Query 022874
Match_columns 291
No_of_seqs 107 out of 116
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f83_A Coagulation factor XI; 94.6 0.035 1.2E-06 55.2 5.4 65 177-258 106-172 (625)
2 4a5v_A MIC4, micronemal protei 94.6 0.054 1.8E-06 45.8 5.8 67 168-258 70-138 (161)
3 2yil_A Microneme antigen L2; s 94.2 0.024 8.3E-07 47.5 2.8 65 168-257 68-133 (138)
4 2yil_A Microneme antigen L2; s 94.1 0.032 1.1E-06 46.8 3.3 58 177-257 5-62 (138)
5 4a5v_A MIC4, micronemal protei 93.7 0.092 3.1E-06 44.4 5.5 57 178-257 8-64 (161)
6 2f83_A Coagulation factor XI; 93.4 0.065 2.2E-06 53.3 4.7 65 177-257 16-82 (625)
7 2ll3_A Micronemal protein 4; c 47.1 10 0.00035 29.3 2.3 38 198-256 25-62 (82)
8 1upt_B Golgi autoantigen, golg 46.7 12 0.0004 27.8 2.4 26 11-36 28-53 (60)
9 3uo3_A J-type CO-chaperone JAC 39.4 79 0.0027 26.8 6.9 29 120-149 149-177 (181)
10 3qne_A Seryl-tRNA synthetase, 38.4 1.5E+02 0.0051 29.3 9.6 52 24-77 15-66 (485)
11 2dq0_A Seryl-tRNA synthetase; 38.1 1.1E+02 0.0038 29.5 8.5 54 23-76 10-63 (455)
12 1n81_A Plasmodium falciparum g 37.9 37 0.0013 29.8 4.6 27 60-86 67-93 (186)
13 1wle_A Seryl-tRNA synthetase; 33.0 1.8E+02 0.0063 28.6 9.2 56 22-77 48-103 (501)
14 3vgj_A Tyrosyl-tRNA synthetase 27.1 82 0.0028 29.7 5.4 52 46-107 317-368 (373)
15 2dq3_A Seryl-tRNA synthetase; 27.0 1.6E+02 0.0053 28.1 7.4 53 23-76 10-62 (425)
16 2zvf_A Alanyl-tRNA synthetase; 26.9 99 0.0034 25.0 5.3 17 39-55 27-43 (171)
17 2b5u_A Colicin E3; high resolu 26.8 92 0.0031 31.5 5.9 41 18-58 290-335 (551)
18 2el7_A Tryptophanyl-tRNA synth 26.2 3E+02 0.01 25.3 9.0 35 45-82 252-286 (337)
19 4aj5_K Spindle and kinetochore 25.2 73 0.0025 26.5 4.1 19 37-55 43-61 (123)
20 3hms_A Hepatocyte growth facto 24.8 62 0.0021 25.7 3.5 30 200-234 37-67 (101)
21 3ggz_E Vacuolar protein-sortin 21.5 33 0.0011 22.1 1.1 11 72-82 18-28 (29)
22 3r8n_M 30S ribosomal protein S 21.4 1.3E+02 0.0044 24.3 4.8 41 16-83 44-84 (114)
23 2cya_A Tyrosyl-tRNA synthetase 20.9 1.6E+02 0.0054 27.5 6.0 35 46-83 309-343 (364)
24 3eab_G CHMP1B; spastin, MIT, E 20.4 40 0.0014 23.6 1.4 13 71-83 38-50 (50)
25 4fla_A Regulation of nuclear P 20.1 76 0.0026 26.7 3.4 20 38-57 23-42 (152)
No 1
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=94.58 E-value=0.035 Score=55.23 Aligned_cols=65 Identities=20% Similarity=0.454 Sum_probs=48.1
Q ss_pred CCCcccc--cccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccc
Q 022874 177 PPPECHA--ELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK 254 (291)
Q Consensus 177 ~~~~C~~--e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK 254 (291)
.++.|+. ..++||.|.-+.- ....|+++||..|.++ .+|-.|.|=....- + ....+.||||
T Consensus 106 ~~~~C~~~~~~~~d~~G~d~~~---~~~~s~~~C~~~C~~~--------~~C~~fTy~~~~~~--~----~~~~~~C~LK 168 (625)
T 2f83_A 106 QISACNKDIYVDLDMKGINYNS---SVAKSAQECQERCTDD--------VHCHFFTYATRQFP--S----LEHRNICLLK 168 (625)
T ss_dssp CCCCCCCCCEEEEEEECEEEEE---EECSCHHHHHHHHHTS--------SSCSEEEEECSSCS--C----SSSTTEEEEE
T ss_pred ChhcCchhhccccceecceeee---EeeCCHHHHHHhccCC--------CCCcEEEecCCccc--C----CCCCceeEec
Confidence 4557864 5899999976642 5678999999999984 68999999775421 1 1245789999
Q ss_pred ccCC
Q 022874 255 YAEK 258 (291)
Q Consensus 255 ~~~~ 258 (291)
....
