCCCEEEEE
Confidence 3899999999999999886 56666666544443 222 34 4544 6666789988764
No 472
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=79.05 E-value=7.9 Score=32.75 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=44.0
Q ss_pred CCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
.| ++|.|+..|.|++||--.-+....+.+-. ..|..+.... +|..+++.+. ..+.+-|+.-
T Consensus 573 sG-yIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~idvta--~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 573 SG-YIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTA--NGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred Cc-eEEEecCCCceeeehhhcchhhhcCcccc--cceeeeEeec--CCcEEEEeec-ceEEEEeccc
Confidence 44 99999999999999954333333344445 4499999998 8888877776 4777888753
No 473
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.74 E-value=35 Score=28.01 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=33.6
Q ss_pred eeeEEEecCCCCCCceEEEeecC------------------CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeE
Q 022870 207 CMAVQAYLPSKSQGFVNVLAGYE------------------DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI 268 (291)
Q Consensus 207 ~~~~~~~~p~~~~g~~~l~~g~~------------------dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 268 (291)
...+. |.|+ |..|+..|+. .|.|.-+|... + .+..+...-.....++|+++|.+++
T Consensus 126 ~~~l~-~gpD---G~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg-~-~~e~~a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 126 LNSLA-WGPD---GWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG-G-KLRVVAHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ccCce-ECCC---CCEEEecccCCCceeccCCCccCcccccCceEEEEecCC-C-eEEEEecCcCCCccceECCCCCEEE
Confidence 44454 8887 6545555532 14455555553 2 2333332234567899999998776
Q ss_pred Eec
Q 022870 269 SGG 271 (291)
Q Consensus 269 s~s 271 (291)
+-.
T Consensus 200 tdn 202 (367)
T TIGR02604 200 CDN 202 (367)
T ss_pred Ecc
Confidence 644
No 474
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=78.42 E-value=29 Score=26.79 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=48.5
Q ss_pred CccceeEEEEcC----C---CCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecC-CCCeEEEEeCCCeE
Q 022870 17 HRASVTDVCFHQ----T---KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSI-GLNKVISQGRDGTV 88 (291)
Q Consensus 17 h~~~v~~l~~~~----~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i 88 (291)
+...|+||+--. + -..|+.|..+|.|.|.|.+....+..++...-+ +.=.+..-.+ -.-+++.++.||.|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvP--v~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVP--VFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCc--eEEEEEeeeeccceEEEEEeCCCEE
Confidence 456688877533 1 247899999999999998887877777766533 4222221110 23578889999998
Q ss_pred EEE
Q 022870 89 KCW 91 (291)
Q Consensus 89 ~iw 91 (291)
++-
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 764
No 475
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=78.40 E-value=7.1 Score=19.80 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=14.0
Q ss_pred eeEEecCCCeEEEEEcCC
Q 022870 266 GGISGGADQKIVLYNLDH 283 (291)
Q Consensus 266 ~l~s~s~dg~i~vw~~~~ 283 (291)
.|+.++.||.++.+|.++
T Consensus 23 ~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 23 RVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEE-TTSEEEEEETT-
T ss_pred EEEEEcCCCEEEEEeCCC
Confidence 688888899999999764
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.40 E-value=8.6 Score=30.10 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=37.7
Q ss_pred CCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEec------CCCeEEEEEcCCCce
Q 022870 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG------ADQKIVLYNLDHSTV 286 (291)
Q Consensus 230 dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s------~dg~i~vw~~~~~~~ 286 (291)
-..|++||..+ .+-..--.+-.+.|++|.|..+.+++++|. ....+..||+.+...
