Query 022872
Match_columns 291
No_of_seqs 129 out of 254
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyp_A RNA polymerase II; tran 80.7 0.84 2.9E-05 32.0 2.2 40 28-67 14-56 (57)
2 1tfi_A Transcriptional elongat 79.5 1.1 3.8E-05 31.5 2.4 36 30-65 10-48 (50)
3 3h0g_I DNA-directed RNA polyme 75.8 1.9 6.5E-05 34.3 3.1 41 26-66 69-112 (113)
4 1twf_I B12.6, DNA-directed RNA 69.0 4.3 0.00015 32.6 3.7 44 26-69 69-115 (122)
5 2fiy_A Protein FDHE homolog; F 55.4 4.5 0.00015 37.5 1.7 35 30-65 223-264 (309)
6 3po3_S Transcription elongatio 54.8 4.8 0.00017 34.5 1.7 37 29-65 137-176 (178)
7 3qt1_I DNA-directed RNA polyme 53.9 2.7 9.3E-05 34.7 0.0 38 29-66 92-132 (133)
8 1pqv_S STP-alpha, transcriptio 53.2 5.8 0.0002 36.4 2.1 36 30-65 269-307 (309)
9 3nw0_A Non-structural maintena 52.2 2.3 7.8E-05 37.7 -0.7 38 29-67 193-230 (238)
10 1gnf_A Transcription factor GA 41.4 13 0.00043 25.9 1.8 40 30-73 5-44 (46)
11 1ee8_A MUTM (FPG) protein; bet 36.6 12 0.00041 33.6 1.4 28 30-62 236-263 (266)
12 3cw1_L U1 small nuclear ribonu 34.1 10 0.00036 29.1 0.5 17 53-69 2-18 (77)
13 3dfx_A Trans-acting T-cell-spe 32.1 32 0.0011 25.3 2.8 43 30-76 8-50 (63)
14 4gat_A Nitrogen regulatory pro 30.8 30 0.001 25.6 2.5 43 29-75 9-51 (66)
15 1pft_A TFIIB, PFTFIIBN; N-term 28.5 24 0.00081 23.7 1.5 32 29-66 5-36 (50)
16 2k2d_A Ring finger and CHY zin 26.3 24 0.00083 26.7 1.3 12 30-41 56-67 (79)
17 4hc9_A Trans-acting T-cell-spe 23.7 61 0.0021 26.0 3.3 44 29-76 59-102 (115)
18 2akl_A PHNA-like protein PA012 21.0 41 0.0014 28.6 1.8 31 30-68 28-58 (138)
19 1dvp_A HRS, hepatocyte growth 21.0 43 0.0015 28.6 2.0 31 27-66 159-189 (220)
20 3zyq_A Hepatocyte growth facto 20.3 50 0.0017 28.6 2.3 38 21-67 156-193 (226)
No 1
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=80.69 E-value=0.84 Score=32.02 Aligned_cols=40 Identities=20% Similarity=0.632 Sum_probs=26.4
Q ss_pred cCCCCCCCCCCCcceeeecccCCCCC---chhhhccccccccC
Q 022872 28 EQLNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWTEG 67 (291)
Q Consensus 28 ~~~~CPRC~S~~TKfcyyNNy~~~QP---R~fCk~CrRyWT~G 67 (291)
-.++||+|...+..|--.+-.+...| .|.|..|.--|+..
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~~ 56 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSY 56 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEECC
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEeccC
Confidence 34789999984444333333334444 38999999999863
No 2
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=79.45 E-value=1.1 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.697 Sum_probs=27.2
Q ss_pred CCCCCCCCCCcceeeecccCCCCCc---hhhhccccccc
Q 022872 30 LNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWT 65 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT 65 (291)
..||+|...+.-|--.+..+...|- |.|..|..-|.
