Query 022871
Match_columns 291
No_of_seqs 175 out of 2381
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 5.2E-44 1.1E-48 301.6 33.6 283 2-288 3-285 (286)
2 TIGR03211 catechol_2_3 catecho 100.0 2.7E-31 5.9E-36 226.6 28.0 238 21-280 2-264 (303)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 3.5E-31 7.7E-36 225.1 28.1 237 20-282 1-257 (294)
4 KOG2943 Predicted glyoxalase [ 100.0 6E-32 1.3E-36 208.1 20.9 259 13-290 7-279 (299)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 2.8E-30 6E-35 218.5 27.2 237 21-281 1-263 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 1.3E-22 2.9E-27 175.9 22.0 224 22-255 1-267 (353)
7 PLN02875 4-hydroxyphenylpyruva 99.9 2.2E-20 4.8E-25 160.6 21.2 224 24-255 1-295 (398)
8 TIGR00068 glyox_I lactoylgluta 99.8 1.8E-19 4E-24 137.7 18.2 138 13-150 7-144 (150)
9 TIGR00068 glyox_I lactoylgluta 99.8 5.1E-20 1.1E-24 140.8 14.6 137 149-289 13-149 (150)
10 PLN02367 lactoylglutathione ly 99.8 5E-20 1.1E-24 146.6 13.9 132 151-288 73-229 (233)
11 COG2514 Predicted ring-cleavag 99.8 1.8E-18 3.9E-23 137.8 21.0 194 20-232 7-242 (265)
12 PRK10291 glyoxalase I; Provisi 99.8 3.8E-19 8.1E-24 132.5 16.1 125 28-152 1-125 (129)
13 PLN02367 lactoylglutathione ly 99.8 5.4E-19 1.2E-23 140.7 17.8 128 20-149 72-224 (233)
14 PLN03042 Lactoylglutathione ly 99.8 3.8E-18 8.3E-23 133.3 19.0 127 20-148 24-175 (185)
15 PRK10291 glyoxalase I; Provisi 99.8 5.1E-19 1.1E-23 131.8 13.1 122 158-283 1-122 (129)
16 KOG0638 4-hydroxyphenylpyruvat 99.8 1.2E-19 2.6E-24 146.0 9.9 231 20-256 14-292 (381)
17 PRK11478 putative lyase; Provi 99.8 4.4E-18 9.6E-23 126.7 16.1 125 19-147 2-129 (129)
18 cd08342 HPPD_N_like N-terminal 99.8 1E-18 2.2E-23 131.3 12.6 124 154-288 1-130 (136)
19 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 5.6E-18 1.2E-22 128.3 16.3 123 21-147 1-141 (142)
20 PLN03042 Lactoylglutathione ly 99.8 3.5E-18 7.6E-23 133.5 14.4 130 150-285 24-178 (185)
21 cd07233 Glyoxalase_I Glyoxalas 99.8 1.4E-17 3.1E-22 122.4 16.0 120 24-145 1-121 (121)
22 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.7E-17 3.7E-22 121.6 16.0 115 22-146 1-126 (127)
23 cd07233 Glyoxalase_I Glyoxalas 99.8 1.1E-17 2.4E-22 123.0 14.1 120 154-279 1-121 (121)
24 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 2.5E-17 5.4E-22 121.7 15.6 124 21-146 1-125 (125)
25 PLN02300 lactoylglutathione ly 99.8 8E-18 1.7E-22 142.2 14.1 133 150-286 21-153 (286)
26 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1E-17 2.2E-22 127.0 13.2 122 152-281 2-141 (142)
27 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 2.5E-17 5.4E-22 121.7 14.9 119 23-145 1-125 (125)
28 cd08342 HPPD_N_like N-terminal 99.8 5.5E-17 1.2E-21 121.9 16.6 120 24-150 1-126 (136)
29 PRK04101 fosfomycin resistance 99.8 9.8E-17 2.1E-21 121.0 16.1 118 20-148 1-120 (139)
30 cd08360 MhqB_like_C C-terminal 99.7 3.2E-17 7E-22 122.9 13.2 124 151-285 1-124 (134)
31 TIGR03645 glyox_marine lactoyl 99.7 1E-16 2.3E-21 123.9 16.4 126 21-149 2-153 (162)
32 cd07243 2_3_CTD_C C-terminal d 99.7 1.4E-16 3.1E-21 120.5 16.6 119 20-147 3-125 (143)
33 cd07257 THT_oxygenase_C The C- 99.7 4.8E-17 1E-21 124.6 14.1 119 23-148 1-126 (153)
34 cd07257 THT_oxygenase_C The C- 99.7 1.2E-17 2.6E-22 128.0 10.0 121 153-284 1-128 (153)
35 cd07243 2_3_CTD_C C-terminal d 99.7 5.9E-17 1.3E-21 122.6 13.4 121 151-281 4-125 (143)
36 cd08358 Glo_EDI_BRP_like_21 Th 99.7 1E-16 2.2E-21 117.5 13.4 114 153-280 2-126 (127)
37 TIGR03645 glyox_marine lactoyl 99.7 7.1E-17 1.5E-21 124.8 13.1 125 152-283 3-153 (162)
38 cd07265 2_3_CTD_N N-terminal d 99.7 2.4E-16 5.2E-21 116.2 15.4 116 21-148 2-120 (122)
39 cd08360 MhqB_like_C C-terminal 99.7 2.9E-16 6.3E-21 117.7 16.0 117 22-148 2-121 (134)
40 PRK11478 putative lyase; Provi 99.7 8.3E-17 1.8E-21 119.8 13.0 120 152-280 5-128 (129)
41 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 1.1E-16 2.5E-21 118.2 12.6 119 153-279 1-125 (125)
42 TIGR03081 metmalonyl_epim meth 99.7 7.7E-17 1.7E-21 119.7 11.2 119 23-146 1-128 (128)
43 cd07258 PpCmtC_C C-terminal do 99.7 1.7E-16 3.6E-21 119.6 13.0 116 155-283 1-116 (141)
44 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 2.3E-16 5.1E-21 116.4 13.1 121 152-280 2-125 (125)
45 cd09014 BphC-JF8_C_like C-term 99.7 8.1E-16 1.8E-20 119.4 16.5 124 19-148 2-128 (166)
46 cd07256 HPCD_C_class_II C-term 99.7 2.5E-16 5.3E-21 121.7 13.3 122 151-282 1-124 (161)
47 cd07247 SgaA_N_like N-terminal 99.7 3.1E-16 6.7E-21 114.1 13.1 114 154-280 1-114 (114)
48 PF00903 Glyoxalase: Glyoxalas 99.7 1.2E-16 2.6E-21 118.3 11.1 120 23-144 1-128 (128)
49 cd07265 2_3_CTD_N N-terminal d 99.7 2.6E-16 5.5E-21 116.0 12.3 117 151-283 2-121 (122)
50 cd07237 BphC1-RGP6_C_like C-te 99.7 3.5E-16 7.7E-21 119.9 12.9 122 150-283 6-133 (154)
51 TIGR03081 metmalonyl_epim meth 99.7 3.4E-16 7.3E-21 116.2 11.9 119 153-280 1-128 (128)
52 cd07237 BphC1-RGP6_C_like C-te 99.7 1.5E-15 3.3E-20 116.4 15.8 122 20-149 6-133 (154)
53 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1E-15 2.2E-20 113.0 14.1 118 21-146 1-124 (125)
54 cd09011 Glo_EDI_BRP_like_23 Th 99.7 1E-15 2.2E-20 112.5 13.8 116 22-147 1-119 (120)
55 cd09013 BphC-JF8_N_like N-term 99.7 1.6E-15 3.4E-20 111.6 14.7 115 19-148 2-119 (121)
56 cd08361 PpCmtC_N N-terminal do 99.7 1.2E-15 2.6E-20 112.8 13.7 113 20-148 3-120 (124)
57 cd08364 FosX FosX, a fosfomyci 99.7 2.7E-15 5.9E-20 111.9 15.7 120 20-148 1-123 (131)
58 cd07247 SgaA_N_like N-terminal 99.7 1.7E-15 3.6E-20 110.2 14.2 114 24-146 1-114 (114)
59 cd07256 HPCD_C_class_II C-term 99.7 3.8E-15 8.3E-20 115.1 16.2 118 22-148 2-124 (161)
60 cd07266 HPCD_N_class_II N-term 99.7 2E-15 4.3E-20 111.0 14.0 116 20-148 1-119 (121)
61 cd08355 Glo_EDI_BRP_like_14 Th 99.7 4.9E-15 1.1E-19 109.1 15.9 118 26-146 2-121 (122)
62 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.6E-15 5.7E-20 109.7 14.4 117 26-146 1-119 (119)
63 PRK06724 hypothetical protein; 99.7 3.6E-15 7.8E-20 110.4 15.1 113 20-148 4-124 (128)
64 cd08343 ED_TypeI_classII_C C-t 99.7 4.4E-15 9.6E-20 110.8 15.7 116 25-149 1-119 (131)
65 cd08363 FosB FosB, a fosfomyci 99.7 1.9E-15 4.1E-20 112.7 13.6 114 24-148 1-116 (131)
66 cd09011 Glo_EDI_BRP_like_23 Th 99.7 9.1E-16 2E-20 112.7 11.5 113 153-281 2-119 (120)
67 cd07263 Glo_EDI_BRP_like_16 Th 99.7 1.4E-15 3.1E-20 111.1 12.0 117 156-280 1-119 (119)
68 cd08363 FosB FosB, a fosfomyci 99.7 1.6E-15 3.5E-20 113.1 12.3 116 154-284 1-118 (131)
69 cd08355 Glo_EDI_BRP_like_14 Th 99.7 3.8E-15 8.3E-20 109.7 14.1 115 157-280 3-121 (122)
70 cd07239 BphC5-RK37_C_like C-te 99.7 4.9E-15 1.1E-19 112.2 14.9 114 22-149 3-119 (144)
71 cd08347 PcpA_C_like C-terminal 99.7 6E-15 1.3E-19 113.3 15.2 117 23-148 1-121 (157)
72 cd08346 PcpA_N_like N-terminal 99.7 4.3E-15 9.2E-20 109.8 14.0 120 23-145 1-126 (126)
73 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 8.4E-15 1.8E-19 107.7 15.4 116 27-147 5-122 (122)
74 PRK04101 fosfomycin resistance 99.7 3.3E-15 7.1E-20 112.7 13.4 117 152-283 3-121 (139)
75 cd07264 Glo_EDI_BRP_like_15 Th 99.7 8.4E-15 1.8E-19 108.2 15.2 117 24-147 1-125 (125)
76 cd07239 BphC5-RK37_C_like C-te 99.7 2.7E-15 5.9E-20 113.6 12.7 117 152-283 3-119 (144)
77 cd07255 Glo_EDI_BRP_like_12 Th 99.7 1.2E-14 2.6E-19 107.4 16.0 117 22-149 1-121 (125)
78 cd08351 ChaP_like ChaP, an enz 99.7 8.6E-15 1.9E-19 108.0 15.0 112 21-148 2-122 (123)
79 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 2.7E-15 5.9E-20 108.6 12.1 113 24-144 1-114 (114)
80 cd09014 BphC-JF8_C_like C-term 99.6 4.7E-15 1E-19 115.1 14.0 120 152-281 5-127 (166)
81 cd07258 PpCmtC_C C-terminal do 99.6 6.9E-15 1.5E-19 110.9 14.4 114 25-150 1-117 (141)
82 cd08343 ED_TypeI_classII_C C-t 99.6 3.9E-15 8.4E-20 111.1 13.0 117 155-284 1-120 (131)
83 cd08359 Glo_EDI_BRP_like_22 Th 99.6 8E-15 1.7E-19 107.4 14.4 112 25-146 3-119 (119)
84 cd07249 MMCE Methylmalonyl-CoA 99.6 3.5E-15 7.6E-20 110.6 12.6 118 154-280 1-128 (128)
85 cd07252 BphC1-RGP6_N_like N-te 99.6 7.9E-15 1.7E-19 107.7 14.3 113 22-148 1-118 (120)
86 PF00903 Glyoxalase: Glyoxalas 99.6 7.2E-16 1.6E-20 114.2 8.8 120 153-278 1-128 (128)
87 cd07240 ED_TypeI_classII_N N-t 99.6 1E-14 2.2E-19 106.5 14.7 111 22-147 1-114 (117)
88 cd07264 Glo_EDI_BRP_like_15 Th 99.6 4.3E-15 9.2E-20 109.8 12.8 115 154-281 1-125 (125)
89 cd07249 MMCE Methylmalonyl-CoA 99.6 3.1E-15 6.8E-20 110.9 12.1 119 24-146 1-128 (128)
90 cd09013 BphC-JF8_N_like N-term 99.6 4.9E-15 1.1E-19 109.0 12.9 112 151-281 4-118 (121)
91 cd07267 THT_Oxygenase_N N-term 99.6 1.5E-14 3.2E-19 105.1 15.2 111 21-148 1-111 (113)
92 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.8E-14 3.9E-19 106.9 16.0 116 23-146 1-127 (128)
93 cd08347 PcpA_C_like C-terminal 99.6 4E-15 8.6E-20 114.3 12.5 117 153-282 1-121 (157)
94 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 5E-15 1.1E-19 109.2 12.7 117 152-280 2-124 (125)
95 cd08362 BphC5-RrK37_N_like N-t 99.6 1.5E-14 3.3E-19 106.1 14.7 113 21-148 1-118 (120)
96 cd07266 HPCD_N_class_II N-term 99.6 4.5E-15 9.7E-20 109.1 11.6 114 152-282 3-119 (121)
97 cd08364 FosX FosX, a fosfomyci 99.6 9.8E-15 2.1E-19 108.9 13.5 118 152-283 3-124 (131)
98 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1E-14 2.3E-19 107.2 13.6 115 157-280 5-121 (122)
99 COG3324 Predicted enzyme relat 99.6 7.1E-15 1.5E-19 105.8 11.9 120 151-282 7-126 (127)
100 cd08346 PcpA_N_like N-terminal 99.6 8.8E-15 1.9E-19 108.1 12.3 119 153-279 1-126 (126)
101 cd08351 ChaP_like ChaP, an enz 99.6 8.8E-15 1.9E-19 107.9 12.2 111 152-281 3-121 (123)
102 cd07252 BphC1-RGP6_N_like N-te 99.6 8.3E-15 1.8E-19 107.6 12.0 111 153-281 2-117 (120)
103 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 5.1E-15 1.1E-19 107.1 10.7 113 154-278 1-114 (114)
104 cd08361 PpCmtC_N N-terminal do 99.6 6.8E-15 1.5E-19 108.7 11.5 112 152-283 5-121 (124)
105 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.7E-14 3.6E-19 107.1 13.6 116 153-280 1-127 (128)
106 PRK06724 hypothetical protein; 99.6 9E-15 2E-19 108.3 12.0 110 152-281 6-123 (128)
107 TIGR03211 catechol_2_3 catecho 99.6 2.7E-14 5.8E-19 122.0 16.5 122 17-147 139-265 (303)
108 cd08348 BphC2-C3-RGP6_C_like T 99.6 6.5E-14 1.4E-18 104.9 16.3 119 23-149 1-122 (134)
109 cd08359 Glo_EDI_BRP_like_22 Th 99.6 1.5E-14 3.3E-19 105.9 12.6 112 156-280 4-119 (119)
110 cd08348 BphC2-C3-RGP6_C_like T 99.6 2.8E-14 6.1E-19 106.9 13.6 123 153-284 1-123 (134)
111 PF12681 Glyoxalase_2: Glyoxal 99.6 2.5E-14 5.4E-19 102.8 12.8 108 29-145 1-108 (108)
112 COG3185 4-hydroxyphenylpyruvat 99.6 8.2E-14 1.8E-18 115.0 17.0 225 18-256 17-275 (363)
113 cd07240 ED_TypeI_classII_N N-t 99.6 2.5E-14 5.5E-19 104.3 12.8 112 152-282 1-115 (117)
114 cd07255 Glo_EDI_BRP_like_12 Th 99.6 3.4E-14 7.3E-19 105.0 13.5 117 152-283 1-121 (125)
115 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 2.5E-14 5.4E-19 103.7 12.5 109 156-281 3-111 (112)
116 PF12681 Glyoxalase_2: Glyoxal 99.6 1.4E-14 3.1E-19 104.2 11.0 108 159-279 1-108 (108)
117 cd08345 Fosfomycin_RP Fosfomyc 99.6 3.7E-14 8.1E-19 102.8 13.0 109 26-147 1-111 (113)
118 cd07244 FosA FosA, a Fosfomyci 99.6 2.9E-14 6.3E-19 104.9 12.1 109 23-148 1-111 (121)
119 cd08349 BLMA_like Bleomycin bi 99.6 3.3E-14 7.2E-19 102.8 12.2 109 158-280 3-112 (112)
120 TIGR02295 HpaD 3,4-dihydroxyph 99.6 8.9E-14 1.9E-18 118.3 16.6 121 19-148 132-257 (294)
121 cd08362 BphC5-RrK37_N_like N-t 99.6 3E-14 6.6E-19 104.5 12.0 112 152-282 2-118 (120)
122 cd07267 THT_Oxygenase_N N-term 99.6 4.1E-14 8.9E-19 102.7 12.2 109 152-281 2-110 (113)
123 cd08345 Fosfomycin_RP Fosfomyc 99.6 2.5E-14 5.5E-19 103.7 11.1 109 156-281 1-111 (113)
124 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.1E-13 2.4E-18 100.3 14.3 109 26-147 3-111 (112)
125 cd07262 Glo_EDI_BRP_like_19 Th 99.6 9.6E-14 2.1E-18 102.3 14.1 114 24-145 1-122 (123)
126 cd08354 Glo_EDI_BRP_like_13 Th 99.6 1.1E-13 2.3E-18 101.8 14.2 113 24-146 1-121 (122)
127 cd07244 FosA FosA, a Fosfomyci 99.6 7.2E-14 1.6E-18 102.7 12.2 110 153-283 1-112 (121)
128 cd07261 Glo_EDI_BRP_like_11 Th 99.6 6.2E-14 1.3E-18 101.9 11.6 108 157-279 2-113 (114)
129 cd08344 MhqB_like_N N-terminal 99.6 1.8E-13 4E-18 99.1 13.9 108 22-148 1-110 (112)
130 cd07262 Glo_EDI_BRP_like_19 Th 99.6 8.8E-14 1.9E-18 102.5 12.2 114 154-279 1-122 (123)
131 cd07235 MRD Mitomycin C resist 99.6 1.1E-13 2.4E-18 101.8 12.6 115 24-145 1-121 (122)
132 cd07254 Glo_EDI_BRP_like_20 Th 99.6 2.7E-13 5.8E-18 99.5 14.6 112 25-148 3-118 (120)
133 cd06587 Glo_EDI_BRP_like This 99.5 2.3E-13 4.9E-18 97.7 13.7 112 26-144 1-112 (112)
134 cd08350 BLMT_like BLMT, a bleo 99.5 1E-13 2.2E-18 101.7 11.9 108 156-281 5-119 (120)
135 cd07254 Glo_EDI_BRP_like_20 Th 99.5 1.4E-13 3E-18 101.0 12.6 112 155-282 3-118 (120)
136 cd08354 Glo_EDI_BRP_like_13 Th 99.5 1.1E-13 2.4E-18 101.7 11.9 114 154-281 1-122 (122)
137 PF13669 Glyoxalase_4: Glyoxal 99.5 9E-14 2E-18 100.2 11.2 95 25-121 1-97 (109)
138 cd09012 Glo_EDI_BRP_like_24 Th 99.5 8E-14 1.7E-18 102.9 11.2 112 155-280 2-123 (124)
139 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1.9E-13 4.1E-18 100.9 12.9 113 26-146 2-124 (125)
140 cd07235 MRD Mitomycin C resist 99.5 9.5E-14 2.1E-18 102.2 11.1 113 154-279 1-121 (122)
141 cd08349 BLMA_like Bleomycin bi 99.5 3.1E-13 6.7E-18 97.7 13.7 109 28-146 3-112 (112)
142 TIGR03213 23dbph12diox 2,3-dih 99.5 3E-13 6.5E-18 114.5 15.4 119 20-147 139-263 (286)
143 cd07261 Glo_EDI_BRP_like_11 Th 99.5 4E-13 8.6E-18 97.6 13.4 108 27-145 2-113 (114)
144 cd06587 Glo_EDI_BRP_like This 99.5 1.4E-13 2.9E-18 98.9 10.8 112 156-278 1-112 (112)
145 COG3324 Predicted enzyme relat 99.5 1E-12 2.2E-17 94.7 14.9 121 19-147 5-125 (127)
146 cd08350 BLMT_like BLMT, a bleo 99.5 5.1E-13 1.1E-17 98.0 13.5 108 26-147 5-119 (120)
147 KOG2943 Predicted glyoxalase [ 99.5 6.4E-14 1.4E-18 108.9 8.4 127 151-290 15-152 (299)
148 cd08344 MhqB_like_N N-terminal 99.5 5.2E-13 1.1E-17 96.7 12.0 105 153-280 2-108 (112)
149 cd09012 Glo_EDI_BRP_like_24 Th 99.5 7E-13 1.5E-17 97.9 12.5 112 25-146 2-123 (124)
150 cd08357 Glo_EDI_BRP_like_18 Th 99.5 3.7E-13 7.9E-18 99.4 10.9 113 156-280 2-124 (125)
151 cd08356 Glo_EDI_BRP_like_17 Th 99.5 4.8E-13 1E-17 97.1 11.0 104 157-280 5-113 (113)
152 cd07251 Glo_EDI_BRP_like_10 Th 99.5 7.8E-13 1.7E-17 97.0 11.4 110 157-280 2-120 (121)
153 PF13669 Glyoxalase_4: Glyoxal 99.5 4.4E-13 9.5E-18 96.6 9.4 95 155-255 1-97 (109)
154 cd07251 Glo_EDI_BRP_like_10 Th 99.5 2.4E-12 5.1E-17 94.4 12.7 110 27-146 2-120 (121)
155 KOG2944 Glyoxalase [Carbohydra 99.4 8.3E-13 1.8E-17 96.4 9.5 125 21-147 20-168 (170)
156 KOG2944 Glyoxalase [Carbohydra 99.4 3.7E-13 8.1E-18 98.2 7.4 73 203-281 87-168 (170)
157 cd08356 Glo_EDI_BRP_like_17 Th 99.4 2.4E-12 5.2E-17 93.4 11.1 104 27-146 5-113 (113)
158 cd07250 HPPD_C_like C-terminal 99.3 1.7E-11 3.6E-16 97.2 11.8 100 21-122 1-113 (191)
159 cd07250 HPPD_C_like C-terminal 99.2 7E-11 1.5E-15 93.6 9.4 99 152-256 2-113 (191)
160 COG3565 Predicted dioxygenase 99.2 2.4E-10 5.2E-15 78.8 10.6 118 23-148 4-130 (138)
161 TIGR01263 4HPPD 4-hydroxypheny 99.2 2.6E-10 5.6E-15 99.3 11.5 104 17-122 152-268 (353)
162 COG2514 Predicted ring-cleavag 99.2 6.4E-10 1.4E-14 89.3 12.1 122 149-283 6-128 (265)
163 PF13468 Glyoxalase_3: Glyoxal 99.1 1.4E-09 3.1E-14 85.2 11.3 150 24-175 1-175 (175)
164 cd06588 PhnB_like Escherichia 99.1 2.7E-09 5.8E-14 79.1 11.2 114 158-279 4-128 (128)
165 COG2764 PhnB Uncharacterized p 99.1 2.3E-08 5E-13 73.5 15.6 118 27-149 4-133 (136)
166 COG3565 Predicted dioxygenase 99.0 3.7E-09 8E-14 73.0 9.9 115 153-280 4-128 (138)
167 COG2764 PhnB Uncharacterized p 99.0 1E-08 2.3E-13 75.3 12.2 117 158-283 5-133 (136)
168 cd06588 PhnB_like Escherichia 99.0 3E-08 6.6E-13 73.4 14.9 111 27-144 3-127 (128)
169 COG3607 Predicted lactoylgluta 99.0 1.1E-08 2.4E-13 72.0 10.0 118 153-283 3-129 (133)
170 PLN02875 4-hydroxyphenylpyruva 99.0 3.2E-09 7E-14 92.1 9.0 101 19-121 176-295 (398)
171 COG0346 GloA Lactoylglutathion 98.9 4.8E-09 1E-13 77.5 7.7 122 22-146 1-138 (138)
172 PF14506 CppA_N: CppA N-termin 98.9 9.7E-08 2.1E-12 67.0 13.2 115 24-148 1-115 (125)
173 COG0346 GloA Lactoylglutathion 98.9 8.2E-09 1.8E-13 76.3 7.9 121 153-280 2-138 (138)
174 PF14696 Glyoxalase_5: Hydroxy 98.8 3.9E-08 8.5E-13 72.7 9.6 125 17-150 3-129 (139)
175 COG3607 Predicted lactoylgluta 98.7 1.8E-07 3.8E-12 66.0 8.8 116 23-147 3-127 (133)
176 PRK01037 trmD tRNA (guanine-N( 98.6 3.3E-07 7.2E-12 77.0 10.2 108 152-280 246-353 (357)
177 KOG0638 4-hydroxyphenylpyruvat 98.5 1.6E-07 3.5E-12 76.7 5.6 130 152-287 16-154 (381)
178 COG3185 4-hydroxyphenylpyruvat 98.5 3.4E-07 7.5E-12 76.3 7.4 101 20-122 164-275 (363)
179 PRK01037 trmD tRNA (guanine-N( 98.4 2.3E-06 5E-11 72.1 10.8 106 22-147 246-354 (357)
180 PRK10148 hypothetical protein; 98.3 7.9E-05 1.7E-09 56.3 16.1 117 27-151 5-145 (147)
181 PRK10148 hypothetical protein; 98.3 2E-05 4.4E-10 59.6 12.1 115 158-281 6-141 (147)
182 PF14506 CppA_N: CppA N-termin 98.2 6.8E-05 1.5E-09 52.9 11.1 114 156-285 3-118 (125)
183 PF14696 Glyoxalase_5: Hydroxy 98.1 0.00011 2.4E-09 54.4 11.2 117 153-284 9-129 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.7 0.00018 3.9E-09 56.2 8.1 87 154-250 1-101 (175)
185 PF06983 3-dmu-9_3-mt: 3-demet 96.8 0.057 1.2E-06 39.0 11.8 99 162-279 11-116 (116)
186 PF06983 3-dmu-9_3-mt: 3-demet 96.3 0.21 4.5E-06 36.0 12.3 101 26-145 6-116 (116)
187 PF14507 CppA_C: CppA C-termin 96.2 0.0069 1.5E-07 41.9 3.8 92 154-278 6-100 (101)
188 PF15067 FAM124: FAM124 family 96.1 0.076 1.6E-06 42.5 9.6 104 23-144 128-235 (236)
189 PF15067 FAM124: FAM124 family 93.7 1.5 3.3E-05 35.3 10.5 125 132-278 108-235 (236)
190 PF14507 CppA_C: CppA C-termin 93.0 0.41 8.8E-06 33.3 5.7 92 24-144 6-100 (101)
191 PRK11700 hypothetical protein; 84.9 14 0.0003 28.9 9.1 77 22-102 38-120 (187)
192 COG3865 Uncharacterized protei 82.4 18 0.00039 27.0 9.5 43 226-280 81-123 (151)
193 PF06185 YecM: YecM protein; 81.0 25 0.00053 27.6 9.9 85 22-110 33-124 (185)
194 cd07268 Glo_EDI_BRP_like_4 Thi 74.8 33 0.00072 25.7 8.7 75 24-102 2-82 (149)
195 PF13670 PepSY_2: Peptidase pr 65.3 24 0.00051 23.5 5.2 45 102-149 30-75 (83)
196 PF13670 PepSY_2: Peptidase pr 61.2 20 0.00043 23.8 4.3 45 232-282 30-74 (83)
197 cd04882 ACT_Bt0572_2 C-termina 61.1 21 0.00046 21.9 4.2 26 92-117 39-64 (65)
198 PHA02754 hypothetical protein; 60.2 19 0.00041 22.0 3.4 50 231-282 14-63 (67)
199 KOG4657 Uncharacterized conser 56.0 25 0.00055 28.2 4.5 39 162-203 145-183 (246)
200 PTZ00039 40S ribosomal protein 53.1 63 0.0014 23.2 5.8 46 228-274 26-71 (115)
201 COG0051 RpsJ Ribosomal protein 52.2 33 0.00072 24.1 4.1 48 226-274 11-58 (104)
202 PF07063 DUF1338: Domain of un 48.1 30 0.00065 29.6 4.1 43 25-68 36-83 (302)
203 cd04883 ACT_AcuB C-terminal AC 45.7 49 0.0011 20.8 4.1 29 222-254 41-71 (72)
204 TIGR01046 S10_Arc_S20_Euk ribo 42.6 54 0.0012 22.8 4.1 46 228-274 10-55 (99)
205 PF07063 DUF1338: Domain of un 40.9 54 0.0012 28.0 4.6 30 219-252 181-216 (302)
206 PF09066 B2-adapt-app_C: Beta2 39.3 1.4E+02 0.0029 21.1 6.7 71 101-172 36-107 (114)
207 cd04895 ACT_ACR_1 ACT domain-c 38.1 1.1E+02 0.0024 19.8 5.2 50 227-276 5-55 (72)
208 PF02208 Sorb: Sorbin homologo 36.9 20 0.00044 20.7 1.0 24 152-175 10-33 (47)
209 PF11080 DUF2622: Protein of u 35.6 70 0.0015 22.1 3.6 33 101-148 21-53 (96)
210 COG4747 ACT domain-containing 34.8 39 0.00084 24.3 2.3 25 224-252 110-134 (142)
211 PRK12271 rps10p 30S ribosomal 34.3 88 0.0019 21.9 4.1 46 228-274 11-56 (102)
212 CHL00135 rps10 ribosomal prote 33.4 82 0.0018 22.0 3.8 47 227-274 15-61 (101)
213 cd04906 ACT_ThrD-I_1 First of 33.3 92 0.002 20.7 4.0 27 93-119 41-71 (85)
214 PF08445 FR47: FR47-like prote 32.6 1.1E+02 0.0024 20.3 4.4 23 29-52 60-82 (86)
215 KOG4657 Uncharacterized conser 32.3 38 0.00082 27.3 2.2 20 32-51 145-164 (246)
216 PF07283 TrbH: Conjugal transf 30.9 1.5E+02 0.0032 21.6 4.8 66 104-170 39-104 (121)
217 COG1791 Uncharacterized conser 29.8 1.2E+02 0.0026 23.4 4.4 79 101-180 78-161 (181)
218 PTZ00330 acetyltransferase; Pr 29.4 80 0.0017 23.0 3.6 27 23-52 115-141 (147)
219 PRK00969 hypothetical protein; 29.1 1.1E+02 0.0023 28.2 4.7 75 102-180 325-405 (508)
220 cd04897 ACT_ACR_3 ACT domain-c 28.7 1.7E+02 0.0037 19.1 4.7 52 226-277 4-56 (75)
221 PF09142 TruB_C: tRNA Pseudour 27.4 1.2E+02 0.0026 18.5 3.4 42 232-283 5-46 (56)
222 TIGR00318 cyaB adenylyl cyclas 26.9 3E+02 0.0064 21.2 15.4 135 98-249 8-159 (174)
223 PRK00596 rpsJ 30S ribosomal pr 25.9 1.3E+02 0.0028 21.0 3.8 46 228-274 13-58 (102)
224 cd04908 ACT_Bt0572_1 N-termina 25.3 1.4E+02 0.003 18.4 3.7 23 96-118 43-65 (66)
225 TIGR01049 rpsJ_bact ribosomal 25.3 1.2E+02 0.0026 21.0 3.5 46 228-274 10-55 (99)
226 PF13176 TPR_7: Tetratricopept 25.2 60 0.0013 17.3 1.7 18 30-47 11-28 (36)
227 TIGR03884 sel_bind_Methan sele 24.5 1.3E+02 0.0028 19.7 3.2 25 228-252 22-46 (74)
228 PF02952 Fucose_iso_C: L-fucos 24.0 1E+02 0.0022 22.8 3.3 27 24-50 113-139 (142)
229 PF10649 DUF2478: Protein of u 23.7 2.6E+02 0.0056 21.4 5.3 54 232-285 11-68 (159)
230 PF05271 Tobravirus_2B: Tobrav 23.7 46 0.00099 23.0 1.1 30 15-47 57-86 (116)
231 TIGR03268 methan_mark_3 putati 23.0 1.9E+02 0.004 26.6 5.0 75 102-180 322-402 (503)
232 PF00583 Acetyltransf_1: Acety 22.7 73 0.0016 20.3 2.0 25 23-48 58-83 (83)
233 PRK10562 putative acetyltransf 22.2 2.6E+02 0.0055 20.3 5.2 27 27-54 100-127 (145)
234 cd00034 ChSh Chromo Shadow Dom 20.7 2.1E+02 0.0045 17.3 3.8 40 138-177 13-53 (54)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=5.2e-44 Score=301.60 Aligned_cols=283 Identities=80% Similarity=1.316 Sum_probs=229.1
Q ss_pred CCCCccccchhccCCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeecc
Q 022871 2 AEASPAAANAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (291)
|.+|-+.+++...+++++.|.++.|++|.|+|++++++||+++|||++..+...+...+...++..++...++.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~ 82 (286)
T PLN02300 3 AAASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYN 82 (286)
T ss_pred cccccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEecc
Confidence 45677778888999999999999999999999999999999999999987655555555567776655445566666554
Q ss_pred CCCCcccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCCceeEEeee
Q 022871 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
.+......+.|+.|++|.|+|+++++++|+++|+++...+...+++...++||+||+|+.|||++....+.++.|+.|.|
T Consensus 83 ~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~ 162 (286)
T PLN02300 83 YGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRV 162 (286)
T ss_pred CCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEe
Confidence 33333445568899999999999999999999999888777766655556889999999999999988899999999999
Q ss_pred CCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhhHHHHH
Q 022871 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~~l~ 241 (291)
+|++++.+||+++|||++......++..+...++..+.......+++..+.+...+..+++.+|++|.|+|++++++++
T Consensus 163 ~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~- 241 (286)
T PLN02300 163 GDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAI- 241 (286)
T ss_pred CCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHH-
Confidence 9999999999999999987654444455666665532222234566655443333345678999999999999999999
Q ss_pred HHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhhhhh
Q 022871 242 LVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 288 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~ 288 (291)
+++|++++.+|...|+.+++.++|+||+|+.++|+++.++.+++
T Consensus 242 ---~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~ 285 (286)
T PLN02300 242 ---KLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKEL 285 (286)
T ss_pred ---HHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhc
Confidence 99999999998888865558899999999999999999999886
No 2
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=2.7e-31 Score=226.62 Aligned_cols=238 Identities=21% Similarity=0.244 Sum_probs=162.3
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++|+.|.|+|++++++||+++|||++..+... .+++.......+..+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 67899999999999999999999999998765321 23333211111222322211 234789999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCC---------------------CCCcee
Q 022871 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT---------------------PEPLCQ 156 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~---------------------~~~~~h 156 (291)
+ |+++++++|+++|+.+...+.....+....++|+||+|+.+||...... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 7 7889999999999998755432211222348999999999999985421 235899
Q ss_pred EEeeeCCccccHHHHHhhhCCeeeeeeccCCcce-eEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhh
Q 022871 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
|+|.|+|++++.+||+++|||++......+++.. ...++..+.. ...+.+.. . +....+.|++|.|+|+++
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~----~~~g~~~Hiaf~v~~~~~ 220 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVG--D----PEPGKLHHVSFFLDSWED 220 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--Ccccceec--C----CCCCceEEEEEEcCCHHH
Confidence 9999999999999999999999866543333221 2233332221 22232211 0 112248899999997544
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
..+. .++|+++|+++..+|..++...++++||+||+|++|||+.