T Consensus 169 ~s~~ 172 (625)
T 2f83_A 169 HTQT 172 (625)
T ss_dssp ECSS
T ss_pred cCcC
Confidence 9754
No 2
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Probab=94.56 E-value=0.054 Score=45.81 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=48.9
Q ss_pred ccccCCC-CCCCCccccccccccccc-ccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccC
Q 022874 168 DEDVLPG-RPPPPECHAELHTDYDGV-AIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYE 245 (291)
Q Consensus 168 ~~~~~~g-~p~~~~C~~e~htdy~G~-aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~ 245 (291)
..+++-| +.-++.|+. .++||.|. -|. ......++.+|+++|.+ +.+|..|+|=.
T Consensus 70 ~~g~iSG~k~C~~~C~~-~~vD~~G~~dl~--~~~~~~s~~~Cq~~C~~--------~~~C~~fTy~~------------ 126 (161)
T 4a5v_A 70 LTGGKTASRSCDRSCFE-QHVSYEGAPDVM--TAMVTSQSADCQAACAA--------DPSCEIFTYNE------------ 126 (161)
T ss_dssp CTTEEEEESCCCCTTCE-ESEEECSSCBSS--CCCBCSCHHHHHHHHHH--------CTTCCEEEEET------------
T ss_pred cCCceeCCCcCCcchhh-CCCcccCchhcc--ccccCCCHHHHHHHccc--------CCCCCEEEeeC------------
Confidence 3455555 222246776 89999998 442 33567899999999998 46899999973
Q ss_pred CCCCcccccccCC
Q 022874 246 HKYQECWLKYAEK 258 (291)
Q Consensus 246 ~~~geCWLK~~~~ 258 (291)
..+.||||....
T Consensus 127 -~~~~C~LK~~~~ 138 (161)
T 4a5v_A 127 -HDQKCTFKGRGF 138 (161)
T ss_dssp -TTTEEEEECTTT
T ss_pred -CCCeeEeCCCCC
Confidence 357999998865
No 3
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Probab=94.16 E-value=0.024 Score=47.51 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=48.3
Q ss_pred ccccCCCCCC-CCcccccccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCC
Q 022874 168 DEDVLPGRPP-PPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEH 246 (291)
Q Consensus 168 ~~~~~~g~p~-~~~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~ 246 (291)
..+++.|... .+.| .+.+.||.|..+.- ......|+.+|.++|.+ +.+|..|.|=.
T Consensus 68 ~~g~vSGpk~C~~~C-~~~~vdy~G~d~~~-~~~s~~~a~~CQ~~C~~--------~~~C~~fTf~~------------- 124 (138)
T 2yil_A 68 YTGDMTGPRSCEHNC-SDACWMDGNNPLAV-WDYSGQPPALCWAACMG--------TPGCDLYTFQG------------- 124 (138)
T ss_dssp CTTEEEEESCTTCCC-CSSEETTCCCCSEE-EECTTCCTHHHHHHHHT--------STTCCEEECGG-------------
T ss_pred cCCceecCCcCcccH-HhcCCCccCccccc-cccccCCHHHHHHHhCC--------CCCCcEEEEeC-------------
Confidence 4567777332 3467 68999999987754 33344689999999998 46899999854
Q ss_pred CCCcccccccC
Q 022874 247 KYQECWLKYAE 257 (291)
Q Consensus 247 ~~geCWLK~~~ 257 (291)
+.||||..+
T Consensus 125 --~tC~lk~~d 133 (138)
T 2yil_A 125 --MTCKLYSQT 133 (138)
T ss_dssp --GEEEEECCC
T ss_pred --CeeEEECCc
Confidence 489999764
No 4
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*
Probab=94.07 E-value=0.032 Score=46.78 Aligned_cols=58 Identities=24% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCCcccccccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccccc
Q 022874 177 PPPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 256 (291)
Q Consensus 177 ~~~~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK~~ 256 (291)
++-.|- +|...+|..+.--..-.+.|+++|.+.|+++ .+|..|.|=.+ -+.||||..