T Consensus 15 C~~lC~yd~~~-~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDN-SQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCC-CEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 34699999876 332222223467899999986666777665 356788898877653
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.16 E-value=34 Score=27.55 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=61.8
Q ss_pred cccCCCCCcEEEEecCCc------CeEEEEeCCCcceeeEecccccCCCCC---CCCCcceeeeeEEEecCCCCCCceEE
Q 022870 154 DDVPAEGPKYMAVAGEQL------SEVEIWDLNTAERCTRLHQNSCGGSPN---FSSKGRGMCMAVQAYLPSKSQGFVNV 224 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~g~~~l 224 (291)
+++.+++..++ +...+ ..|+.+|.. ++....+..+....... .....+.-.-+++ ++|+ |+ .|
T Consensus 90 i~~~~~g~~~i--s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la-~~~d---G~-~l 161 (326)
T PF13449_consen 90 IAVPPDGSFWI--SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA-VSPD---GR-TL 161 (326)
T ss_pred eEEecCCCEEE--EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE-ECCC---CC-EE
Confidence 66766665443 55556 788889877 66655553211000000 1112334455665 8988 44 45
Q ss_pred EeecC-----CC--c-------EEE--EEccCCCCceee----ccc-----cccceeEEEeecCCCeeEEe-----cCCC
Q 022870 225 LAGYE-----DG--S-------ILV--WDIRNPGIPLTA----MKV-----HLEPVLCLSIDESCNGGISG-----GADQ 274 (291)
Q Consensus 225 ~~g~~-----dg--~-------i~v--wd~~~~~~~~~~----~~~-----h~~~v~~~~~~~~~~~l~s~-----s~dg 274 (291)
+++.+ |+ . +++ ||..+.+.+... +.. ....|..+.+-+++++|+-= +...
T Consensus 162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGN 241 (326)
T ss_pred EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccc
Confidence 55433 22 1 444 454442323322 222 34578889998888766431 1234
Q ss_pred eEEEEEcC
Q 022870 275 KIVLYNLD 282 (291)
Q Consensus 275 ~i~vw~~~ 282 (291)
.++|+.+.
T Consensus 242 ~~ri~~v~ 249 (326)
T PF13449_consen 242 YKRIYRVD 249 (326)
T ss_pred eEEEEEEE
Confidence 55555544
No 478
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=77.11 E-value=15 Score=22.83 Aligned_cols=31 Identities=10% Similarity=-0.001 Sum_probs=24.1
Q ss_pred cceeEEEeecCCCeeEEe-cCCCeEEEEEcCC
Q 022870 253 EPVLCLSIDESCNGGISG-GADQKIVLYNLDH 283 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~-s~dg~i~vw~~~~ 283 (291)
...++|.++|++++|..+ ...+.|++++.+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 456899999998887544 4578999998764
No 479
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=75.50 E-value=54 Score=28.52 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=38.7
Q ss_pred CeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 40 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
+.|.+.| ++-+.+..+.+-...+.|.++.|-- +.-+++|=-.=--+.+.|+...+.
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~G--d~~Y~VTFrqvDPLfviDLsdP~~ 359 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMG--DRAYLVTFRQVDPLFVIDLSDPAN 359 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeC--CeEEEEEEeecCceEEEECCCCCC
Confidence 3466666 5556666666544446799999988 766777766645688999987653
No 480
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=74.66 E-value=46 Score=27.33 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=39.7
Q ss_pred cceeEEEEcCCCCEEEEec-----------CCC-eEEEEeCCC--Ce--EEEEEeeecCCcceEEEEEeecCCCCeEEEE
Q 022870 19 ASVTDVCFHQTKPILFAGT-----------TGG-ELRIWDTVQ--HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (291)
Q Consensus 19 ~~v~~l~~~~~~~~l~s~~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 82 (291)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.... .....+++.+ ++ |+.+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l--~~p~Gi~~~~--~G--lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL--SMVTGLAVAV--GG--VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC--CCccceeEec--CC--EEEe
Confidence 4467899999998777642 223 777776432 32 223332222 2368899988 76 4444
Q ss_pred eCCCeEEEEECC
Q 022870 83 GRDGTVKCWDIE 94 (291)
Q Consensus 83 ~~dg~i~iwd~~ 94 (291)
+.....++.|..
T Consensus 88 ~~~~i~~~~d~~ 99 (367)
T TIGR02604 88 TPPDILFLRDKD 99 (367)
T ss_pred CCCeEEEEeCCC
Confidence 554433343544
No 481
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=74.03 E-value=35 Score=31.42 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=32.3
Q ss_pred ccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCceee
Q 022870 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVSH 288 (291)
Q Consensus 250 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~~ 288 (291)
-|...|..++.+.....|.+-+....|+-|.+....+..
T Consensus 243 ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl~g 281 (1263)
T COG5308 243 IPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNGLVG 281 (1263)
T ss_pred CcccchhheeecccccceeeecccceeeeEeeecccccc
Confidence 466789999998888889999999999999988766544
No 482
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=73.10 E-value=78 Score=29.21 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=54.9
Q ss_pred CceEEecCC---ccceeEEEEcC-CCCEEEEecCCCeEEEEeCCCCe----EEEEEe-eecC--------CcceEEEEEe
Q 022870 9 DPVAVLRGH---RASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHR----TVSSSW-VHSA--------AHGIVSVATG 71 (291)
Q Consensus 9 ~~~~~l~~h---~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~-~~~~--------~~~v~~~~~~ 71 (291)
.++..+..+ ..+...++|+| +...||.-...|...||++.... ....+. ...+ .+.-..+.|.