T Consensus 221 v~~~-~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 221 VLKA-ADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHH-HHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 3322 2444999999888887665434578999999999999983
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=3.5e-31 Score=225.06 Aligned_cols=237 Identities=23% Similarity=0.271 Sum_probs=164.4
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
+|.+++|+.|.|+|++++.+||+++|||++..+.. ...++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999876532 123443211111122222211 23478899999
Q ss_pred eC---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC---------------CCCCceeEEeee
Q 022871 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------TPEPLCQVMLRV 161 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~---------------~~~~~~hv~l~v 161 (291)
|+ |+++++++|+++|+++...+. +.+. ..++|+||+|+.+||+.... .+.++.|++|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~~~~-~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--GGQP-EALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--CCCc-eEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 789999999999999876432 2222 45899999999999987331 235689999999
Q ss_pred CCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhhHHHHH
Q 022871 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~~l~ 241 (291)
.|++++.+||+++|||++........+.....++..... .+.+.+.. ..+++++|++|.|+|.+++ ..+.
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v-~~~~ 214 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTN-------GNGPRLHHIAYWVHDPLNI-IKAC 214 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeec-------CCCCceeeEEEEcCCHHHH-HHHH
Confidence 999999999999999997655433333323334432221 22333321 1246889999999995543 2333
Q ss_pred HHHHHhCCe--eecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 242 LVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 242 ~~~~~~G~~--~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++|+++|++ +...|.++..++.+++|++||+|++|||+...
T Consensus 215 ~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 215 DILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 444999997 66677665544457899999999999998744
No 4
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-32 Score=208.13 Aligned_cols=259 Identities=50% Similarity=0.854 Sum_probs=216.0
Q ss_pred ccCCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCC-----------CceeeEEEecCCCCceeEEEeecc
Q 022871 13 LLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYN 81 (291)
Q Consensus 13 ~~~~~~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 81 (291)
...+++.+-.+..|+++.|.|..++++||+++|||++...++.+. +.|.-.++++|+...+++++++.+
T Consensus 7 ~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYN 86 (299)
T KOG2943|consen 7 LLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYN 86 (299)
T ss_pred hhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEec
Confidence 446777788999999999999999999999999999998877776 688889999999999999999999
Q ss_pred CCCCcccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCCceeEEeee
Q 022871 82 YGVTSYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRV 161 (291)
Q Consensus 82 ~~~~~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v 161 (291)
+++..+..|.++-||.+.++|+-...+.+...|.+ . +....+++.||||+.|++.+..+.+.++..|.|+|
T Consensus 87 YgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~--------~-~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~V 157 (299)
T KOG2943|consen 87 YGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK--------G-SGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNV 157 (299)
T ss_pred cCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc--------c-cceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEe
Confidence 99999999999999999999998877777666542 1 22334889999999999999888999999999999
Q ss_pred CCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhhHHHHH
Q 022871 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAEVVN 241 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~~l~ 241 (291)
+|+++++.||.+.||+++.+. +..++..+++++++ ...|+|+.+.+......+.+...+++..+++..+.+.+
T Consensus 158 gdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i- 230 (299)
T KOG2943|consen 158 GDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI- 230 (299)
T ss_pred hhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH-
Confidence 999999999999999998764 33456667777655 58999999988877667667677777788888888888
Q ss_pred HHHHHhCCeeecCCcc--cCCCC-ceEEEEECCCCCeEEEEechhhhhhhhc
Q 022871 242 LVTQELGGKITRQPGS--IPGLN-TKITSFVDPDGWKTVLVDNEDFLKEIQS 290 (291)
Q Consensus 242 ~~~~~~G~~~~~~p~~--~~~~~-~~~~~~~Dp~G~~iel~~~~~~~~~~~~ 290 (291)
+..+.++..+..+ .|+.. ..+.-+.||||+.|+|+...++.+..++
T Consensus 231 ---K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk~ 279 (299)
T KOG2943|consen 231 ---KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSKI 279 (299)
T ss_pred ---HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhcc
Confidence 8887777666544 34422 2446679999999999999998877654
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=100.00 E-value=2.8e-30 Score=218.52 Aligned_cols=237 Identities=17% Similarity=0.219 Sum_probs=164.1
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
|+++.|++|.|+|++++.+||+++|||+...+.. .+ ..|+..+..... +.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~~~~--~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSRAHR--IAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCCceE--EEEEECC-------cCCeeeEeeee
Confidence 5789999999999999999999999999765422 11 235455432222 2222211 13678999999
Q ss_pred CC---HHHHHHHHHHcCCeEecCCccc--CCCceEEEEEECCCCCEEEEEeCCCC------------------CCCceeE
Q 022871 101 ED---VYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRGPT------------------PEPLCQV 157 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~~~~~------------------~~~~~hv 157 (291)
+| ++++.++|+++|+++...+... ..+....++|.||+||.+|+...... +.++.||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 88 8899999999999987654321 12233458999999999999964321 2268899
Q ss_pred EeeeCCccccHHHHHhhhCCeeeeeeccCC--c-ceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchh
Q 022871 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPE--Y-KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.|.|+|++++.+||+++|||++........ + .+...++...+. ++.+.+.. . +..++++|++|.|+|++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~-~-----~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAA-G-----PSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEec-C-----CCCCceEEEEEEcCCHH
Confidence 999999999999999999999876532211 1 112344543222 33344422 1 12457899999999866
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
++ .++.++|+++|+ ....|.+++.++.+++|++||+|++||+...
T Consensus 219 ~v-~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 219 DV-GLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HH-HHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 53 222344499999 5667777665567889999999999999864
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.91 E-value=1.3e-22 Score=175.92 Aligned_cols=224 Identities=22% Similarity=0.368 Sum_probs=152.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCC--CCcc--cCCCCeeEEE
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG--VTSY--DIGTGFGHFA 97 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~g~~~i~ 97 (291)
.+++|+.+.|+|++++++||++.|||+...+.....+. ..+.+..| +..+.+....... ...+ ..|+|++|+|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G--~~~l~L~~~~~~~s~~~~~~~~hg~gv~~ia 77 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG--QINFVLTAPYSSDSPAADFAAKHGDGVKDVA 77 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC--CEEEEEecCCCCCchHHHHHHhCCCceEEEE
Confidence 36899999999999999999999999998773322221 22333432 3333332221111 1111 2678999999
Q ss_pred EEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC---------------------C----CC
Q 022871 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP---------------------T----PE 152 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~---------------------~----~~ 152 (291)
|.|+|++++++++.++|+.+..+|.....|...+..++.++|..+.|++... . ..
T Consensus 78 f~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (353)
T TIGR01263 78 FRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGLI 157 (353)
T ss_pred EEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCeE
Confidence 9999999999999999999887765441123333445666777777666321 0 12
Q ss_pred CceeEEeeeC--CccccHHHHHhhhCCeeeeeeccCC--cc-eeEEEecccCCCceeEEEeeeecCc---c------eec
Q 022871 153 PLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YK-YTLAMLGYAEEDQTTVLELTYNYGV---T------EYT 218 (291)
Q Consensus 153 ~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~l~~~~~~---~------~~~ 218 (291)
.++|++++|. |++++..||+++|||++........ .. .+..+.. ..+...++|..+... . ..+
T Consensus 158 ~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~---~~g~~~i~L~ep~~~~~~s~i~~fl~~~ 234 (353)
T TIGR01263 158 AIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS---PDGKVKIPLNEPASGKDKSQIEEFLEFY 234 (353)
T ss_pred EeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC---CCCcEEEEEeccCCCCCCCHHHHHHHHc
Confidence 4899999999 9999999999999999876544221 11 1222222 122466777653211 1 123
Q ss_pred cCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCC
Q 022871 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 219 ~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p 255 (291)
.|+|++||||.|+|+++++++| +++|++++..|
T Consensus 235 ~g~Gv~HiAf~vdDi~~~~~~l----~~~Gv~~l~~P 267 (353)
T TIGR01263 235 NGAGVQHIALNTDDIVRTVRAL----RARGVEFLDTP 267 (353)
T ss_pred CCCCccEEEEEcCCHHHHHHHH----HHcCCccCcCC
Confidence 4789999999999999999999 99999998877
No 7
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.87 E-value=2.2e-20 Score=160.63 Aligned_cols=224 Identities=17% Similarity=0.256 Sum_probs=159.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCc--eeeEEEecCCCCceeEEEeeccCC------------------
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK--YSNAFLGFGPEQSHFVVELTYNYG------------------ 83 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------ 83 (291)
++||.+.|.|...+..||+..|||+.+.......+. .....++ ++...+++.-.....
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r--~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLR--SGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFS 78 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEE--eCCEEEEEeCCCCCccccccccccccccccccC
Confidence 689999999999999999999999998876542222 2233343 345555443321110
Q ss_pred ---CCcc--cCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCC----CceEEEEEECCCCCEEEEEeCCC-----
Q 022871 84 ---VTSY--DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKG----GTTHIAFVKDPDGYIFELIQRGP----- 149 (291)
Q Consensus 84 ---~~~~--~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~----g~~~~~~~~dp~G~~iel~~~~~----- 149 (291)
...+ ..|+++..|+|.|+|++++++++.++|+....+|....+ |...+.-++.++|..+.|+++..
T Consensus 79 ~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~~~ 158 (398)
T PLN02875 79 SDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDGAK 158 (398)
T ss_pred cHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCCCc
Confidence 0111 267899999999999999999999999998877665432 23445667888888888887421
Q ss_pred ----------C--------CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCc-----ceeEEEecccCCCceeEE
Q 022871 150 ----------T--------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY-----KYTLAMLGYAEEDQTTVL 206 (291)
Q Consensus 150 ----------~--------~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l 206 (291)
. ...++|+++.|.+++.+..||+++|||+..+.....+. +.....+..+ +....+
T Consensus 159 f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v~i 236 (398)
T PLN02875 159 FLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMVLL 236 (398)
T ss_pred cCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcEEE
Confidence 0 12589999999999999999999999998765443221 1233444422 234667
Q ss_pred EeeeecCc----ce------eccCcceeEEEEEecchhhhHHHHHHHHHHh----CCeeecCC
Q 022871 207 ELTYNYGV----TE------YTKGNAYAQVAISTDDVYKSAEVVNLVTQEL----GGKITRQP 255 (291)
Q Consensus 207 ~l~~~~~~----~~------~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~----G~~~~~~p 255 (291)
+|..+... .+ ...|+|++||||.|+||.+++++| +++ |++++..|
T Consensus 237 pLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~L----ra~~~~~Gv~fL~~P 295 (398)
T PLN02875 237 PLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREM----RARSHIGGFEFMPPP 295 (398)
T ss_pred EeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHH----HhccccCCeecCCCC
Confidence 77665321 11 235789999999999999999999 998 99999865
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.85 E-value=1.8e-19 Score=137.74 Aligned_cols=138 Identities=64% Similarity=1.076 Sum_probs=103.8
Q ss_pred ccCCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCC
Q 022871 13 LLEWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG 92 (291)
Q Consensus 13 ~~~~~~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 92 (291)
.+..++...++++|+.|.|+|++++.+||+++|||++..+...+...+..+++++++......+.+.......+...+.+
T Consensus 7 ~~~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g 86 (150)
T TIGR00068 7 LVADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNG 86 (150)
T ss_pred cccCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCc
Confidence 34456677899999999999999999999999999987765544444455666654433344455543322223334558
Q ss_pred eeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Q 022871 93 FGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 93 ~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
+.|++|.|+|+++++++|.++|+++...+...+.+....+||+||+|++|||++....
T Consensus 87 ~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 144 (150)
T TIGR00068 87 FGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKST 144 (150)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCch
Confidence 8999999999999999999999998877655555555568899999999999987643
No 9
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.84 E-value=5.1e-20 Score=140.83 Aligned_cols=137 Identities=45% Similarity=0.786 Sum_probs=103.7
Q ss_pred CCCCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEE
Q 022871 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 149 ~~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (291)
....++.|+.|.|.|++++.+||+++|||++......++..+.+.+++.+.......+++..+.+......+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 45678999999999999999999999999986554434444455555543332334555544333222233457899999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhhhhhh
Q 022871 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEIQ 289 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~~ 289 (291)
.|+|++++++++ .++|+++..+|...+....+.+||+||+|++|||++.....+.||
T Consensus 93 ~v~dld~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 149 (150)
T TIGR00068 93 GVDDVYKACERV----RALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLG 149 (150)
T ss_pred ecCCHHHHHHHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhcc
Confidence 999999999999 999999888876555544577899999999999999999888887
No 10
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=5e-20 Score=146.61 Aligned_cols=132 Identities=33% Similarity=0.591 Sum_probs=106.7
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCC---------------CceeEEEeeeecCcc
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEE---------------DQTTVLELTYNYGVT 215 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~ 215 (291)
...+.|+.|.|.|++++++||+++|||++..+...++.++.+++++.++. .....|||+.+++..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 45689999999999999999999999999888777777888998864321 113589998877644
Q ss_pred e------eccC----cceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhh
Q 022871 216 E------YTKG----NAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 216 ~------~~~~----~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
. +..+ .|+.|++|.|+|++++++++ ++.|+++...|...++ .+.+|++||||++|||+|.....
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL----~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF----EELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHH----HHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 1 3333 37999999999999999999 9999999988765443 47899999999999999988766
Q ss_pred hhh
Q 022871 286 KEI 288 (291)
Q Consensus 286 ~~~ 288 (291)
+-.
T Consensus 227 ~~~ 229 (233)
T PLN02367 227 TTT 229 (233)
T ss_pred ccc
Confidence 443
No 11
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.83 E-value=1.8e-18 Score=137.82 Aligned_cols=194 Identities=21% Similarity=0.306 Sum_probs=131.7
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
..+.+..+.|.|+|++.+..||+++||+++..+... ...++.+.. ..+.++-.+. ...+.....|+.|++|.
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg~-~LL~L~q~~~-a~~~~~~~aGLyH~AfL 78 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGGT-PLLTLEQFPD-ARRPPPRAAGLYHTAFL 78 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCCE-EEEEEEeCCC-CCCCCccccceeeeeee
Confidence 457789999999999999999999999999887653 355666543 3333333222 22233456699999999
Q ss_pred eCC---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCC--------------------------
Q 022871 100 TED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT-------------------------- 150 (291)
Q Consensus 100 v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~-------------------------- 150 (291)
+++ +..+..++...|..+... .+.. -...+||.||+||-||+.-.++.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~Ga-~DH~--vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~ 155 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLVGA-SDHL--VSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEA 155 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCccccc-Ccch--hheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhc
Confidence 974 777888999999887522 2222 22358999999999999987531
Q ss_pred ----------CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEe-eeecCccee--
Q 022871 151 ----------PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLEL-TYNYGVTEY-- 217 (291)
Q Consensus 151 ----------~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l-~~~~~~~~~-- 217 (291)
...|.||.|.|.|++++.+||.++|||.+..... ...|+..+.- ++.+.. +++......
T Consensus 156 ~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~Y--HHHia~N~W~s~~~~~~~ 227 (265)
T COG2514 156 TKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDY--HHHLAANTWNSRGARPRN 227 (265)
T ss_pred cccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCc--ceeEEEeccccCCCCCCC
Confidence 1248999999999999999999999999776511 3344554333 333332 122111111
Q ss_pred ccCcceeEEEEEecc
Q 022871 218 TKGNAYAQVAISTDD 232 (291)
Q Consensus 218 ~~~~~~~h~~~~v~d 232 (291)
..-.|+..+.+.+.+
T Consensus 228 ~~~~GLa~~~i~~~~ 242 (265)
T COG2514 228 ANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCcceEEEEcCC
Confidence 122366677777766
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.83 E-value=3.8e-19 Score=132.54 Aligned_cols=125 Identities=56% Similarity=0.999 Sum_probs=94.8
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHHH
Q 022871 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~ 107 (291)
+|.|+|++++++||+++|||++..+...+...+..+++..++......+++.......++..+.++.|+||.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999988776555556667777665433334455544333334445668999999999999999
Q ss_pred HHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCC
Q 022871 108 ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPE 152 (291)
Q Consensus 108 ~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~ 152 (291)
++|+++|+++...+...+++....++|+||||++|||++....+.
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~ 125 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 125 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccccc
Confidence 999999999887665555555555788999999999999875443
No 13
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=5.4e-19 Score=140.70 Aligned_cols=128 Identities=36% Similarity=0.670 Sum_probs=101.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCC---------------ceeEEEeeccCCC
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNYGV 84 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 84 (291)
.=-.++|++|.|+|++++++||+++|||++..+.+.++.++..++++.++.. ....+++.++.+.
T Consensus 72 ~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~ 151 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGT 151 (233)
T ss_pred CCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCC
Confidence 3567899999999999999999999999999998888888888888653310 1246777765543
Q ss_pred C------cccCC----CCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 85 T------SYDIG----TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 85 ~------~~~~~----~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
. .+..+ .|+.||||.|+|+++++++|+++|+.+...|....+ ...++++||||++|||++...
T Consensus 152 e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 152 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 2 13322 489999999999999999999999999877665443 335889999999999999763
No 14
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=3.8e-18 Score=133.30 Aligned_cols=127 Identities=35% Similarity=0.651 Sum_probs=96.4
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCC---------------ceeEEEeeccCCC
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQ---------------SHFVVELTYNYGV 84 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 84 (291)
.=-+++|++|.|+|++++++||+++|||++..+...+...+..++++.++.. ....+++..+...
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 3578999999999999999999999999999887766667777887643211 1235666644322
Q ss_pred Cc------cc----CCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 85 TS------YD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 85 ~~------~~----~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.. +. .+.|+.|++|.|+|+++++++|+++|+.+...|.... + ..+++++||+|++|||++..
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~-~-~~~~fi~DPdG~~IEl~e~~ 175 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK-M-KGLAFIKDPDGYWIEIFDLK 175 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC-c-eeEEEEECCCCCEEEEEECC
Confidence 11 22 2248999999999999999999999999886654332 2 34578899999999999975
No 15
>PRK10291 glyoxalase I; Provisional
Probab=99.81 E-value=5.1e-19 Score=131.81 Aligned_cols=122 Identities=50% Similarity=0.902 Sum_probs=91.2
Q ss_pred EeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhhH
Q 022871 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~ 237 (291)
.|.|.|++++.+||+++|||++......++..+.+.++..++......+++..+.+...+..+++..|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999987655445555667766544332334566654333222334568899999999999999
Q ss_pred HHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 238 EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 238 ~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+++ ++.|+++..++...+++..+.+||+||||++|||++.+.
T Consensus 81 ~~l----~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKI----RQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHH----HHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999 999999887766555533466889999999999999764
No 16
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=146.04 Aligned_cols=231 Identities=21% Similarity=0.329 Sum_probs=160.6
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC-----CcccCCCCee
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-----TSYDIGTGFG 94 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~ 94 (291)
.+.+++||.+.|.|...+.+||+..|||++....+.+.+........+.++...+++.-...... .-...|.|+.
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 48999999999999999999999999999988654443321122222223334443322211111 1223677899
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEecCCcccCC--CceEEEEEECCCCCEEEEEeCCCC----------------------
Q 022871 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQRGPT---------------------- 150 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~~~~~~---------------------- 150 (291)
.+||+|+|++++.+.+.++|+++..+|.+..+ |..+++.+..+.-....+++...-
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~~ 173 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLPK 173 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCCc
Confidence 99999999999999999999999988766543 566678888887666677765521
Q ss_pred --CCCceeEEeeeC--CccccHHHHHhhhCCeeeeeeccCCcc-----eeEEEecccCCCceeEEEeeeecCcc------
Q 022871 151 --PEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYK-----YTLAMLGYAEEDQTTVLELTYNYGVT------ 215 (291)
Q Consensus 151 --~~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~l~~~~~~~------ 215 (291)
...++|++.+++ .++.+.+||.++|||...+.++...-+ .+.+.+. +......+.+..+.+..
T Consensus 174 ~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~ksQI 251 (381)
T KOG0638|consen 174 GGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKKSQI 251 (381)
T ss_pred cceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccHHHH
Confidence 135899999999 578899999999999977766533211 1112222 11112233332222111
Q ss_pred ----eeccCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCc
Q 022871 216 ----EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 216 ----~~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.++.|+|++|+++.++||-++++.+ +++|.++..+|.
T Consensus 252 qeyv~y~gG~GvQHiaL~tedIi~Ai~~l----r~rG~eFLs~Ps 292 (381)
T KOG0638|consen 252 QEYVEYHGGAGVQHIALNTEDIIEAIRGL----RARGGEFLSPPS 292 (381)
T ss_pred HHHHHhcCCCceeeeeecchHHHHHHHHH----HhcCCccccCCH
Confidence 2568899999999999999999999 999999998874
No 17
>PRK11478 putative lyase; Provisional
Probab=99.80 E-value=4.4e-18 Score=126.69 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeecc---CCCCcccCCCCeeE
Q 022871 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN---YGVTSYDIGTGFGH 95 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~ 95 (291)
+.+++++|++|.|+|++++.+||+++|||++..+...+........+..+. . ..+++... ..........|+.|
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG-Q--YVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCC-C--cEEEEEEecCCCCCCCCCCCCceeE
Confidence 468899999999999999999999999999864422211111111222222 2 22333321 11111123357899
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++|.|+|+++++++|+++|+++...+....+|. .++||+||+|+.|||++.
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~-~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQK-RFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccCCCCCC-EEEEEECCCCCEEEEEeC
Confidence 999999999999999999999765433333444 458999999999999873
No 18
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=1e-18 Score=131.34 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=93.6
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce------eccCcceeEEE
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~~ 227 (291)
++|++|.|.|++++.+||+++|||++.......+ ....++.. ....+.+........ ...+++..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5799999999999999999999999776543221 22333331 134555543222111 11446889999
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhhhhh
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEI 288 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~ 288 (291)
|.|+|++++++++ +++|++++.+|...++ +.+.++++||+|++|||++++.+.+..
T Consensus 75 ~~V~Dvda~~~~l----~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~~~ 130 (136)
T cd08342 75 FRVDDAAAAYERA----VARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKGPF 130 (136)
T ss_pred EEeCCHHHHHHHH----HHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCCcc
Confidence 9999999999999 9999999999887565 468999999999999999998886654
No 19
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.80 E-value=5.6e-18 Score=128.33 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=87.5
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCC-----------CceeeEEEecCCCCceeEEEeecc---CCC-C
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYN---YGV-T 85 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~ 85 (291)
|++++||+|.|+|++++++||++ |||++..+...++ ......++...++. ..+++... ... .
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~--~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGH--SRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCC--ceEEEEEecCCCCcCc
Confidence 57899999999999999999998 9999865543221 12233444432222 23444321 111 1
Q ss_pred ---cccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 86 ---SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 ---~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
....+.|+.|+||.|+|+++++++|+++|+++..++...+++.+ .+|++||+|+.|||++.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r-~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYR-LCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeE-EEEEECCCCCEEEeeec
Confidence 11235589999999999999999999999998876655554444 58999999999999984
No 20
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.79 E-value=3.5e-18 Score=133.51 Aligned_cols=130 Identities=32% Similarity=0.582 Sum_probs=99.3
Q ss_pred CCCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCC---------------ceeEEEeeeecCc
Q 022871 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEED---------------QTTVLELTYNYGV 214 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~~~~~ 214 (291)
...++.|+.|.|.|++++++||+++|||++..+...++.+++++++..+... ....|+|+.+.+.
