Query 022874
Match_columns 291
No_of_seqs 107 out of 116
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 06:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14295 PAN_4: PAN domain; PD 98.4 1E-07 2.2E-12 65.3 1.9 51 187-254 1-51 (51)
2 cd01100 APPLE_Factor_XI_like S 95.9 0.0091 2E-07 44.7 3.5 56 178-257 2-58 (73)
3 smart00223 APPLE APPLE domain. 95.4 0.024 5.2E-07 44.3 4.2 53 183-256 5-57 (79)
4 PF00024 PAN_1: PAN domain Thi 72.6 2.4 5.2E-05 30.5 1.6 51 184-258 7-58 (79)
5 COG5064 SRP1 Karyopherin (impo 71.6 6.4 0.00014 40.1 4.8 102 18-133 19-122 (526)
6 PF05250 UPF0193: Uncharacteri 68.9 9.1 0.0002 35.6 4.9 40 43-82 154-195 (212)
7 PF15027 DUF4525: Domain of un 67.6 5.2 0.00011 35.1 2.9 69 8-82 18-99 (138)
8 COG4741 Predicted secreted end 66.6 42 0.0009 30.6 8.4 14 94-107 64-77 (175)
9 PRK12705 hypothetical protein; 49.7 29 0.00062 36.1 5.1 15 4-18 9-23 (508)
10 PF12037 DUF3523: Domain of un 41.5 3.5E+02 0.0075 26.4 10.8 106 20-143 131-242 (276)
11 PF14719 PID_2: Phosphotyrosin 41.3 38 0.00081 30.8 4.0 46 67-120 104-151 (182)
12 PF07106 TBPIP: Tat binding pr 41.3 1.7E+02 0.0038 25.1 8.0 65 18-86 68-140 (169)
13 PF09216 Pfg27: Pfg27; InterP 39.1 55 0.0012 30.0 4.6 27 60-86 67-93 (186)
14 PF14446 Prok-RING_1: Prokaryo 38.2 15 0.00032 27.7 0.7 19 230-256 22-40 (54)
15 PF06303 MatP: Organiser of ma 37.9 22 0.00048 31.7 1.9 65 19-83 62-128 (148)
16 PF14226 DIOX_N: non-haem diox 37.6 46 0.00099 26.0 3.5 43 22-70 9-63 (116)
17 PF14142 YrzO: YrzO-like prote 37.4 21 0.00046 25.9 1.4 38 8-51 6-43 (46)
18 PRK10236 hypothetical protein; 36.9 53 0.0012 31.3 4.4 72 68-141 60-132 (237)
19 PF13591 MerR_2: MerR HTH fami 35.6 87 0.0019 24.4 4.8 39 16-54 34-80 (84)
20 KOG4603 TBP-1 interacting prot 35.3 67 0.0015 29.8 4.6 68 35-102 84-173 (201)
21 KOG4148 Uncharacterized conser 33.8 33 0.00072 28.9 2.2 40 9-55 31-80 (106)
22 PTZ00186 heat shock 70 kDa pre 32.1 3.7E+02 0.0079 28.7 10.0 66 17-82 525-596 (657)
23 KOG0994 Extracellular matrix g 30.8 2.2E+02 0.0047 33.5 8.4 73 25-103 1464-1548(1758)
24 cd01111 HTH_MerD Helix-Turn-He 30.7 2.9E+02 0.0064 22.4 7.5 34 16-49 36-69 (107)
25 cd02987 Phd_like_Phd Phosducin 30.3 73 0.0016 27.9 4.0 32 72-108 23-54 (175)
26 KOG3170 Conserved phosducin-li 30.2 43 0.00093 31.8 2.6 68 78-159 55-124 (240)
27 COG3109 ProQ Activator of osmo 28.4 76 0.0016 29.5 3.8 32 65-97 33-64 (208)
28 PF10828 DUF2570: Protein of u 27.8 83 0.0018 25.8 3.6 26 4-29 7-32 (110)
29 PRK05097 Ter macrodomain organ 27.7 29 0.00062 31.0 1.0 64 19-82 62-127 (150)
30 PF00038 Filament: Intermediat 26.2 1.4E+02 0.0031 27.6 5.3 67 64-131 157-225 (312)
31 TIGR03042 PS_II_psbQ_bact phot 26.1 1.8E+02 0.004 25.6 5.6 68 18-93 29-97 (142)
32 KOG0977 Nuclear envelope prote 25.9 2.4E+02 0.0052 30.0 7.3 54 70-124 243-298 (546)
33 PF06305 DUF1049: Protein of u 25.8 58 0.0012 23.7 2.1 45 4-54 21-65 (68)
34 PTZ00438 gamete antigen 27/25- 25.5 1.1E+02 0.0024 30.4 4.5 27 60-86 241-267 (374)
35 COG5134 Uncharacterized conser 25.3 1.2E+02 0.0025 29.2 4.5 35 69-107 155-189 (272)
36 PF07439 DUF1515: Protein of u 25.0 1.1E+02 0.0025 26.2 4.0 42 41-82 12-53 (112)
37 PF12004 DUF3498: Domain of un 24.2 26 0.00055 36.4 0.0 61 26-86 416-482 (495)
38 COG5302 Post-segregation antit 24.0 1.1E+02 0.0025 24.8 3.6 39 66-104 13-59 (80)
39 PRK12704 phosphodiesterase; Pr 23.4 1.7E+02 0.0037 30.4 5.7 10 116-125 147-156 (520)
40 KOG4752 Ribosomal protein L41 22.9 71 0.0015 20.7 1.8 13 95-107 3-15 (26)
41 PRK05431 seryl-tRNA synthetase 22.9 4.5E+02 0.0097 26.4 8.4 51 23-76 10-60 (425)
42 KOG2470 Similar to IMP-GMP spe 22.1 1.5E+02 0.0033 30.5 4.9 48 65-116 394-444 (510)
43 PF09440 eIF3_N: eIF3 subunit 21.7 1.9E+02 0.004 25.0 4.8 70 4-83 14-83 (133)
No 1
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=98.43 E-value=1e-07 Score=65.27 Aligned_cols=51 Identities=33% Similarity=0.682 Sum_probs=18.8
Q ss_pred ccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccc
Q 022874 187 TDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK 254 (291)
Q Consensus 187 tdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK 254 (291)
|||.|..+..+ .....|+++|+++|.+ ..+|+.|+|.+. ++.+ ..+.||||
T Consensus 1 ~d~~G~dl~~~-~~~~~s~~~C~~~C~~--------~~~C~~~~~~~~--~~~~------~~~~C~LK 51 (51)
T PF14295_consen 1 TDYPGGDLRSF-PVTASSPEECQAACAA--------DPGCQAFTFNPP--GCPS------SSGRCYLK 51 (51)
T ss_dssp ------------------HHHHHHHHHT--------STT--EEEEETT--EE----------------
T ss_pred Ccccccccccc-cccCCCHHHHHHHccC--------CCCCCEEEEECC--Cccc------ccccccCC
Confidence 68899988876 3478999999999997 468999999996 2322 46899998
No 2
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=95.91 E-value=0.0091 Score=44.69 Aligned_cols=56 Identities=29% Similarity=0.601 Sum_probs=43.2
Q ss_pred CCcccccc-cccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccccc
Q 022874 178 PPECHAEL-HTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 256 (291)
Q Consensus 178 ~~~C~~e~-htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK~~ 256 (291)
+..|+... |++|.|.-+. .....|+++|+++|.. ...|..|.|=.. .+.||||..