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~ 212 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWV 212 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEec
Confidence 445555532 23678899999 56689999999999999992111 011111 0000 0223477887
Q ss_pred ecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 72 PSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 72 ~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
+ +.+.|+.++.. .+.++|+++...
T Consensus 213 ~--~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 213 S--DSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred C--CCCEEEEEcCC-ceEEEECCCCCc
Confidence 7 66777777764 688899987654
No 483
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=73.04 E-value=41 Score=25.95 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=41.7
Q ss_pred ceeEEEEcCCCCEEEEec---CCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEE
Q 022870 20 SVTDVCFHQTKPILFAGT---TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (291)
Q Consensus 20 ~v~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd 92 (291)
.+...+.++++..+|... ....+.++... .....+. .. ..+..-.|.+ ++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cC--CccccccccC--CCCEEEEEcCCCceEEEE
Confidence 688999999998776554 33455555543 2222221 11 2388889999 866666666666666664
No 484
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=72.51 E-value=47 Score=26.46 Aligned_cols=153 Identities=15% Similarity=0.186 Sum_probs=66.9
Q ss_pred cceEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCCCCCCccccccceEEEEEeecccCccceeccCCCCceeeecccCc
Q 022870 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (291)
Q Consensus 63 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
..+..+.-++ +|.++++++.-..+.-||.-.... ++...........
T Consensus 145 gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~----------------------------- 191 (302)
T PF14870_consen 145 GSINDITRSS--DGRYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQS----------------------------- 191 (302)
T ss_dssp --EEEEEE-T--TS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEE-----------------------------
T ss_pred ceeEeEEECC--CCcEEEEECcccEEEEecCCCccc--eEEccCccceehh-----------------------------
Confidence 4478888888 888888777655666777543211 1111111111111
Q ss_pred cccccCCCCCCcccCCCCCcEEEEecCCcCeEEEEeCCCcceeeEecccccCCCCCCCCCccee-eeeEEEecCCCCCCc
Q 022870 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM-CMAVQAYLPSKSQGF 221 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~g~ 221 (291)
+.|.|++...++ + ..|.|+.=+... ....+... .......+. +..++ |.++ ++
T Consensus 192 -----------~gf~~~~~lw~~-~--~Gg~~~~s~~~~--~~~~w~~~------~~~~~~~~~~~ld~a-~~~~---~~ 245 (302)
T PF14870_consen 192 -----------MGFSPDGNLWML-A--RGGQIQFSDDPD--DGETWSEP------IIPIKTNGYGILDLA-YRPP---NE 245 (302)
T ss_dssp -----------EEE-TTS-EEEE-E--TTTEEEEEE-TT--EEEEE---------B-TTSS--S-EEEEE-ESSS---S-
T ss_pred -----------ceecCCCCEEEE-e--CCcEEEEccCCC--Cccccccc------cCCcccCceeeEEEE-ecCC---CC
Confidence 558888765553 3 357888877221 12222210 000112333 67776 9876 33
Q ss_pred eEEEeecCCCcEEEEEccCCCCceeecc---ccccceeEEEeecCCCeeEEecCCCeEEEE
Q 022870 222 VNVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (291)
Q Consensus 222 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 279 (291)
..++| ..|.+.+ . .+.++.-.... .-...++.|.|.++.+-++. +.+|.|.-|
T Consensus 246 -~wa~g-g~G~l~~-S-~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 246 -IWAVG-GSGTLLV-S-TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -EEEEE-STT-EEE-E-SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred -EEEEe-CCccEEE-e-CCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 44444 4553332 3 33354433332 22456888999655444444 568887655
No 485
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.65 E-value=42 Score=25.06 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred CcEEEEecCC-cCeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 161 PKYMAVAGEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 161 ~~~~~~~g~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
.+++.++|-. ...|++||+++++.+..-+.. +..-+ ..+ ++. + |..+....-.+|.-..+|.+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---~~~~F---gEG-it~---~------gd~~y~LTw~egvaf~~d~~ 119 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLA---PDTVF---GEG-ITK---L------GDYFYQLTWKEGVAFKYDAD 119 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecC---Ccccc---ccc-eee---c------cceEEEEEeccceeEEEChH
Confidence 3666666643 346999999999877665521 00000 011 111 1 12144555678889999998
Q ss_pred CCCCceeeccccccceeEEEeecCCCeeEEecCCCeEEEEEcCCCcee
Q 022870 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTVS 287 (291)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~~~~ 287 (291)
+ .+.+..+.. .+.=+.++-+.. -|+.++....++.-|..+....