T Consensus 24 ~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~ 103 (185)
T PLN03042 24 KGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGT 103 (185)
T ss_pred CCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCC
Confidence 3467999999999999999999999999988776656666777777532210 1347888865432
Q ss_pred ce------ec----cCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhh
Q 022871 215 TE------YT----KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 215 ~~------~~----~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
.. +. .+.++.|++|.|+|++++++++ ++.|+++...|....+ .+++|++||||++|||++...+
T Consensus 104 ~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L----~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 104 ESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERF----EKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccccCCCCCCCccEEEEEcCCHHHHHHHH----HHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCCc
Confidence 21 11 1248899999999999999999 9999999877654322 4678899999999999997765
Q ss_pred h
Q 022871 285 L 285 (291)
Q Consensus 285 ~ 285 (291)
.
T Consensus 178 ~ 178 (185)
T PLN03042 178 G 178 (185)
T ss_pred h
Confidence 4
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.78 E-value=1.4e-17 Score=122.39 Aligned_cols=120 Identities=53% Similarity=0.944 Sum_probs=88.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC-CcccCCCCeeEEEEEeCC
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIATED 102 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~v~d 102 (291)
+.|++|.|+|++++.+||+++|||++..+...+++.+..+++..++......+.+...... .+...+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999987655444455566676543101223444332221 223344578999999999
Q ss_pred HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
++++++++.++|+++...+... ++. .+++|+||+|+++||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~-~~~-~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG-GMK-GIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC-CCc-eEEEEECCCCCEEEeC
Confidence 9999999999999998876655 333 4588999999999985
No 22
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=1.7e-17 Score=121.60 Aligned_cols=115 Identities=45% Similarity=0.825 Sum_probs=86.7
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCC-----------CceeeEEEecCCCCceeEEEeeccCCCCcccCC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE-----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIG 90 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (291)
.++.|++|.|+|++++++||+++|||++..+...++ +.+..+++.+++......+++..+.+..++..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999887765554 334445566544445667888876655555555
Q ss_pred CCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 91 TGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 91 ~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
.+ |++|.|++. ++.++|+++|+.+...+. + +++++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 566666666 556999999998876443 2 5889999999999974
No 23
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.77 E-value=1.1e-17 Score=122.98 Aligned_cols=120 Identities=47% Similarity=0.812 Sum_probs=90.1
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc-ceeccCcceeEEEEEecc
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~~~v~d 232 (291)
+.|+.|.|+|++++.+||+++|||++.......+.....+++..+.......+++....+. .....+++..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876544444345555665433112455666544332 122334578899999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++++++++ +++|+++..+|... + +++.+||+||+|++|||+
T Consensus 81 id~~~~~l----~~~G~~~~~~~~~~-~-~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERL----EEMGVEVTKPPGDG-G-MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHH----HHCCCEEeeCCccC-C-CceEEEEECCCCCEEEeC
Confidence 99999999 99999999888765 2 358899999999999985
No 24
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.5e-17 Score=121.66 Aligned_cols=124 Identities=26% Similarity=0.317 Sum_probs=84.8
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCC-cccCCCCeeEEEEE
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-SYDIGTGFGHFAIA 99 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~i~~~ 99 (291)
+.+++|++|.|+|++++.+||+++|||++......++.......+... ....+.+-........ ....+.|++|++|.
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~ 79 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GGYQLELFSFPNPPERPSYPEACGLRHLAFS 79 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CCcEEEEEEcCCCCCCCCCCcCCCceEEEEE
Confidence 368999999999999999999999999987654332221112223321 2222222111111111 11234588999999
Q ss_pred eCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|+|+++++++|+++|+++...+....++.. ++|++||+|++|||++
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 80 VEDIEAAVKHLKAKGVEVEPIRVDEFTGKR-FTFFYDPDGLPLELYE 125 (125)
T ss_pred eCCHHHHHHHHHHcCCccccccccCCCceE-EEEEECCCCCEEEecC
Confidence 999999999999999998776544444443 5899999999999975
No 25
>PLN02300 lactoylglutathione lyase
Probab=99.77 E-value=8e-18 Score=142.21 Aligned_cols=133 Identities=47% Similarity=0.781 Sum_probs=101.0
Q ss_pred CCCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEE
Q 022871 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
...++.|++|.|+|++++.+||+++|||++..+...++..+...++..++...+..+++....+......++++.|++|.
T Consensus 21 ~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hia~~ 100 (286)
T PLN02300 21 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHFGIA 100 (286)
T ss_pred ccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEEEEE
Confidence 46789999999999999999999999999876544444445555555443333456677544333222345678899999
Q ss_pred ecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhhh
Q 022871 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLK 286 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~ 286 (291)
|+|++++++++ +++|+++...|...++++.+.+|++||+|+.|||+++....+
T Consensus 101 v~dvd~~~~~l----~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~ 153 (286)
T PLN02300 101 VEDVAKTVELV----KAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPE 153 (286)
T ss_pred eCCHHHHHHHH----HHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCC
Confidence 99999999999 999999988887766544577899999999999999765433
No 26
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.77 E-value=1e-17 Score=126.97 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=89.0
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccC-----------CcceeEEEecccCCCceeEEEeeeecCcce----
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-----------EYKYTLAMLGYAEEDQTTVLELTYNYGVTE---- 216 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---- 216 (291)
.+++|++|.|.|++++.+||++ |||++....... .....+.++..+. ....++|.....+..
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCcC
Confidence 4689999999999999999998 999875443211 1123444444222 255677766432211
Q ss_pred ---eccCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 217 ---YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ---~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
...+.++.|++|.|+|++++++++ +++|+++..+|...++ +.+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l----~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARL----RKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHH----HHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 123457889999999999999999 9999998876655444 45889999999999999984
No 27
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=2.5e-17 Score=121.73 Aligned_cols=119 Identities=27% Similarity=0.419 Sum_probs=84.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCc---ccCCCCeeEEEEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS---YDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~i~~~ 99 (291)
+++|++|.|+|++++++||+++|||++..+...+..++..+|+.+++ . ..+++.......+ .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD-G--ARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC-C--cEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 57999999999999999999999999865543333334455666542 2 2234432221111 1233478999999
Q ss_pred eC---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
|+ |+++++++|+++|+++...|...+.|.+. ++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~-~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDGYYE-SVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEE-EEEECCCCCEEEeC
Confidence 95 58999999999999988766555555443 67999999999973
No 28
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.76 E-value=5.5e-17 Score=121.91 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=88.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC-C---c--ccCCCCeeEEE
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-T---S--YDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~g~~~i~ 97 (291)
|+|+.|.|+|++++++||+++|||++..+...+ .....++.. +... +.+...... . . ...+.++.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~--g~~~--l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQ--GDIN--FVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEc--CCEE--EEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999988764432 122333432 2322 333322111 1 0 12456899999
Q ss_pred EEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Q 022871 98 IATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
|.|+|+++.+++|+++|+++..+|...+++.+ .++++||+|++|+|++.+..
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~-~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGELK-IAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCeEE-EEEEeccCCcEEEEEecCCC
Confidence 99999999999999999999988887565544 58899999999999998754
No 29
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=9.8e-17 Score=121.00 Aligned_cols=118 Identities=21% Similarity=0.373 Sum_probs=86.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
||.+++|+.|.|+|++++.+||+++|||++..+.. ...++..++ . .+.+...........+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g--~--~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG--L--WIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC--e--EEEeeccCCCCCccCCCCeeEEEEE
Confidence 57899999999999999999999999999876532 134554432 2 2223222211122234468899999
Q ss_pred eC--CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 100 TE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++ |+++++++|+++|+++...+...+++.. .++|+||+|++|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~-~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDERDKK-SIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCCCce-EEEEECCCCCEEEEEeCC
Confidence 97 9999999999999998766555554444 488999999999999875
No 30
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=3.2e-17 Score=122.87 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=88.8
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
+.++.|+.|.|.|++++.+||+++|||++..... . ...++.......+..+.+..... ...++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 4678999999999999999999999999765432 1 12334432222244555543211 135889999999
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhh
Q 022871 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
+|++++.+ +.++|+++|+++...|.+++..+.+++||+||+|++|||.......
T Consensus 71 ~d~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~ 124 (134)
T cd08360 71 GDIDEVML-GGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYV 124 (134)
T ss_pred CCHHHHHH-HHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccccc
Confidence 99777664 2344499999988778777665557799999999999999765544
No 31
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.75 E-value=1e-16 Score=123.85 Aligned_cols=126 Identities=30% Similarity=0.369 Sum_probs=84.9
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEee----ec--------------CCCceeeEEEecCCCCceeEEEeeccC
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKR----DV--------------PEEKYSNAFLGFGPEQSHFVVELTYNY 82 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (291)
.++++||+|.|+|++++++||+++|||++..+. .. ........++..++. . .+++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~--~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDR-I--GVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCC-C--cEEEEecc
Confidence 367999999999999999999999999886421 00 011244555654432 1 23343322
Q ss_pred CC-Cc---c-cCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCC-ccc-CC-CceEEEEEECCCCCEEEEEeCCC
Q 022871 83 GV-TS---Y-DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREP-GPL-KG-GTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 83 ~~-~~---~-~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~-~~~-~~-g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
.. .+ + ..+.|+.|+||.|+|+++++++|+++|+++...+ ... ++ ....++|++||||+.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 11 11 1 1246899999999999999999999998754322 211 11 12346899999999999999864
No 32
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.75 E-value=1.4e-16 Score=120.50 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=84.2
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCc-eeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
.+++|+|++|.|+|++++.+||+++|||++..+...+++. ....|+..+. ..+. +.+... .+.+++|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~~h~-~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-KPHD-IAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-Ccce-EEEecC-------CCCCceEEEE
Confidence 4789999999999999999999999999987664332222 2234554332 2222 222211 1347899999
Q ss_pred EeCCHHH---HHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 99 ATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 99 ~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
.|+|+++ +.++|.++|+++...|....-+...++||+||+|+.|||...
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999877 568999999998765544332233458999999999999875
No 33
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.75 E-value=4.8e-17 Score=124.62 Aligned_cols=119 Identities=26% Similarity=0.337 Sum_probs=86.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecC-CCceeeEEEecCCCCcee---EEEeeccCCCCcccCCCCeeEEEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHF---VVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+|+||+|.|+|++++++||+++|||++..+...+ .+.....++..++..... .+.+.. ..+.+++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5799999999999999999999999987664433 223345666653321100 011110 11458999999
Q ss_pred EeCCHHHHH---HHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 99 ATEDVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+|++++. ++|+++|+++...+.....+...++|++||+|++|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 99999999987666555445555789999999999999765
No 34
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.74 E-value=1.2e-17 Score=128.00 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=85.9
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccC-CcceeEEEecccCCC---ceeEEEeeeecCcceeccCcceeEEEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEED---QTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (291)
++.||+|.|+|++++++||+++||+++......+ +......++..+... ....+.+.. ..++++.|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999986543332 122334444432210 011121211 11468999999
Q ss_pred EecchhhhH---HHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhh
Q 022871 229 STDDVYKSA---EVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 229 ~v~di~~~~---~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
.|+|++++. ++| ++.|+++...|.++..+...++|++||+|++|||......
T Consensus 74 ~v~die~~~~~~~~L----~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~ 128 (153)
T cd07257 74 EVHDFDAQGLGHDYL----REKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDL 128 (153)
T ss_pred EcCCHHHHHHHHHHH----HHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCcee
Confidence 999988876 555 9999999888887765445678999999999999976543
No 35
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.74 E-value=5.9e-17 Score=122.64 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=84.2
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcce-eEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEE
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKY-TLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
+.++.|++|.|+|++++.+||+++|||++..+...+++.. ...++..... .+.+.+.. . .++++.|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~--~-----~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG--G-----PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec--C-----CCCCceEEEEE
Confidence 4578999999999999999999999999766543222211 2233332222 23333321 1 13578999999
Q ss_pred ecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 230 TDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 230 v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|+|++++.+. .++|+++|+++...|.++..++++.+||+||+||+|||.+.
T Consensus 75 v~d~~~l~~~-~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKA-GDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHH-HHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9997765333 34459999998878776553345889999999999999764
No 36
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1e-16 Score=117.47 Aligned_cols=114 Identities=32% Similarity=0.580 Sum_probs=83.0
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCC-----------cceeEEEecccCCCceeEEEeeeecCcceeccCc
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGN 221 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (291)
++.|++|.|+|+++|++||+++|||++..+...++ +.+...++...++..+..++|+.+.+..+++.|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999876554443 3334344543223345688998877655555555
Q ss_pred ceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 222 AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 222 ~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+ |++|.|++. ++.+++ ++.|+++...|. .++++.||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l----~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNA----KKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHH----HHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666664 455777 999998876554 27899999999999974
No 37
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.73 E-value=7.1e-17 Score=124.81 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeee----cc--------------CCcceeEEEecccCCCceeEEEeeeecC
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTV----DK--------------PEYKYTLAMLGYAEEDQTTVLELTYNYG 213 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 213 (291)
..++||+|.|+|++++.+||+++|||++..+. .. ....+.+.++..++ +..++|.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 46899999999999999999999999864211 00 01124445555322 34577766543
Q ss_pred ccee-----ccCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCccc--CC-CCceEEEEECCCCCeEEEEechh
Q 022871 214 VTEY-----TKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSI--PG-LNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 214 ~~~~-----~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~--~~-~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
.... ..+.+..|++|.|+|++++++++ +++|+++...+... ++ ...+.+|++||||+.|||+++..
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERI----VAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHH----HHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 2211 12358899999999999999999 99998764433211 11 11278999999999999999765
No 38
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.73 E-value=2.4e-16 Score=116.17 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=82.4
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+++++|+.|.|+|++++.+||+++|||++..+.. ++ .+++..........+.+.. ....++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 6899999999999999999999999999876532 11 2344432111122233321 1234788999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
. |+++++++|+++|+++...|.....+....++|+||+||+||+....
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 78999999999999987654333323223589999999999998754
No 39
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=2.9e-16 Score=117.66 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=84.7
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++++|++|.|+|++++.+||+++|||++..+... ...++..+....+..+.+..... ...|++|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 6899999999999999999999999998765421 23455543222223343432211 1358999999999
Q ss_pred CHHHHH---HHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|++++. ++|.++|+++...+...+.+...++||+||+|+.|||....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 888766 59999999987655444444445589999999999999754
No 40
>PRK11478 putative lyase; Provisional
Probab=99.73 E-value=8.3e-17 Score=119.79 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=82.0
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCC-cceeEEEecccCCCceeEEEeeeecCcce---eccCcceeEEE
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-YKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVA 227 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~~ 227 (291)
.++.|++|.|+|++++.+||+++|||++.......+ ..+... +... ....+++.....+.. .+...+..|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999754321111 111111 1111 134566654221111 12234678999
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
|.|+|++++++++ +++|+++...+.. +..+.+++||+||+|+.|||+|
T Consensus 81 f~v~d~~~~~~~l----~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 81 FSVDDIDAAVAHL----ESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEeCCHHHHHHHH----HHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999 9999997643322 3234588999999999999987
No 41
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=1.1e-16 Score=118.20 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=81.6
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce---eccCcceeEEEEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQVAIS 229 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~~~~ 229 (291)
++.|++|.|.|++++.+||+++|||++......+..++...++..++ +..+++........ ....++..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999754432222233444444322 34566654221111 1123478999999
Q ss_pred ecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 230 TDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 230 v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
|+| ++++++++ +++|+++..+|...+. +.+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERL----RADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHH----HHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 965 66666666 9999999877754443 235678999999999983
No 42
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.72 E-value=7.7e-17 Score=119.70 Aligned_cols=119 Identities=30% Similarity=0.517 Sum_probs=84.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCC-C---Ccc--cCCCCeeEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG-V---TSY--DIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~g~~~i 96 (291)
+++|+.|.|+|++++.+||+++|||++......++.....+++..++. .+++..... . ..+ ..+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNT----KVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCE----EEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 579999999999999999999999998765433333445555655432 233332111 1 111 124578899
Q ss_pred EEEeCCHHHHHHHHHHcCCeEecC-CcccCCCceEEEEE--ECCCCCEEEEEe
Q 022871 97 AIATEDVYKLVENIRAKGGNVTRE-PGPLKGGTTHIAFV--KDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~-~~~~~~g~~~~~~~--~dp~G~~iel~~ 146 (291)
||.|+|+++++++|+++|+++..+ |...++|.. ..++ +||||+.||+++
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~-~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKP-VAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCE-EEEecccccCcEEEEecC
Confidence 999999999999999999998764 555555544 3556 799999999975
No 43
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=1.7e-16 Score=119.64 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=83.0
Q ss_pred eeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchh
Q 022871 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.||.|.|+|++++.+||+++|||++..+... ...++.......++.+.+.. ....++.|++|.|+|++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999997765321 23344432222233333321 12458999999998854
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+ +.++.++|+++|+++...|..++..+.+++|++||+|+.|||+....
T Consensus 69 ~-v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 D-IGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred H-HHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 3 33344555999999988888876555688999999999999987554
No 44
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=2.3e-16 Score=116.41 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=83.8
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc--c-eeccCcceeEEEE
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV--T-EYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-~~~~~~~~~h~~~ 228 (291)
.++.|++|.|.|++++.+||+++|||+........+.....+.+.... ...+++...... . ..+.+.+..|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 468999999999999999999999999765432222111112222111 234444332211 1 1123457889999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.|+|++++.+++ +++|+++...+....+ +.+.+|++||+|++|||.|
T Consensus 79 ~v~d~~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHL----KAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHH----HHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 999999999999 9999998776544333 4578999999999999975
No 45
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.71 E-value=8.1e-16 Score=119.37 Aligned_cols=124 Identities=22% Similarity=0.291 Sum_probs=87.2
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+.|.+|+|++|.|+|++++.+||+++|||++..+.....+.....++...+... .+.+..... ....++.|+||
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~l~~~~~----~~~~~~~hiaf 75 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVH--DVAYTRDPA----GARGRLHHLAY 75 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCce--eEEEecCCC----CCCCCceEEEE
Confidence 568999999999999999999999999999876643332222344555432222 222222111 12236899999
Q ss_pred EeCC---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|+++...|.....+...++|++||+|++|||....
T Consensus 76 ~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 76 ALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9985 5578899999999987666554433434588999999999999873
No 46
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.71 E-value=2.5e-16 Score=121.74 Aligned_cols=122 Identities=21% Similarity=0.229 Sum_probs=80.2
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
|+++.|++|.|+|++++.+||+++|||++.......++.....++.... ....+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 5679999999999999999999999999765433222222333343222 123343322 1245789999999
Q ss_pred cchhhhHHHHHHHHHHhCCe--eecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 231 DDVYKSAEVVNLVTQELGGK--ITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~--~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+|.++ +..+.++|+++|+. +...|..+...+.+++|++||+||.|||++..
T Consensus 72 ~~~~~-v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHN-IIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHH-HHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 87333 23333444999986 33445544433457899999999999998644
No 47
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.71 E-value=3.1e-16 Score=114.07 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=83.4
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecch
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDV 233 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di 233 (291)
+.|+.|.|+|++++++||+++||+++..... .+..+. ++..++ ...+.+....+.. ...+...|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~--~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYA--VFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceE--EEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999765432 122233 333222 1223333222211 1234678999999999
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+++.+++ +++|+++..+|...++ +++.+|++||+|+.|+|+|
T Consensus 73 ~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARV----EAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHH----HHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 9999999 9999999989887775 3589999999999999985
No 48
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.71 E-value=1.2e-16 Score=118.33 Aligned_cols=120 Identities=28% Similarity=0.437 Sum_probs=82.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeec--CCCceeeEEEecCCCCceeEEEeeccCCCCcccC---CCCeeEEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDV--PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDI---GTGFGHFA 97 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~i~ 97 (291)
||+||+|.|+|++++.+||+++|||++...... ........++..+.. .+.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999988662 222333444444333 33333322221111111 01344555
Q ss_pred EEe---CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEE
Q 022871 98 IAT---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 98 ~~v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+.+ +|+++++++|++.|+++...+.....+...++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 57888999999999999888777776666656899999999997
No 49
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.70 E-value=2.6e-16 Score=116.00 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
..++.|+.|.|+|++++.+||+++|||++..... +. ..++... .......+.+.. ...++..|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~~~~~~~-~~~~~~~~~l~~-------~~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--RVYLKAW-DEFDHHSIVLRE-------ADTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--eEEEEcc-CCCcccEEEecc-------CCCCCeeEEEEEe
Confidence 3578999999999999999999999999765421 11 2222221 111233444421 1234678999999
Q ss_pred c---chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 231 D---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+ |++++.+++ +++|+++...|.......++.+||+||+||+|||.+..+
T Consensus 70 ~~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 70 LDDADLEKLEARL----QAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CCHHHHHHHHHHH----HHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 7 566666666 999999877664433323578999999999999987643
No 50
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.70 E-value=3.5e-16 Score=119.94 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccC---CcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEE
Q 022871 150 TPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP---EYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 150 ~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (291)
.++++.|+.|.|+|++++.+||+++|||++....... +....+.++..+. .+..+.+... ..++++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 4678999999999999999999999999976542221 1123444454322 1333444321 123578999
Q ss_pred EEEecchhh---hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 227 AISTDDVYK---SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 227 ~~~v~di~~---~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+|.|+|+++ +.++| +++|+++..+|..++..+.+.+|++||+|++|||.....
T Consensus 78 af~V~d~~~l~~~~~~L----~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRV----RARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 999988554 45555 999999988887776555688999999999999987544
No 51
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.69 E-value=3.4e-16 Score=116.24 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=84.1
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce------eccCcceeEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~ 226 (291)
++.|+.|.|+|++++.+||+++|||+........+......++..+ ...++|....+... ...+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999976543222223344555432 24566654322111 0124577899
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecC-CcccCCCCceEEEE--ECCCCCeEEEEe
Q 022871 227 AISTDDVYKSAEVVNLVTQELGGKITRQ-PGSIPGLNTKITSF--VDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~-p~~~~~~~~~~~~~--~Dp~G~~iel~~ 280 (291)
+|.|+|++++.+++ +++|++++.+ |...++ +.+..|+ +||||+.||+.|
T Consensus 77 ~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETL----KEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHH----HHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 99999999999999 9999998764 544444 3355666 799999999975
No 52
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.69 E-value=1.5e-15 Score=116.43 Aligned_cols=122 Identities=19% Similarity=0.310 Sum_probs=87.0
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecC---CCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP---EEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 96 (291)
.-++|+||+|.|+|++++.+||+++|||++..+.... +......++..+.... .+.+... ..+.+++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHH--SLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCC--CEEEEcC------CCCceeEEE
Confidence 4678999999999999999999999999987653321 1123455555432211 2222211 123579999
Q ss_pred EEEeCCHH---HHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 97 AIATEDVY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 97 ~~~v~d~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+|.|+|++ +++++|+++|+++...+...+.+....+|++||+|+.|||.....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99998755 689999999999887665555444456999999999999987653
No 53
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=1e-15 Score=112.97 Aligned_cols=118 Identities=30% Similarity=0.508 Sum_probs=83.7
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCC---CCcccCCCCeeEEE
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYG---VTSYDIGTGFGHFA 97 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~i~ 97 (291)
|++++|+.|.|+|++++++||+++|||+.....+.. . ...+..++ . .+.+..... ......+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS--Q--KINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC--E--EEEEecCCCccCcCccCCCCCCceEE
Confidence 578999999999999999999999999987654321 1 23344333 2 233332111 11222456889999
Q ss_pred EEeCC-HHHHHHHHHHcCCeEecCCcccCC--CceEEEEEECCCCCEEEEEe
Q 022871 98 IATED-VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~d-~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~~ 146 (291)
|.+++ +++++++|.++|+++...+....+ +....++|+||+|+++|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998766654322 22345899999999999976
No 54
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1e-15 Score=112.48 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=80.2
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeec--cCCCCcccCCCCeeEEEEE
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY--NYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~i~~~ 99 (291)
+++.|+.|.|+|++++.+||+++|||++....+ . ...+. + ...+...... .....+...+.+..|++|.
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFE-G--GFALQEGYSWLEGISKADIIEKSNNFELYFE 71 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEe-c--cceeccchhhhccCCcccccccCCceEEEEE
Confidence 378999999999999999999999999864321 1 11111 1 1111100000 0001111123355799999
Q ss_pred eCCHHHHHHHHHHcCC-eEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 100 TEDVYKLVENIRAKGG-NVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~-~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|+|+++++++|+++|+ .+..+|...++|.+. ++|+|||||+|||.+.
T Consensus 72 v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~-~~~~DPdGn~iei~~~ 119 (120)
T cd09011 72 EEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRV-VRFYDPDKHIIEVGES 119 (120)
T ss_pred ehhhHHHHHHHHhcCCcEEecCcccCCCccEE-EEEECCCCCEEEEecc
Confidence 9999999999999986 677788888877654 8999999999999875
No 55
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=1.6e-15 Score=111.65 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=81.9
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
+.+++|+|+.|.|+|++++.+||+++|||++..+.+ ..+++...+......+.+... ...++.|++|
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af 68 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAW 68 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEE
Confidence 568999999999999999999999999999876632 134554322212222333211 2347899999
Q ss_pred EeC---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 99 ATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+ ++++++++++++|+++...+..... .. .++|+||+|+.+|+....
T Consensus 69 ~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~-~~-~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 69 RASSPEALERRVAALEASGLGIGWIEGDPGH-GK-AYRFRSPDGHPMELYWEV 119 (121)
T ss_pred EcCCHHHHHHHHHHHHHcCCccccccCCCCC-cc-eEEEECCCCCEEEEEEec
Confidence 997 5889999999999987433222222 22 488999999999998643
No 56
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.2e-15 Score=112.76 Aligned_cols=113 Identities=14% Similarity=0.204 Sum_probs=82.5
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
++.+|.|++|.|+|++++.+||+++|||++..+.. ...++..++.. + .+.+.... ++..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~-~-~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARD-H-TLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCcc-E-EEEEEeCC--------CceEEEEEE
Confidence 58899999999999999999999999999865432 14556654322 2 23232211 356789999
Q ss_pred eCC---HHHHHHHHHHcCCeEecCCcccC--CCceEEEEEECCCCCEEEEEeCC
Q 022871 100 TED---VYKLVENIRAKGGNVTREPGPLK--GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d---~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+| +++++++|+++|+++...+.... .+...+++|+|||||.||+....
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 975 99999999999998766543211 22334588999999999998764
No 57
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.68 E-value=2.7e-15 Score=111.92 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=81.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCc-eeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEK-YSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
||.+++|+.|.|+|++++.+||+++||+++..+....... ....++..++ ..+.+...... ...+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEE
Confidence 5789999999999999999999999999886653221100 0011222221 12333322111 1236899999
Q ss_pred EeC--CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 99 ATE--DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~--d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+ |+++++++|+++|+++... .....+....+||+||+||.+||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 997 7999999999999987643 233333334699999999999998653
No 58
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.68 E-value=1.7e-15 Score=110.18 Aligned_cols=114 Identities=24% Similarity=0.243 Sum_probs=81.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCH
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~ 103 (291)
+.|++|.|+|++++.+||+++|||++..... +.+ ..+++..++. . ...+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG-A--VGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc-c--EEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865542 112 2334444321 1 12222111111 1233567999999999
Q ss_pred HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|+++|+++..+|...+++.. .++++||+|+.++|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGVGR-FAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCcEE-EEEEECCCCCEEEeEC
Confidence 99999999999998888777765444 5999999999999975
No 59
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.68 E-value=3.8e-15 Score=115.07 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=79.9
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++|+||+|.|+|++++++||+++|||++......+.+.....++..++.. ..+.+.. ..++++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~--~~i~l~~-------~~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGV--HDTALTG-------GNGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCc--ceEEEec-------CCCCceeEEEEEcC
Confidence 58999999999999999999999999987554332232233444332211 1222221 12347899999997
Q ss_pred C---HHHHHHHHHHcCCeE--ecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 102 D---VYKLVENIRAKGGNV--TREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~--~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.. ...|.....+...++||+||+|+.||+....
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 5 777889999999863 2233222222334589999999999998654
No 60
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.68 E-value=2e-15 Score=111.02 Aligned_cols=116 Identities=25% Similarity=0.300 Sum_probs=81.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIA 99 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 99 (291)
+++++.|+.|.|+|++++.+||+++|||++....+ ..+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 47899999999999999999999999999875532 123443211112222323221 12478899999
Q ss_pred e---CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 100 T---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +|+++++++++++|+++...|.....+....+++.||+|++||+....