T Consensus 2 ~~~C~~~~~~~~~~g~d~~---~~~~~s~~~Cq~~C~~--------~~~C~afT~~~~-------------~~~C~lk~~ 57 (73)
T cd01100 2 PSSCFRQGSNVDFRGGDLS---TVFASSAEQCQAACTA--------DPGCLAFTYNTK-------------SKKCFLKSS 57 (73)
T ss_pred CcccccccCCCccccCCcc---eeecCCHHHHHHHcCC--------CCCceEEEEECC-------------CCeEEcccC
Confidence 45677765 9999996553 2347899999999998 468999999432 479999987
Q ss_pred C
Q 022874 257 E 257 (291)
Q Consensus 257 ~ 257 (291)
.
T Consensus 58 ~ 58 (73)
T cd01100 58 E 58 (73)
T ss_pred C
Confidence 4
No 3
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=95.39 E-value=0.024 Score=44.34 Aligned_cols=53 Identities=25% Similarity=0.446 Sum_probs=42.5
Q ss_pred ccccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccccc
Q 022874 183 AELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 256 (291)
Q Consensus 183 ~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK~~ 256 (291)
+..|+||.|.-+. .-...++.+|+..|..+ .+|-.|.|=.....+ ..||||..
T Consensus 5 ~~~~~df~G~Dl~---~~~~~~~~~Cq~~Ct~~--------~~C~~FTf~~~~~~~----------~~C~LK~s 57 (79)
T smart00223 5 IYKNVDFRGSDIN---TVYVPSAQVCQKRCTSH--------PRCLFFTFSTNEPPE----------EKCLLKDS 57 (79)
T ss_pred hccCccccCceee---eeecCCHHHHHHhhcCC--------CCccEEEeeCCCCCC----------CEeEeCcC
Confidence 3578999988663 44689999999999985 589999999986432 17999987
No 4
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=72.55 E-value=2.4 Score=30.46 Aligned_cols=51 Identities=22% Similarity=0.563 Sum_probs=36.6
Q ss_pred cccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCC-CceeEECCCCCCCCCCCccCCCCCcccccccCC
Q 022874 184 ELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMK-CNIWVYCPAETGCHSPDKYEHKYQECWLKYAEK 258 (291)
Q Consensus 184 e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~-CNvWVfC~d~~GC~spd~y~~~~geCWLK~~~~ 258 (291)
..+..+.|.++. .+.+.|..+|.+.|... .. |-+|.|-... +.|=|+....
T Consensus 7 ~~~~~l~~~~~~---~~~v~s~~~C~~~C~~~--------~~~C~s~~y~~~~-------------~~C~L~~~~~ 58 (79)
T PF00024_consen 7 IPGYRLSGHSIK---EINVPSLEECAQLCLNE--------PRRCKSFNYDPSS-------------KTCYLSSSDR 58 (79)
T ss_dssp EEEEEEESCEEE---EEEESSHHHHHHHHHHS--------TT-ESEEEEETTT-------------TEEEEECSSS
T ss_pred ECCEEEeCCcce---EEcCCCHHHHHhhcCcC--------cccCCeEEEECCC-------------CEEEEcCCCC
Confidence 345566665442 23668999999999983 34 9999998873 6888886644
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=71.60 E-value=6.4 Score=40.07 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=62.8
Q ss_pred ccCHHHHHHHHHH--HHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCChHHHHHHHH
Q 022874 18 KYTPDQIRNMEES--VRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVE 95 (291)
Q Consensus 18 ~yt~~Qir~~eES--~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~~sn~~~qr~AlE 95 (291)
.|+.|++||++|. ++||+...---|-|| +.| ++.++...+-.-.++|+.-.|+-|-+++| .+.++.+|-+|+-
T Consensus 19 ~f~adelRr~ReeQQvElRkqKreE~LnKr-RNl---~dv~e~a~ss~i~meqq~~~elp~lt~~l-~SdDie~q~qav~ 93 (526)
T COG5064 19 RFSADELRRRREEQQVELRKQKREELLNKR-RNL---ADVSEEAESSFIPMEQQFYSELPQLTQQL-FSDDIEQQLQAVY 93 (526)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccc---ccccchhhhccCchhHHhhhhhHHHHHHH-hhhHHHHHHHHHH
Confidence 4899999999886 566766554333333 333 23322222222356788888999999999 4578889999999
Q ss_pred HHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHhh
Q 022874 96 SWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLES 133 (291)
Q Consensus 96 ~WRkeKLe~~k~~~~~k~gsnst~~~eea~~l~~~~e~ 133 (291)
+.|+==-+ ..+---.+.=+|+-+-|-+|+
T Consensus 94 kFR~~LS~---------E~~PPIq~VIdaGvVpRfvef 122 (526)
T COG5064 94 KFRKLLSK---------ETSPPIQPVIDAGVVPRFVEF 122 (526)
T ss_pred HHHHHhcc---------ccCCCchhHHhccccHHHHHH
Confidence 88863222 222222333466666666654
No 6
>PF05250 UPF0193: Uncharacterised protein family (UPF0193); InterPro: IPR007914 This family of proteins is functionally uncharacterised.