T Consensus 120 t-~~~lg~~~y-~GeGWgLt~d~~--~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 120 T-LEELGRFSY-EGEGWGLTSDDK--NLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred H-hhhhccccc-CCcceeeecCCc--ceEeeCCceEEEecCHHHhhhc
Confidence 8 666666653 455567766554 3555554556666665554433
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.54 E-value=85 Score=28.55 Aligned_cols=70 Identities=9% Similarity=0.132 Sum_probs=47.3
Q ss_pred ccceeEEEEcCCCCEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
..-++++.-+|.|+-++.+..||.|++|+.......+..... .|-..+.|.. +-|+++..|..+.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn----hgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN----HGLVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec----cceEEEeccchhheeecc
Confidence 445778888899999999999999999997654432222222 2345566655 346666677777777643
No 487
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=70.06 E-value=69 Score=27.31 Aligned_cols=108 Identities=10% Similarity=0.031 Sum_probs=53.7
Q ss_pred cccCCCCCcEEEEecCCcCeEEEEeCCCccee--eEecccccCCCCCCCCCcceeeeeEEEecCCC---C-CCceEEEee
Q 022870 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC--TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK---S-QGFVNVLAG 227 (291)
Q Consensus 154 ~~~~~~~~~~~~~~g~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~-~g~~~l~~g 227 (291)
++|.|+|+ +++ +-...|.|++++..++... ..+.. -......+-...++ ++|+- . ++..|+...
T Consensus 35 maflPDG~-llV-tER~~G~I~~v~~~~~~~~~~~~l~~-------v~~~~ge~GLlgla-l~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 35 LLWGPDNQ-LWV-TERATGKILRVNPETGEVKVVFTLPE-------IVNDAQHNGLLGLA-LHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EEEcCCCe-EEE-EEecCCEEEEEeCCCCceeeeecCCc-------eeccCCCCceeeEE-ECCCccccCCCcEEEEEEe
Confidence 78999985 443 3322489999987654322 11211 00011244567776 99884 2 233223221
Q ss_pred c--------CCCcEEEEEccCCC-C---ceeecc------ccccceeEEEeecCCCeeEEecCC
Q 022870 228 Y--------EDGSILVWDIRNPG-I---PLTAMK------VHLEPVLCLSIDESCNGGISGGAD 273 (291)
Q Consensus 228 ~--------~dg~i~vwd~~~~~-~---~~~~~~------~h~~~v~~~~~~~~~~~l~s~s~d 273 (291)
. ....|.-|.+.... . ....+. .|. -..|.|.|+|.+.++.++.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1 12345445543211 1 111111 232 3478899999877766654
No 488
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=69.88 E-value=34 Score=31.11 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=41.7
Q ss_pred EEeecCCCcEEEEEccCCCCceeeccc---cccceeEEEeecCCCeeEEecCCCeEEEEEcCCC
Q 022870 224 VLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (291)
Q Consensus 224 l~~g~~dg~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~s~dg~i~vw~~~~~ 284 (291)
++-|+.+|.|.++...+ ......+.. |...|+.+....++-+++-.+.| .++.++.++-
T Consensus 638 ~~was~gG~V~vi~~tt-~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 638 FVWASEGGCVHVIPSTT-FIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred eeeeecCCceEEEechh-ccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence 67778899999999987 544444443 45689999998888777766655 4555555543
No 489
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.79 E-value=66 Score=27.04 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=42.2
Q ss_pred CEEEEecCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECC
Q 022870 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (291)
Q Consensus 31 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 94 (291)
.++..=+.||.+.+++-+.-.....+...-- --.+.|.+ ..+.|++++.+..|..|...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll---PgPl~Y~~--~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLL---PGPLCYCP--RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCC---CcCeEEee--cCCEEEEecCceeEEEecHH
Confidence 4677789999999999665443444443322 24567788 66889999999899999764
No 490
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=69.72 E-value=58 Score=26.34 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=37.9
Q ss_pred CceEEEeecCCCcEEEEEccCCCCcee--e-ccccccceeEEEeecCCCeeEEecCCCeEE
Q 022870 220 GFVNVLAGYEDGSILVWDIRNPGIPLT--A-MKVHLEPVLCLSIDESCNGGISGGADQKIV 277 (291)
Q Consensus 220 g~~~l~~g~~dg~i~vwd~~~~~~~~~--~-~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 277 (291)
|. ++++....+.|....+...+.... . +......+..+++.|||.+.++-+.+|.|.