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 9 478999999999999987653333333334589999999999998653
No 61
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=4.9e-15 Score=109.12 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=84.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCC--cccCCCCeeEEEEEeCCH
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~i~~~v~d~ 103 (291)
+..|.|+|++++++||+++|||++......+++......+..++ ..+.+......... ....+.+..+++|.|+|+
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDV 79 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCH
Confidence 35689999999999999999999987654334433344455542 22333221111110 011334567899999999
Q ss_pred HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++++++.++|+++..++...++|.. .++++||+|++|+|.+
T Consensus 80 d~~~~~l~~~G~~v~~~~~~~~~g~~-~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 80 DAHYERARAAGAEILREPTDTPYGSR-EFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHCCCEEeeCccccCCCcE-EEEEECCCCCEEEEec
Confidence 99999999999999988888887765 4889999999999964
No 62
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2.6e-15 Score=109.69 Aligned_cols=117 Identities=24% Similarity=0.336 Sum_probs=82.4
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCC--cccCCCCeeEEEEEeCCH
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~i~~~v~d~ 103 (291)
||.|.|+|++++.+||+++|||++..+....++ ...+.+..... ....+.+....... ....+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGG-FRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCC-cEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 899999999999999999999999877542222 22333332221 13334443322221 112344788999999999
Q ss_pred HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
++++++|+++|+++...+...+++ ..++++||+|++|+|++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPYG--TVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCCc--eEEEEECCCCCEEEEeC
Confidence 999999999999998776444433 35899999999999975
No 63
>PRK06724 hypothetical protein; Provisional
Probab=99.67 E-value=3.6e-15 Score=110.42 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=77.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhc---CCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~L---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 96 (291)
++.+++||+|.|+|++++.+||+++| |++....... . .+...+.+ ..... ......|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~----------~--~g~~~l~l--~~~~~--~~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAY----------S--TGESEIYF--KEVDE--EIVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEee----------e--CCCeeEEE--ecCCc--cccCCCCceeE
Confidence 67899999999999999999999966 6665321111 1 11111111 11000 01123477899
Q ss_pred EEEe---CCHHHHHHHHHHcCCeEecCCcccC--CCceEEEEEECCCCCEEEEEeCC
Q 022871 97 AIAT---EDVYKLVENIRAKGGNVTREPGPLK--GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 ~~~v---~d~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
||.| +|+++++++|.++|+++...|...+ .++...++|+||||+.||+...+
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 7899999999999999877765543 22334588999999999998774
No 64
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.67 E-value=4.4e-15 Score=110.81 Aligned_cols=116 Identities=27% Similarity=0.386 Sum_probs=85.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHH
Q 022871 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 25 ~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~ 104 (291)
+||.|.|+|++++.+||+++||+++......+ +.....++..++. ...+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987664432 3234556665432 2233333221 1458899999999874
Q ss_pred ---HHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 105 ---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 105 ---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+++++|+++|+++...+...+.+...+++|+||+|++|||.+...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999887665555444455889999999999997754
No 65
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.67 E-value=1.9e-15 Score=112.73 Aligned_cols=114 Identities=22% Similarity=0.366 Sum_probs=80.3
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC--
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE-- 101 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~-- 101 (291)
|+||.|.|+|++++.+||+++|||++...... ..++..++ . .+.+.............++.|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~~------~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGEK------TAYFTIGG--T--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCCc------cceEeeCc--e--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 68999999999999999999999998654221 23444432 2 233322221111122347899999997
Q ss_pred CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+++++++|.++|+.+...+....++.. .++|+||+|++|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~-~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRK-SIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcce-EEEEECCCCCEEEEecCc
Confidence 4999999999999997655443333444 489999999999999875
No 66
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=9.1e-16 Score=112.71 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=79.9
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeee----ecCcceeccCcceeEEEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTY----NYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~~~h~~~ 228 (291)
++.++.|.|.|++++.+||+++|||++..... .. ..+ .. ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~-~~~-~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----EN-VTF-EG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ce-EEE-ec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 57889999999999999999999998753221 11 111 10 11111110 000111123345579999
Q ss_pred EecchhhhHHHHHHHHHHhCC-eeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 229 STDDVYKSAEVVNLVTQELGG-KITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~-~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.|+|++++++++ +++|+ +++.+|...++ +.+.+||+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l----~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKL----KRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHH----HhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999 99986 78888888887 46899999999999999875
No 67
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=1.4e-15 Score=111.08 Aligned_cols=117 Identities=23% Similarity=0.327 Sum_probs=83.7
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce--eccCcceeEEEEEecch
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDDV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~~v~di 233 (291)
||.|.|.|++++.+||.++|||++.......+ ...++.+..... ....+.+........ ...+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999876543222 234444432211 134454433222210 12345778999999999
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+++.+++ +++|+++..+|...++ ++.+|++||+|++|||+|
T Consensus 79 ~~~~~~l----~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEEL----KARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHH----HhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 9999999 9999999888844433 589999999999999975
No 68
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.66 E-value=1.6e-15 Score=113.10 Aligned_cols=116 Identities=23% Similarity=0.266 Sum_probs=79.5
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecc-
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD- 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d- 232 (291)
+.||.|.|+|++++.+||+++|||++.... + .... +..+ +..+.+....+........+..|++|.+++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~-~~~~--~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E-KTAY--FTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C-ccce--EeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 579999999999999999999999975421 1 1222 2221 234444332211111123467899999975
Q ss_pred -hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhh
Q 022871 233 -VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
++++++++ +++|+++..+|....+ +++.+||+||+||+|||.+....
T Consensus 71 dld~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~~ 118 (131)
T cd08363 71 EFDAFYTRL----KEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTLA 118 (131)
T ss_pred HHHHHHHHH----HHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcHH
Confidence 66666666 9999998765544433 35889999999999999986653
No 69
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=3.8e-15 Score=109.68 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=82.1
Q ss_pred EEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCccee----ccCcceeEEEEEecc
Q 022871 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEY----TKGNAYAQVAISTDD 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~----~~~~~~~h~~~~v~d 232 (291)
-.|.|.|++++.+||+++||+++.......++......+..+ ...+.+......... ...++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999987654333332222223322 123333322211111 133467899999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
++++++++ +++|++++.+|...++ |.+.++++||+||+|+|.+
T Consensus 79 ~d~~~~~l----~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERA----RAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHH----HHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 99999999 9999999999888776 3588999999999999975
No 70
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.66 E-value=4.9e-15 Score=112.20 Aligned_cols=114 Identities=20% Similarity=0.407 Sum_probs=83.7
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+++|+.|.|+|++++.+||+++|||++..... . ...++..+.... .+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 389999999999999999999999999865432 1 235565543322 2333221 1247889999999
Q ss_pred CHHHHH---HHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 102 DVYKLV---ENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~---~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
|++++. ++|+++|+++...+.....+...++||+||+|+.+||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877765 899999999876654433344446889999999999998764
No 71
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=6e-15 Score=113.27 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=81.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCc-ccCCCCeeEEEEEeC
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATE 101 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~~~v~ 101 (291)
+++||+|.|+|++++.+||+++|||++..+.. + ...++..+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 57999999999999999999999999876643 1 123333221 1233444443322111 122347899999998
Q ss_pred C---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 102 D---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
| +++++++|+++|+.+.. +.... ....+||+||+|+.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~~--~~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDRF--YFKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-ccccc--cEEEEEEECCCCcEEEEEECC
Confidence 8 89999999999997543 22222 334589999999999999875
No 72
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=4.3e-15 Score=109.83 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=80.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCC-ceeeEEEecCCCCceeEEEeeccCCCC--cccCCCCeeEEEEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-KYSNAFLGFGPEQSHFVVELTYNYGVT--SYDIGTGFGHFAIA 99 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~i~~~ 99 (291)
+|+|++|.|+|++++++||+++|||++..+....++ ....+++..........+.+....... ......++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998877543222 112333332211112234443222111 11233468899999
Q ss_pred eC---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 100 TE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 100 v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
|+ ++++++++++++|+++...+.. ++. ..++|+||+|++|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH--FGE-RSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee--cce-EEEEEECCCCCEEEeC
Confidence 98 5799999999999987654332 333 3588999999999984
No 73
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.66 E-value=8.4e-15 Score=107.69 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=85.1
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC--CcccCCCCeeEEEEEeCCHH
Q 022871 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--TSYDIGTGFGHFAIATEDVY 104 (291)
Q Consensus 27 v~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~i~~~v~d~~ 104 (291)
+.|.|+|++++.+||+++|||++......+.+......+..++. . +.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~--~--~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDS--V--LMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCE--E--EEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 45899999999999999999999877654444444455555432 2 223221111 11123346779999999999
Q ss_pred HHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 105 KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 105 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++++.+.|+++..++...++|.+ .++++||+|+.|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWGDR-YGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCcccccccce-EEEEECCCCCEEEEecC
Confidence 9999999999999888877777665 48999999999999863
No 74
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.66 E-value=3.3e-15 Score=112.67 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=83.1
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++.... . ...++..+ +..+.+...........+.++.|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R--KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeec----C--eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 46899999999999999999999999976431 1 12223321 23444432211111112346789999997
Q ss_pred --chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 232 --DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|++++++++ +++|+++...|...++ +++.+|++||+||+|||++...
T Consensus 73 ~~dv~~~~~~l----~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 73 EEDFDHWYQRL----KENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred HHHHHHHHHHH----HHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCCH
Confidence 788888887 9999998777766655 3589999999999999997554
No 75
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=8.4e-15 Score=108.23 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=79.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeec---c---CC--CCcccCCCCeeE
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTY---N---YG--VTSYDIGTGFGH 95 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~--~~~~~~~~g~~~ 95 (291)
+.|+.|.|+|++++.+||+++|||++..... .+.+ ..+..+ ...+.+.... . .. .......++..+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 4699999999999999999999999865422 1111 112211 1111111100 0 00 011112223468
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 96 FAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++|.|+|++++++++.++|+++..++...++|.. .++++||+|+.+++++.
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQT-VAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcE-EEEEECCCCCEEEEecC
Confidence 9999999999999999999999888877777765 48899999999999863
No 76
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.65 E-value=2.7e-15 Score=113.61 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=82.0
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|.|++++.+||+++|||++..... + ...++..+.. ...+.+.. ...+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~--~~~~~l~~-------~~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD--HHSIAIAR-------GPHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC--cceEEEcc-------CCCCceEEEEEECC
Confidence 468999999999999999999999999764321 1 1233443222 33444432 11357889999999
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|++++.+ +.++|+++|+++...|........+++||+||+|++|||++...
T Consensus 69 d~~~l~~-~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMR-GIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHH-HHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 9777652 22334999999887765543333577899999999999998654
No 77
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=1.2e-14 Score=107.41 Aligned_cols=117 Identities=26% Similarity=0.401 Sum_probs=83.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC-CcccCCCCeeEEEEEe
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TSYDIGTGFGHFAIAT 100 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~v 100 (291)
++|+|+.|.|+|++++.+||+++|||++..... ..+++..++ ....+.+...... .......++.|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 479999999999999999999999999986632 135555433 2233344332221 1223345789999999
Q ss_pred C---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
. ++++++++|.++|+.+... ...+. ...+|++||+|+++||....+
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccccc--eeEEEEECCCCCEEEEEEecC
Confidence 7 4889999999999987543 22222 235889999999999987654
No 78
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.65 E-value=8.6e-15 Score=108.00 Aligned_cols=112 Identities=19% Similarity=0.316 Sum_probs=80.4
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
..+++|+.|.|+|++++.+||+++|||++..... . ..++..++ . ..+.+.... ...+..|++|.+
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~--~~l~~~~~~------~~~~~~h~a~~v 66 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--FAVVKLDN-G--VSLDFAQPD------GEIPPQHYAFLV 66 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--EEEEEcCC-C--cEEEEecCC------CCCCcceEEEEe
Confidence 4688999999999999999999999999865321 1 22333322 2 223333211 112467899888
Q ss_pred C--CHHHHHHHHHHcCCeEecCCccc-------CCCceEEEEEECCCCCEEEEEeCC
Q 022871 101 E--DVYKLVENIRAKGGNVTREPGPL-------KGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~--d~~~~~~~l~~~G~~~~~~~~~~-------~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+ |+++++++|.++|+++...|... .+|.+ .++|+||+|+.|||++.+
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGR-GVYFLDPDGHLLEIITRP 122 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCee-EEEEECCCCCEEEEEecc
Confidence 6 69999999999999987665443 23444 599999999999999863
No 79
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=2.7e-15 Score=108.56 Aligned_cols=113 Identities=26% Similarity=0.322 Sum_probs=79.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCC-cccCCCCeeEEEEEeCC
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVT-SYDIGTGFGHFAIATED 102 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~i~~~v~d 102 (291)
|+|++|.|+|++++.+||+++|||++..+...+. ...++..++. .. +.+....... ....+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~~-~~--i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGDG-PQ--LHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCCC-cE--EEEEecCCCccccCCCcccceEEEEeCC
Confidence 5899999999999999999999999875533221 2345554432 12 2232221111 11234467899999999
Q ss_pred HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEE
Q 022871 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+++++++++++|+++...+.. ..+.. .+++.||+|+++||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GDGVR-QLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CCCcc-EEEEECCCCCEEeC
Confidence 999999999999998876544 33334 48899999999985
No 80
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.65 E-value=4.7e-15 Score=115.08 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=81.7
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|++|.|+|++++.+||+++|||++........+.....++..... ...+.+... .. ...+++.|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~--~~--~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRD--PA--GARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecC--CC--CCCCCceEEEEECC
Confidence 4689999999999999999999999997655432222222233332221 223433221 11 12246789999998
Q ss_pred chh---hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 232 DVY---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|.+ ++++++ ++.|+++...|..+.....+++|++||+|++|||++.
T Consensus 79 ~~~~l~~~~~~l----~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIF----LENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHH----HHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 744 444555 9999998777766554334569999999999999987
No 81
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.65 E-value=6.9e-15 Score=110.85 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=82.6
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCH-
Q 022871 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV- 103 (291)
Q Consensus 25 ~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~- 103 (291)
.||.|.|+|++++.+||+++|||++..+... ...|+.......+..+.+.. ....+++|++|.|+|+
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4999999999999999999999998766421 24555533222222222211 1234899999999765
Q ss_pred --HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Q 022871 104 --YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 104 --~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
++++++|.++|+++...|...+.+...++||+||+|+.||+......
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~ 117 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEE 117 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcce
Confidence 56799999999998776665554444568999999999999887643
No 82
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.65 E-value=3.9e-15 Score=111.11 Aligned_cols=117 Identities=25% Similarity=0.288 Sum_probs=83.7
Q ss_pred eeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchh
Q 022871 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.||.|.|+|++++++||+++||+++......+ +.....++..+. ....+.+.... ..++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 48999999999999999999999976543322 222334444322 23345544311 1457899999999865
Q ss_pred ---hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhh
Q 022871 235 ---KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 235 ---~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
+.++++ +++|+++...|...+.++.+++||+||+|++|||++...-
T Consensus 72 ~~~~~~~~l----~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 72 DILRAADRL----AANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred HHHHHHHHH----HHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 445555 9999999888776665446889999999999999986653
No 83
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.65 E-value=8e-15 Score=107.44 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=79.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC--C---cccCCCCeeEEEEE
Q 022871 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV--T---SYDIGTGFGHFAIA 99 (291)
Q Consensus 25 ~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~g~~~i~~~ 99 (291)
.+..|.|+|++++.+||+++|||++..... ...++..++. .+.+.+...... . ....+.+ .|++|.
T Consensus 3 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 73 (119)
T cd08359 3 LYPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFE 73 (119)
T ss_pred ceeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEE
Confidence 367899999999999999999999876521 1233433322 233333221111 1 1112334 489999
Q ss_pred eCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|+|+++++++|.++|+++..++...++|.+. ++++||+|++|+|++
T Consensus 74 v~did~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~G~~ie~~~ 119 (119)
T cd08359 74 VDDVDAEYERLKAEGLPIVLPLRDEPWGQRH-FIVRDPNGVLIDIVQ 119 (119)
T ss_pred ECCHHHHHHHHHhcCCCeeeccccCCCcceE-EEEECCCCCEEEEEC
Confidence 9999999999999999988777777776554 889999999999985
No 84
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=3.5e-15 Score=110.63 Aligned_cols=118 Identities=24% Similarity=0.361 Sum_probs=85.1
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccC-CcceeEEEecccCCCceeEEEeeeecCcce------eccCcceeEE
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKP-EYKYTLAMLGYAEEDQTTVLELTYNYGVTE------YTKGNAYAQV 226 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~------~~~~~~~~h~ 226 (291)
+.||.|.|.|++++.+||+++|||++....... +......++..+ ...+++..+..... ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999987654432 223344555432 45566665433211 1245688999
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCC---CCeEEEEe
Q 022871 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPD---GWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~---G~~iel~~ 280 (291)
+|.|+|++++++++ .++|+++..+|.....+ ++.+++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l----~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARL----KAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHH----HHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 99999999999999 99999998887644443 3555555555 99999985
No 85
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.65 E-value=7.9e-15 Score=107.71 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=80.8
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
+++.||+|.|+|++++.+||+++|||++..+.. . ..+++..++. .+.+.+... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~-------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D---GALYLRMDDR--AWRIAVHPG-------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC--C---CeEEEEccCC--ceEEEEEeC-------CCCceeEEEEEEC
Confidence 468999999999999999999999999865421 1 1345554332 333433321 1236789999996
Q ss_pred ---CHHHHHHHHHHcCCeEecCCccc--CCCceEEEEEECCCCCEEEEEeCC
Q 022871 102 ---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
|+++++++|+++|+++...+... ..+...+++|+|||||.|||....
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58899999999999987654321 222334689999999999998764
No 86
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.65 E-value=7.2e-16 Score=114.16 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=78.7
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeecc--CCcceeEEEecccCCCceeEEEeeeecCcceecc---CcceeEEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDK--PEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK---GNAYAQVA 227 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~~~~~h~~ 227 (291)
+++||+|.|.|++++.+||+++|||++...... .........+..+. ....+......+...... .....|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 478999999999999999999999998876651 22223334444222 233333322222111111 01345677
Q ss_pred EEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022871 228 ISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 228 ~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
+.+.+ ++++.++| ++.|+++..+|.+..+.....+|++||+|++|||
T Consensus 79 ~~~~~~~dl~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERL----KAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHH----HHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHH----hhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 76665 45555555 9999999999888777555557899999999997
No 87
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.65 E-value=1e-14 Score=106.50 Aligned_cols=111 Identities=26% Similarity=0.428 Sum_probs=83.6
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
++++|+.|.|+|++++.+||+++|||++..+.+ ..+++..+. .....+.+... ...++.|++|.|.
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 478999999999999999999999999887642 135555542 22233333222 1247889999997
Q ss_pred ---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++++++++++|+++...+...+++.. .+++.||+|+++|+...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPGVGR-GLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCCCce-EEEEECCCCCEEEEEEc
Confidence 6889999999999998877654454444 48999999999999865
No 88
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=4.3e-15 Score=109.83 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=79.7
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeec--------C--cceeccCcce
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY--------G--VTEYTKGNAY 223 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~--------~--~~~~~~~~~~ 223 (291)
+.|+.|.|+|++++.+||+++|||....... +..+.. +..+ ...+.+.... . +......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999998754221 111221 1111 1111111100 0 0001122345
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.|++|.|+|++++++++ +++|+++..+|...++ +.+.++++||+|+.|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARA----VEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHH----HHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 79999999999999999 9999999888888777 45889999999999999874
No 89
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.64 E-value=3.1e-15 Score=110.91 Aligned_cols=119 Identities=29% Similarity=0.506 Sum_probs=83.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecC-CCceeeEEEecCCCCceeEEEeeccCCC-Cc-----ccCCCCeeEE
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVP-EEKYSNAFLGFGPEQSHFVVELTYNYGV-TS-----YDIGTGFGHF 96 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~g~~~i 96 (291)
|+||+|.|+|++++.+||+++|||+........ .+....+++..++ ..+.+..+... .+ ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGN----VQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCC----EEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997765432 2334456665432 23333322211 11 1346789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCC--CCEEEEEe
Q 022871 97 AIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPD--GYIFELIQ 146 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~--G~~iel~~ 146 (291)
+|.|+|+++++++++++|+++..++.....+...+.++.+|+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999998887653444444434444444 99999975
No 90
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.64 E-value=4.9e-15 Score=108.96 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
..++.|+.|.|+|++++.+||+++||+++..... . ..++...+......+.+.. ...++..|++|.+
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v 70 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRA 70 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEc
Confidence 3578999999999999999999999999775421 1 1223221211233444432 1235789999999
Q ss_pred cc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
++ +++..+++ +++|+++...+.. ++ .++.+||+||+||+|||+..
T Consensus 71 ~~~~~v~~~~~~l----~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 71 SSPEALERRVAAL----EASGLGIGWIEGD-PG-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred CCHHHHHHHHHHH----HHcCCccccccCC-CC-CcceEEEECCCCCEEEEEEe
Confidence 86 44455555 9999987443322 22 24789999999999999864
No 91
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.64 E-value=1.5e-14 Score=105.06 Aligned_cols=111 Identities=22% Similarity=0.314 Sum_probs=80.2
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
|++++|+.|.|+|++++.+||++ |||+...+.. + ..++..++.. ...+..... ...++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~---~---~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD---D---ELYYRGYGTD-PFVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC---C---eEEEecCCCc-cEEEEcccC-------CcCcccEEEEEE
Confidence 57899999999999999999999 9999865532 1 2445432222 222222111 124788999999
Q ss_pred CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+|.+++.+.++++|......+. .+++.. .++|+||+|+.+||+...
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-~~~~~DPdG~~iEl~~~~ 111 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGGGK-RVTLTDPDGFPVELVYGQ 111 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCCce-EEEEECCCCCEEEEEecc
Confidence 9999999999999998765432 344444 589999999999998763
No 92
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=1.8e-14 Score=106.94 Aligned_cols=116 Identities=22% Similarity=0.338 Sum_probs=81.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhc---CCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCc--c-cCCCCeeEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECF---GMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS--Y-DIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~L---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~g~~~i 96 (291)
+|+||.|.|+|++++.+||+++| ||++..+.. .. ..|... ... ..+.+.......+ . ..+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~~---~~~~~~-~~~--~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--DG---RSWRAG-DGG--TYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--cC---ceEEec-CCc--eEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999877642 11 123322 122 2334433322111 1 234578999
Q ss_pred EEEeC---CHHHHHHHHHHcCCeEecCCccc--CCCceEEEEEECCCCCEEEEEe
Q 022871 97 AIATE---DVYKLVENIRAKGGNVTREPGPL--KGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~--~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|.|+ |+++++++|+++|+.+...+... ..+....+|++||+|+++||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 99997 48899999999999988766542 2223345899999999999975
No 93
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=4e-15 Score=114.27 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=80.9
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce-eccCcceeEEEEEec
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTD 231 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~ 231 (291)
.+.||+|.|+|++++.+||+++|||++..... . .+.+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 36899999999999999999999999875432 1 222222111 1245666655322111 122357889999999
Q ss_pred c---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 232 D---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
| ++++++++ +++|+++. .+....+ .+.+||+||+|+.|||++..
T Consensus 75 d~~dvd~~~~~L----~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERL----EALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHH----HHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 66666666 99999754 3333333 47899999999999999865
No 94
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=5e-15 Score=109.22 Aligned_cols=117 Identities=21% Similarity=0.311 Sum_probs=82.0
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc---ceeccCcceeEEEE
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV---TEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~h~~~ 228 (291)
.++.|+.|.|.|++++.+||+++|||+....... ..+..+... ...+++...... .....+++..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~--~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE--VGRKALRFG------SQKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeeccccc--CCceEEEeC------CEEEEEecCCCccCcCccCCCCCCceEEE
Confidence 4689999999999999999999999997654321 122222222 134444332211 11123457889999
Q ss_pred Eecc-hhhhHHHHHHHHHHhCCeeecCCcccCC--CCceEEEEECCCCCeEEEEe
Q 022871 229 STDD-VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~d-i~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~Dp~G~~iel~~ 280 (291)
.+++ ++++.+++ +++|+++...|...++ +.++.+|++||+|++||+++
T Consensus 74 ~~~~~~~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHL----EAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHH----HHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9975 88888888 9999998877765432 23578999999999999986
No 95
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.63 E-value=1.5e-14 Score=106.05 Aligned_cols=113 Identities=25% Similarity=0.365 Sum_probs=81.8
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+.+|+|+.|.|+|++++.+||+++|||++..... ...++..++. ....+.+... ..++..|++|.+
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999875532 1344443322 2223333211 123678999999
Q ss_pred ---CCHHHHHHHHHHcCCeEecCCcc--cCCCceEEEEEECCCCCEEEEEeCC
Q 022871 101 ---EDVYKLVENIRAKGGNVTREPGP--LKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~--~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+++++++++|+++|+++...+.. .+++.+ .++|.||+|+.++|+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGY-GFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCce-EEEEECCCCCEEEEEecc
Confidence 57899999999999998766532 233433 488999999999998764
No 96
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.63 E-value=4.5e-15 Score=109.13 Aligned_cols=114 Identities=25% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++..... .. .++..........+.+.. ...++..|++|.|.
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 468999999999999999999999999765321 12 222211111233444422 11247889999995
Q ss_pred ---chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 232 ---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
|++++.+++ +++|+++...|.....+.++.+|+.||+|++|||+...
T Consensus 70 ~~~dv~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFF----QELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHH----HHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 566666666 99999987765443333357899999999999998654
No 97
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.63 E-value=9.8e-15 Score=108.90 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCc--ceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEE
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEY--KYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIS 229 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~ 229 (291)
..+.|++|.|+|++++.+||+++||+++......... ....++.. + ...+.+..... ...++..|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~l~~~~~----~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLI-G----GLWIAIMEGDS----LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEc-C----CeEEEEecCCC----CCCCCceEEEEE
Confidence 3689999999999999999999999986543221110 00011111 1 23455543211 122468899999
Q ss_pred ec--chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 230 TD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 230 v~--di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|+ +++++.++| +++|+++..+... ..+.++.+||+||+||.|||.....
T Consensus 74 v~~~~ld~~~~~l----~~~gv~~~~~~~~-~~~~g~~~yf~DPdG~~iEl~~~~~ 124 (131)
T cd08364 74 ISDSDVDEYTERI----KALGVEMKPPRPR-VQGEGRSIYFYDFDNHLFELHTGTL 124 (131)
T ss_pred cCHHHHHHHHHHH----HHCCCEEecCCcc-ccCCceEEEEECCCCCEEEEecCCH
Confidence 97 466666666 9999987543322 2323689999999999999997554
No 98
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.63 E-value=1e-14 Score=107.17 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=83.1
Q ss_pred EEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcc--eeccCcceeEEEEEecchh
Q 022871 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--EYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~h~~~~v~di~ 234 (291)
..|.|.|++++.+||+++||+.+.......++......+..+ ...+.+....+.. ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 458899999999999999999987655433333333333322 2345554322210 0012346789999999999
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
++++++ .+.|+++..+|...++ +.+.++++||+|++|+|++
T Consensus 81 ~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARA----VAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHH----HHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 999999 9999999888876666 4689999999999999987
No 99
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.63 E-value=7.1e-15 Score=105.81 Aligned_cols=120 Identities=27% Similarity=0.343 Sum_probs=91.5
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
...+.|..|.+.|++++++||.++|||+........+..|..+.... ....+. +.- .. ....++..+.+.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~-~~~gG~-l~~--~~---~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG-AGAGGG-LMA--RP---GSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC-ccccce-ecc--CC---cCCCCCCCEEEEEec
Confidence 46788999999999999999999999998766555455555554432 122222 211 11 112225678999999
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+|++++++++ +++|++++.++...|+ +++.+.+.||.||+|.|.+..
T Consensus 80 ~did~~l~rv----~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERV----VAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHH----HhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999 9999999999999886 369999999999999998753
No 100
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=8.8e-15 Score=108.13 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=78.9
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCC--cceeEEEecccCCCceeEEEeeeecCcce--eccCcceeEEEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~ 228 (291)
.+.|+.|.|.|++++.+||+++|||++.......+ ..+.+.+.. .....+..+++........ .....+..|++|
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f 79 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGD-GLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAF 79 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEec-CCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEE
Confidence 36899999999999999999999999775543222 122232222 1111234566654322211 112346789999
Q ss_pred Eecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 229 STDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
.|+| ++++++++ +++|+++..++.. + +.+.+|++||+|++|||+
T Consensus 80 ~v~~~~~~~~~~~~~----~~~g~~~~~~~~~--~-~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 80 SVPSEASLDAWRERL----RAAGVPVSGVVDH--F-GERSIYFEDPDGLRLELT 126 (126)
T ss_pred EcCCHHHHHHHHHHH----HHcCCcccceEee--c-ceEEEEEECCCCCEEEeC
Confidence 9985 45566666 9999998654433 2 358899999999999985
No 101
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=8.8e-15 Score=107.94 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=79.5
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||++.... +.+..+.+. . +..+.+... . ...+..|++|.++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~--~----~~~~~~h~a~~v~ 67 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP--D----GEIPPQHYAFLVS 67 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC--C----CCCCcceEEEEeC
Confidence 46789999999999999999999999876421 112222222 1 244554432 1 1234579999886
Q ss_pred --chhhhHHHHHHHHHHhCCeeecCCccc------CCCCceEEEEECCCCCeEEEEec
Q 022871 232 --DVYKSAEVVNLVTQELGGKITRQPGSI------PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 --di~~~~~~l~~~~~~~G~~~~~~p~~~------~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|+++.++++ ++.|+++...|... ...+++.+||+||+||.|||+++
T Consensus 68 ~~dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 68 EEEFDRIFARI----RERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHHHHHHHHH----HHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 577787777 99999987776543 12346999999999999999986
No 102
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.62 E-value=8.3e-15 Score=107.59 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=77.4
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecc
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d 232 (291)
++.||.|.|+|++++.+||+++|||++..... .. . .++..++ .+..+.+... ..++..|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~-~-~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DG-A-LYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---CC-e-EEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 58899999999999999999999998754321 11 2 2233222 2444555321 12467899999975
Q ss_pred ---hhhhHHHHHHHHHHhCCeeecCCccc--CCCCceEEEEECCCCCeEEEEec
Q 022871 233 ---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 233 ---i~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+++.+++| +++|+++...|... ..++++.+|++|||||.|||+..