T Consensus 5 ~~~~c~--~h~~n~G~~~~~i~~~~v~Sa~~Cq~~C~~~--------~~C~~FTf~~~-------------~k~C~LK~~ 61 (138)
T 2yil_A 5 LDVSCF--AHDKNIGSRTEQLSVVHVASAQDCMKECQAL--------PTCSHFTYNKN-------------SKKCHLKAG 61 (138)
T ss_dssp CCCTTS--CSSSCEEECSCEEEEEECSSHHHHHHHHHHS--------TTCCEEEEETT-------------TCEEEEECS
T ss_pred eeeeee--cccCccCcchhcccccCCCCHHHHHHHccCC--------CCCCEEEEECC-------------CCEEEeccC
Confidence 344454 2344445544322345679999999999985 58999999554 268999975
Q ss_pred C
Q 022874 257 E 257 (291)
Q Consensus 257 ~ 257 (291)
.
T Consensus 62 ~ 62 (138)
T 2yil_A 62 A 62 (138)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Probab=93.71 E-value=0.092 Score=44.38 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=45.3
Q ss_pred CCcccccccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCcccccccC
Q 022874 178 PPECHAELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYAE 257 (291)
Q Consensus 178 ~~~C~~e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK~~~ 257 (291)
.-.|--..|+.|.|-.| +......|+.+||..|..+ .+|..|+|=.. .+.||||...
T Consensus 8 ~~~c~~~~n~~~~g~~i--~~~~~~~s~~~Cq~~C~~~--------p~C~~fTf~~~-------------~~~C~LK~s~ 64 (161)
T 4a5v_A 8 DLSCVHSDNKGSRAPTI--GEPVPDVSLEQCAAQCKAV--------DGCTHFTYNDD-------------SKMCHVKEGK 64 (161)
T ss_dssp CCSSCCCSSEEECSCBC--SCCBTTCCHHHHHHHHHHS--------TTCSEEEEETT-------------TCCEEEECSS
T ss_pred ceeEEcCCCccccCCCe--eeeecCCCHHHHHHHCcCC--------CCCcEEEEECC-------------CCEEEEeCCC
Confidence 34677777888887776 3566889999999999995 58999999743 4789999765
No 6
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=93.35 E-value=0.065 Score=53.25 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=45.5
Q ss_pred CCCcccc--cccccccccccccCCccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccc
Q 022874 177 PPPECHA--ELHTDYDGVAIRWGLTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLK 254 (291)
Q Consensus 177 ~~~~C~~--e~htdy~G~aV~WG~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK 254 (291)
+...|.. ..++||.|..+. .-...+|++||..|..+ .+|..|.|=....+=.+ .+..-||||
T Consensus 16 ~~~~c~~~~~~~~d~~G~d~~---~v~~~~~~~C~~~C~~~--------~~C~~ft~~~~~~~~~~-----~~~~~C~LK 79 (625)
T 2f83_A 16 VSGECVTQLLKDTCFEGGDIT---TVFTPSAKYCQVVCTYH--------PRCLLFTFTAESPSEDP-----TRWFTCVLK 79 (625)
T ss_dssp ----CCCSCEEEEEECSCEEE---EEECSSHHHHHHHHHHS--------SSCCEEEEECCCTTSCS-----TTTTEEEEE
T ss_pred hccchhhhhcccccccCCcee---EEecCCHHHHHHhccCC--------CCeeEEEEeCCCCCccc-----cccceEEec
Confidence 4556754 589999999876 33457899999999995 58999999987532111 134579999
Q ss_pred ccC
Q 022874 255 YAE 257 (291)
Q Consensus 255 ~~~ 257 (291)
...