Probab=68.91 E-value=9.1 Score=35.63 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=29.1
Q ss_pred HHHHHHHH--HhhhcccccccccHHHHhHHHHHHHHHhhhcc
Q 022874 43 VKLVNGLK--QEFSRDESVFELPRAVKLRMIDEILRRLQSSD 82 (291)
Q Consensus 43 I~rVKei~--~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~ 82 (291)
-+.|+||+ .||..+-..-..-+..+.-|..||+|||+.|.
T Consensus 154 ~elv~EI~ER~efL~eMe~LG~gk~yr~~I~~EIsqrlrele 195 (212)
T PF05250_consen 154 EELVQEIEERREFLAEMEALGQGKKYRGIILTEISQRLRELE 195 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 34566665 36666544445556789999999999999994
No 7
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=67.63 E-value=5.2 Score=35.07 Aligned_cols=69 Identities=29% Similarity=0.392 Sum_probs=39.4
Q ss_pred hHHhhhcc-ccccCHHHHHHHHHHHHHHhhcCcHHHHHH-HHHHHHhhhccccccccc--------HHHHhHHH---HHH
Q 022874 8 FFFFQLCT-VVKYTPDQIRNMEESVRIRSDNEPMALVKL-VNGLKQEFSRDESVFELP--------RAVKLRMI---DEI 74 (291)
Q Consensus 8 ~~~~~~~~-~v~yt~~Qir~~eES~riRra~ePveLI~r-VKei~~E~~~e~~~~~lp--------~~~kqk~a---~ei 74 (291)
.|-|..|- ...||-+| .+=+-|...|.-. ++|-|| ||.|-.|-.. ...-| .++|.++| |+|
T Consensus 18 ~fGfiWGlmLLh~t~qq-~~~~ss~~LR~QI--LdLSkrYVKaLAeEn~~---~~dgp~~~smagYaDLKktiAVLLddi 91 (138)
T PF15027_consen 18 VFGFIWGLMLLHYTFQQ-PRHQSSAELREQI--LDLSKRYVKALAEENKN---VVDGPYGASMAGYADLKKTIAVLLDDI 91 (138)
T ss_pred HHHHHHHHHHHHheecC-CCccChHHHHHHH--HHHHHHHHHHHHHHcCC---CCCCCcchhhHHHHHHhhhhhhhhhHH
Confidence 34455554 45677766 5556666666532 233322 4444444322 12222 27888877 799
Q ss_pred HHHhhhcc
Q 022874 75 LRRLQSSD 82 (291)
Q Consensus 75 ~qRL~dl~ 82 (291)
+|||..|.
T Consensus 92 LqRl~kLE 99 (138)
T PF15027_consen 92 LQRLVKLE 99 (138)
T ss_pred HHHHHHHH
Confidence 99999884
No 8
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=66.61 E-value=42 Score=30.56 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhh
Q 022874 94 VESWRREKLEEAKQ 107 (291)
Q Consensus 94 lE~WRkeKLe~~k~ 107 (291)
+.+|-++|+++||.
T Consensus 64 l~E~iekkieeaR~ 77 (175)
T COG4741 64 LKEWIEKKIEEARE 77 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999998
No 9
>PRK12705 hypothetical protein; Provisional
Probab=49.67 E-value=29 Score=36.06 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=8.3
Q ss_pred ehhhhHHhhhccccc
Q 022874 4 VILPFFFFQLCTVVK 18 (291)
Q Consensus 4 ~~~~~~~~~~~~~v~ 18 (291)
++|||.-|-+|..+.
T Consensus 9 ~~~~~~~~~~~~~~~ 23 (508)
T PRK12705 9 ILLLLIGLLLGVLVV 23 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345565566666443
No 10
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=41.54 E-value=3.5e+02 Score=26.42 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=65.7
Q ss_pred CHHHHHHHHHH----HHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCChH--HHHHH
Q 022874 20 TPDQIRNMEES----VRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVS--AQREA 93 (291)
Q Consensus 20 t~~Qir~~eES----~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~~sn~~--~qr~A 93 (291)
..+.++.-||| +.+||+.+=-=|-.+.+-++.|+..+.+ ..+.|+..|.=-|.+.=+.|-|+. ..+.=
T Consensus 131 n~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e------~~~~k~~AEa~gra~~eReN~Di~l~~l~~k 204 (276)
T PF12037_consen 131 NEELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRE------TERAKAEAEAEGRAKEERENEDINLEQLRLK 204 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 45667777777 5688887655554555556666554433 446677777666777666666633 33333
Q ss_pred HHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHhhhhHHHHHhhc
Q 022874 94 VESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVLESDWAALSEEIG 143 (291)
Q Consensus 94 lE~WRkeKLe~~k~~~~~k~gsnst~~~eea~~l~~~~e~~w~~~~e~ig 143 (291)
.++=|+..|+-++.- .++ -+--.++|=+||+.|..-+|
T Consensus 205 a~e~R~t~lesI~t~----------f~~--lg~G~~~lltD~~kl~~~vg 242 (276)
T PF12037_consen 205 AEEERETVLESINTT----------FSH--LGEGFRALLTDRDKLTTTVG 242 (276)
T ss_pred HHHHHHHHHHHHHHH----------HHH--HHHHHHHHHhCHHHHHHHHH
Confidence 566778888876661 111 23345677888888887765
No 11
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=41.30 E-value=38 Score=30.83 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHhhhhccc--ccccccch
Q 022874 67 KLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGR--QGINSTIL 120 (291)
Q Consensus 67 kqk~a~ei~qRL~dl~~~sn~~~qr~AlE~WRkeKLe~~k~~~~~k--~gsnst~~ 120 (291)
|...|.+|.-+|..- -+.|+++|+++|+.+-+++.+.. ..+|.+++
T Consensus 104 k~~~Akama~~L~~a--------f~~Af~~~kr~k~~~~~~~l~~~~s~~~~p~~p 151 (182)
T PF14719_consen 104 KEEKAKAMARALYQA--------FRSAFQEFKRDKRSRQNARLSLGNSVYSNPTMP 151 (182)
T ss_pred CHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhchhccccCCCCCh
Confidence 445566666666543 24799999999999766644333 33355554
No 12
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.26 E-value=1.7e+02 Score=25.11 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHHHHH-HHhhcCcHHHHHHHHHHHHhhhccccccccc-HHHHhHH------HHHHHHHhhhcccCCC
Q 022874 18 KYTPDQIRNMEESVR-IRSDNEPMALVKLVNGLKQEFSRDESVFELP-RAVKLRM------IDEILRRLQSSDVKGN 86 (291)
Q Consensus 18 ~yt~~Qir~~eES~r-iRra~ePveLI~rVKei~~E~~~e~~~~~lp-~~~kqk~------a~ei~qRL~dl~~~sn 86 (291)
..+++++..|...+. +|. +=-+|=.-+|.++.|+..=.. .++ .+++..| ...+-.||..|++++.