T Consensus 68 ~~dl~~~~~~l----~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARL----RAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHH----HHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 66666666 99999987655321 22234789999999999999864
No 103
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.62 E-value=5.1e-15 Score=107.11 Aligned_cols=113 Identities=22% Similarity=0.135 Sum_probs=79.5
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce-eccCcceeEEEEEecc
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD 232 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~d 232 (291)
++|++|.|.|++++.+||+++|||.+........ ...+ +..++. ..+.+........ ...+++..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~~~--~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-PGAW--LYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-CceE--EEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 5799999999999999999999998765432221 1122 222221 2444443322211 1234567899999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022871 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
++++++++ .++|+++..++... . +.+.+|+.||+|++|||
T Consensus 75 ~~~~~~~l----~~~g~~~~~~~~~~-~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARL----KAAGVPYTESDVPG-D-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHH----HHcCCCcccccCCC-C-CccEEEEECCCCCEEeC
Confidence 99999999 99999988877552 2 35789999999999996
No 104
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.62 E-value=6.8e-15 Score=108.69 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=78.2
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.||.|.|+|++++.+||+++|||++.... + . ..++..+. .+..+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~---~-~--~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERT---A-K--ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCC---C-C--eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 46899999999999999999999999976432 1 1 22344322 2344444321 135679999998
Q ss_pred c---hhhhHHHHHHHHHHhCCeeecCCcccC--CCCceEEEEECCCCCeEEEEechh
Q 022871 232 D---VYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
| ++++.+++ +++|+++...+.... ..+.+++||+|||||.|||+.+..
T Consensus 69 ~~~dv~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 69 DDDALESAATEL----EQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 6 66666666 999999876654221 223477899999999999987643
No 105
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=1.7e-14 Score=107.13 Aligned_cols=116 Identities=25% Similarity=0.282 Sum_probs=82.1
Q ss_pred CceeEEeeeCCccccHHHHHhhh---CCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce---eccCcceeEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE---YTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~~~~~h~ 226 (291)
++.||.|.|.|++++.+||+++| ||++..... + ...+... ..+..+.+........ ...+++..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 999776431 1 1122221 1245566654433221 1234578899
Q ss_pred EEEecc---hhhhHHHHHHHHHHhCCeeecCCccc--CCCCceEEEEECCCCCeEEEEe
Q 022871 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGSI--PGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~--~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+|.|+| ++++.+++ +++|+++...+... ...+.+.+|++||+|++|||+.
T Consensus 73 a~~v~~~~d~~~~~~~l----~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARL----AKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHH----HHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 999975 66777777 99999988877642 2224588999999999999985
No 106
>PRK06724 hypothetical protein; Provisional
Probab=99.62 E-value=9e-15 Score=108.26 Aligned_cols=110 Identities=18% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCceeEEeeeCCccccHHHHHhhh---CCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEE
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKAL---GMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAI 228 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~l---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~ 228 (291)
..++||.|.|+|+++|.+||+++| |++.........+ ...+.+.. .+.. .....+..|+||
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~-~~~~-~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKE-VDEE-IVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEec-CCcc-ccCCCCceeEEE
Confidence 469999999999999999999977 5554311110011 11222211 1100 012346789999
Q ss_pred Ee---cchhhhHHHHHHHHHHhCCeeecCCcccC--CCCceEEEEECCCCCeEEEEec
Q 022871 229 ST---DDVYKSAEVVNLVTQELGGKITRQPGSIP--GLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 229 ~v---~di~~~~~~l~~~~~~~G~~~~~~p~~~~--~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.| ++++++.+++ +++|+++..+|...+ ..+.+.+||+||||+.|||+..
T Consensus 70 ~v~~~~dvd~~~~~l----~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 70 QAINRKVVDEVAEFL----SSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred ecCChHHHHHHHHHH----HHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 98 5677777777 999999988886544 2334778999999999999865
No 107
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.62 E-value=2.7e-14 Score=121.98 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=84.7
Q ss_pred CCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCce-eeEEEecCCCCceeEEEeeccCCCCcccCCCC-ee
Q 022871 17 PKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY-SNAFLGFGPEQSHFVVELTYNYGVTSYDIGTG-FG 94 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~ 94 (291)
..+.+++|+||+|.|+|++++.+||+++|||++..+...+++.. ...++..+.. .+ .+.+... .+.| ++
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-------~~~g~~~ 209 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-AH-DIAFVGD-------PEPGKLH 209 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-Cc-ccceecC-------CCCCceE
Confidence 33458999999999999999999999999999876644333322 2344443221 11 1111110 1234 89
Q ss_pred EEEEEeCC---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 95 HFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 95 ~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|+||.|+| +++++++|+++|+++...|...+.+...++||+||+|+++|+...
T Consensus 210 Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 210 HVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEecC
Confidence 99999986 555788999999998776654443333469999999999999843
No 108
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.61 E-value=6.5e-14 Score=104.87 Aligned_cols=119 Identities=25% Similarity=0.431 Sum_probs=81.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCC
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED 102 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d 102 (291)
+|+|+.|.|+|++++.+||+++|||++...... . ...++..+. .....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765432 1 234554431 11223333322221111233478899999987
Q ss_pred HH---HHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 103 VY---KLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 103 ~~---~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
++ +++++|.++|+++...+. . ++. ..++++||+|+++||+...+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~-~~~-~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H-GNA-WSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C-Cce-eEEEEECCCCCEEEEEEcCC
Confidence 65 578999999998765432 2 223 35889999999999998764
No 109
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.61 E-value=1.5e-14 Score=105.91 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=79.3
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcc----eeccCcceeEEEEEec
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----EYTKGNAYAQVAISTD 231 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~h~~~~v~ 231 (291)
+..|.|.|++++.+||+++|||++.... ..+. .+..++. ...+.+....... .....+...|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~~--~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWYV--SLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcEE--EEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 5789999999999999999999976431 1122 2222111 2344443211110 0111223459999999
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
|++++.+++ .++|+++..+|...++ +.+.++++||+|++|||+|
T Consensus 76 did~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERL----KAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHH----HhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 999999999 9999998888887776 4689999999999999986
No 110
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.60 E-value=2.8e-14 Score=106.86 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=80.9
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecc
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD 232 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d 232 (291)
++.|+.|.|+|++++.+||+++|||++...... . .+.++..+. .....+.+............++..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999997654321 1 223333221 12345555443222111233578899999998
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhh
Q 022871 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
+++.. .+++++.++|+++...+. .+ +++.+|++||+||+|||+...+.
T Consensus 76 ~~~v~-~~~~~l~~~G~~~~~~~~-~~--~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLR-DLYERLRAAGITPVWPVD-HG--NAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHH-HHHHHHHHCCCCccccCC-CC--ceeEEEEECCCCCEEEEEEcCCC
Confidence 55422 223444999998776543 22 24889999999999999976553
No 111
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.60 E-value=2.5e-14 Score=102.85 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=75.3
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHHHH
Q 022871 29 YRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLVE 108 (291)
Q Consensus 29 l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~~ 108 (291)
|.|+|++++++||+++|||++....+. ...+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPD------YVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETS------EEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCC------eEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 689999999999999999999884331 233333211000011111111 112234578899999999999999
Q ss_pred HHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 109 NIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 109 ~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
+++++|+++..+|...++|.. .+++.||+|++|+|+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWGQR-SFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTSEE-EEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCCeE-EEEEECCCCCEEEeC
Confidence 999999998888888777654 499999999999986
No 112
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.60 E-value=8.2e-14 Score=114.96 Aligned_cols=225 Identities=18% Similarity=0.244 Sum_probs=141.5
Q ss_pred CCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcc--cCCCCeeE
Q 022871 18 KKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGH 95 (291)
Q Consensus 18 ~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~ 95 (291)
++...++.+|.+.|+|.+.+..=|-..|||+...+-... ....++.| +..+++.-.+.+....+ ..|++++.
T Consensus 17 P~~~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk----~v~l~rQG--dinlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 17 PEGTDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK----AVTLYRQG--DINLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCCCCceeEEEEecCCHHHHHHHHHHHhCcccccccccc----ceeEEEeC--CEEEEEcCCCcchhhHHHHhcCCchhe
Confidence 345899999999999995444444455999987542211 12223323 44454443333323333 37889999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEecCCc-----ccC----CCceEEEEEECCCC-C-E--EEEEeC---CC-C---CCCce
Q 022871 96 FAIATEDVYKLVENIRAKGGNVTREPG-----PLK----GGTTHIAFVKDPDG-Y-I--FELIQR---GP-T---PEPLC 155 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~~~~~-----~~~----~g~~~~~~~~dp~G-~-~--iel~~~---~~-~---~~~~~ 155 (291)
++|.|+|...++++..+.|++....+. ..+ -|.. .+||.|..| . + .++... .. . ...++
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggs-llyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~ID 169 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGS-LLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAID 169 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCc-EEEEeccCCCCcccccccccccccccccccCceeec
Confidence 999999999999999999996433221 111 1222 477777763 1 1 111111 01 1 23689
Q ss_pred eEEeee--CCccccHHHHHhhhCCeeeeeeccCCcceeEEEec-ccCCCceeEEEeeeecCcce---------eccCcce
Q 022871 156 QVMLRV--GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLG-YAEEDQTTVLELTYNYGVTE---------YTKGNAY 223 (291)
Q Consensus 156 hv~l~v--~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~---------~~~~~~~ 223 (291)
|++.+| ..++....||+++|||+.....+.++.. +.+..+ ..+.++. +.|.-+.+... ...|.|+
T Consensus 170 Hl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~-tgl~Sram~Sp~G~--vrlplN~s~~~~sqi~efl~~y~G~GI 246 (363)
T COG3185 170 HLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPI-TGLRSRAMVSPCGK--VRLPLNESADDKSQIGEFLREYRGEGI 246 (363)
T ss_pred hhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCc-ccEEEeeEecCCCc--EEeecccCCCchhHHHHHHHHhCCCcc
Confidence 999888 5799999999999999987665544321 111111 0111122 33333322221 2366799
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeeecCCc
Q 022871 224 AQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
+||+|.++||-++++++ +++|+++...|.
T Consensus 247 QHIA~~T~dI~~tv~~l----r~rG~~fl~ip~ 275 (363)
T COG3185 247 QHIAFGTDDIYATVAAL----RERGVKFLPIPE 275 (363)
T ss_pred eEEEecccHHHHHHHHH----HHcCCccCCCch
Confidence 99999999999999999 999999988773
No 113
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.60 E-value=2.5e-14 Score=104.33 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=80.7
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
+++.|+.|.|+|++++.+||+++|||++..... ... ++..+. ..+..+.+... ...+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~--~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSV--YLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeE--EEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 468999999999999999999999999775431 122 233221 12334444321 1246789999998
Q ss_pred c---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 232 D---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+ +++..+++ +++|+++...|...++ +++.+|+.||+|++||++...
T Consensus 67 ~~~~v~~~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHL----EAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHH----HHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEcc
Confidence 4 56666666 9999999888765555 358899999999999998653
No 114
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=3.4e-14 Score=105.00 Aligned_cols=117 Identities=22% Similarity=0.313 Sum_probs=80.5
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc-ceeccCcceeEEEEEe
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVAIST 230 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~~~v 230 (291)
+++.|+.|.|+|++++.+||+++|||++.... + ....+..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 36899999999999999999999999987542 1 123333222 2345555443221 1112335788999999
Q ss_pred cc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
.+ ++++++++ +++|+++.. +...++ .+.+|+.||+||+|||....+
T Consensus 73 ~~~~~v~~~~~~l----~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 73 PSRADLAAALRRL----IELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CCHHHHHHHHHHH----HHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 85 55556666 999998744 333333 378999999999999987654
No 115
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.60 E-value=2.5e-14 Score=103.67 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=78.9
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhh
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
...|.|+|++++.+||+++|||++... .+ ....+...+ ..+..+.+..... .++...|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 346899999999999999999997532 11 122222211 1234444432211 12345799999999999
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+.+++ ++.|+++..+|...++ +.+.+|+.||+||+|+|+++
T Consensus 71 ~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARA----VAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHH----HhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 99999 9999999888877776 45889999999999999975
No 116
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.60 E-value=1.4e-14 Score=104.15 Aligned_cols=108 Identities=26% Similarity=0.330 Sum_probs=75.8
Q ss_pred eeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhhHH
Q 022871 159 LRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSAE 238 (291)
Q Consensus 159 l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~~ 238 (291)
|.|+|++++.+||+++|||++..... .+..+... .........+...... .....+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLG--FRFHDGVIEFLQFPDP--PGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEET--EEEEEEEEEEEEEESS--SSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEec--cchhhhhHHHccCCcc--ccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999876321 12233222 1000112222221111 1234578899999999999999
Q ss_pred HHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 239 VVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 239 ~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++ +++|++++.+|...++ +.+.+++.||+|++|||+
T Consensus 73 ~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RL----KELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HH----HHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HH----HHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99 9999999999888777 469999999999999986
No 117
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=3.7e-14 Score=102.83 Aligned_cols=109 Identities=23% Similarity=0.405 Sum_probs=75.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe--CCH
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT--EDV 103 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v--~d~ 103 (291)
|+.|.|+|++++.+||+++|||++..+.+. ..++..+. ..+.+....... ..+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~------~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSK------EAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCc------eeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 899999999999999999999998765421 23344332 122232221111 1234678999999 479
Q ss_pred HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+++++++.++|+++...+.....+. ..++++||+|+++|++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGEG-RSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCCc-eEEEEECCCCCEEEEEeC
Confidence 9999999999999765433222233 358999999999999864
No 118
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=2.9e-14 Score=104.85 Aligned_cols=109 Identities=28% Similarity=0.463 Sum_probs=78.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe--
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT-- 100 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v-- 100 (291)
+|+|+.|.|+|++++.+||+++|||++....+ + ..++..+. ..+.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 57899999999999999999999999866532 1 23444332 22222221111 1234678999998
Q ss_pred CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+|+++++++|+++|+++...+.. .+ ..++|+||+|+++||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~~--~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--EG--DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--Cc--cEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 12 2589999999999999764
No 119
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.59 E-value=3.3e-14 Score=102.83 Aligned_cols=109 Identities=25% Similarity=0.273 Sum_probs=78.7
Q ss_pred EeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhhH
Q 022871 158 MLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKSA 237 (291)
Q Consensus 158 ~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~~ 237 (291)
.|.|+|++++.+||+++|||++..... +. .+..+..+ ...+.+....+... ...++..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999765432 12 22333321 34455544332211 12346679999999999999
Q ss_pred HHHHHHHHHhCCe-eecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 238 EVVNLVTQELGGK-ITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 238 ~~l~~~~~~~G~~-~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+++ ++.|++ +..++...++ +.+.++++||+|+.|||+|
T Consensus 74 ~~l----~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AEL----KAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHH----HHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999 999998 5666666555 3588999999999999986
No 120
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.58 E-value=8.9e-14 Score=118.29 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=84.5
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
..+++|+|++|.|+|++++.+||+++|||++..+...+.+.....++..+. ..+ .+.+.. ..+++++|+||
T Consensus 132 ~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-------~~~~~~~Hiaf 202 (294)
T TIGR02295 132 VSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG-GVH-DIALTN-------GNGPRLHHIAY 202 (294)
T ss_pred ccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC-CcC-ceEeec-------CCCCceeeEEE
Confidence 458999999999999999999999999999876643333333334443222 111 122211 12358999999
Q ss_pred EeCC---HHHHHHHHHHcCCe--EecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 99 ATED---VYKLVENIRAKGGN--VTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~--~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+| +++++++|+++|++ +...|.....+...++|++||+|++||+....
T Consensus 203 ~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 203 WVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 9998 45568999999987 54444433333344689999999999998764
No 121
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.58 E-value=3e-14 Score=104.48 Aligned_cols=112 Identities=28% Similarity=0.380 Sum_probs=78.5
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||+++|||+...... .+.+ +...+ ...+.+.+.. ...++..|++|.|.
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVY--LRATG-SEHHILRLRR-------SDRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEE--EECCC-CccEEEEecc-------CCCCCCceEEEEeC
Confidence 368999999999999999999999999764321 2333 22112 1223333321 11246789999995
Q ss_pred ---chhhhHHHHHHHHHHhCCeeecCCcc--cCCCCceEEEEECCCCCeEEEEech
Q 022871 232 ---DVYKSAEVVNLVTQELGGKITRQPGS--IPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 ---di~~~~~~l~~~~~~~G~~~~~~p~~--~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++++.++++ +++|+++..+|.. .++ +++.++++||+||+|||+...
T Consensus 68 ~~~~l~~~~~~l----~~~G~~~~~~~~~~~~~~-~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQV----AARGGTVLSEPGATDDPG-GGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHH----HHcCCceecCCcccCCCC-CceEEEEECCCCCEEEEEecc
Confidence 566666666 9999998877643 333 468899999999999998754
No 122
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.58 E-value=4.1e-14 Score=102.72 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=76.5
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.++.|+.|.|+|++++.+||++ |||++.... +. .++ +...+. ....+.+.. ...+++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~---~~--~~~-~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAART---DD--ELY-YRGYGT-DPFVYVARK-------GEKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEec---CC--eEE-EecCCC-ccEEEEccc-------CCcCcccEEEEEEC
Confidence 4689999999999999999999 999876442 11 222 332111 122222111 11247789999999
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|.+++.+.+ ++.|.++...+. .++ +++.+||.||+||.|||+..
T Consensus 67 ~~~~~~~~~----~~~g~~~~~~~~-~~~-~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAA----ALPGASVIDDLE-APG-GGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHH----HcCCCeeecCCC-CCC-CceEEEEECCCCCEEEEEec
Confidence 998888888 888998765443 344 35899999999999999764
No 123
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=2.5e-14 Score=103.72 Aligned_cols=109 Identities=23% Similarity=0.352 Sum_probs=73.5
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec--ch
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD--DV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~--di 233 (291)
||.|.|+|++++.+||+++|||+...... . ...+.+. ...+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~~~~~------~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAYFELA------GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeEEEec------CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999764431 1 1122221 2344443222111 12346789999995 56
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+++++++ .++|+++...+...++ +++.+|++||+|++|||+..
T Consensus 69 ~~~~~~l----~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERL----KALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHH----HHcCCccCCCccccCC-CceEEEEECCCCCEEEEEeC
Confidence 6666666 9999997644333333 35899999999999999854
No 124
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.58 E-value=1.1e-13 Score=100.25 Aligned_cols=109 Identities=20% Similarity=0.260 Sum_probs=78.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHH
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
+..|.|+|++++.+||+++|||++.... + ...++..++ .....+.+..... .+....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHH
Confidence 4578999999999999999999986431 1 123333222 1123333332211 12245699999999999
Q ss_pred HHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++|+++|+++...+...++|.. .+++.||+|++|+|+++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPWGVR-RFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCCceE-EEEEECCCCCEEEEEEc
Confidence 999999999998887776666654 48899999999999975
No 125
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=9.6e-14 Score=102.31 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=77.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHh---cCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEe
Q 022871 24 FLHAVYRVGDLDRTIKFYTEC---FGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~---LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v 100 (291)
+.|+.|.|+|++++++||+++ ||++...+.. +. ...+..+..... +.+..+....+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~---~~--~~~~~~~~~~~~--~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG---PG--AVGYGKGGGGPD--FWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC---Cc--eeEeccCCCCce--EEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 6999875531 11 222332212222 333322211111 222457999999
Q ss_pred CC---HHHHHHHHHHcCCeEecCCcccCC--CceEEEEEECCCCCEEEEE
Q 022871 101 ED---VYKLVENIRAKGGNVTREPGPLKG--GTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~d---~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~~dp~G~~iel~ 145 (291)
+| ++++++++.++|+.+...|...++ .....+||+||+|+.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998877665543 2333488999999999986
No 126
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=1.1e-13 Score=101.81 Aligned_cols=113 Identities=28% Similarity=0.446 Sum_probs=78.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC------CcccCCCCeeEEE
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV------TSYDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~i~ 97 (291)
+.|+.|.|+|++++++||+++|||++..+. .+ ..+++..++. .. +.+...... .......++.|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR-GM--LLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC-cE--EEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 12 1355555443 22 222211110 0111234788999
Q ss_pred EEe--CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 98 IAT--EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v--~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|.+ +|++++++++.++|+++...+. ..++.. .++|+||+|+++|+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~~~-~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRGGR-SLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCCee-EEEEECCCCCEEEEec
Confidence 998 5899999999999998876544 233444 4899999999999986
No 127
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.56 E-value=7.2e-14 Score=102.74 Aligned_cols=110 Identities=29% Similarity=0.332 Sum_probs=75.7
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe--
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST-- 230 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v-- 230 (291)
.+.|+.|.|+|++++.+||+++|||++..... + ... +..+ ...+.+...... ...++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~~~--~~~~----~~~~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--GAY--LEAG----DLWLCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--ceE--EecC----CEEEEEecCCCC---CCCCCeeeEEEEeCH
Confidence 47899999999999999999999999754321 1 111 2221 122333221111 1235678999998
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+|++++++++ +++|+++..++.. + ++.+||.||||++|||+..+.
T Consensus 68 ~dl~~~~~~l----~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~~ 112 (121)
T cd07244 68 EDFASLKEKL----RQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGSL 112 (121)
T ss_pred HHHHHHHHHH----HHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCCH
Confidence 4567777777 9999997655432 2 378999999999999997654
No 128
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=6.2e-14 Score=101.88 Aligned_cols=108 Identities=26% Similarity=0.275 Sum_probs=75.5
Q ss_pred EEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce-eccCcceeEEEEEecc---
Q 022871 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKGNAYAQVAISTDD--- 232 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~h~~~~v~d--- 232 (291)
+.|.|+|++++.+||+++|||++.... ..+..+... + ...+.+........ ....++..|++|.+++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 578999999999999999999965431 123333222 1 23444543322111 1123467899999986
Q ss_pred hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 233 VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++++++++ +++|+++..+|...++ ++.++|+||+||+|||+
T Consensus 73 ~~~~~~~~----~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEW----QAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHH----HHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 55666666 9999999988877766 37899999999999997
No 129
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.56 E-value=1.8e-13 Score=99.12 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=73.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEE--EEE
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF--AIA 99 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i--~~~ 99 (291)
++|+|+.|.|+|++++.+||+ .|||++..+.+ ...+...+.. ...+.+.... ..++.|+ .+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGND--HRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCCC--ceEEEeecCC-------CCceeeEEEEeE
Confidence 478999999999999999997 69999865421 1222222222 2223332211 1234444 455
Q ss_pred eCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 100 TEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 100 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
++|+++++++|+++|+++...+ .+++.. .++|.||+||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~~~~-~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGADPD-GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcCCCC-EEEEECCCCCEEEEecCC
Confidence 6899999999999999987654 223333 388999999999998654
No 130
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.56 E-value=8.8e-14 Score=102.52 Aligned_cols=114 Identities=24% Similarity=0.241 Sum_probs=75.7
Q ss_pred ceeEEeeeCCccccHHHHHhh---hCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEe
Q 022871 154 LCQVMLRVGDLGRSIKFYEKA---LGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAIST 230 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~---lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v 230 (291)
+.|+.|.|+|++++.+||+++ ||++..... .+ ..+. +.... ....+.+....+..+. ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~--~~~~-~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP--GAVG-YGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC--ceeE-eccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999999 588865432 11 1222 22211 2344555443222111 223457999999
Q ss_pred cc---hhhhHHHHHHHHHHhCCeeecCCcccCC--CCceEEEEECCCCCeEEEE
Q 022871 231 DD---VYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 231 ~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~Dp~G~~iel~ 279 (291)
+| ++++++++ .++|+++..+|...++ .+.+.+|++||+|+.|||+
T Consensus 73 ~~~~~v~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAA----LAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHH----HHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 44455555 9999998888766553 2335789999999999996
No 131
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.55 E-value=1.1e-13 Score=101.83 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=75.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeecc---CCCCcccCCCCeeEEEEEe
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN---YGVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~i~~~v 100 (291)
++||+|.|+|++++++||++ |||++...... ...+.+..++ ...+.+..... ........+.+..+++|.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG-GVRLAWDTVESIRSFTPGWTPTGGHRIALAFLC 74 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC-CEEEEEEcccceeeecCCCCCCCCCcEEEEEEc
Confidence 57999999999999999975 99997543221 1123333321 12222211000 0000011223456788876
Q ss_pred C---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 101 E---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 101 ~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
. |+++++++|+++|+++..+|.+.++|.+ .++++||+||+|+|.
T Consensus 75 ~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~-~~~~~DPdG~~iel~ 121 (122)
T cd07235 75 ETPAEVDALYAELVGAGYPGHKEPWDAPWGQR-YAIVKDPDGNLVDLF 121 (122)
T ss_pred CCHHHHHHHHHHHHHCCCCcCCCCccCCCCCE-EEEEECCCCCEEEEe
Confidence 4 8999999999999998888777777765 488999999999986
No 132
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=2.7e-13 Score=99.48 Aligned_cols=112 Identities=24% Similarity=0.398 Sum_probs=77.3
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCC--
Q 022871 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATED-- 102 (291)
Q Consensus 25 ~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d-- 102 (291)
-|+.|.|+|++++.+||+++||++...+.+ . ...+ ..++.. +.+.+..+... ...++.|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~---~~~~-~~~~~~--~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D---YAKF-LLEDPR--LNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C---eeEE-EecCCc--eEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998765532 1 1222 222222 22333222111 11478899999987
Q ss_pred -HHHHHHHHHHcCCeEecCCcccCC-CceEEEEEECCCCCEEEEEeCC
Q 022871 103 -VYKLVENIRAKGGNVTREPGPLKG-GTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 103 -~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~~dp~G~~iel~~~~ 148 (291)
+++++++|.++|+++...+....+ +....++++||+|++|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 788999999999998766543321 1223588999999999999754
No 133
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.55 E-value=2.3e-13 Score=97.67 Aligned_cols=112 Identities=31% Similarity=0.449 Sum_probs=80.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHH
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
|+.|.|+|++++.+||+++|||+....... ......++..+ . ..+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~--~--~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG--G--TRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC--C--ceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998877542 11234445443 2 23444433222111345578999999999999
Q ss_pred HHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEE
Q 022871 106 LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 106 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
++++|.++|+.+...+....++.. .+++.||+|+.++|
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPWGGR-VAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCCCcE-EEEEECCCCcEEeC
Confidence 999999999998876653333344 48999999999985
No 134
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.55 E-value=1e-13 Score=101.74 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=75.6
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhh
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
...|.|+|++++++||++ |||++...... . +..+..+ +..+.+....... ......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 457899999999999999 99997654321 2 2333322 2355554422111 12234689999999999
Q ss_pred hHHHHHHHHHHhCCeee-------cCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 236 SAEVVNLVTQELGGKIT-------RQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~-------~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
+++++ +++|+++. .+|...++ +.+.++++|||||+|||.|.
T Consensus 72 ~~~~l----~~~G~~~~~~~~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEF----RAAGLPETGSGIPRITPPEDQPW-GMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHH----HHhCccccccCCCcccCCcCCCC-ceeEEEEECCCCCEEEeecC
Confidence 99999 99999742 33444445 46899999999999999874
No 135
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.55 E-value=1.4e-13 Score=100.99 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=75.9
Q ss_pred eeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecc--
Q 022871 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDD-- 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~d-- 232 (291)
.|+.|.|+|++++.+||+++||++..... +. +..+... . ....+.+..+... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~---~~-~~~~~~~--~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR---DD-YAKFLLE--D--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc---CC-eeEEEec--C--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 59999999999999999999999865432 11 2222222 1 1233333221111 11478899999988
Q ss_pred -hhhhHHHHHHHHHHhCCeeecCCcccC-CCCceEEEEECCCCCeEEEEech
Q 022871 233 -VYKSAEVVNLVTQELGGKITRQPGSIP-GLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 233 -i~~~~~~l~~~~~~~G~~~~~~p~~~~-~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+++..+++ .++|+++...|.... +..++.+|++||+|++|||+++.
T Consensus 71 dl~~~~~~l----~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARA----EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHH----HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 45555555 999999887765433 22247899999999999999854
No 136
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=1.1e-13 Score=101.73 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=76.7
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcc------eeccCcceeEEE
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT------EYTKGNAYAQVA 227 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~------~~~~~~~~~h~~ 227 (291)
+.+|.|.|.|++++.+||+++|||++... .++.+ .++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999997753 12222 23332222 233332221110 111234678999
Q ss_pred EEec--chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 228 ISTD--DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 228 ~~v~--di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
|.++ |++++++++ .++|+++...+. ..+ +++.+|++||+|++|||++.