T Consensus 80 ~~~ 82 (625)
T 2f83_A 80 DSV 82 (625)
T ss_dssp CCG
T ss_pred ccc
Confidence 754
No 7
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*
Probab=47.08 E-value=10 Score=29.28 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=30.6
Q ss_pred CccccCCHHHHHHHHHHhhhhcCCCCCCCceeEECCCCCCCCCCCccCCCCCccccccc
Q 022874 198 LTHHRDSAADCCQACIEQAKRAKPGQMKCNIWVYCPAETGCHSPDKYEHKYQECWLKYA 256 (291)
Q Consensus 198 ~~~~~~SA~eCC~AC~~~~~~~~~g~~~CNvWVfC~d~~GC~spd~y~~~~geCWLK~~ 256 (291)
..-...|.++|..+|+. ...|..++|-... +-|+||..
T Consensus 25 ~~~~~~sl~~Cq~aC~a--------~~~C~aFTyN~~s-------------~~CflKs~ 62 (82)
T 2ll3_A 25 EVKRASSLSECRARCQA--------EKECSHYTYNVKS-------------GLCYPKRG 62 (82)
T ss_dssp SCEECSSHHHHHHHHHH--------CTTEEEEEEETTT-------------TEEEEEES
T ss_pred ccccCCCHHHHHHHhhc--------cCCCCeEEeccCC-------------CceEcccC
Confidence 34467889999999998 4689999998763 68999964
No 8
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=46.71 E-value=12 Score=27.78 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.3
Q ss_pred hhhccccccCHHHHHHHHHHHHHHhh
Q 022874 11 FQLCTVVKYTPDQIRNMEESVRIRSD 36 (291)
Q Consensus 11 ~~~~~~v~yt~~Qir~~eES~riRra 36 (291)
-+++.|.+|+++|.++|-+.+.-|..
T Consensus 28 kaI~avL~Fs~~e~q~il~~e~~r~~ 53 (60)
T 1upt_B 28 KVITTVLKFPDDQTQKILEREDARLM 53 (60)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccc
Confidence 45677899999999999999988864
No 9
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=39.40 E-value=79 Score=26.85 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHhhhhHHHHHhhccccCce
Q 022874 120 LQEEARMLVRVLESDWAALSEEIGLWIPTE 149 (291)
Q Consensus 120 ~~eea~~l~~~~e~~w~~~~e~ig~w~p~~ 149 (291)
..++|..+++-|-+ |..|.++|--|-|.-
T Consensus 149 d~~~A~~~~~kL~y-~~kl~~~ik~we~g~ 177 (181)
T 3uo3_A 149 DYAAAVKLTVELKY-WYNLAKAFKDWAPGK 177 (181)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHTCCTTC
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHhcCCCC
Confidence 55889999999998 999999999999753
No 10
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.41 E-value=1.5e+02 Score=29.26 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHH
Q 022874 24 IRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRR 77 (291)
Q Consensus 24 ir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qR 77 (291)
...++++.+-|.. ++++|..|.+|.++-..-....+.-+.-+..++.+|.+.
T Consensus 15 ~~~v~~~~~~R~~--~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 15 PEIIKASQKKRGD--SVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHTC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888764 456677777776654433223333345566677777653
No 11
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.10 E-value=1.1e+02 Score=29.54 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHH
Q 022874 23 QIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILR 76 (291)
Q Consensus 23 Qir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~q 76 (291)
....+.++.+-|.....++++..|.++.++...-....+.-+.-+.+++.+|.+
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888742216677887777766655433444445566677777766
No 12
>1n81_A Plasmodium falciparum gamete antigen 27/25; gametocyte, helical, helix-turn-helix, PXXP, unknown functio; 2.10A {Plasmodium falciparum} SCOP: a.185.1.1
Probab=37.92 E-value=37 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.9
Q ss_pred ccccHHHHhHHHHHHHHHhhhcccCCC
Q 022874 60 FELPRAVKLRMIDEILRRLQSSDVKGN 86 (291)
Q Consensus 60 ~~lp~~~kqk~a~ei~qRL~dl~~~sn 86 (291)
..||.++|-.+|.-|+.||+|+...-.