T Consensus 68 ~~s~eel~~ld~ei~~L~~--el~~l~~~~k~l~~eL~~L~~--~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELRE--ELAELKKEVKSLEAELASLSS--EPTNEELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred CCCchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 367888888886533 222 222344455555555543211 111 1222222 3466778888877544
No 13
>PF09216 Pfg27: Pfg27; InterPro: IPR015299 Members of this family are essential for gametocytogenesis in Plasmodium falciparum. They contain a fold composed of two pseudo dyad-related repeats of the helix-turn-helix motif, serving as a platform for RNA and Src homology-3 (SH3) binding []. ; PDB: 1N81_A.
Probab=39.13 E-value=55 Score=29.97 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred ccccHHHHhHHHHHHHHHhhhcccCCC
Q 022874 60 FELPRAVKLRMIDEILRRLQSSDVKGN 86 (291)
Q Consensus 60 ~~lp~~~kqk~a~ei~qRL~dl~~~sn 86 (291)
..||.++|-.+|.-||.||+|+...-.
T Consensus 67 f~lp~ei~dsmalRISdRLr~ycfdk~ 93 (186)
T PF09216_consen 67 FRLPFEIRDSMALRISDRLRDYCFDKE 93 (186)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHSSS-
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHccch
Confidence 689999999999999999999988655
No 14
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=38.16 E-value=15 Score=27.70 Aligned_cols=19 Identities=42% Similarity=1.130 Sum_probs=15.4
Q ss_pred EECCCCCCCCCCCccCCCCCccccccc
Q 022874 230 VYCPAETGCHSPDKYEHKYQECWLKYA 256 (291)
Q Consensus 230 VfC~d~~GC~spd~y~~~~geCWLK~~ 256 (291)
|.|++ |++| -|++||.+..
T Consensus 22 VvCp~---Cgap-----yHR~C~~~~g 40 (54)
T PF14446_consen 22 VVCPE---CGAP-----YHRDCWEKAG 40 (54)
T ss_pred EECCC---CCCc-----ccHHHHhhCC
Confidence 77886 9987 5899998854
No 15
>PF06303 MatP: Organiser of macrodomain of Terminus of chromosome; InterPro: IPR009390 Many bacteria have circular genomes that are large in comparison to their cellular dimensions; this imposes the necessity for compaction of the chromosome during cellular growth, replication, transcription, and segregation. Compaction of chromosomes results in the formation of structures called nucleoids. Nucleoids can be generated by a number of different processes: they include unrestrained DNA supercoiling, formation of a chromatin-like structure through the interaction of DNA binding proteins, condensation by structural maintenance of chromosomes (SMC)-like proteins, and macromolecular crowding []. Chromosome replication and segregation are intimately linked and tightly controlled to ensure that daughter cells each receive a complete copy of the genome. Chromosomes have replication origin (Ori) and termination (Ter) regions that are diametrically opposed. During the process of chromosome replication and cell division the Ori and Ter regions form two macrodomains (MDs), the Ori MD is centred on migS, a 25 bp sequence, that acts as the cis-acting site for the bipolar positioning of oriC []. The Ter MD is centred on dif (deletion-induced filamentation), which is a resolvase site that reduces chromosome multimers to monomers []. The Ori and Ter MDs are insulated from one and other by non-structural regions and other nucleoids. Chromosome replication initiates bidirectionally from oriC. Within the Ori MD with sister chromatids being located in separate cell halves and with the Ter macrodomain anchored to the cell pole. Cell division occurs with the completion of replication of the Ter region and the subsequent separation of the two sister chromatids [, ]. This entry contains MatP (YcbG), which is a component of the MatP/MatS site-specific system that organises the Ter macrodomain (MD) in Escherichia coli (strain K12) and related enterobacteria during replication of the chromosome. In E. coli there are 23 matS sequences, located in the Ter region which is centred on dif. The matS consensus is a palindromic sequence 5'-GTGAC[AG][CT]GTCAC, which is the recognition sequence for MatP. MatP binds to the matS sequences; and is critical for Ter MD formation. Inactivation of matP causes severe defects in chromosome segregation and cell division revealing its role as a major organiser of the Ter MD [].
Probab=37.87 E-value=22 Score=31.67 Aligned_cols=65 Identities=9% Similarity=0.179 Sum_probs=38.1
Q ss_pred cCHHHHHHHHHHHHHHhhcC--cHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhccc
Q 022874 19 YTPDQIRNMEESVRIRSDNE--PMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDV 83 (291)
Q Consensus 19 yt~~Qir~~eES~riRra~e--PveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~ 83 (291)
.+|+|..+|.-+||.||.=- -=..-.+.|-|..++..=..-+.+.+...-++++-|.++|.+-..
T Consensus 62 m~~~l~nklkQaIRArRkR~fnae~~~t~kKSIDLey~vW~rLS~lA~~~g~TLSEtI~~li~e~e~ 128 (148)
T PF06303_consen 62 MNPELWNKLKQAIRARRKRHFNAEHQHTRKKSIDLEYRVWQRLSALAQRRGMTLSETIEYLIEEAER 128 (148)
T ss_pred CCHHHHHHHHHHHHHHHHhhccccccCCCcceeeecHHHHHHHHHHHHHcCCcHHHHHHHHHHhHHH
Confidence 68999999999999998521 000111224444444332223344445556777888888877643
No 16
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=37.63 E-value=46 Score=26.01 Aligned_cols=43 Identities=28% Similarity=0.351 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhcC------------cHHHHHHHHHHHHhhhcccccccccHHHHhHH
Q 022874 22 DQIRNMEESVRIRSDNE------------PMALVKLVNGLKQEFSRDESVFELPRAVKLRM 70 (291)
Q Consensus 22 ~Qir~~eES~riRra~e------------PveLI~rVKei~~E~~~e~~~~~lp~~~kqk~ 70 (291)
+.-.+-+.+.+|+.|.+ |.+||++|.++-++|-. ||.+.|++.