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 7899999887776555555555553 89999998885
No 3
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=75.82 E-value=1.9 Score=34.30 Aligned_cols=41 Identities=24% Similarity=0.564 Sum_probs=26.1
Q ss_pred CccCCCCCCCCCCCcceeeecccCCCCCc---hhhhcccccccc
Q 022872 26 PQEQLNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWTE 66 (291)
Q Consensus 26 p~~~~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT~ 66 (291)
|.-...||+|...+..|-..+-.+...|- |.|..|..-|++
T Consensus 69 p~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 69 PRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp CBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred CCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 33348899999876554333323333222 889999999975
No 4
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=69.00 E-value=4.3 Score=32.63 Aligned_cols=44 Identities=20% Similarity=0.580 Sum_probs=30.2
Q ss_pred CccCCCCCCCCCCCcceeeecccCCCCCc---hhhhccccccccCCc
Q 022872 26 PQEQLNCPRCNSTNTKFCYYNNYSLTQPR---YFCKTCRRYWTEGGS 69 (291)
Q Consensus 26 p~~~~~CPRC~S~~TKfcyyNNy~~~QPR---~fCk~CrRyWT~GG~ 69 (291)
|.-...||+|...+.-|-..+-.+...|- |.|..|.--|+..-.
T Consensus 69 p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~ 115 (122)
T 1twf_I 69 PRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK 115 (122)
T ss_dssp CCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred cccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCCh
Confidence 33348899999876655444444444443 899999999988643
No 5
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.38 E-value=4.5 Score=37.53 Aligned_cols=35 Identities=17% Similarity=0.559 Sum_probs=25.2
Q ss_pred CCCCCCCCCCcceeeecccC-------CCCCchhhhccccccc
Q 022872 30 LNCPRCNSTNTKFCYYNNYS-------LTQPRYFCKTCRRYWT 65 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~-------~~QPR~fCk~CrRyWT 65 (291)
..||.|... .++-|+.--. ...--+.|..|+.|+-
T Consensus 223 ~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 223 IKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp TSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 789999998 4677775433 1122389999999993
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=54.81 E-value=4.8 Score=34.47 Aligned_cols=37 Identities=19% Similarity=0.650 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCcceeeecccCCCCC---chhhhccccccc
Q 022872 29 QLNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWT 65 (291)
Q Consensus 29 ~~~CPRC~S~~TKfcyyNNy~~~QP---R~fCk~CrRyWT 65 (291)
...||+|...+..|--.+-.+..-| -|.|..|..-|.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 3789999976544322222222222 388999999995
No 7
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=53.86 E-value=2.7 Score=34.75 Aligned_cols=38 Identities=32% Similarity=0.750 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcceeeecccCCCCC---chhhhcccccccc
Q 022872 29 QLNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWTE 66 (291)
Q Consensus 29 ~~~CPRC~S~~TKfcyyNNy~~~QP---R~fCk~CrRyWT~ 66 (291)
...||+|...+..|-..+-.+...| -|.|..|.--|.+
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 4789999987665433333333222 2889999999975
No 8
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=53.15 E-value=5.8 Score=36.40 Aligned_cols=36 Identities=19% Similarity=0.666 Sum_probs=22.8
Q ss_pred CCCCCCCCCCcceeeecccCCCCC---chhhhccccccc
Q 022872 30 LNCPRCNSTNTKFCYYNNYSLTQP---RYFCKTCRRYWT 65 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~~~QP---R~fCk~CrRyWT 65 (291)
..||+|...+..|-=.+..+...| -|.|..|..-|.
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 789999966544322222233333 289999999995
No 9
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=52.25 E-value=2.3 Score=37.73 Aligned_cols=38 Identities=21% Similarity=0.557 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCcceeeecccCCCCCchhhhccccccccC
Q 022872 29 QLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEG 67 (291)
Q Consensus 29 ~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~G 67 (291)
+..|+.|...=+..|++ .|-.++...-|..|++.|+..