T Consensus 67 ~~lp~ei~dsmalRISdRLr~ycfdk~ 93 (186)
T 1n81_A 67 FLIEERVQDNIVNRISDRLISYCTDKE 93 (186)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHccch
Confidence 789999999999999999999988665
No 13
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.04 E-value=1.8e+02 Score=28.59 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHH
Q 022874 22 DQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRR 77 (291)
Q Consensus 22 ~Qir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qR 77 (291)
+....+.++.+-|+.-.++.+|..|.++.++...-....+--+.-+.+++.+|.+.
T Consensus 48 ~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 48 AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788787543456677777776655443333344455566666676653
No 14
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=27.14 E-value=82 Score=29.71 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHHHHHhh
Q 022874 46 VNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDVKGNVSAQREAVESWRREKLEEAKQ 107 (291)
Q Consensus 46 VKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~~sn~~~qr~AlE~WRkeKLe~~k~ 107 (291)
+.+|++++..+. -.|.++|+.+++.|...|.-++. -++..++|+ +.|+++|+
T Consensus 317 ~eel~~~~~~g~---l~~~dlK~~lae~i~~~l~Pire------~~~~~~~~~-~~l~~v~~ 368 (373)
T 3vgj_A 317 LQELEHDYVNGF---IHPLDLKDNVAMYINKLLQPVRD------HFQNNIEAK-NLLNEIKK 368 (373)
T ss_dssp HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHHHH------HHHHCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHH------HHHhChhHH-HHHHHHHh
Confidence 455666655431 25899999999999999998863 223345564 45666666
No 15
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.95 E-value=1.6e+02 Score=28.11 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHH
Q 022874 23 QIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILR 76 (291)
Q Consensus 23 Qir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~q 76 (291)
....+.++.+-|..-. ++++..|.++.++...-....+.-+.-+.+++.+|.+
T Consensus 10 ~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 10 KPDYVKERLATRDKEL-VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp CHHHHHHHHTTTCGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred CHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777887776421 6677777777766554333333334444555555443
No 16
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.91 E-value=99 Score=24.95 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHhhhc
Q 022874 39 PMALVKLVNGLKQEFSR 55 (291)
Q Consensus 39 PveLI~rVKei~~E~~~ 55 (291)
|-+|.++|..|+.|...
T Consensus 27 ~~~l~~~v~~l~~e~k~ 43 (171)
T 2zvf_A 27 PAKLPKTVERFFEEWKD 43 (171)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66999999998888664
No 17
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=26.79 E-value=92 Score=31.55 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=29.0
Q ss_pred ccCHHHH-HHHHHHHHHHhhc---CcHHHHHH-HHHHHHhhhcccc
Q 022874 18 KYTPDQI-RNMEESVRIRSDN---EPMALVKL-VNGLKQEFSRDES 58 (291)
Q Consensus 18 ~yt~~Qi-r~~eES~riRra~---ePveLI~r-VKei~~E~~~e~~ 58 (291)
-+|++|+ +++||++|.+++. .|++--+| .-+++.|+...++
T Consensus 290 ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k 335 (551)
T 2b5u_A 290 VLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANE 335 (551)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 3678888 6899999999876 78777665 3345566665555
No 18
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=26.25 E-value=3e+02 Score=25.31 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhcc
Q 022874 45 LVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSD 82 (291)
Q Consensus 45 rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~ 82 (291)
-+.+|++++..+ .-.+.++|+.+|++|...|+..+
T Consensus 252 ~i~~l~~~~~~g---~~~~~~~K~~La~~i~~~l~p~r 286 (337)
T 2el7_A 252 LVEALKEEYRKA---GVGTYVVKRILFDHLMEALRPIR 286 (337)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhHHH
Confidence 445566555542 23688999999999999999885
No 19
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.19 E-value=73 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=16.4
Q ss_pred cCcHHHHHHHHHHHHhhhc
Q 022874 37 NEPMALVKLVNGLKQEFSR 55 (291)
Q Consensus 37 ~ePveLI~rVKei~~E~~~ 55 (291)
..||.|+++++.|+.+...