T Consensus 9 ~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~------lp~e~K~~~ 63 (116)
T PF14226_consen 9 DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFA------LPLEEKQKY 63 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHC------SHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHH------hhHHHHHHh
Confidence 33455666777777764 77899999988888874 888888887
No 17
>PF14142 YrzO: YrzO-like protein
Probab=37.43 E-value=21 Score=25.91 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=19.8
Q ss_pred hHHhhhccccccCHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Q 022874 8 FFFFQLCTVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQ 51 (291)
Q Consensus 8 ~~~~~~~~~v~yt~~Qir~~eES~riRra~ePveLI~rVKei~~ 51 (291)
+|||++|++-.+.. |++ +--..-.+--|||+.+||++.
T Consensus 6 lff~a~gvacelaa--inr----ngrk~ikqqaeliqllkel~e 43 (46)
T PF14142_consen 6 LFFFAAGVACELAA--INR----NGRKKIKQQAELIQLLKELKE 43 (46)
T ss_pred HHHHHHHHHHHHHH--Hhh----hhHHHHHHHHHHHHHHHHHHH
Confidence 57888887653321 211 011112344577777777753
No 18
>PRK10236 hypothetical protein; Provisional
Probab=36.90 E-value=53 Score=31.27 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHhhhhccc-ccccccchHHHHHHHHHHHhhhhHHHHHh
Q 022874 68 LRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQLSIGR-QGINSTILQEEARMLVRVLESDWAALSEE 141 (291)
Q Consensus 68 qk~a~ei~qRL~dl~~~sn~~~qr~AlE~WRkeKLe~~k~~~~~k-~gsnst~~~eea~~l~~~~e~~w~~~~e~ 141 (291)
++-.+.|.+||+-|+.|+-+.-.|+-=.++|.==+.-.+. --.+ +...|+.. =|+.+|.+.++.-|+.+.++
T Consensus 60 ~~yw~~Ia~elq~fGgnt~~n~lRG~Gv~YreIL~DVc~~-LKV~y~~~~st~~-iE~~il~kll~~a~~kms~e 132 (237)
T PRK10236 60 RRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKR-LKLKADKEMSTFE-IEQQLLEQFLRNTWKKMDEE 132 (237)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCCccHHHHHHHHHHH-cCCCCCCCCCHHH-HHHHHHHHHHHHHHHHCCHH
Confidence 4566799999999998777656664222666433333333 3333 33334443 48899999999999877654
No 19
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=35.64 E-value=87 Score=24.40 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=31.2
Q ss_pred ccccCHHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHHHhhh
Q 022874 16 VVKYTPDQIRNMEESVRIRSDNE--------PMALVKLVNGLKQEFS 54 (291)
Q Consensus 16 ~v~yt~~Qir~~eES~riRra~e--------PveLI~rVKei~~E~~ 54 (291)
...|+++++.+++-..|+++.+. =++|+++|..|++|..
T Consensus 34 ~~~f~~~~l~rl~~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~ 80 (84)
T PF13591_consen 34 EWYFSEEDLARLRRIRRLHRDLGINLEGIALILDLLDRIEQLRRELR 80 (84)
T ss_pred eeeECHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999876 2567777777777764
No 20
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.28 E-value=67 Score=29.77 Aligned_cols=68 Identities=26% Similarity=0.359 Sum_probs=39.0
Q ss_pred hhcCcHHHHHHHHHHHHhhhcccc-cccccHHH----Hh-------HHHHHHHHHhhhcccCCC--hHHHHH--------
Q 022874 35 SDNEPMALVKLVNGLKQEFSRDES-VFELPRAV----KL-------RMIDEILRRLQSSDVKGN--VSAQRE-------- 92 (291)
Q Consensus 35 ra~ePveLI~rVKei~~E~~~e~~-~~~lp~~~----kq-------k~a~ei~qRL~dl~~~sn--~~~qr~-------- 92 (291)
..++=+.|-+.|..|+++.+.=+. ..+|+..+ -| |....-..||.+|++..| .-+-++
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~ 163 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQK 163 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 344557788888888888764322 23333322 12 233455789999988777 122222
Q ss_pred HHHHHHHHHH
Q 022874 93 AVESWRREKL 102 (291)
Q Consensus 93 AlE~WRkeKL 102 (291)
+.-.|||+|=
T Consensus 164 ~~~~wrk~kr 173 (201)
T KOG4603|consen 164 YCKEWRKRKR 173 (201)
T ss_pred HHHHHHHHHH
Confidence 4566777653
No 21
>KOG4148 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.76 E-value=33 Score=28.89 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=26.6
Q ss_pred HHhhhcccccc----------CHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhc
Q 022874 9 FFFQLCTVVKY----------TPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSR 55 (291)
Q Consensus 9 ~~~~~~~~v~y----------t~~Qir~~eES~riRra~ePveLI~rVKei~~E~~~ 55 (291)
=||.+|+-++| -.+.-|-.+||+++|..+ ++ |.|+.|-+.
T Consensus 31 kfFG~CN~~k~eL~kCLk~~~~nnk~r~~~e~~~mRkkv-----~~--kk~~~EE~e 80 (106)
T KOG4148|consen 31 KFFGYCNDVKRELRKCLKNEYVNNKTRSREEGIAMRKKV-----FN--KKIPPEESE 80 (106)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----Hh--ccCCHHHHH
Confidence 37889998864 334567788899888753 33 556655554
No 22
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=32.07 E-value=3.7e+02 Score=28.68 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=31.6
Q ss_pred cccCHHHHHHHHHHHH-HHhhcCc-HHHHHHHHHHHHhhhccccc----ccccHHHHhHHHHHHHHHhhhcc
Q 022874 17 VKYTPDQIRNMEESVR-IRSDNEP-MALVKLVNGLKQEFSRDESV----FELPRAVKLRMIDEILRRLQSSD 82 (291)
Q Consensus 17 v~yt~~Qir~~eES~r-iRra~eP-veLI~rVKei~~E~~~e~~~----~~lp~~~kqk~a~ei~qRL~dl~ 82 (291)
..+|+++|++|.+..+ -+.+-++ -++++...+.+.-+++-+.. ..++.+-|+++-..|.+--..|.