T Consensus 73 ~~v~~~dl~~~~~~l----~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHL----EAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHH----HhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 9984 677777777 999999866554 233 35889999999999999863
No 137
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.54 E-value=9e-14 Score=100.19 Aligned_cols=95 Identities=25% Similarity=0.304 Sum_probs=74.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcc--cCCCCeeEEEEEeCC
Q 022871 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFGHFAIATED 102 (291)
Q Consensus 25 ~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~~~v~d 102 (291)
+||+|.|+|++++++||+++||++.......+.......++..+++. ..+++..+....++ ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988776666666777777766533 45565554333222 267799999999999
Q ss_pred HHHHHHHHHHcCCeEecCC
Q 022871 103 VYKLVENIRAKGGNVTREP 121 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~ 121 (291)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987653
No 138
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.54 E-value=8e-14 Score=102.94 Aligned_cols=112 Identities=23% Similarity=0.215 Sum_probs=74.4
Q ss_pred eeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc------ce-eccCcceeEEE
Q 022871 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TE-YTKGNAYAQVA 227 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~-~~~~~~~~h~~ 227 (291)
.+++|.|.|++++++||++ |||++........ ...+... + ...+.+...... .. .+.+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5899999999999999976 9998653222211 2222221 1 234444322100 00 01234567999
Q ss_pred EEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 228 ISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 228 ~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
|.|++ ++++++++ +++|+++..+|...++ ++.+|++|||||+|||+-
T Consensus 74 f~v~~~~~vd~~~~~l----~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKA----LAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHH----HHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99985 56666666 9999999888877665 477899999999999973
No 139
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.54 E-value=1.9e-13 Score=100.88 Aligned_cols=113 Identities=26% Similarity=0.353 Sum_probs=72.7
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccC-C---CCc-ccCCCCeeEEE--E
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY-G---VTS-YDIGTGFGHFA--I 98 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~g~~~i~--~ 98 (291)
||+|.|+|++++++||+++|||++..... ....+..++ ..+.+.+.... . ... .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999865421 112222222 12222222111 0 000 01122445664 5
Q ss_pred EeCCHHHHHHHHHHcCCeEecCCcccCC---CceEEEEEECCCCCEEEEEe
Q 022871 99 ATEDVYKLVENIRAKGGNVTREPGPLKG---GTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~---g~~~~~~~~dp~G~~iel~~ 146 (291)
.++|+++++++|+++|+++..+|..... +....++|+|||||+|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 6789999999999999998876653221 22345899999999999874
No 140
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.54 E-value=9.5e-14 Score=102.18 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=74.3
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeec-----CcceeccCcceeEEEE
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY-----GVTEYTKGNAYAQVAI 228 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~-----~~~~~~~~~~~~h~~~ 228 (291)
+.||+|.|+|++++++||++ |||++...... ..+.. +..+. ...+.+.... .+.....+++..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~~~--~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPHVE--AVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCcEE--EEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99986532211 11111 12111 1222221110 0000012235568888
Q ss_pred Eec---chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 229 STD---DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 229 ~v~---di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
.+. |++++++++ +++|+++..+|...++ +.+.++++||+||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAEL----VGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHH----HHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 875 688888888 9999999888887777 458899999999999996
No 141
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.54 E-value=3.1e-13 Score=97.70 Aligned_cols=109 Identities=28% Similarity=0.412 Sum_probs=77.3
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHHH
Q 022871 28 VYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKLV 107 (291)
Q Consensus 28 ~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~~ 107 (291)
.|.|+|++++++||+++|||++..... .. ...++..+ ... +.+......... ...+..|++|.++|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~--~~~--~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG--GAQ--LMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC--CEE--EEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 689999999999999999999877643 11 23444432 222 333322221111 2345668999999999999
Q ss_pred HHHHHcCCe-EecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 108 ENIRAKGGN-VTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 108 ~~l~~~G~~-~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++.++|+. +..++...++|.. .++++||+|+.|+|+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g~~-~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWGMR-EFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcccE-EEEEECCCCCEEEecC
Confidence 999999998 5666666666544 4889999999999975
No 142
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.53 E-value=3e-13 Score=114.54 Aligned_cols=119 Identities=21% Similarity=0.349 Sum_probs=82.9
Q ss_pred CceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCC--C-ceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEE
Q 022871 20 DKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPE--E-KYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHF 96 (291)
Q Consensus 20 ~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 96 (291)
.+.+|+||+|.|+|++++.+||+++|||++..+...+. + .+...++..++... .+.+... ....+++|+
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~--~~~l~~~------~~~~~~~Hi 210 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHH--SLAFAAG------PSEKRLNHL 210 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcc--eEEEecC------CCCCceEEE
Confidence 36899999999999999999999999999876532211 1 11345555433222 1222111 123479999
Q ss_pred EEEeCCHHH---HHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 97 AIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+|.|+|+++ ++++|+++|+ ....+...+.+...++|++||+|+++|+...
T Consensus 211 af~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 211 MLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 999988776 7999999999 4444443333445568999999999999874
No 143
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=4e-13 Score=97.61 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=76.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCc-ccCCCCeeEEEEEeCC---
Q 022871 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTS-YDIGTGFGHFAIATED--- 102 (291)
Q Consensus 27 v~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~~~v~d--- 102 (291)
+.|.|+|++++++||+++|||++..... . ...+..++ .. .+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~--~~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----T--FALFVLGS-GV--KLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----c--eEEEEeCC-Cc--EEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999765421 1 22233322 22 233333222111 1123467899999975
Q ss_pred HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 103 VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 103 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
++++++++.++|+++..+|...++|. .++|+||+||+|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g~--~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFGY--TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCcc--EEEEECCCCCEEEee
Confidence 88899999999999988887777663 478999999999986
No 144
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.53 E-value=1.4e-13 Score=98.85 Aligned_cols=112 Identities=29% Similarity=0.391 Sum_probs=81.4
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhh
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYK 235 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~ 235 (291)
|+.+.|+|++++.+||+++|||+......... .....+..+ ...+.+....+......+++..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 78999999999999999999999776543211 233334422 355666554333211234678899999999998
Q ss_pred hHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022871 236 SAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 236 ~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
..+++ .+.|+.+..++....+ +.+.+|+.||+|+.|||
T Consensus 75 ~~~~l----~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERL----KAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHH----HHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 88888 9999998877652223 46899999999999986
No 145
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.52 E-value=1e-12 Score=94.67 Aligned_cols=121 Identities=25% Similarity=0.282 Sum_probs=86.9
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
++...+.|..|.++|++++.+||+++|||++....+... ...+.+..+.....=.+.- ......+.+-..+.|
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~--~~y~~f~~~~~~~gG~l~~-----~~~~~p~~~~~~iy~ 77 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGE--MRYAVFPADGAGAGGGLMA-----RPGSPPGGGGWVIYF 77 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCC--ceEEEEECCCccccceecc-----CCcCCCCCCCEEEEE
Confidence 346678999999999999999999999999876644321 2333333222111001110 011112235568889
Q ss_pred EeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
.|+|+++..+|.+++|.+++.++.+.+++.+. +.+.||+||+|.|++.
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~-a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPGGGRI-AHFVDPEGNRFGLWSP 125 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCCceEE-EEEECCCCCEEEEeec
Confidence 99999999999999999999999999976654 8999999999999875
No 146
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.52 E-value=5.1e-13 Score=98.03 Aligned_cols=108 Identities=22% Similarity=0.202 Sum_probs=74.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHH
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYK 105 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~ 105 (291)
...|.|+|++++++||++ |||++..+... ..+++..++ . .+.+....... ......+++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~~--~--~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRGD--L--ELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcCC--E--EEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 467999999999999999 99998765331 134444332 2 23333221111 11233578999999999
Q ss_pred HHHHHHHcCCeEe-------cCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 106 LVENIRAKGGNVT-------REPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 106 ~~~~l~~~G~~~~-------~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
++++|+++|+++. ..+...++|.+ .++|+||+||+|+|.+.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~-~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWGMR-EFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCcee-EEEEECCCCCEEEeecC
Confidence 9999999999742 23344455554 48999999999999874
No 147
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=6.4e-14 Score=108.92 Aligned_cols=127 Identities=39% Similarity=0.671 Sum_probs=106.6
Q ss_pred CCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCC-----------cceeEEEecccCCCceeEEEeeeecCcceecc
Q 022871 151 PEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPE-----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK 219 (291)
Q Consensus 151 ~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 219 (291)
..+.-|+.+.|.|.+++++||+++|||.+......++ ++++-.++++++++.+++++|+.|++...+..
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 4567899999999999999999999999887665554 67788889999999999999999999988999
Q ss_pred CcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhhhhhhc
Q 022871 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFLKEIQS 290 (291)
Q Consensus 220 ~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~~~~~~ 290 (291)
|+++.|+.+.++|+-+.++.+ ..-|.+ ..+.-.+++.||||..|+|.++.+..+++|+
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v----~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~ 152 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKV----NAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQ 152 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHh----cCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEE
Confidence 999999999999888877777 554432 1123568899999999999998888777764
No 148
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.50 E-value=5.2e-13 Score=96.72 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=71.3
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeE--EEEEe
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQ--VAIST 230 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h--~~~~v 230 (291)
.+.|+.|.|.|++++.+||+ .|||++.... + ... +...+. ....+.+.... ..+..| +.+.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~~~-~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--GLE-LRTAGN--DHRWARLLEGA-------RKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--ceE-EEecCC--CceEEEeecCC-------CCceeeEEEEeEh
Confidence 58999999999999999997 6999976432 1 122 222111 23344443211 123344 55556
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+|++++++++ +++|+++...+. ++ +.+.+||.||+||+|||..
T Consensus 66 ~d~~~~~~~l----~~~Gi~~~~~~~--~~-~~~~~~~~DP~Gn~iel~~ 108 (112)
T cd08344 66 DDFAAFARHL----EAAGVALAAAPP--GA-DPDGVWFRDPDGNLLQVKV 108 (112)
T ss_pred hhHHHHHHHH----HHcCCceecCCC--cC-CCCEEEEECCCCCEEEEec
Confidence 8899998888 999999876652 22 2467999999999999984
No 149
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=7e-13 Score=97.88 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=75.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccC------CCCcc-cCCCCeeEEE
Q 022871 25 LHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY------GVTSY-DIGTGFGHFA 97 (291)
Q Consensus 25 ~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~g~~~i~ 97 (291)
.++.|.|+|++++++||++ |||+...+...++ ...+..++ .. .+.+.... ..... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~-~~--~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD-NI--FVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC-ce--EEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 6899999999999999987 9999865332221 12233332 22 22222110 00000 1233457999
Q ss_pred EEeC---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 98 IATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 98 ~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
|.|+ |+++++++++++|+++..+|...++ .+ .++|+|||||+|||+.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~-~~-~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGF-MY-GRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCc-eE-EEEEECCCCCEEEEEE
Confidence 9997 5889999999999998877766664 33 3789999999999974
No 150
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.49 E-value=3.7e-13 Score=99.36 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=71.8
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcc----e-eccCcceeEEE--E
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT----E-YTKGNAYAQVA--I 228 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~----~-~~~~~~~~h~~--~ 228 (291)
|+.|.|+|++++++||+++|||++..... .+..+...+ ....+.+....... . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999998753211 111122111 12222222111000 0 01112445665 4
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccC---CCCceEEEEECCCCCeEEEEe
Q 022871 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIP---GLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~---~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.++|+++++++| +++|+++..+|.... .++++.+|++|||||+|||..
T Consensus 74 ~~~dv~~~~~~l----~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERL----EAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHH----HHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 667888888888 999999987775421 123588999999999999974
No 151
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=4.8e-13 Score=97.06 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=72.1
Q ss_pred EEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchhhh
Q 022871 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVYKS 236 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~~~ 236 (291)
..|.|+|++++++||++ |||++.... ..+ .++..+ ...+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~--~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNL--AYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCE--EEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 46889999999999987 999987643 123 333322 233434321111 112345799999999999
Q ss_pred HHHHHHHHHHhCCeee-----cCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 237 AEVVNLVTQELGGKIT-----RQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 237 ~~~l~~~~~~~G~~~~-----~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
++++ +++|+++. .+|...++ +++.++++|||||+|+|.+
T Consensus 70 ~~~l----~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHI----KALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHH----HHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 9999 99998743 34444455 4699999999999999975
No 152
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.47 E-value=7.8e-13 Score=96.98 Aligned_cols=110 Identities=24% Similarity=0.245 Sum_probs=74.2
Q ss_pred EEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc------ceeccCcceeEEEEEe
Q 022871 157 VMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV------TEYTKGNAYAQVAIST 230 (291)
Q Consensus 157 v~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~------~~~~~~~~~~h~~~~v 230 (291)
|.|.|.|++++.+||+++|||.+... .+..+. ++..+ +..+.+...... .....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~---~~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD---SNDGVA--FFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc---CCCceE--EEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 67999999999999999999997654 112222 23321 234554332110 0011222444566665
Q ss_pred ---cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 231 ---DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 231 ---~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+|++++++++ ++.|+++..+|...++ +++.+|++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l----~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARA----AAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHH----HhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 5677777777 9999999888876665 4689999999999999975
No 153
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.46 E-value=4.4e-13 Score=96.59 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=75.0
Q ss_pred eeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce--eccCcceeEEEEEecc
Q 022871 155 CQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKGNAYAQVAISTDD 232 (291)
Q Consensus 155 ~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~h~~~~v~d 232 (291)
+||++.|+|++++.+||+++||+...........+....++..+.+ ...++|+++.+... ...+.+++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999987766555555556666554332 27889988766543 2367799999999999
Q ss_pred hhhhHHHHHHHHHHhCCeeecCC
Q 022871 233 VYKSAEVVNLVTQELGGKITRQP 255 (291)
Q Consensus 233 i~~~~~~l~~~~~~~G~~~~~~p 255 (291)
++++++++ +++|++++..+
T Consensus 79 ~d~~~~~l----~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARL----EAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHH----HHTTECEEECE
T ss_pred HHHHHHHH----HHCCCEEcccC
Confidence 99999999 99999987664
No 154
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=2.4e-12 Score=94.38 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=73.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccC------CCCcccCCCCeeEEEEEe
Q 022871 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNY------GVTSYDIGTGFGHFAIAT 100 (291)
Q Consensus 27 v~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~i~~~v 100 (291)
|.|.|+|++++.+||+++|||++..+. .+ ...++..++ ..+.+.... .......+.+..++++.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 11 133444322 223332211 111111222334455554
Q ss_pred ---CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 101 ---EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 101 ---~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+|++++++++.+.|+++..++...++|... ++++||+||+|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWGGYS-GYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCCceE-EEEECCCCCEEEEee
Confidence 689999999999999998777666665544 889999999999875
No 155
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=8.3e-13 Score=96.41 Aligned_cols=125 Identities=34% Similarity=0.508 Sum_probs=82.6
Q ss_pred ceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCC---------CC------ceeEEEeeccCCCC
Q 022871 21 KRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGP---------EQ------SHFVVELTYNYGVT 85 (291)
Q Consensus 21 ~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~---------~~------~~~~~~~~~~~~~~ 85 (291)
-..+.|.++.++|+.++..||++++|+.++.+...+.-.+...+++... .. ....+++.++.+..
T Consensus 20 t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte 99 (170)
T KOG2944|consen 20 TYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE 99 (170)
T ss_pred hhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC
Confidence 4556899999999999999999999998876644433222222222210 00 00124555543321
Q ss_pred -----ccc----CCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 86 -----SYD----IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 86 -----~~~----~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
.+. .+.|.+||||.|+|+.++.++|++.|+++...+.+..- ...+++.||||+.|||...
T Consensus 100 s~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 100 SPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccc--cceeEEECCCCCeEEEeec
Confidence 111 23489999999999999999999999996654433322 1358899999999999764
No 156
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=3.7e-13 Score=98.22 Aligned_cols=73 Identities=26% Similarity=0.429 Sum_probs=56.8
Q ss_pred eeEEEeeeecCcce-----eccC---c-ceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCC
Q 022871 203 TTVLELTYNYGVTE-----YTKG---N-AYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDG 273 (291)
Q Consensus 203 ~~~l~l~~~~~~~~-----~~~~---~-~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G 273 (291)
...++|..+++... +..+ + |.+||||.|+||+++..++ ++.|+++...|....- -..+|+.||||
T Consensus 87 ~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~l----kekGV~f~Kk~~dGk~--K~iaF~~dpDg 160 (170)
T KOG2944|consen 87 NAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERL----KEKGVRFKKKLKDGKM--KPIAFLHDPDG 160 (170)
T ss_pred cCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHH----HHhCceeeecCCCccc--cceeEEECCCC
Confidence 45778887776543 1222 3 8999999999999999999 9999998777764211 15799999999
Q ss_pred CeEEEEec
Q 022871 274 WKTVLVDN 281 (291)
Q Consensus 274 ~~iel~~~ 281 (291)
+.|||..+
T Consensus 161 ywiei~~~ 168 (170)
T KOG2944|consen 161 YWIEIELE 168 (170)
T ss_pred CeEEEeec
Confidence 99999865
No 157
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.43 E-value=2.4e-12 Score=93.36 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=70.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCHHHH
Q 022871 27 AVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDVYKL 106 (291)
Q Consensus 27 v~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~~~~ 106 (291)
..|.|+|++++++||++ |||++....+ ...++..++ ..+.+. ..... . ..+-.+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~~l~l~--~~~~~-~---~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--CAFYLQ--DYYVK-D---WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--EEEEee--cCCCc-c---cccCCEEEEEECCHHHH
Confidence 46889999999999988 9999976532 134555432 222222 11111 1 11234788999999999
Q ss_pred HHHHHHcCCeEe-----cCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 107 VENIRAKGGNVT-----REPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 107 ~~~l~~~G~~~~-----~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+++|+++|+.+. ..+...++|.+ .++|+|||||+++|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g~r-~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWWGR-EFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCCcE-EEEEECCCccEEEeeC
Confidence 999999998643 23334455554 4999999999999864
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.34 E-value=1.7e-11 Score=97.19 Aligned_cols=100 Identities=24% Similarity=0.380 Sum_probs=73.2
Q ss_pred ceeeeEEEEEeC--CHHHHHHHHHHhcCCEEEEeeecCC--CceeeEEEecCCCCceeEEEeeccCCC---C---c---c
Q 022871 21 KRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPE--EKYSNAFLGFGPEQSHFVVELTYNYGV---T---S---Y 87 (291)
Q Consensus 21 ~~~i~hv~l~v~--d~~~a~~fy~~~LG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~---~ 87 (291)
+.+++||++.|+ |++++++||+++|||+.......++ .+.....+..++. .+.+++..+... . . .
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g--~i~l~L~~~~~~~~~s~~~~fl~~ 78 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDG--KIRIPLNEPASGKRKSQIQEFLEY 78 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCC--cEEEEEecCCCCCCccHHHHHHHH
Confidence 468999999999 9999999999999999887765433 2333444443332 344555433221 1 1 1
Q ss_pred cCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCc
Q 022871 88 DIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 88 ~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
..|+|++||||.|+|+++++++|+++|+.+...|.
T Consensus 79 ~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 79 YGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred hCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 24789999999999999999999999999877654
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.22 E-value=7e-11 Score=93.63 Aligned_cols=99 Identities=20% Similarity=0.332 Sum_probs=73.1
Q ss_pred CCceeEEeeeC--CccccHHHHHhhhCCeeeeeeccCC--cceeEEEecccCCCceeEEEeeeecCc--c-------eec
Q 022871 152 EPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPE--YKYTLAMLGYAEEDQTTVLELTYNYGV--T-------EYT 218 (291)
Q Consensus 152 ~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~l~~~~~~--~-------~~~ 218 (291)
..++|+++.|+ |++++.+||+++|||+........+ .......+..+ .....++|..+.+. . ..+
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHh
Confidence 35899999999 9999999999999999876654333 22333334422 23566777654431 1 122
Q ss_pred cCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCc
Q 022871 219 KGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPG 256 (291)
Q Consensus 219 ~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~ 256 (291)
.|+|++|+||.|+|++++++++ +++|++++..|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L----~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAAL----RARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHH----HHcCCeeccCch
Confidence 4789999999999999999999 999999988873
No 160
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.22 E-value=2.4e-10 Score=78.79 Aligned_cols=118 Identities=29% Similarity=0.330 Sum_probs=75.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC-Cc-ccCCC--CeeEE--
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV-TS-YDIGT--GFGHF-- 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--g~~~i-- 96 (291)
.+-|++|.|+|++++.+||+++||++.-.+.+ .|+.+.-....+...+...... .. ...+. .+.|+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 45799999999999999999999998644322 2221111111122222221111 11 11122 23454
Q ss_pred EEEeCCHHHHHHHHHHcCCeEecCCcccC---CCceEEEEEECCCCCEEEEEeCC
Q 022871 97 AIATEDVYKLVENIRAKGGNVTREPGPLK---GGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 97 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~---~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.+.++|.-++.+||+++|+....+|.-.. -|..+.+++.||.||.+|+-.-.
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 46678999999999999999777765332 24566688999999999987544
No 161
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.17 E-value=2.6e-10 Score=99.26 Aligned_cols=104 Identities=22% Similarity=0.357 Sum_probs=74.1
Q ss_pred CCCCceeeeEEEEEeC--CHHHHHHHHHHhcCCEEEEeeecCCC--ceeeEEEecCCCCceeEEEeeccCC---CC----
Q 022871 17 PKKDKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYG---VT---- 85 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~--d~~~a~~fy~~~LG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 85 (291)
..+.+.+++||++.|+ |+++++.||+++|||+...+.+.... +.....+...++ .+.+++..+.. ..
T Consensus 152 ~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g--~~~i~L~ep~~~~~~s~i~~ 229 (353)
T TIGR01263 152 PGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDG--KVKIPLNEPASGKDKSQIEE 229 (353)
T ss_pred CCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCC--cEEEEEeccCCCCCCCHHHH
Confidence 3456999999999999 99999999999999999876654321 222122222222 34455554311 11
Q ss_pred --cccCCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCc
Q 022871 86 --SYDIGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 86 --~~~~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
....|.|++||||.|+|+++++++|+++|+.+...|.
T Consensus 230 fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 230 FLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred HHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 1224789999999999999999999999999887654
No 162
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.16 E-value=6.4e-10 Score=89.30 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=86.5
Q ss_pred CCCCCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCc-ceeccCcceeEEE
Q 022871 149 PTPEPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGV-TEYTKGNAYAQVA 227 (291)
Q Consensus 149 ~~~~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~h~~ 227 (291)
..+..+..|.|.|.|++....||++++|+++..+... ...+..++ ...+.|.+..+. .+.+...|+.|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC---EEEEEEEeCCCCCCCCccccceeeee
Confidence 3456788999999999999999999999998765432 12233222 245555543322 2234667999999
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|-+++-.++.+.+ .++.+.|+.+. +...+.. .-.+||.||+||-||+..+.+
T Consensus 77 fLlP~r~~L~~~l-~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 77 FLLPTREDLARVL-NHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred eecCCHHHHHHHH-HHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 9999855554444 55588898875 5555544 367999999999999998754
No 163
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=99.09 E-value=1.4e-09 Score=85.16 Aligned_cols=150 Identities=22% Similarity=0.326 Sum_probs=84.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCC---Cc-c-----cCCCCee
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGV---TS-Y-----DIGTGFG 94 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-----~~~~g~~ 94 (291)
|+|+.+.|+|++++.++|++.|||++......+..+.....+.+++...+++- +...... .. + ..+.|+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~-i~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIA-IDPEAPAPDRGRWFGLDRLAGGEGLY 79 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEE-ES-HHHSTGGGT-TTTHHHHT--EEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEE-eCCcccccccccceechhhcCCCCeE
Confidence 68999999999999999988899999998888776777777777654322222 2111111 11 1 1467999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCce--EEEEEECC----CCCEEEEEeCCC-C---------CCCceeEE
Q 022871 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTT--HIAFVKDP----DGYIFELIQRGP-T---------PEPLCQVM 158 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~--~~~~~~dp----~G~~iel~~~~~-~---------~~~~~hv~ 158 (291)
.+|+.++|+++..++|.+.|+.... +...+++.. ..+++.++ .+..-.+++... . ...+.+|.
T Consensus 80 ~~~l~t~d~~~~~~~l~~~G~~~~~-r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~~v~ 158 (175)
T PF13468_consen 80 GWALRTDDIEAVAARLRAAGLDAGS-RVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGITRVV 158 (175)
T ss_dssp EEEEE-S-HHHHHHHHHTTT-EEEE-EEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEEEEE
T ss_pred EEEEecCCHHHHHHHHHhcCCCCCC-cCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEEEEE
Confidence 9999999999999999999986221 122222222 23444553 245555564332 1 13589999
Q ss_pred eeeCCccccHHHHHhhh
Q 022871 159 LRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 159 l~v~D~~~~~~Fy~~~l 175 (291)
+.++|++++.++|.++|
T Consensus 159 i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 159 IAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEETTHHHHHHHHHHH-
T ss_pred EEeCCHHHHHHHHHhhC
Confidence 99999999999999875
No 164
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.07 E-value=2.7e-09 Score=79.11 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=70.2
Q ss_pred Eeee-CCccccHHHHHhhhCCeeeeeeccCC----------cceeEEEecccCCCceeEEEeeeecCcceeccCcceeEE
Q 022871 158 MLRV-GDLGRSIKFYEKALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQV 226 (291)
Q Consensus 158 ~l~v-~D~~~~~~Fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~ 226 (291)
.|.+ .|.+++++||+++||+++.......+ +.+....+..+ +..+.+....+.... .+++..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4667 89999999999999999876543211 11112222211 223333322221111 12345679
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
++.|+|++++ ++++++|.+ |++++.+|...++ +.+.++++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v-~~~~~~l~~-~g~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEA-DRLFEALSE-GGTVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHH-HHHHHHHhc-CCeEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 9999874333 333444365 4588888888887 468999999999999984
No 165
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.06 E-value=2.3e-08 Score=73.53 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=86.8
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEEEeeecCC----------CceeeEEEecCCCCceeEEEeeccCCCCcccCCC-Cee
Q 022871 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRDVPE----------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGT-GFG 94 (291)
Q Consensus 27 v~l~v~-d~~~a~~fy~~~LG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 94 (291)
..|..+ |.++|++||+++||.+.+.+...++ +...++.+.+++. .+.+ ....+......+. --.
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~--~im~--sd~~~~~~~~~~~~~s~ 79 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS--TIML--SDAFPDMGATEGGGTSL 79 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE--EEEE--ecCCCccCcccCCCeeE
Confidence 457788 9999999999999999998877766 5666677776532 1211 1111111111222 234
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC
Q 022871 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
.|.+.+.|++++++|+.+.|+++..+..+..+|.+. ..++||.|+.|-|.....
T Consensus 80 ~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~-G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 80 SLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRY-GQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEEehHHHHHHHHHHhcCCeEEecchhcCcccce-EEEECCCCCEEEEecCcc
Confidence 567788889999999999999999999999998764 889999999999876643
No 166
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.04 E-value=3.7e-09 Score=73.03 Aligned_cols=115 Identities=22% Similarity=0.291 Sum_probs=72.7
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce--eccC----cceeEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE--YTKG----NAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~----~~~~h~ 226 (291)
.+.|+.+.|.|++++++||.++||...-... + .+..++.-+ ......+....+... ...+ ....-+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRst---d---~wvdfDfyG--HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRST---D---TWVDFDFYG--HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhccccccccc---c---eEEEeeecc--cEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 4679999999999999999999999854322 1 222222111 112222211111000 0011 122345
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcc----cCCCCceEEEEECCCCCeEEEEe
Q 022871 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGS----IPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~----~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.|.++|..++.+++ +++|+.+..+|.- .++ -++.+++.||+||.+|+-.
T Consensus 76 Vl~~edW~alaerl----ea~gi~~~i~P~vRF~Ge~g-Eq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 76 VLPVEDWFALAERL----EAAGIPFHIPPKVRFKGEPG-EQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEHHHHHHHHHHH----HHcCCCcccCceEEecCCcc-ceEEEEEECCCCCeeeeec
Confidence 66788888888888 9999998888854 233 3578999999999999854
No 167
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.01 E-value=1e-08 Score=75.32 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=80.2
Q ss_pred EeeeC-CccccHHHHHhhhCCeeeeeeccCC----------cceeEEEecccCCCceeEEEeeeecCcceecc-CcceeE
Q 022871 158 MLRVG-DLGRSIKFYEKALGMKLLRTVDKPE----------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTK-GNAYAQ 225 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~-~~~~~h 225 (291)
-|.+. |.+++++||+++||.++..+....+ +...-..+..+ +..|-+....+...... ++...-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 36677 9999999999999998877765544 22222222221 22333323222222222 234456
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
|.+.++|+++..+++ .+.|+++..++....|+ .++..++||.|+.|-|.....
T Consensus 81 l~~~~~d~da~f~~a----~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERA----AAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHH----HhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 778888877777777 99999999999999884 699999999999999986543
No 168
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.01 E-value=3e-08 Score=73.42 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=73.4
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCEEEEeeec----------CCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeE
Q 022871 27 AVYRV-GDLDRTIKFYTECFGMKLLRKRDV----------PEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 27 v~l~v-~d~~~a~~fy~~~LG~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
..|.+ .|.++|++||+++||+++...... ..+....+.+.+++. .+.+ ......... .+.+-.+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~--~l~~--~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ--RLMA--SDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE--EEEE--EcCCCCCCC-CCCCCEE
Confidence 35667 899999999999999998876531 123334555555432 2222 111111111 1223457
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEE
Q 022871 96 FAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 96 i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
+++.|+| +++++++|.+.| ++..++...++|.+. +.++||+|+.|+|
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~-~~v~Dp~G~~W~i 127 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLF-GWVTDRFGVSWQI 127 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCccccc-EEEECCCCCEEEe
Confidence 8888876 778889987766 788787888887754 8899999999987
No 169
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.96 E-value=1.1e-08 Score=71.97 Aligned_cols=118 Identities=23% Similarity=0.224 Sum_probs=73.2
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeec----C--cceeccCcceeEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNY----G--VTEYTKGNAYAQV 226 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~----~--~~~~~~~~~~~h~ 226 (291)
....|+|.|.|++++.+||+. |||+.-+..... ........ . .-..+-|.... - .-.....+.-..+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde--~a~~mi~~--~--ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDE--DAACMIIS--D--NIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccc--cceeEEEe--c--cEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 356899999999999999977 999865433221 12222222 1 01222221100 0 0011233456788
Q ss_pred EEEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 227 AISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 227 ~~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
+|.+.+ +++.++++ .++|++...+|..... .+..-|.|||||.||++--++
T Consensus 76 ~ls~~s~eevd~~v~ka----~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 76 SLSAGSREEVDELVDKA----LEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EeccCcHHHHHHHHHHH----HHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeCH
Confidence 998875 55555555 9999998777766544 345679999999999986544
No 170
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.96 E-value=3.2e-09 Score=92.05 Aligned_cols=101 Identities=21% Similarity=0.344 Sum_probs=73.4
Q ss_pred CCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCC-----ceeeEEEecCCCCceeEEEeeccCC-------CCc
Q 022871 19 KDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEE-----KYSNAFLGFGPEQSHFVVELTYNYG-------VTS 86 (291)
Q Consensus 19 ~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 86 (291)
..+.+|+||++.|++++.++.||+++|||+.....+.++. +.....+..++. .+.+++..+.. ...