T Consensus 43 ~NPv~Ll~~LsaIk~ry~~ 61 (123)
T 4aj5_K 43 KNPVTLLKELSVIKSRYQT 61 (123)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 4899999999999988764
No 20
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A
Probab=24.81 E-value=62 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.664 Sum_probs=22.6
Q ss_pred cccCCHHHHHHHHHHhhhhcCCC-CCCCceeEECCC
Q 022874 200 HHRDSAADCCQACIEQAKRAKPG-QMKCNIWVYCPA 234 (291)
Q Consensus 200 ~~~~SA~eCC~AC~~~~~~~~~g-~~~CNvWVfC~d 234 (291)
-.+.|+++|...|..- -| +..|-+|.|=..
T Consensus 37 ~~~~s~eeCA~kC~~~-----~~~~F~CRAF~y~~k 67 (101)
T 3hms_A 37 KKVNTADQCANRCTRN-----KGLPFTCKAFVFDKA 67 (101)
T ss_dssp EECSCHHHHHHHHHHC-----TTCSSCCCEEEEETT
T ss_pred eccCCHHHHHHHHHhc-----cCCCcceeeeEEecC
Confidence 3567999999999982 11 468999988654
No 21
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=21.47 E-value=33 Score=22.10 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=9.5
Q ss_pred HHHHHHhhhcc
Q 022874 72 DEILRRLQSSD 82 (291)
Q Consensus 72 ~ei~qRL~dl~ 82 (291)
|-|+||||-|+
T Consensus 18 DkLAqRLRALR 28 (29)
T 3ggz_E 18 DKLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHHc
Confidence 67999999886
No 22
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=21.44 E-value=1.3e+02 Score=24.28 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=27.7
Q ss_pred ccccCHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhccc
Q 022874 16 VVKYTPDQIRNMEESVRIRSDNEPMALVKLVNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDV 83 (291)
Q Consensus 16 ~v~yt~~Qir~~eES~riRra~ePveLI~rVKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~ 83 (291)
+-.+|++||.++.+-+ ..+ ..+.+++.++.++| +||++++.
T Consensus 44 ~~~Lt~~ei~~l~~~i---~~~-----------------------~ie~dLr~~~~~dI-~RL~~I~~ 84 (114)
T 3r8n_M 44 ISELSEGQIDTLRDEV---AKF-----------------------VVEGDLRREISMSI-KRLMDLGC 84 (114)
T ss_dssp STTCCHHHHHHHHHHH---SSS-----------------------CTTHHHHHHHHHHH-HHHHHHTC
T ss_pred cccCCHHHHHHHHHHH---HHh-----------------------cchHHHHHHHHHHH-HHHHHhce
Confidence 3457888888887765 111 13468888888876 67887763
No 23
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=20.88 E-value=1.6e+02 Score=27.52 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=26.1
Q ss_pred HHHHHHhhhcccccccccHHHHhHHHHHHHHHhhhccc
Q 022874 46 VNGLKQEFSRDESVFELPRAVKLRMIDEILRRLQSSDV 83 (291)
Q Consensus 46 VKei~~E~~~e~~~~~lp~~~kqk~a~ei~qRL~dl~~ 83 (291)
+.+|++++..+ .-.|.++|+.+|++|...|+..+.
T Consensus 309 ~~el~~~~~~g---~~~~~~lK~~la~~l~~~l~pir~ 343 (364)
T 2cya_A 309 YEELERDYTDG---RLHPLDLKNAVAESLIEVVRPIRG 343 (364)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45565555542 236889999999999999998863
No 24
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=20.40 E-value=40 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=10.9
Q ss_pred HHHHHHHhhhccc
Q 022874 71 IDEILRRLQSSDV 83 (291)
Q Consensus 71 a~ei~qRL~dl~~ 83 (291)
-|+|++||+.|+.
T Consensus 38 eD~L~~RLaaLR~ 50 (50)
T 3eab_G 38 QDELSQRLARLRD 50 (50)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhC
Confidence 6899999999973
No 25
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.12 E-value=76 Score=26.68 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHHHHhhhccc
Q 022874 38 EPMALVKLVNGLKQEFSRDE 57 (291)
Q Consensus 38 ePveLI~rVKei~~E~~~e~ 57 (291)
+|-+||+.+..||.-++++.
T Consensus 23 ~~~elik~L~~le~sassDa 42 (152)
T 4fla_A 23 LTEELIKALQDLENAASGDA 42 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccccchH
Confidence 57799999999999998874
Done!