T Consensus 525 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 596 (657)
T PTZ00186 525 GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEWKYVSDAEKENVKTLVAELRKAME 596 (657)
T ss_pred ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHh
Confidence 3589999998854443 2222222 23333344444444433221 24566666655444444333443
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.84 E-value=2.2e+02 Score=33.54 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHH----------hhhcccccc--cccHHHHhHHHHHHHHHhhhcccCCChHHHHH
Q 022874 25 RNMEESVRIRSDNEPMALVKLVNGLKQ----------EFSRDESVF--ELPRAVKLRMIDEILRRLQSSDVKGNVSAQRE 92 (291)
Q Consensus 25 r~~eES~riRra~ePveLI~rVKei~~----------E~~~e~~~~--~lp~~~kqk~a~ei~qRL~dl~~~sn~~~qr~ 92 (291)
.+|++|++.=+ .||+.|+++.. |+..+.-.. .+..+--|.++.+|-.|+.+|.. -+..-+|-
T Consensus 1464 ~q~~~s~~el~-----~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n-Vd~IL~~T 1537 (1758)
T KOG0994|consen 1464 SQMEESNRELR-----NLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPN-VDAILSRT 1537 (1758)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccc-HHHHHHhh
Confidence 45666665332 57877776532 222222222 33445567889999999999953 33333332
Q ss_pred HHHHHHHHHHH
Q 022874 93 AVESWRREKLE 103 (291)
Q Consensus 93 AlE~WRkeKLe 103 (291)
+=.-=|.+.|+
T Consensus 1538 ~~di~ra~~L~ 1548 (1758)
T KOG0994|consen 1538 KGDIARAENLQ 1548 (1758)
T ss_pred hhhHHHHHHHH
Confidence 33333444443
No 24
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=30.65 E-value=2.9e+02 Score=22.39 Aligned_cols=34 Identities=0% Similarity=-0.159 Sum_probs=27.7
Q ss_pred ccccCHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 022874 16 VVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGL 49 (291)
Q Consensus 16 ~v~yt~~Qir~~eES~riRra~ePveLI~rVKei 49 (291)
.-.|++++++++.--...|..=-|++-|+.+-++
T Consensus 36 ~R~Y~~~~l~~l~~I~~lr~~G~~l~~I~~~l~~ 69 (107)
T cd01111 36 YGLFDDCALQRLRFVRAAFEAGIGLDELARLCRA 69 (107)
T ss_pred CeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4459999999999998889888898887666544
No 25
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.30 E-value=73 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHhhh
Q 022874 72 DEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQL 108 (291)
Q Consensus 72 ~ei~qRL~dl~~~sn~~~qr~AlE~WRkeKLe~~k~~ 108 (291)
++-.++|-++.+.- -+-|+.||..+|++.|+.
T Consensus 23 ~~~~~~~d~~~~~~-----e~~l~~~R~~R~~el~~~ 54 (175)
T cd02987 23 KESEQEDDDDDEDK-----EEFLQQYREQRMQEMHAK 54 (175)
T ss_pred hchhhhhhhhhhhH-----HHHHHHHHHHHHHHHHHh
Confidence 88888998886511 127999999999999984
No 26
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=30.22 E-value=43 Score=31.79 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=44.0
Q ss_pred hhhcccCCChHHHHHHHHHHHHHHHHHHhhhhcc-cccccccchHHH-HHHHHHHHhhhhHHHHHhhccccCceeecccc
Q 022874 78 LQSSDVKGNVSAQREAVESWRREKLEEAKQLSIG-RQGINSTILQEE-ARMLVRVLESDWAALSEEIGLWIPTEIIHKEH 155 (291)
Q Consensus 78 L~dl~~~sn~~~qr~AlE~WRkeKLe~~k~~~~~-k~gsnst~~~ee-a~~l~~~~e~~w~~~~e~ig~w~p~~~~~~~~ 155 (291)
|-+|.+--|.-..| +||..|+++|.+.|..+.. |-|+..-||.-+ ...+-.|.+ |+|+ |+|.-.
T Consensus 55 LeelEDded~dDer-fLE~YR~kRl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~----------gvwV---vvhLy~ 120 (240)
T KOG3170|consen 55 LEELEDDEDSDDER-FLEMYRIKRLAEWRATAEKAKFGEVFPISGPDYVKEVTKASE----------GVWV---VVHLYK 120 (240)
T ss_pred HHHhhhcccccHHH-HHHHHHHHHHHHHHHHHHHhcccceeeccchHHHHHHHhccC----------ccEE---EEEeec
Confidence 44555444444556 9999999999999985443 368888887644 444556666 5565 555555
Q ss_pred CCCC
Q 022874 156 GDKP 159 (291)
Q Consensus 156 ~~k~ 159 (291)
+.+|
T Consensus 121 ~gvp 124 (240)
T KOG3170|consen 121 QGVP 124 (240)
T ss_pred cccH
Confidence 5443
No 27
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=28.40 E-value=76 Score=29.54 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=26.4
Q ss_pred HHHhHHHHHHHHHhhhcccCCChHHHHHHHHHH
Q 022874 65 AVKLRMIDEILRRLQSSDVKGNVSAQREAVESW 97 (291)
Q Consensus 65 ~~kqk~a~ei~qRL~dl~~~sn~~~qr~AlE~W 97 (291)
-+|+-|-.|+.+||.|+. +-+.++.|+||--|
T Consensus 33 PLKiGifQDl~e~lq~d~-~vSktQLrqAlr~y 64 (208)
T COG3109 33 PLKIGIFQDLAERLQDDE-NVSKTQLRQALRLY 64 (208)
T ss_pred chhhhHHHHHHHHHhccc-cccHHHHHHHHHHH
Confidence 689999999999999995 45567888898654
No 28
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=27.81 E-value=83 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=17.4
Q ss_pred ehhhhHHhhhccccccCHHHHHHHHH
Q 022874 4 VILPFFFFQLCTVVKYTPDQIRNMEE 29 (291)
Q Consensus 4 ~~~~~~~~~~~~~v~yt~~Qir~~eE 29 (291)
++|-||+..||..+-|....|...+.