T Consensus 271 g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GD-LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TE-EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred Cc-EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 44 677777778888888875233221 1 233445899999999999888887788764
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.28 E-value=17 Score=22.60 Aligned_cols=30 Identities=0% Similarity=0.071 Sum_probs=22.0
Q ss_pred CCCcccCCCCCcEEEEecCCcCeEEEEeCCC
Q 022870 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (291)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~~d~~i~~wd~~~ 181 (291)
..+++++|+++.+.++ ....+.|++|..+.
T Consensus 56 aNGI~~s~~~k~lyVa-~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVA-SSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEE-eccCCeEEEEEecC
Confidence 3338899999877764 55578999997653
No 492
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=66.16 E-value=16 Score=25.04 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=28.3
Q ss_pred ccceeEEEEcCCCCEEE-EecCCCeEEEEeCCCCe-EEEEEeeecCCcceEEEEEee
Q 022870 18 RASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGP 72 (291)
Q Consensus 18 ~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~ 72 (291)
...+.---|.+|-+.|+ +|-.|++|+.|.+...+ .+..+..+....+...+++.|
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lP 66 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLP 66 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecC
Confidence 44566667788766664 55568999999987663 344444444446688999988
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=63.30 E-value=98 Score=26.64 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=30.6
Q ss_pred CCCEEEEe---cCCCeEEEEeCCCCeEEEEEeeecCCcceEEEEEeecCCCCeEEEEeCCCeEEEEECCC
Q 022870 29 TKPILFAG---TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (291)
Q Consensus 29 ~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 95 (291)
++-++++. .......+.|. +|..+..+...... ...+...+ +|++++..+ ..+..+|+..
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~--~~~~~~l~--nG~ll~~~~--~~~~e~D~~G 176 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGS--DNSFKQLP--NGNLLIGSG--NRLYEIDLLG 176 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT----SSEEE-T--TS-EEEEEB--TEEEEE-TT-
T ss_pred CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccc--cceeeEcC--CCCEEEecC--CceEEEcCCC
Confidence 44355555 34566778884 57777666544321 11155566 777766544 6788888764
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.17 E-value=24 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=27.7
Q ss_pred EEeecCCCcEEEEEccCCCCceeeccccccceeEEEeecCCCeeEEe
Q 022870 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (291)
Q Consensus 224 l~~g~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 270 (291)
++.+..+|.+.-||..+ ++ ...+...-...++++.++++.+|+.+
T Consensus 30 ~le~~~~GRll~ydp~t-~~-~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPST-KE-TTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHHT---EEEEEEETTT-TE-EEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred eecCCCCcCEEEEECCC-Ce-EEEehhCCCccCeEEEcCCCCEEEEE
Confidence 44456678899999987 43 33333234567999999999966544
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.09 E-value=80 Score=24.90 Aligned_cols=90 Identities=14% Similarity=0.277 Sum_probs=52.0
Q ss_pred CeEEEEeCCCcceeeEecccccCCCCCCCCCcceeeeeEEEecCCCCCCceEEEeec------CCCcEEEEEccCCCCce
Q 022870 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY------EDGSILVWDIRNPGIPL 245 (291)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~l~~g~------~dg~i~vwd~~~~~~~~ 245 (291)
..|.+||..+.+-. .+. ....+.+.++. |..+ .+ ++++|. ....+..||..+ . ..