T Consensus 193 g~~C~~C~~~~H~~C~~-~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVA-KYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHH-HHTTTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHH-HHHHhCCCCCCCCCCCCCCCC
Confidence 57899999888888954 566677778999999999875
No 10
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=41.44 E-value=13 Score=25.94 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=29.1
Q ss_pred CCCCCCCCCCcceeeecccCCCCCchhhhccccccccCCccccc
Q 022872 30 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNV 73 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~GG~lRnv 73 (291)
..|..|...+|-. +- .-.....+|-+|.-||-..|..|-+
T Consensus 5 ~~C~~C~tt~Tp~--WR--~gp~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 5 RECVNCGATATPL--WR--RDRTGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CCCTTTCCCCCSS--CB--CCTTCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCcCCCCCCc--Cc--cCCCCCccchHHHHHHHHcCCCCCC
Confidence 5699999888762 21 1122338999999999999998744
No 11
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=36.62 E-value=12 Score=33.59 Aligned_cols=28 Identities=29% Similarity=0.680 Sum_probs=21.3
Q ss_pred CCCCCCCCCCcceeeecccCCCCCchhhhcccc
Q 022872 30 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRR 62 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrR 62 (291)
.+||||...=.|.-+ ..+.-|||..|++
T Consensus 236 ~pC~~CG~~I~~~~~-----~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVV-----AGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEES-----SSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEE-----CCCceEECCCCCC
Confidence 789999987766432 2356699999997
No 12
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=34.12 E-value=10 Score=29.10 Aligned_cols=17 Identities=29% Similarity=1.028 Sum_probs=14.5
Q ss_pred CchhhhccccccccCCc
Q 022872 53 PRYFCKTCRRYWTEGGS 69 (291)
Q Consensus 53 PR~fCk~CrRyWT~GG~ 69 (291)
|||||+=|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999987643
No 13
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=32.06 E-value=32 Score=25.33 Aligned_cols=43 Identities=19% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCCCCCCCCCcceeeecccCCCCCchhhhccccccccCCccccccCC
Q 022872 30 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVG 76 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~GG~lRnvPVG 76 (291)
..|-.|...+|-. +- .-.....+|-+|.=||-..|..|-+.+-
T Consensus 8 ~~C~~C~tt~Tp~--WR--~gp~G~~LCNACGl~~~~~~~~RP~~~~ 50 (63)
T 3dfx_A 8 TSCANCQTTTTTL--WR--RNANGDPVCNACGLYYKLHNINRPLTMK 50 (63)
T ss_dssp CCCTTTCCSCCSS--CC--CCTTSCCCCHHHHHHHHHHSSCCCGGGC
T ss_pred CcCCCcCCCCCCc--cC--CCCCCCchhhHHHHHHHHcCCCCCcCcC
Confidence 5699999988852 21 1122338999999999999998887653
No 14
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=30.77 E-value=30 Score=25.62 Aligned_cols=43 Identities=16% Similarity=0.480 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCcceeeecccCCCCCchhhhccccccccCCccccccC
Q 022872 29 QLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPV 75 (291)
Q Consensus 29 ~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~GG~lRnvPV 75 (291)
...|-.|.+.+|-. +=. ... -..+|-+|.-||-.-|.+|-+-.