T Consensus 7 ~~l~~lvl~L~~~l~~qs~~i~~L~a 32 (110)
T PF10828_consen 7 IALAVLVLGLGGWLWYQSQRIDRLRA 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777665443
No 29
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=27.72 E-value=29 Score=30.96 Aligned_cols=64 Identities=11% Similarity=0.243 Sum_probs=36.0
Q ss_pred cCHHHHHHHHHHHHHHhhc--CcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcc
Q 022874 19 YTPDQIRNMEESVRIRSDN--EPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSD 82 (291)
Q Consensus 19 yt~~Qir~~eES~riRra~--ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~ 82 (291)
.+|++..+|..|||.||.- .-=..--+=|-|..|+..=..-+.+.+...-++++-|.+.|-|..
T Consensus 62 m~p~l~nklkQaIRArRKRhFNAE~qhTrKKSIDLey~vW~rLs~~a~~~~~TLSetI~~li~eae 127 (150)
T PRK05097 62 MNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEYRVWQRLAGLAQRRGKTLSETIVQLIEDAE 127 (150)
T ss_pred cCHHHHHHHHHHHHHHHHccCCcccccccccCccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7899999999999999852 000011111333333332222233444555567777777777664
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.16 E-value=1.4e+02 Score=27.60 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHhhhcccCC--ChHHHHHHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHH
Q 022874 64 RAVKLRMIDEILRRLQSSDVKG--NVSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEARMLVRVL 131 (291)
Q Consensus 64 ~~~kqk~a~ei~qRL~dl~~~s--n~~~qr~AlE~WRkeKLe~~k~~~~~k~gsnst~~~eea~~l~~~~ 131 (291)
.++++.-..+|..-|++++.-- .+..-++-++.|=+.|+++++. ...++.....-..+|...+.+.+
T Consensus 157 ~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~-~~~~~~~~~~~~~~E~~~~r~~~ 225 (312)
T PF00038_consen 157 VEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ-QSEKSSEELESAKEELKELRRQI 225 (312)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc-cccccccccchhHhHHHHHHhhh
Confidence 3445555667888888887432 2555666799999999999998 66666666666666665555544
No 31
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=26.12 E-value=1.8e+02 Score=25.62 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCChHHHHHH
Q 022874 18 KYTPDQIRNMEESVRIRSDNEPM-ALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREA 93 (291)
Q Consensus 18 ~yt~~Qir~~eES~riRra~ePv-eLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~~sn~~~qr~A 93 (291)
.|||+||..|+...+ ++ +.-+|..||+.=+..+.= ....+.++-.+.+ +.+-|..+..+-.-..|++|
T Consensus 29 tysp~~l~~i~~~~~------~i~~~~~r~~eLk~lI~kk~W-~~vrn~irgp~g~-Lr~dl~~l~~sl~p~dqk~a 97 (142)
T TIGR03042 29 TYSPAQLAQIQRQAE------GIEAAKDRLPELASLVAKEDW-VFTRNLIHGPMGE-VRREMTYLNQSLLPKDQKEA 97 (142)
T ss_pred CCCHHHHHHHHHHHH------HHHHHHHhhHHHHHHHhhcch-HHHHHHHhccHHH-HHHHHHHHHHccCHHhHHHH
Confidence 699999998876543 32 233455555544443221 3444455554443 55556666555555555544
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.90 E-value=2.4e+02 Score=29.97 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhcccCCC--hHHHHHHHHHHHHHHHHHHhhhhcccccccccchHHHH
Q 022874 70 MIDEILRRLQSSDVKGN--VSAQREAVESWRREKLEEAKQLSIGRQGINSTILQEEA 124 (291)
Q Consensus 70 ~a~ei~qRL~dl~~~sn--~~~qr~AlE~WRkeKLe~~k~~~~~k~gsnst~~~eea 124 (291)
--.+|.+=|+++++.-. ...-|+.+|.|=+.||.++|. ....+........||-
T Consensus 243 F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~-~~~~~~~~~~~~rEEl 298 (546)
T KOG0977|consen 243 FKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT-SAERANVEQNYAREEL 298 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-hhccccchhHHHHHHH
Confidence 34566777777776443 445577899999999999997 5566655555555653
No 33
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.82 E-value=58 Score=23.67 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=26.4
Q ss_pred ehhhhHHhhhccccccCHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhh
Q 022874 4 VILPFFFFQLCTVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFS 54 (291)
Q Consensus 4 ~~~~~~~~~~~~~v~yt~~Qir~~eES~riRra~ePveLI~rVKei~~E~~ 54 (291)
.++-++.|.+|.++.+---=..+++-..++|+.- ++++++|+|..
T Consensus 21 ~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~------k~l~~le~e~~ 65 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLR------KELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3445666777876654444444555555555533 46677777665
No 34
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=25.53 E-value=1.1e+02 Score=30.36 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=24.6
Q ss_pred ccccHHHHhHHHHHHHHHhhhcccCCC
Q 022874 60 FELPRAVKLRMIDEILRRLQSSDVKGN 86 (291)
Q Consensus 60 ~~lp~~~kqk~a~ei~qRL~dl~~~sn 86 (291)
..||.++|-.+|.-|+.||+|+...-.