T Consensus 16 ~~lC~yd~~~~qW~-~~g-----------~~i~G~V~~l~-~~~~---~~-Llv~G~ft~~~~~~~~la~yd~~~-~-~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPG-----------NGISGTVTDLQ-WASN---NQ-LLVGGNFTLNGTNSSNLATYDFKN-Q-TW 76 (281)
T ss_pred CEEEEEECCCCEee-cCC-----------CCceEEEEEEE-EecC---CE-EEEEEeeEECCCCceeEEEEecCC-C-ee
Confidence 46999998865432 221 12678899998 8733 22 666664 456788899885 3 33
Q ss_pred eecccc-----ccceeEEEe-ecCC-CeeEEec-CCCe--EEEEE
Q 022870 246 TAMKVH-----LEPVLCLSI-DESC-NGGISGG-ADQK--IVLYN 280 (291)
Q Consensus 246 ~~~~~h-----~~~v~~~~~-~~~~-~~l~s~s-~dg~--i~vw~ 280 (291)
..+.+- .++|+.+.+ ..++ ++.++|. .+|. |..||
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 334331 367888887 2333 3343443 3444 44454
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=60.81 E-value=1.7e+02 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=22.2
Q ss_pred eeeeEEEecCCCCCCceEEEeecCCCcEEEEEcc
Q 022870 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (291)
Q Consensus 206 ~~~~~~~~~p~~~~g~~~l~~g~~dg~i~vwd~~ 239 (291)
.+++.. |--++ ++..++++..++.|++|-..
T Consensus 1183 ~v~s~E-FLVdg--~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1183 NVYSTE-FLVDG--SNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hceeee-eEEcC--CeeEEEEEcCCCcEEEEEeC
Confidence 355555 76664 44588999999999998654
No 497
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=59.62 E-value=18 Score=18.28 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=18.6
Q ss_pred cceeEEEeecCCCeeEEecCCC
Q 022870 253 EPVLCLSIDESCNGGISGGADQ 274 (291)
Q Consensus 253 ~~v~~~~~~~~~~~l~s~s~dg 274 (291)
....+|+++++|+..++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 3578999999999989988765
No 498
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=59.13 E-value=90 Score=24.87 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=39.0
Q ss_pred CCCEEEEecCCCeEEEEeCCC--CeEEEEEeeecCCcceEEEEEeecCCCCeEEEEe-CCCeEEEEECCCC
Q 022870 29 TKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTVKCWDIENG 96 (291)
Q Consensus 29 ~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~ 96 (291)
++++|+.|+.+|...+ ++.. ++..+.+ +. .+|+++...+ .-+.|++-+ ....++.+++..-
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~--~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GR--RSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--Cc--CceEEEEEEh--hhCEEEEEeCCcceEEEEEHHHh
Confidence 3368999999995544 4543 3333332 22 4599999998 656666544 4445999998543
No 499
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=58.32 E-value=99 Score=25.04 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=46.7
Q ss_pred CceEEecCCccceeEEEEcC-------CCCEEEEecCCCeEEEEeCCCCeEEEEEee-ec-CCcceEEEEEeecCCCCeE
Q 022870 9 DPVAVLRGHRASVTDVCFHQ-------TKPILFAGTTGGELRIWDTVQHRTVSSSWV-HS-AAHGIVSVATGPSIGLNKV 79 (291)
Q Consensus 9 ~~~~~l~~h~~~v~~l~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l 79 (291)
.|+..+..| ..+..+.|.. .|.++++.-..+.|....++.+..+...+. -. ....+..+++.| ||.++
T Consensus 244 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p--DG~Ly 320 (331)
T PF07995_consen 244 PPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP--DGALY 320 (331)
T ss_dssp --SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET--TSEEE
T ss_pred ccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC--CCeEE
Confidence 356667766 5577777763 455777766677888777765533322221 11 112589999999 98888
Q ss_pred EEEeCCCeEE
Q 022870 80 ISQGRDGTVK 89 (291)
Q Consensus 80 ~s~~~dg~i~ 89 (291)
++-+.+|.|.
T Consensus 321 v~~d~~G~iy 330 (331)
T PF07995_consen 321 VSDDSDGKIY 330 (331)
T ss_dssp EEE-TTTTEE
T ss_pred EEECCCCeEe
Confidence 8877788764
No 500
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=54.21 E-value=1e+02 Score=23.92 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=23.9
Q ss_pred eEEEEEeecCCCCeEEEEeCCCeEEEEECCCCCC
Q 022870 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (291)
Q Consensus 65 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 98 (291)
|+--.-+| +...+++.-..+-+++||+...++
T Consensus 58 IwVh~t~P--~kS~vItt~Kk~Gl~VYDLsGkqL 89 (364)
T COG4247 58 IWVHATNP--DKSLVITTVKKAGLRVYDLSGKQL 89 (364)
T ss_pred eEeccCCc--CcceEEEeeccCCeEEEecCCCee
Confidence 44445566 667888888888899999987654
Done!