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g--~v~ipLnEP~~~~~~~SqI~e 253 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNE--MVLLPLNEPTFGTKRKSQIQT 253 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCC--cEEEEeccCCCCCCCcChHHH
Confidence 3488999999999999999999999999998865543221 234444443333 34455544321 122
Q ss_pred c---cCCCCeeEEEEEeCCHHHHHHHHHHc----CCeEecCC
Q 022871 87 Y---DIGTGFGHFAIATEDVYKLVENIRAK----GGNVTREP 121 (291)
Q Consensus 87 ~---~~~~g~~~i~~~v~d~~~~~~~l~~~----G~~~~~~~ 121 (291)
+ ..|+|++||||.|+|+.++.++|+++ |+.++..|
T Consensus 254 FL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 254 YLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 2 35789999999999999999999999 99887644
No 171
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.92 E-value=4.8e-09 Score=77.53 Aligned_cols=122 Identities=22% Similarity=0.383 Sum_probs=73.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCce--eeEEEecCCC-CceeEEEe--------eccCCCC-cccC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKY--SNAFLGFGPE-QSHFVVEL--------TYNYGVT-SYDI 89 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~--------~~~~~~~-~~~~ 89 (291)
++++|++|.|+|++++.+||+++||++...+........ .......... ........ ....... ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 468999999999999999999999999988754332211 1111111110 00000000 0000000 0011
Q ss_pred C-CCeeEEEEEeCC---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEe
Q 022871 90 G-TGFGHFAIATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQ 146 (291)
Q Consensus 90 ~-~g~~~i~~~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~ 146 (291)
+ .+..|+++.+.+ .......+...|..+..... ...+. .+|++||||+.+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~--~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGV--HVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcce--EEEEECCCCcEEEeeC
Confidence 1 247799999988 66667777788888655433 22222 5899999999999864
No 172
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.91 E-value=9.7e-08 Score=66.99 Aligned_cols=115 Identities=23% Similarity=0.314 Sum_probs=65.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeCCH
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATEDV 103 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~d~ 103 (291)
+.+-+|.|+|.+..++||++.|||++..+.. ..++++.......++++-++............++++.+.|++.
T Consensus 1 f~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~ 74 (125)
T PF14506_consen 1 FIIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNP 74 (125)
T ss_dssp -EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSH
T ss_pred CcCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCH
Confidence 3577899999999999999999999988865 3567766555566777776544433333444789999999987
Q ss_pred HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.++ +.|.++|.++... .... .++. +-+.+|+|..|.+....
T Consensus 75 ~EI-e~LLar~~~~~~l-~kg~-~gyA-fe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 75 KEI-EALLARGAQYDRL-YKGK-NGYA-FEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHH-HHHHHC-S--SEE-EE-S-SSEE-EEEE-TT--EEEEE--S
T ss_pred HHH-HHHHhccccccee-EEcC-CceE-EEEECCCCCEEEEEEcC
Confidence 774 4455555553322 1111 2222 33689999999887553
No 173
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.88 E-value=8.2e-09 Score=76.26 Aligned_cols=121 Identities=24% Similarity=0.291 Sum_probs=72.4
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcc---eeEEEecccCC--CceeEE------EeeeecCcc-eeccC
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK---YTLAMLGYAEE--DQTTVL------ELTYNYGVT-EYTKG 220 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~l------~l~~~~~~~-~~~~~ 220 (291)
.+.|+.|.|+|++++.+||+++||+++.......... ....+...... ...... ......... ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5789999999999999999999999987655432221 11221111000 000000 000000000 01111
Q ss_pred -cceeEEEEEecc---hhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 221 -NAYAQVAISTDD---VYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 221 -~~~~h~~~~v~d---i~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
.+..|+++.+++ +....... ...|..+...+. ..+ +..+|++||||+.||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFL----DPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEee----CCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 246799999998 55555565 777888665544 323 248999999999999974
No 174
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.83 E-value=3.9e-08 Score=72.67 Aligned_cols=125 Identities=15% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCCceeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcc--cCCCCee
Q 022871 17 PKKDKRRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSY--DIGTGFG 94 (291)
Q Consensus 17 ~~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~ 94 (291)
+++.+.++.||.+.+++.+++..+++ .|||+.+.+-... ....++. +...+++.-.+......+ ..|++++
T Consensus 3 nP~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQ--G~I~~vln~ep~s~a~~~~~~HG~sv~ 75 (139)
T PF14696_consen 3 NPLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQ--GDINFVLNSEPDSFAAEFAAQHGPSVC 75 (139)
T ss_dssp -TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEE--TTEEEEEEEESTSCHHHHHHHHSSEEE
T ss_pred CCCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEe--CCEEEEEeCCCcchHHHHHHhcCCEEE
Confidence 35679999999999999888888875 5999998764322 2333443 355666654332222222 2688999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCC
Q 022871 95 HFAIATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPT 150 (291)
Q Consensus 95 ~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~ 150 (291)
.|+|.|+|.+++++++.++|++....+... +...+.-++.++|.++.|+++...
T Consensus 76 aiafrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 76 AIAFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EEEEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SS
T ss_pred EEEEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCC
Confidence 999999999999999999999977654322 334457789999999999998644
No 175
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.69 E-value=1.8e-07 Score=66.05 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=71.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeecc---CCC-Cc--ccCCCCeeEE
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYN---YGV-TS--YDIGTGFGHF 96 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~--~~~~~g~~~i 96 (291)
+.-.|.|.|+|++++.+||+. |||+.-....... ..+.+-. .+....+ +... .-. .+ -.....-.-+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~--~ni~vML-L~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIIS--DNIFVML-LEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEe--ccEEEEE-eccHHhhhhcccccccccCCceEEE
Confidence 456889999999999999987 9999754432221 2233321 1222222 1110 000 00 0112233456
Q ss_pred EEEeC---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 97 AIATE---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 97 ~~~v~---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
|+.+. ++++..++..++|.+...++.+... -+ ...|.|||||.||++.=
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf-MY-g~~fqDpDGh~wE~l~m 127 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGF-MY-GRSFQDPDGHVWEFLWM 127 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccccc-cc-ceeeeCCCCCeEEEEEe
Confidence 77774 5889999999999998766554432 22 25589999999999864
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.62 E-value=3.3e-07 Score=77.04 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD 231 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~ 231 (291)
.+..||+|.|.|+++|.+||+++|++.. . .++. ...+ + . .-..+-+... + .....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-F----sde~-a~cm-~--d--tI~vMllt~~-D----~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-W----DGDK-LFLL-G--K--TSLYLQQTKA-E----KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-C----CCCc-cccc-c--C--cEEEEEecCC-C----CCCcceEEEEeccC
Confidence 4577999999999999999999988874 1 1111 1121 1 1 1222222221 1 12335567999998
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+ .+.++.+-+++.++|++...+|..+.. .--|.|||||.||++=
T Consensus 310 S-re~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 C-EHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred C-HHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 7 444444444449999987666665433 4468999999999973
No 177
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.52 E-value=1.6e-07 Score=76.74 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=88.0
Q ss_pred CCceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcc--e-----eccCccee
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVT--E-----YTKGNAYA 224 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~--~-----~~~~~~~~ 224 (291)
.+++||.++|.|...+.+||+..|||++....+..-+...+.......+ ...+.+.....+. . ..+|.+.-
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 4689999999999999999999999997764432211111111111111 2222222222211 1 12556788
Q ss_pred EEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCC--CCceEEEEECCCCCeEEEEechhhhhh
Q 022871 225 QVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG--LNTKITSFVDPDGWKTVLVDNEDFLKE 287 (291)
Q Consensus 225 h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~--~~~~~~~~~Dp~G~~iel~~~~~~~~~ 287 (291)
-+||.|+|.+++...+ .++|+++..+|.+... +..+++.+..+.-....+++++.+.++
T Consensus 94 dvafeVeD~da~~~~~----va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEA----VANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred ceEEEecchHHHHHHH----HHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 8999999999999999 9999999999877432 234778888888788888888776654
No 178
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.51 E-value=3.4e-07 Score=76.29 Aligned_cols=101 Identities=21% Similarity=0.315 Sum_probs=73.1
Q ss_pred CceeeeEEEEEeC--CHHHHHHHHHHhcCCEEEEeeecCCC--ceeeEEEecCCCCceeEEEeeccCCCC----cc---c
Q 022871 20 DKRRFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEE--KYSNAFLGFGPEQSHFVVELTYNYGVT----SY---D 88 (291)
Q Consensus 20 ~~~~i~hv~l~v~--d~~~a~~fy~~~LG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~ 88 (291)
.+..|+|++.+|+ +++.+..||+++|+|+.+...+.++. +...--+...++ .+.+++....... .+ .
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G--~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCG--KVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCC--cEEeecccCCCchhHHHHHHHHh
Confidence 4689999999987 99999999999999999988776553 111111221222 3445544322211 12 2
Q ss_pred CCCCeeEEEEEeCCHHHHHHHHHHcCCeEecCCc
Q 022871 89 IGTGFGHFAIATEDVYKLVENIRAKGGNVTREPG 122 (291)
Q Consensus 89 ~~~g~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~ 122 (291)
.|.||+||+|.++|+-++.++|+++|++....|.
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 7889999999999999999999999999877554
No 179
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.45 E-value=2.3e-06 Score=72.07 Aligned_cols=106 Identities=24% Similarity=0.334 Sum_probs=69.2
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE 101 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~ 101 (291)
.+.-||.|.|+|++++.+||+++|++.. ... +. . +.+ ++ ... .+-+.+. .+ ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsd----e~-a-~cm--~d-tI~-vMllt~~---D~--~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDG----DK-L-FLL--GK-TSL-YLQQTKA---EK--KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCC----Cc-c-ccc--cC-cEE-EEEecCC---CC--CCcceEEEEeccC
Confidence 3456999999999999999999988874 221 11 1 122 22 221 2222222 11 1123345678876
Q ss_pred ---CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeC
Q 022871 102 ---DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQR 147 (291)
Q Consensus 102 ---d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~ 147 (291)
+++++.++..++|.+...++.+.+. . --|.|||||.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf-~---rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP-L---RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC-c---ceeECCCCCEEEEEEE
Confidence 4888999999999987666665554 2 3489999999999864
No 180
>PRK10148 hypothetical protein; Provisional
Probab=98.34 E-value=7.9e-05 Score=56.33 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=76.1
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEEEeee---c-----------------CCCceeeEEEecCCCCceeEEEeeccCCCC
Q 022871 27 AVYRVG-DLDRTIKFYTECFGMKLLRKRD---V-----------------PEEKYSNAFLGFGPEQSHFVVELTYNYGVT 85 (291)
Q Consensus 27 v~l~v~-d~~~a~~fy~~~LG~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (291)
..|..+ |.++|++||+++||.++..... . +++...++.+.+++. .+.+ ... ...
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~--~lm~--sD~-~~~ 79 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS--DIMM--SDA-IPS 79 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE--EEEE--ECC-CCC
Confidence 456665 8999999999999998865431 1 123455566666532 2222 111 111
Q ss_pred cccCCCCeeEEEEEeCCHHH---HHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCCC
Q 022871 86 SYDIGTGFGHFAIATEDVYK---LVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTP 151 (291)
Q Consensus 86 ~~~~~~g~~~i~~~v~d~~~---~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~ 151 (291)
....+ .-.++++.++|.++ ++++| +.|.++..++.+..+|.+ +..++||-|+.|.|......+
T Consensus 80 ~~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~-~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 80 GKAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHG-FGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred cCCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhc-cEEEECCCCCEEEEEecCCCC
Confidence 11111 23466777788776 55656 688999999888888765 488999999999998765443
No 181
>PRK10148 hypothetical protein; Provisional
Probab=98.30 E-value=2e-05 Score=59.55 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=70.5
Q ss_pred EeeeC-CccccHHHHHhhhCCeeeeeecc---C-----------------CcceeEEEecccCCCceeEEEeeeecCcce
Q 022871 158 MLRVG-DLGRSIKFYEKALGMKLLRTVDK---P-----------------EYKYTLAMLGYAEEDQTTVLELTYNYGVTE 216 (291)
Q Consensus 158 ~l~v~-D~~~~~~Fy~~~lG~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 216 (291)
-|.+. |.+++.+||.++||..+...... + ++...-..+..+ +..|-+....+..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~~- 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPSG- 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCCc-
Confidence 45664 89999999999999876544311 0 111111222211 1222222111111
Q ss_pred eccCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEec
Q 022871 217 YTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDN 281 (291)
Q Consensus 217 ~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~ 281 (291)
.......++++.++|.+++ +++.+.| +.|+++..++...++ +.++..++||.|+.|.|...
T Consensus 81 -~~~~~~~~l~l~~~d~ee~-~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 81 -KAHYSGFTLVLDTQDVEEG-KRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred -CCCCCeEEEEEECCCHHHH-HHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEec
Confidence 1111345788888886554 4444543 689999999999888 46899999999999999764
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.16 E-value=6.8e-05 Score=52.91 Aligned_cols=114 Identities=27% Similarity=0.378 Sum_probs=61.7
Q ss_pred eEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce-eccC-cceeEEEEEecch
Q 022871 156 QVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE-YTKG-NAYAQVAISTDDV 233 (291)
Q Consensus 156 hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~-~~~~h~~~~v~di 233 (291)
+-.|.|.|-+..++||+++|||++..... ++.+++.... ...+.|-..+.... ...| --+.++.+.|.+
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~--~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~- 73 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQK--EERLVLEESPSMRTRAVEGPKKLNRIVIKVPN- 73 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT----EEEEEEE--TTT-B--SSS-SEEEEEEEESS-
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCC--ceEEEEecCCccccccccCcceeeEEEEEcCC-
Confidence 45789999999999999999999875432 3344442222 33333322221111 1122 367899999998
Q ss_pred hhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhhh
Q 022871 234 YKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDFL 285 (291)
Q Consensus 234 ~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~~ 285 (291)
.+.++.+ .++|.++...-. +..++.+-..+|.|.+|.|...++..
T Consensus 74 ~~EIe~L----Lar~~~~~~l~k---g~~gyAfe~vSPEgd~~llhaEdd~~ 118 (125)
T PF14506_consen 74 PKEIEAL----LARGAQYDRLYK---GKNGYAFEAVSPEGDRFLLHAEDDIS 118 (125)
T ss_dssp HHHHHHH----HHC-S--SEEEE----SSSEEEEEE-TT--EEEEE--S-GG
T ss_pred HHHHHHH----HhcccccceeEE---cCCceEEEEECCCCCEEEEEEcCCHh
Confidence 5666666 677766432222 23357777889999999998876643
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.06 E-value=0.00011 Score=54.41 Aligned_cols=117 Identities=18% Similarity=0.159 Sum_probs=74.8
Q ss_pred CceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcce----eccCcceeEEEE
Q 022871 153 PLCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTE----YTKGNAYAQVAI 228 (291)
Q Consensus 153 ~~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~h~~~ 228 (291)
.+.+|.+.++|.++...+++ .|||+..-+....+ ..++ + .+ ...+.+....+... ..+|++.--++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~--v~l~--r--QG--~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD--VTLY--R--QG--DINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS--EEEE--E--ET--TEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc--eEEE--E--eC--CEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 57899999999888888885 59999876554332 2333 2 11 33444433222110 226789999999
Q ss_pred EecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechhh
Q 022871 229 STDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNEDF 284 (291)
Q Consensus 229 ~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~~ 284 (291)
.|+|..++++++ .+.|.+.+..|..... ...--++-+.|.++-|+++...
T Consensus 80 rV~Da~~A~~rA----~~~GA~~~~~~~~~~e--~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 80 RVDDAAAAYERA----VALGAEPVQEPTGPGE--LNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp EES-HHHHHHHH----HHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--SS
T ss_pred EeCCHHHHHHHH----HHcCCcCcccCCCCCc--EeeeeEEccCCCEEEEEecCCC
Confidence 999999999999 9999998777643221 3667789999999999998654
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.73 E-value=0.00018 Score=56.23 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=49.9
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcc--eeEEEecccCCCceeEEEeeeecCccee------------cc
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYK--YTLAMLGYAEEDQTTVLELTYNYGVTEY------------TK 219 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~~~~~~------------~~ 219 (291)
|+|+.+.|+|++++.++|++.|||.+.....-+..+ -.++.++ + ..|||....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~--~----~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG--D----GYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S--S----SEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC--C----ceEEEEEeCCcccccccccceechhhcC
Confidence 689999999999999999889999988655444311 2344443 2 26777664322211 13
Q ss_pred CcceeEEEEEecchhhhHHHHHHHHHHhCCe
Q 022871 220 GNAYAQVAISTDDVYKSAEVVNLVTQELGGK 250 (291)
Q Consensus 220 ~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~ 250 (291)
+.++.+++|.++|++++.+++ .+.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l----~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARL----RAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHH----HTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHH----HhcCCC
Confidence 568899999999999999999 999975
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.79 E-value=0.057 Score=38.98 Aligned_cols=99 Identities=21% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCccccHHHHHhhhCCeeeee-eccCC------cceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEecchh
Q 022871 162 GDLGRSIKFYEKALGMKLLRT-VDKPE------YKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTDDVY 234 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~di~ 234 (291)
.+.+++.+||.++||-..... ...++ .......+... +..+-..... .....+++ ..+++.++| .
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~~--~~~~~~~~-~sl~i~~~~-~ 82 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDGG--PDFPFGNN-ISLCIECDD-E 82 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEES--TS----TT-EEEEEEESS-H
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECCC--CCCCCCCc-EEEEEEcCC-H
Confidence 689999999999999432222 11111 11111111111 1222222211 12222333 668889988 5
Q ss_pred hhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 022871 235 KSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLV 279 (291)
Q Consensus 235 ~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~ 279 (291)
+.+++++++|.+.|- ++ + ++..++|..|..|.|+
T Consensus 83 ee~~~~f~~Ls~gG~---------~~-~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 83 EEIDRIFDKLSEGGQ---------WF-S-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHHTTTE---------TC-C-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHHcCCC---------cc-c-eeEEEEeCCCCEEEeC
Confidence 666777777676554 22 3 8899999999999885
No 186
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.35 E-value=0.21 Score=36.03 Aligned_cols=101 Identities=20% Similarity=0.425 Sum_probs=54.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEE-eeecCC------CceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEE
Q 022871 26 HAVYRVGDLDRTIKFYTECFGMKLLR-KRDVPE------EKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 26 hv~l~v~d~~~a~~fy~~~LG~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 98 (291)
|+.+. .+-++|.+||.++||-..+. ....++ +...++.+.+++. .+.. ... . ..+..+++ .++++
T Consensus 6 yL~F~-g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~--~lm~--~D~-~-~~~~~~~~-~sl~i 77 (116)
T PF06983_consen 6 YLWFN-GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ--KLMA--SDG-G-PDFPFGNN-ISLCI 77 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE--EEEE--EEE-S-TS----TT-EEEEE
T ss_pred EEEeC-CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe--EEEE--ECC-C-CCCCCCCc-EEEEE
Confidence 44443 68999999999999854333 233222 2334444555322 1211 111 1 22233334 46777
Q ss_pred EeCC---HHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEE
Q 022871 99 ATED---VYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELI 145 (291)
Q Consensus 99 ~v~d---~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~ 145 (291)
..+| ++.++++|.+.|- + .. .+..+.|.-|..|.|+
T Consensus 78 ~~~~~ee~~~~f~~Ls~gG~---------~-~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 78 ECDDEEEIDRIFDKLSEGGQ---------W-FS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EESSHHHHHHHHHHHHTTTE---------T-CC-EEEEEE-TTS-EEEEE
T ss_pred EcCCHHHHHHHHHHHHcCCC---------c-cc-eeEEEEeCCCCEEEeC
Confidence 8776 4556778888774 2 23 4678999999998875
No 187
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.25 E-value=0.0069 Score=41.90 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=39.8
Q ss_pred ceeEEeeeCCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec--
Q 022871 154 LCQVMLRVGDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD-- 231 (291)
Q Consensus 154 ~~hv~l~v~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~-- 231 (291)
+..+.|+|+| +++..||.++||-... ..+.+.... +..+.+ .+ ..-=++-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~----G~DL~~-~~------~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQ----GPDLTI-EN------NETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGSS--T------TSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeecc----CCcccc-CC------CcEEeeEEEEEEecCc
Confidence 4578999999 8899999998873211 122222211 111111 00 00015667888998
Q ss_pred -chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022871 232 -DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 232 -di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
|+.++.+++ .+ ..+..+ + ..+++.++||++..|+|
T Consensus 65 ~Dl~~L~~~l----e~--~~~fid-K-----k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHL----EE--QEFFID-K-----KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHT----TT--S-EE---T-----T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHh----cc--cceEec-C-----CceEEEEECCcceEEEe
Confidence 445555555 55 333222 2 24899999999999987
No 188
>PF15067 FAM124: FAM124 family
Probab=96.14 E-value=0.076 Score=42.47 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=61.5
Q ss_pred eeeEEEEEeC--CHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEec-CCCCceeEEEeecc-CCCCcccCCCCeeEEEE
Q 022871 23 RFLHAVYRVG--DLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF-GPEQSHFVVELTYN-YGVTSYDIGTGFGHFAI 98 (291)
Q Consensus 23 ~i~hv~l~v~--d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~ 98 (291)
-+-.++|.|+ |.+.+.+||+-+|+-+....... .+++.+ .+.+..+.+.+..- .+..+. ...-.-+.|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~------FC~F~lys~~~~~iQlsLK~lp~~~~p~--p~esavLqF 199 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKED------FCFFTLYSQPGLDIQLSLKQLPPGMSPE--PTESAVLQF 199 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCC------cEEEEEecCCCeEEEEEeccCCCCCCcc--cccceEEEE
Confidence 4567889999 99999999999999988655431 344433 23333333443221 111111 112245679
Q ss_pred EeCCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEE
Q 022871 99 ATEDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 99 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
.|.|+..+...|-.--.. +..+. .-..|||||.|-+
T Consensus 200 ~V~~igqLvpLLPnpc~P-------IS~~r---WqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPCSP-------ISETR---WQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCccc-------ccCCc---ceeeCCCCCEecc
Confidence 999998876654433211 11122 3479999998843
No 189
>PF15067 FAM124: FAM124 family
Probab=93.66 E-value=1.5 Score=35.26 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=69.0
Q ss_pred EEEECCCCCEEEEEeCCCCCCCceeEEeeeC--CccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEee
Q 022871 132 AFVKDPDGYIFELIQRGPTPEPLCQVMLRVG--DLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELT 209 (291)
Q Consensus 132 ~~~~dp~G~~iel~~~~~~~~~~~hv~l~v~--D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 209 (291)
+|-.+|+-=+|.+- ..--...+..++|.|+ |.+.+.+||+-+|+=+.... ..+. -++.+- ... +..+++.
T Consensus 108 fysl~~~~PlWavr-~VH~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~--k~~F--C~F~ly-s~~--~~~iQls 179 (236)
T PF15067_consen 108 FYSLDPGMPLWAVR-QVHYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQ--KEDF--CFFTLY-SQP--GLDIQLS 179 (236)
T ss_pred ceecCCCCceeEEe-eeeccccEEEEEEEecCCCHHHHHHHHHHHhccCccee--eCCc--EEEEEe-cCC--CeEEEEE
Confidence 34445533334333 2234566788999998 99999999999999765332 2222 222221 122 3444443
Q ss_pred eecCcc-eeccCcceeEEEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 022871 210 YNYGVT-EYTKGNAYAQVAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVL 278 (291)
Q Consensus 210 ~~~~~~-~~~~~~~~~h~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel 278 (291)
-..-+. ..+......-+.|.|.|+-+++.-+ =+.. .+..+ ...-..|+|||.|-|
T Consensus 180 LK~lp~~~~p~p~esavLqF~V~~igqLvpLL-----Pnpc---~PIS~------~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 180 LKQLPPGMSPEPTESAVLQFRVEDIGQLVPLL-----PNPC---SPISE------TRWQTEDYDGNKILL 235 (236)
T ss_pred eccCCCCCCcccccceEEEEEecchhhhcccC-----CCCc---ccccC------CcceeeCCCCCEecc
Confidence 321111 1122224467899999988877766 1121 11111 224579999999843
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=93.05 E-value=0.41 Score=33.27 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=39.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecCCCCceeEEEeeccCCCCcccCCCCeeEEEEEeC--
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFGPEQSHFVVELTYNYGVTSYDIGTGFGHFAIATE-- 101 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~v~-- 101 (291)
+..+.|+|+| +++..||.++||-.. + ..+.+.. +.+. .+ ..+....-++..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~------~---~~l~f~e-a~G~-DL---------~~~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQL------P---FFLTFQE-AQGP-DL---------TIENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHH------T---TTEEEEE----C-CG---------SS-TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCC------C---ceEEEee-ccCC-cc---------ccCCCcEEeeEEEEEEecCc
Confidence 5679999999 889999999886211 0 0011111 0000 00 001112235667778887
Q ss_pred -CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEE
Q 022871 102 -DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFEL 144 (291)
Q Consensus 102 -d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel 144 (291)
|+.++.+++.+.++ --+ ....++.+.||.|.-+-+
T Consensus 65 ~Dl~~L~~~le~~~~--fid------Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--FID------KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-E--E--------TT-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccce--Eec------CCceEEEEECCcceEEEe
Confidence 68888899888443 111 122357789999976644
No 191
>PRK11700 hypothetical protein; Provisional
Probab=84.85 E-value=14 Score=28.88 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=44.9
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEec------CCCCceeEEEeeccCCCCcccCCCCeeE
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------GPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
..++||.+.|++.+.|.+|-+..+.+--.-....-.| ..++.+.+ ++... -.++++.+.. ....-.|+-|
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~ING-RPI~l~~L~qPl~~~~w~I-~cvELP~P~~--k~Yp~eGWEH 113 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIING-RPICLFELDQPLQVGHWSI-DCVELPYPGE--KRYPHEGWEH 113 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCC-eeEEEEEcCCCceeCCcEE-EEEEeCCCCC--CCCCCCCceE
Confidence 4579999999999999999988775433322211122 23444433 22111 1245554432 2234458999
Q ss_pred EEEEeCC
Q 022871 96 FAIATED 102 (291)
Q Consensus 96 i~~~v~d 102 (291)
|-+.++.
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9988863
No 192
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.44 E-value=18 Score=26.95 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=32.1
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEe
Q 022871 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVD 280 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~ 280 (291)
+-+.++| .+..+++++.|...|.+. ....+++|-.|..|.|+-
T Consensus 81 ~~v~~~~-q~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 81 FQVACDD-QEEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVP 123 (151)
T ss_pred EEEEcCC-HHHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcH
Confidence 4445566 777788878778888621 256789999999999973
No 193
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=80.99 E-value=25 Score=27.57 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=43.3
Q ss_pred eeeeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEec------CCCCceeEEEeeccCCCCcccCCCCeeE
Q 022871 22 RRFLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------GPEQSHFVVELTYNYGVTSYDIGTGFGH 95 (291)
Q Consensus 22 ~~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 95 (291)
-.++||+++|++.+.+.++-+..+.+-..-....-.|+ .++.+.+ ++... -.++++.+.. ....-.|+-|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGR-PI~l~~L~qPL~~~~~~I-~~vELP~P~~--K~Yp~eGWEH 108 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGR-PICLFKLNQPLQFGGWSI-DCVELPYPKD--KRYPQEGWEH 108 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTE-EEEEEEEEEEEEETTEEE-EEEEEE---S--S--SS-EEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCe-eEEEEEcCCchhcCCeeE-EEEEeCCCCC--CCCCCCCceE
Confidence 46899999999999999999998866544332222221 2333322 22221 2355654433 2224459999
Q ss_pred EEEEeCC-HHHHHHHH
Q 022871 96 FAIATED-VYKLVENI 110 (291)
Q Consensus 96 i~~~v~d-~~~~~~~l 110 (291)
|-|-++. ..+..+++
T Consensus 109 IE~Vip~~~~~~~~~~ 124 (185)
T PF06185_consen 109 IEFVIPSDAQTLLEQA 124 (185)
T ss_dssp EEEE--S-GGGHHHHH
T ss_pred EEEEecCCHHHHHHHH
Confidence 9999863 33344443
No 194
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=74.83 E-value=33 Score=25.73 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=43.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEec------CCCCceeEEEeeccCCCCcccCCCCeeEEE
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGF------GPEQSHFVVELTYNYGVTSYDIGTGFGHFA 97 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 97 (291)
++||++.|++.+.+.++-+.++.+--.-....-.| ..++.+.+ ++... -.++++.+.. ....-.|+-||-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~ING-RPI~l~~L~qPl~~~~~~I-~cvELP~P~~--k~Yp~eGWEHIE 77 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEING-RPIALIKLEKPLQFAGWSI-SIVELPFPKD--KKYPQEGWEHIE 77 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCC-eeEEEEEcCCCceeCCcEE-EEEEeCCCCC--CCCCCCCceEEE
Confidence 58999999999999999988775533322211122 23344433 22111 1245554422 222445899999
Q ss_pred EEeCC
Q 022871 98 IATED 102 (291)
Q Consensus 98 ~~v~d 102 (291)
+-++.