T Consensus 241 frLp~eIrDsMalRISDRLr~fCfdk~ 267 (374)
T PTZ00438 241 FRLPFEIRDSMALRISDRLRDFCFSDP 267 (374)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCcc
Confidence 689999999999999999999987554
No 35
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=25.30 E-value=1.2e+02 Score=29.20 Aligned_cols=35 Identities=43% Similarity=0.516 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHhh
Q 022874 69 RMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQ 107 (291)
Q Consensus 69 k~a~ei~qRL~dl~~~sn~~~qr~AlE~WRkeKLe~~k~ 107 (291)
.-+|+|-+||-+.-. .++|++-++.-|+.|||. +|
T Consensus 155 n~~D~L~Krl~~~~~---~~~~~~~~~~~~~k~~e~-~q 189 (272)
T COG5134 155 NFIDELNKRLWSDPF---VSSQRLRKQFRERKKIEK-KQ 189 (272)
T ss_pred hHHHHHHHHhhcCch---hhhHHHHHHHHHHhhhHH-HH
Confidence 457899999987754 567888899999999994 77
No 36
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.96 E-value=1.1e+02 Score=26.16 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcc
Q 022874 41 ALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSD 82 (291)
Q Consensus 41 eLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~ 82 (291)
.|.+-|++|+.-+.+-+.++.-++.--.+=.||+..|+.+|.
T Consensus 12 ~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lE 53 (112)
T PF07439_consen 12 TLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLE 53 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHH
Confidence 356677888888777666777777777788899999999995
No 37
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=24.17 E-value=26 Score=36.45 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHH-HHHhhcC-----cHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCC
Q 022874 26 NMEESV-RIRSDNE-----PMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGN 86 (291)
Q Consensus 26 ~~eES~-riRra~e-----PveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~~sn 86 (291)
++|+|+ |+|+--+ ==.+|.|+--.|.|+.+|.....+..+.||||+++=-+|+..|++-|.
T Consensus 416 RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~ 482 (495)
T PF12004_consen 416 RLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANS 482 (495)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhccccccccc
Confidence 346666 4444322 225789999999999999888888889999999999999999987444
No 38
>COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]
Probab=23.96 E-value=1.1e+02 Score=24.80 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHhhhcccCCChH--------HHHHHHHHHHHHHHHH
Q 022874 66 VKLRMIDEILRRLQSSDVKGNVS--------AQREAVESWRREKLEE 104 (291)
Q Consensus 66 ~kqk~a~ei~qRL~dl~~~sn~~--------~qr~AlE~WRkeKLe~ 104 (291)
++-++-+|+++|+|+++-|-+.. .-+.+-+-|+-|..|-
T Consensus 13 anvtvd~eL~e~Ar~~~lNiS~~~et~ia~e~~k~~t~~WqeEN~Ea 59 (80)
T COG5302 13 ANVTVDDELLERARALGLNISALAETAIAAELRKSATDRWQEENAEA 59 (80)
T ss_pred cceeecHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44566799999999998765521 2233456788887774
No 39
>PRK12704 phosphodiesterase; Provisional
Probab=23.39 E-value=1.7e+02 Score=30.38 Aligned_cols=10 Identities=40% Similarity=0.398 Sum_probs=5.7
Q ss_pred cccchHHHHH
Q 022874 116 NSTILQEEAR 125 (291)
Q Consensus 116 nst~~~eea~ 125 (291)
-|+++.|||+
T Consensus 147 ~a~lt~~ea~ 156 (520)
T PRK12704 147 ISGLTAEEAK 156 (520)
T ss_pred HhCCCHHHHH
Confidence 3556666654
No 40
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=22.93 E-value=71 Score=20.74 Aligned_cols=13 Identities=23% Similarity=0.838 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhh
Q 022874 95 ESWRREKLEEAKQ 107 (291)
Q Consensus 95 E~WRkeKLe~~k~ 107 (291)
+.|||.+|.+.|.
T Consensus 3 ~kwrkkrmrrlkr 15 (26)
T KOG4752|consen 3 AKWRKKRMRRLKR 15 (26)
T ss_pred hHHHHHHHHHHHH
Confidence 5799998887654
No 41
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.91 E-value=4.5e+02 Score=26.42 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHH
Q 022874 23 QIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILR 76 (291)
Q Consensus 23 Qir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~q 76 (291)
....+++|++-|. + +. .|+.|-++.++-..-....+.-+.-+.+++.+|.+
T Consensus 10 n~~~v~~~l~~R~-~-~~-~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 10 NPEAVKEALAKRG-F-PL-DVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred CHHHHHHHHHhcC-C-cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788998885 3 22 36666555555443222233334455666666655
No 42
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=22.06 E-value=1.5e+02 Score=30.53 Aligned_cols=48 Identities=23% Similarity=0.453 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHHH---HHhhhhccccccc
Q 022874 65 AVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLE---EAKQLSIGRQGIN 116 (291)
Q Consensus 65 ~~kqk~a~ei~qRL~dl~~~sn~~~qr~AlE~WRkeKLe---~~k~~~~~k~gsn 116 (291)
..++.+..+|+.|.++-+ +.+.|. .|.+|.+|+-+ -.|+.--++-||.
T Consensus 394 ~~w~q~lt~Ller~q~~r---seasq~-~L~ew~~eRq~lR~~tK~~FN~qFGs~ 444 (510)
T KOG2470|consen 394 QTWLQILTGLLERMQAQR---SEASQS-VLDEWMKERQELRDTTKQMFNAQFGST 444 (510)
T ss_pred HHHHHHHHHHHHHHHhhh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcce
Confidence 467888899999998843 455665 99999998754 2334334444443
No 43
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=21.68 E-value=1.9e+02 Score=24.97 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=52.5
Q ss_pred ehhhhHHhhhccccccCHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhccc
Q 022874 4 VILPFFFFQLCTVVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDV 83 (291)
Q Consensus 4 ~~~~~~~~~~~~~v~yt~~Qir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~ 83 (291)
.++|.+=|..... .|++++|.+.+=. -..+.-.+.-+.++.++.+.. .+.|.++++|- .+++++|+.|..
T Consensus 14 LvfPLLeFl~~~~-iy~~~dl~~akl~-----LL~~TnMvDy~~d~~~~l~~~---~e~p~e~~~kr-~~Vl~~l~~l~~ 83 (133)
T PF09440_consen 14 LVFPLLEFLSDKG-IYDEEDLLKAKLD-----LLKKTNMVDYAMDLYKELYPD---DEVPAELAEKR-EEVLAELKELEE 83 (133)
T ss_pred HHHHHHHHHhhcc-cccHHHHHHHHHH-----HHHhccchHHHHHHHHHhcCC---CCCcHHHHHHH-HHHHHHHHHHHH
Confidence 3678887776664 4999998877543 345677788889999999764 45888887774 467888988865
Done!