T Consensus 9 ~~~C~~C~t~~Tp~-WR~--gp~-G~~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 9 PTTCTNCFTQTTPL-WRR--NPE-GQPLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp SCCCTTTCCCCCSS-CEE--ETT-TEEECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCCCCCCCCCc-CCc--CCC-CCCccHHHHHHHHHcCCCCchhh
Confidence 37899999988862 111 112 23899999999999999887754
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.49 E-value=24 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCcceeeecccCCCCCchhhhcccccccc
Q 022872 29 QLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTE 66 (291)
Q Consensus 29 ~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~ 66 (291)
.+.||.|.+.+-.| ...+-...|..|+.-+.+
T Consensus 5 ~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 37899998854332 234556999999876654
No 16
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=26.26 E-value=24 Score=26.71 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=11.1
Q ss_pred CCCCCCCCCCcc
Q 022872 30 LNCPRCNSTNTK 41 (291)
Q Consensus 30 ~~CPRC~S~~TK 41 (291)
..||.|.|.||+
T Consensus 56 ~kC~~C~SyNTr 67 (79)
T 2k2d_A 56 MKCKICESYNTA 67 (79)
T ss_dssp CCCTTTSCCCEE
T ss_pred ccCcCCCCcCeE
Confidence 489999999998
No 17
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=23.67 E-value=61 Score=25.98 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCcceeeecccCCCCCchhhhccccccccCCccccccCC
Q 022872 29 QLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVG 76 (291)
Q Consensus 29 ~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~GG~lRnvPVG 76 (291)
+..|-.|....|-- .- .-...+.+|-+|.-||..-|..|-+-+-
T Consensus 59 ~~~C~~C~t~~tp~--WR--r~~~g~~lCNaCgl~~~~~~~~rp~~~~ 102 (115)
T 4hc9_A 59 GTSCANCQTTTTTL--WR--RNANGDPVCNACGLYYKLHNINRPLTMK 102 (115)
T ss_dssp TCCCTTTCCSCCSS--CE--ECTTSCEECHHHHHHHHHHSSCCCGGGC
T ss_pred cccCCCcCCCCcce--eE--ECCCCCCcchHHHHHHHHhCCCCCcccc
Confidence 48999999988752 11 1223368999999999999998887663
No 18
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.99 E-value=41 Score=28.59 Aligned_cols=31 Identities=29% Similarity=0.662 Sum_probs=24.4
Q ss_pred CCCCCCCCCCcceeeecccCCCCCchhhhccccccccCC
Q 022872 30 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGG 68 (291)
Q Consensus 30 ~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~GG 68 (291)
.+||.|+|..|-. ...-+.|..|.-=|+...
T Consensus 28 P~CP~C~seytYe--------Dg~l~vCPeC~hEW~~~~ 58 (138)
T 2akl_A 28 PPCPQCNSEYTYE--------DGALLVCPECAHEWSPNE 58 (138)
T ss_dssp CCCTTTCCCCCEE--------CSSSEEETTTTEEECTTT
T ss_pred CCCCCCCCcceEe--------cCCeEECCccccccCCcc
Confidence 5699999987732 256799999999997544
No 19
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.96 E-value=43 Score=28.58 Aligned_cols=31 Identities=23% Similarity=0.681 Sum_probs=21.2
Q ss_pred ccCCCCCCCCCCCcceeeecccCCCCCchhhhcccccccc
Q 022872 27 QEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTE 66 (291)
Q Consensus 27 ~~~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~ 66 (291)
.+...|+.|.. +|- ...-||-|+.|.+-.=.
T Consensus 159 ~~~~~C~~C~~---~F~------~~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 159 ADGRVCHRCRV---EFT------FTNRKHHCRNCGQVFCG 189 (220)
T ss_dssp CCCSBCTTTCC---BCC------SSSCCEECTTTCCEECS
T ss_pred CCCCccCCCCC---ccC------CcccccccCCcCCEECh
Confidence 34578999964 443 44788999998775443
No 20
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.35 E-value=50 Score=28.57 Aligned_cols=38 Identities=21% Similarity=0.548 Sum_probs=23.9
Q ss_pred ccCCCCccCCCCCCCCCCCcceeeecccCCCCCchhhhccccccccC
Q 022872 21 ERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEG 67 (291)
Q Consensus 21 er~~~p~~~~~CPRC~S~~TKfcyyNNy~~~QPR~fCk~CrRyWT~G 67 (291)
++++.-.+...|..|.. +|= ...-||-|+.|.+-.=..
T Consensus 156 ~~~p~W~~~~~C~~C~~---~F~------~~~RrhHCR~CG~v~C~~ 193 (226)
T 3zyq_A 156 ERAPDWVDAEECHRCRV---QFG------VMTRKHHCRACGQIFCGK 193 (226)
T ss_dssp CCCCCCCCCSBCTTTCC---BCB------TTBCCEECTTTCCEECTT
T ss_pred ccccccccCCCCcCcCC---CCC------ccccccccCCCcCEeChh
Confidence 44444445578999974 443 346789898887755443
Done!