T Consensus 78 ~Vlp~ 82 (149)
T cd07268 78 IVIPS 82 (149)
T ss_pred EEecC
Confidence 88863
No 195
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=65.33 E-value=24 Score=23.46 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCeEecCCccc-CCCceEEEEEECCCCCEEEEEeCCC
Q 022871 102 DVYKLVENIRAKGGNVTREPGPL-KGGTTHIAFVKDPDGYIFELIQRGP 149 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~~dp~G~~iel~~~~~ 149 (291)
+.+++.+++.+.|+.+..- +. .+|.+. +...|.+|..+++.-...
T Consensus 30 ~~~~~~~~l~~~G~~v~~v--e~~~~g~ye-v~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV--EFDDDGCYE-VEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEEE--EEcCCCEEE-EEEEECCCCEEEEEEcCC
Confidence 6888999999999966543 34 344444 668999999999987753
No 196
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=61.18 E-value=20 Score=23.82 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=31.8
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
++.++.+.+ ++.|+++..--.... +.+.+...|.+|..+|+.-+.
T Consensus 30 ~~~~~~~~l----~~~G~~v~~ve~~~~--g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKL----EAQGYQVREVEFDDD--GCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHH----HhcCCceEEEEEcCC--CEEEEEEEECCCCEEEEEEcC
Confidence 567777787 999996543332122 247788999999999997544
No 197
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.09 E-value=21 Score=21.87 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCHHHHHHHHHHcCCeE
Q 022871 92 GFGHFAIATEDVYKLVENIRAKGGNV 117 (291)
Q Consensus 92 g~~~i~~~v~d~~~~~~~l~~~G~~~ 117 (291)
+...+.|.+++.+.+.+.|+++|+.+
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45667899999999999999999875
No 198
>PHA02754 hypothetical protein; Provisional
Probab=60.20 E-value=19 Score=22.01 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=33.3
Q ss_pred cchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEech
Q 022871 231 DDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNE 282 (291)
Q Consensus 231 ~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~ 282 (291)
+|..++++.+++.|.++|+-+..-..-... |.-..+.-.||..+|+.+.+
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~~S--GdkIVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAITTS--GDKIVVITADAIKIELSETE 63 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEEec--CCEEEEEEcceEEEEEEeee
Confidence 467788888888889999876543222111 23455556788899887754
No 199
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.04 E-value=25 Score=28.23 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=26.5
Q ss_pred CCccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCce
Q 022871 162 GDLGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQT 203 (291)
Q Consensus 162 ~D~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (291)
.|+.++..||.+.||+..... .+....++|....+.+..
T Consensus 145 a~~~e~a~wy~dyLGleie~~---hgevikfiFTnIdpkdp~ 183 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG---HGEVIKFIFTNIDPKDPT 183 (246)
T ss_pred hccHHHHHHHHHhcCceeeec---cCceEEEEEeccCCCCCc
Confidence 577888999999999986532 333456666666555443
No 200
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=53.07 E-value=63 Score=23.21 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.4
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
|....++++.+.+.+.++..|+.+ .+|-..|..-.++...+.|+|+
T Consensus 26 ~d~~~Ld~~~~~Ii~~ak~~g~~v-~GPipLPtK~~~~tvlrSPhg~ 71 (115)
T PTZ00039 26 KNLKSIEKVCADIITGAKEKNLKV-TGPVRMPVKTLRITTRKSPCGE 71 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEe-ECCccCCceeEEEEeeeCCCCC
Confidence 444568888888877778888886 5666777644466677899975
No 201
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=52.25 E-value=33 Score=24.06 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=36.0
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
-+|....+|.+.+.+.+-.+..|+.+ .+|...|..-..+-.++.|+|+
T Consensus 11 ~s~d~~~LD~~~~~Ive~akrtg~~v-~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 11 KSFDHRLLDQVCREIVETAKRTGADV-KGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhCCee-eCCccCCCceEEEEEEeCCCCC
Confidence 34556678888888877778889986 6777777655567778999886
No 202
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=48.11 E-value=30 Score=29.58 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=32.0
Q ss_pred eEEEEE--e---CCHHHHHHHHHHhcCCEEEEeeecCCCceeeEEEecC
Q 022871 25 LHAVYR--V---GDLDRTIKFYTECFGMKLLRKRDVPEEKYSNAFLGFG 68 (291)
Q Consensus 25 ~hv~l~--v---~d~~~a~~fy~~~LG~~~~~~~~~~~~~~~~~~~~~~ 68 (291)
+|++|. . ..++...+++.. ||+++....+.+..+....++...
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p~ 83 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRPP 83 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEET
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecCC
Confidence 799999 3 367888889976 999999887776665555555443
No 203
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.65 E-value=49 Score=20.77 Aligned_cols=29 Identities=7% Similarity=0.026 Sum_probs=20.0
Q ss_pred ceeEEEEEec--chhhhHHHHHHHHHHhCCeeecC
Q 022871 222 AYAQVAISTD--DVYKSAEVVNLVTQELGGKITRQ 254 (291)
Q Consensus 222 ~~~h~~~~v~--di~~~~~~l~~~~~~~G~~~~~~ 254 (291)
+...+.|.++ +.+++.+.| +++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L----~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDL----RRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHH----HHCCCeeeCC
Confidence 3444556554 666777777 9999998754
No 204
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=42.59 E-value=54 Score=22.81 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=32.9
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
|....++.+.+.+.+.++..|+.+ .+|-..|..-.++...+.|.|+
T Consensus 10 ~d~~~Ld~~~~~I~~~ak~~g~~~-~GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 10 TNVRSLEKVCAQIKRIAEKTGVRM-SGPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEE-ECCccCCcceEEEEeeeCCCCC
Confidence 334457788888877778889886 5777777654566778999864
No 205
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=40.92 E-value=54 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=22.6
Q ss_pred cCcceeEEEEEe------cchhhhHHHHHHHHHHhCCeee
Q 022871 219 KGNAYAQVAIST------DDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 219 ~~~~~~h~~~~v------~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.|..++|++..| .||+++.+.+ +++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l----~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFL----KERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHH----HHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHH----HHcCCCcc
Confidence 677889999999 9999999999 99999876
No 206
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=39.28 E-value=1.4e+02 Score=21.08 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHcCCeEecCCcccCCCceE-EEEEECCCCCEEEEEeCCCCCCCceeEEeeeCCccccHHHHH
Q 022871 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTH-IAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKFYE 172 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~-~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v~D~~~~~~Fy~ 172 (291)
.+.+++.++|+++++-.... +..+++... |++..+..|..+-+--.-.....-..+.+-+.+.+.+..|+.
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~-~~~~~~~~~~y~s~~~~~~~~fL~El~~~~~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIAS-GKVDNGQKFFYFSAKTTNGIWFLVELTIDPGSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEE-EECTT-EEEEEEEEEBTTS-EEEEEEEE-TT-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEec-CCCCccccEEEEEEEcCCCcEEEEEEEEcCCCccEEEEEecCCHHHHHHHHH
Confidence 57889999999999986643 233332332 223477776554222222233446688899999877776664
No 207
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.10 E-value=1.1e+02 Score=19.79 Aligned_cols=50 Identities=18% Similarity=-0.032 Sum_probs=30.8
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCC-CceEEEEECCCCCeE
Q 022871 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGL-NTKITSFVDPDGWKT 276 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~-~~~~~~~~Dp~G~~i 276 (291)
-+...|-..++.++...+.+.|+.+...--.+.+. -...||++|.+|..+
T Consensus 5 ev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 5 KVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 34445544445555555589999876553333221 135699999999987
No 208
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=36.90 E-value=20 Score=20.71 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=18.5
Q ss_pred CCceeEEeeeCCccccHHHHHhhh
Q 022871 152 EPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 152 ~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
++++..++-+.+.++..+||+..|
T Consensus 10 gp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CccccCCCccccccchhHHHHHHH
Confidence 445556667788899999999866
No 209
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=35.61 E-value=70 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCC
Q 022871 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRG 148 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~ 148 (291)
.|+.++..+|...|+. ..+.|++|++.+|-...
T Consensus 21 ~d~~~L~~~lt~~GF~---------------~tl~D~~G~~HeLgtnt 53 (96)
T PF11080_consen 21 TDINELNNHLTRAGFS---------------TTLTDEDGNPHELGTNT 53 (96)
T ss_pred HHHHHHHHHHHhcCce---------------eEEecCCCCEeecCCCe
Confidence 4678888999999864 44799999999876553
No 210
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=34.84 E-value=39 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=21.9
Q ss_pred eEEEEEecchhhhHHHHHHHHHHhCCeee
Q 022871 224 AQVAISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 224 ~h~~~~v~di~~~~~~l~~~~~~~G~~~~ 252 (291)
.-+-+.|+|++++.+.| +++|+.++
T Consensus 110 Alli~r~ed~d~~~~aL----ed~gi~~~ 134 (142)
T COG4747 110 ALLIVRVEDIDRAIKAL----EDAGIKLI 134 (142)
T ss_pred EEEEEEhhHHHHHHHHH----HHcCCeec
Confidence 35778999999999999 99999875
No 211
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=34.33 E-value=88 Score=21.90 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=32.5
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
|....++.+.+.+.+.++..|+.+ .+|-..|..-.++...+.|.|+
T Consensus 11 ~d~~~Ld~~~~~I~~~~k~~g~~~-~GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 11 TNPEDLDEVCDQIKEIAEKTGVDM-SGPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeE-ECCCcCCceeEEEEeeeCCCCC
Confidence 334457778888877778889876 5666666644566778999865
No 212
>CHL00135 rps10 ribosomal protein S10; Validated
Probab=33.36 E-value=82 Score=22.02 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=33.5
Q ss_pred EEEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 227 AISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 227 ~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
+|....++.+.+.+.+.++..|+.+ .+|-..|....++..++.|.++
T Consensus 15 S~d~~~L~~~~~~I~~~~k~~~~~~-~GpipLPtk~~~~TvlrSPhv~ 61 (101)
T CHL00135 15 SFNHELLNSSCKKIIDTASRTNATA-VGPIPLPTKRRIYCVLRSPHVD 61 (101)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCeE-eCCcCCCcEEEEEEEecCCCCC
Confidence 4455667888888877778888876 5666666644567778999874
No 213
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.28 E-value=92 Score=20.65 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=21.7
Q ss_pred eeEEEEEeCC----HHHHHHHHHHcCCeEec
Q 022871 93 FGHFAIATED----VYKLVENIRAKGGNVTR 119 (291)
Q Consensus 93 ~~~i~~~v~d----~~~~~~~l~~~G~~~~~ 119 (291)
-..+.++++| ++.+.+.|+++|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3456688888 88999999999998653
No 214
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=32.62 E-value=1.1e+02 Score=20.33 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=16.4
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEe
Q 022871 29 YRVGDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 29 l~v~d~~~a~~fy~~~LG~~~~~~ 52 (291)
+...+=..+.++|++ |||+....
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344577789999998 99998754
No 215
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.33 E-value=38 Score=27.30 Aligned_cols=20 Identities=15% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHhcCCEEEE
Q 022871 32 GDLDRTIKFYTECFGMKLLR 51 (291)
Q Consensus 32 ~d~~~a~~fy~~~LG~~~~~ 51 (291)
.|..+++.||.+.||+++..
T Consensus 145 a~~~e~a~wy~dyLGleie~ 164 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEA 164 (246)
T ss_pred hccHHHHHHHHHhcCceeee
Confidence 36778899999999999864
No 216
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=30.89 E-value=1.5e+02 Score=21.59 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCCceeEEeeeCCccccHHH
Q 022871 104 YKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGPTPEPLCQVMLRVGDLGRSIKF 170 (291)
Q Consensus 104 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~~~~~~~hv~l~v~D~~~~~~F 170 (291)
.++.+.|+..|+.+.+.......... -.-..++.|..+..+-..-....+..|.|.+...+-++.|
T Consensus 39 ~aL~~~LR~~GYaV~e~~~~~~~~~~-~~~~~~~~g~~L~Yvvd~~~~~~lyRvt~~~~~~~lsR~Y 104 (121)
T PF07283_consen 39 QALENALRAKGYAVIEDDPPDNSANA-SAAAEAPKGVPLRYVVDQFDGQNLYRVTLNVGSQSLSRAY 104 (121)
T ss_pred HHHHHHHHhcCcEEEecCCccccccc-ccccccCCCeeEEEEEEcCCCceEEEEEEEECCEEEEEEE
Confidence 46788999999998765322211110 0122355666665555555556677777777776665544
No 217
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.83 E-value=1.2e+02 Score=23.44 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC-----CCCCceeEEeeeCCccccHHHHHhhh
Q 022871 101 EDVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP-----TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 101 ~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~-----~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
+..+++.+++.+.-..-..+.+-.-.|.. ++.+.++||..+.+.-... +++--++..+..++-=++.+++++-=
T Consensus 78 pk~del~akF~~EH~H~d~EvRy~vaG~G-iF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~ 156 (181)
T COG1791 78 PKLDELRAKFLQEHLHTDDEVRYFVAGEG-IFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE 156 (181)
T ss_pred ccHHHHHHHHHHHhccCCceEEEEEecce-EEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence 34666666655543322211111123444 4789999999888876654 34556677888888888888888777
Q ss_pred CCeee
Q 022871 176 GMKLL 180 (291)
Q Consensus 176 G~~~~ 180 (291)
||...
T Consensus 157 gWVa~ 161 (181)
T COG1791 157 GWVAI 161 (181)
T ss_pred Cceee
Confidence 77643
No 218
>PTZ00330 acetyltransferase; Provisional
Probab=29.42 E-value=80 Score=22.96 Aligned_cols=27 Identities=11% Similarity=0.427 Sum_probs=19.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEe
Q 022871 23 RFLHAVYRVGDLDRTIKFYTECFGMKLLRK 52 (291)
Q Consensus 23 ~i~hv~l~v~d~~~a~~fy~~~LG~~~~~~ 52 (291)
++..+.+.++ +.+.+||++ +||+....
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 3445566654 579999987 99997654
No 219
>PRK00969 hypothetical protein; Provisional
Probab=29.13 E-value=1.1e+02 Score=28.16 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC------CCCCceeEEeeeCCccccHHHHHhhh
Q 022871 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~------~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
++.++...|.+.|+....+....++ ....-.+|.- -++++.... +...+..|.|.-.++.++..|||++.
T Consensus 325 t~~eA~~~~~~~gIel~~eg~~~dd---aVVV~Q~P~~-TldIL~~~kV~~~~i~~~~vi~IeLydd~AP~s~~yFR~~t 400 (508)
T PRK00969 325 TLKEAEELLEKLGIELEKEGYDGDD---AVVVEQTPET-TLDILKEKKVKTKGIPKDKLIEIELYDDKAPRTVWYFRKVT 400 (508)
T ss_pred CHHHHHHHHHhCCcEEEecCCCCCC---cEEEecCCch-HHHHhhcCcEEEEeeCHHHEEEEEEcCcCCchHHHHHHHhc
Confidence 5778999999999987754222222 1122355533 233333321 34578899999999999999999999
Q ss_pred CCeee
Q 022871 176 GMKLL 180 (291)
Q Consensus 176 G~~~~ 180 (291)
|+...
T Consensus 401 GL~~~ 405 (508)
T PRK00969 401 GLKTK 405 (508)
T ss_pred CCccc
Confidence 98743
No 220
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.73 E-value=1.7e+02 Score=19.11 Aligned_cols=52 Identities=13% Similarity=-0.017 Sum_probs=31.7
Q ss_pred EEEEecchhhhHHHHHHHHHHhCCeeecCCcccCC-CCceEEEEECCCCCeEE
Q 022871 226 VAISTDDVYKSAEVVNLVTQELGGKITRQPGSIPG-LNTKITSFVDPDGWKTV 277 (291)
Q Consensus 226 ~~~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~-~~~~~~~~~Dp~G~~ie 277 (291)
+.+.+.|-..++-.+-..|.+.|+.+...--.+.+ .....||++|.+|..+.
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 34455564444444444448899987655433322 11256999999999874
No 221
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=27.43 E-value=1.2e+02 Score=18.50 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=19.9
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCCeEEEEechh
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGWKTVLVDNED 283 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~~iel~~~~~ 283 (291)
++++...+- ...|-.+..... ....-..+|||.++.|.+...
T Consensus 5 ~ls~~ea~~----l~~Gr~l~~~~~------~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 5 ELSAEEARD----LRHGRRLPAAGP------PGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp E--HHHHHH----HHTT---B-----------S-EEEE-TTS-EEEEEEEET
T ss_pred ECCHHHHHH----HhCCCccCCCCC------CceEEEECCCCcEEEEEEccC
Confidence 444555555 678876543311 123557899999999997543
No 222
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=26.87 E-value=3e+02 Score=21.21 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=69.8
Q ss_pred EEeCCHHHHHHHHHHcCCeEecCCcc------cCCC----ceEEEEEECCCCCEEEEEeCCC-CCC---CceeEEeeeCC
Q 022871 98 IATEDVYKLVENIRAKGGNVTREPGP------LKGG----TTHIAFVKDPDGYIFELIQRGP-TPE---PLCQVMLRVGD 163 (291)
Q Consensus 98 ~~v~d~~~~~~~l~~~G~~~~~~~~~------~~~g----~~~~~~~~dp~G~~iel~~~~~-~~~---~~~hv~l~v~D 163 (291)
+.+.|.+.+.++|.+.|+........ .+++ ....+.++.-+|.. .+....+ ... .-.-+.+.|.|
T Consensus 8 ~~v~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~-~lT~Kgp~~~~~~~~~~E~e~~v~d 86 (174)
T TIGR00318 8 AKIPDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEK-FVTYKGPKIDNESKTRKEIEFKIED 86 (174)
T ss_pred EEcCCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcE-EEEEeCCccCCcceEEEEEEEEECC
Confidence 56789999999999999764432110 1110 00123333333322 1111111 111 11236678899
Q ss_pred ccccHHHHHhhhCCeeeeeeccCCcceeEEEecccCCCceeEEEeeeecCcceeccCcceeEEEEEec---chhhhHHHH
Q 022871 164 LGRSIKFYEKALGMKLLRTVDKPEYKYTLAMLGYAEEDQTTVLELTYNYGVTEYTKGNAYAQVAISTD---DVYKSAEVV 240 (291)
Q Consensus 164 ~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~~~v~---di~~~~~~l 240 (291)
.++....+. .||+++.....-. ...+.++ +..+.+.. .+. -| .+.-|-..++ ++.++.+.+
T Consensus 87 ~~~~~~iL~-~LG~~~~~~v~K~---R~~~~l~------~~~i~lD~-v~~----lG-~FvEIE~~~~~~~~~~~~~~~i 150 (174)
T TIGR00318 87 IENALQILK-KLGFKKVYEVIKK---RRIYQTN------ELNVSIDD-VEG----LG-FFLEIEKIINNINDKDLALEEI 150 (174)
T ss_pred HHHHHHHHH-HCCCeEEEEEEEE---EEEEEEC------CEEEEEEc-cCC----Cc-cEEEEEEecCCccchHHHHHHH
Confidence 999999997 5999974332210 1222222 23444431 110 12 3444555554 456777788
Q ss_pred HHHHHHhCC
Q 022871 241 NLVTQELGG 249 (291)
Q Consensus 241 ~~~~~~~G~ 249 (291)
...+...|+
T Consensus 151 ~~~~~~LGl 159 (174)
T TIGR00318 151 FEIINQLGI 159 (174)
T ss_pred HHHHHHcCC
Confidence 777788887
No 223
>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed
Probab=25.94 E-value=1.3e+02 Score=21.02 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=31.7
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
+....++.....+.+.+...|+.+ .+|...|....++..++.|.++
T Consensus 13 ~d~~~L~~~~~~i~~~a~~~~i~v-~GpipLPtk~~r~tvlrSPhv~ 58 (102)
T PRK00596 13 FDHRLLDQSAKKIVETAKRTGAQV-RGPIPLPTKKERFTVLRSPHVN 58 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeE-ECCcCCCcEEEEEEEeeCCCCC
Confidence 334456777777766667789886 5666666644566778999886
No 224
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.33 E-value=1.4e+02 Score=18.42 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.2
Q ss_pred EEEEeCCHHHHHHHHHHcCCeEe
Q 022871 96 FAIATEDVYKLVENIRAKGGNVT 118 (291)
Q Consensus 96 i~~~v~d~~~~~~~l~~~G~~~~ 118 (291)
+-+.++|.+.+.+.|+++|+++.
T Consensus 43 ~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 43 LRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEECCHHHHHHHHHHCCCEEE
Confidence 34566888899999999998753
No 225
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle. This model describes bacterial 30S ribosomal protein S10. In species that have a transcription antitermination complex, or N utilization substance, with NusA, NusB, NusG, and NusE, this ribosomal protein is responsible for NusE activity. Included in the family are one member each from Saccharomyces cerevisiae and Schizosaccharomyces pombe. These proteins lack an N-terminal mitochondrial transit peptide but contain additional sequence C-terminal to the ribosomal S10 protein region.
Probab=25.25 E-value=1.2e+02 Score=21.03 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=32.0
Q ss_pred EEecchhhhHHHHHHHHHHhCCeeecCCcccCCCCceEEEEECCCCC
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKITRQPGSIPGLNTKITSFVDPDGW 274 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~~~p~~~~~~~~~~~~~~Dp~G~ 274 (291)
+....++...+.+...+...|+.+ .+|...|...-++..++.|.++
T Consensus 10 ~d~~~L~~~~~~i~~~a~~~gi~~-~gpi~LPtk~~~~tvlrSPhv~ 55 (99)
T TIGR01049 10 YDHRLLDQSTKKIVETAKRTGAQV-KGPIPLPTKKERYTVLRSPHVN 55 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCce-ecccCCCCEEEEEEEeeCCCCC
Confidence 334557777777766668889887 4666666644566778999886
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.25 E-value=60 Score=17.32 Aligned_cols=18 Identities=22% Similarity=0.792 Sum_probs=13.6
Q ss_pred EeCCHHHHHHHHHHhcCC
Q 022871 30 RVGDLDRTIKFYTECFGM 47 (291)
Q Consensus 30 ~v~d~~~a~~fy~~~LG~ 47 (291)
...|.++|+++|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 356899999999997743
No 227
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.46 E-value=1.3e+02 Score=19.66 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=20.6
Q ss_pred EEecchhhhHHHHHHHHHHhCCeee
Q 022871 228 ISTDDVYKSAEVVNLVTQELGGKIT 252 (291)
Q Consensus 228 ~~v~di~~~~~~l~~~~~~~G~~~~ 252 (291)
-..+|++++++++.+++++.|..-+
T Consensus 22 ~~~~d~d~Al~eM~e~A~~lGAnAV 46 (74)
T TIGR03884 22 TESDNVDEIVENLREKVKAKGGMGL 46 (74)
T ss_pred EecCCHHHHHHHHHHHHHHcCCCEE
Confidence 3457999999999999999998643
No 228
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=24.04 E-value=1e+02 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=21.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEE
Q 022871 24 FLHAVYRVGDLDRTIKFYTECFGMKLL 50 (291)
Q Consensus 24 i~hv~l~v~d~~~a~~fy~~~LG~~~~ 50 (291)
-+|+.+...|..+.++...++||+++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 589999999999999999999999874
No 229
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=23.66 E-value=2.6e+02 Score=21.42 Aligned_cols=54 Identities=9% Similarity=-0.011 Sum_probs=36.4
Q ss_pred chhhhHHHHHHHHHHhCCeeecCCccc--C-CCCceEEEEEC-CCCCeEEEEechhhh
Q 022871 232 DVYKSAEVVNLVTQELGGKITRQPGSI--P-GLNTKITSFVD-PDGWKTVLVDNEDFL 285 (291)
Q Consensus 232 di~~~~~~l~~~~~~~G~~~~~~p~~~--~-~~~~~~~~~~D-p~G~~iel~~~~~~~ 285 (291)
++++++..+..+|.+.|+.+.--.... + .....-..+.| ++|..+.|+|+-...
T Consensus 11 ~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~g 68 (159)
T PF10649_consen 11 DIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPG 68 (159)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCC
Confidence 577888888888899999865443332 1 11123466777 789999999975443
No 230
>PF05271 Tobravirus_2B: Tobravirus 2B protein; InterPro: IPR007935 This family consists of several tobravirus 2B proteins. It is known that the 2B protein is required for transmission by both Paratrichodorus pachydermus and Paratrichodorus anemones nematodes []. Transmission of the tobraviruses Tobacco rattle virus by trichodorid vector nematodes requires the viral coat protein (CP) and the 2B protein, a nonstructural protein encoded by RNA2, the smaller of the two viral genomic RNAs. It is hypothesized that the 2B protein functions by interacting with a small, flexible domain located at the C terminus of the CP, forming a bridge between the virus particle and the internal surface of the vector nematode feeding apparatus [].; GO: 0019089 transmission of virus
Probab=23.65 E-value=46 Score=23.00 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=22.3
Q ss_pred CCCCCCceeeeEEEEEeCCHHHHHHHHHHhcCC
Q 022871 15 EWPKKDKRRFLHAVYRVGDLDRTIKFYTECFGM 47 (291)
Q Consensus 15 ~~~~~~~~~i~hv~l~v~d~~~a~~fy~~~LG~ 47 (291)
.+-+|+|+...++-|.|.+-+ ..||++ ||=
T Consensus 57 nR~PMCINhkG~vyirV~~~~--d~yYQK-fGe 86 (116)
T PF05271_consen 57 NRLPMCINHKGWVYIRVKDGE--DVYYQK-FGE 86 (116)
T ss_pred CCcceEEcccceEEEEeccCc--cchhhh-ccc
Confidence 456778899999999999544 458877 654
No 231
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=22.98 E-value=1.9e+02 Score=26.62 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcCCeEecCCcccCCCceEEEEEECCCCCEEEEEeCCC------CCCCceeEEeeeCCccccHHHHHhhh
Q 022871 102 DVYKLVENIRAKGGNVTREPGPLKGGTTHIAFVKDPDGYIFELIQRGP------TPEPLCQVMLRVGDLGRSIKFYEKAL 175 (291)
Q Consensus 102 d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~dp~G~~iel~~~~~------~~~~~~hv~l~v~D~~~~~~Fy~~~l 175 (291)
++.++...|.+.|+....+....++ ....-.+|.- -++++.... +...+..+.|.-.+..++..|||++.
T Consensus 322 t~~eA~~~~~~~gIe~~~dG~~~dD---aVVV~Q~P~~-TldIL~~~kV~~~~v~~~~vi~IeLydd~AP~s~~yFRk~t 397 (503)
T TIGR03268 322 TQEEAEELLEELGIELEKEGVDGDD---AVVVKQEPPY-TLDVLKEGKVKVEGVPKDKVIEIELYDDNAPRSVWYFRKFT 397 (503)
T ss_pred CHHHHHHHHHhcCcEEeecCCCCCC---eEEEecCCch-HHHHhhcCcEEEEeeChHhEEEEEEcccCCchHHHHHHHhc
Confidence 5778889999999887643211111 1122345532 333333322 34678899999999999999999999
Q ss_pred CCeee
Q 022871 176 GMKLL 180 (291)
Q Consensus 176 G~~~~ 180 (291)
|+...
T Consensus 398 GL~~~ 402 (503)
T TIGR03268 398 GLKTK 402 (503)
T ss_pred CCccc
Confidence 99743
No 232
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.66 E-value=73 Score=20.30 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=15.8
Q ss_pred eeeEEEEEeCC-HHHHHHHHHHhcCCE
Q 022871 23 RFLHAVYRVGD-LDRTIKFYTECFGMK 48 (291)
Q Consensus 23 ~i~hv~l~v~d-~~~a~~fy~~~LG~~ 48 (291)
++.++.+.+.. -..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 34555555553 3448899987 8875
No 233
>PRK10562 putative acetyltransferase; Provisional
Probab=22.24 E-value=2.6e+02 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=18.8
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCEEEEeee
Q 022871 27 AVYRV-GDLDRTIKFYTECFGMKLLRKRD 54 (291)
Q Consensus 27 v~l~v-~d~~~a~~fy~~~LG~~~~~~~~ 54 (291)
+.+.| .+=..+.+||++ +||+......
T Consensus 100 ~~~~v~~~N~~s~~~y~k-~Gf~~~~~~~ 127 (145)
T PRK10562 100 LSLEVYQKNQRAVNFYHA-QGFRIVDSAW 127 (145)
T ss_pred EEEEEEcCChHHHHHHHH-CCCEEccccc
Confidence 33333 344679999998 9999876543
No 234
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=20.71 E-value=2.1e+02 Score=17.25 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCCEEEEEeCCC-CCCCceeEEeeeCCccccHHHHHhhhCC
Q 022871 138 DGYIFELIQRGP-TPEPLCQVMLRVGDLGRSIKFYEKALGM 177 (291)
Q Consensus 138 ~G~~iel~~~~~-~~~~~~hv~l~v~D~~~~~~Fy~~~lG~ 177 (291)
+|.++-++.-.+ ....+..-.++...+...++||.+.|-|
T Consensus 13 ~g~l~fl~kwk~~~~~lVp~~~~~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 13 DGELTFLAKWKDGQASLVPNKELNVKCPLLVISFYEEHLTY 53 (54)
T ss_pred CCeEEEEEEEeCCeEEEEEHHHHHhhCcHHHHHHHHHhccc
Confidence 376666666554 1122222235667899999999998765
Done!