Query 022875
Match_columns 291
No_of_seqs 231 out of 1100
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022875.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022875hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02707 Soluble inorganic pyr 100.0 7.5E-93 1.6E-97 657.6 26.7 252 40-291 16-267 (267)
2 KOG1626 Inorganic pyrophosphat 100.0 2.8E-86 6E-91 605.8 19.5 228 55-283 2-235 (279)
3 PRK00642 inorganic pyrophospha 100.0 3.3E-66 7.2E-71 465.0 20.5 193 77-279 5-204 (205)
4 PLN02373 soluble inorganic pyr 100.0 5.1E-63 1.1E-67 439.1 18.8 178 80-283 8-186 (188)
5 PRK01250 inorganic pyrophospha 100.0 3.2E-59 7E-64 411.3 18.0 170 82-277 1-175 (176)
6 PF00719 Pyrophosphatase: Inor 100.0 1.6E-56 3.5E-61 387.4 14.3 155 97-277 1-156 (156)
7 PRK02230 inorganic pyrophospha 100.0 7E-56 1.5E-60 392.2 16.2 166 94-287 3-169 (184)
8 cd00412 pyrophosphatase Inorga 100.0 2.9E-55 6.3E-60 379.4 15.8 154 94-273 1-155 (155)
9 COG0221 Ppa Inorganic pyrophos 100.0 3.5E-53 7.6E-58 371.4 16.1 170 82-277 1-171 (171)
10 KOG1626 Inorganic pyrophosphat 77.6 2.9 6.2E-05 39.9 3.9 136 81-232 38-187 (279)
11 PF00076 RRM_1: RNA recognitio 61.0 15 0.00032 25.6 3.8 50 221-273 4-61 (70)
12 PRK03760 hypothetical protein; 49.1 12 0.00026 31.3 1.9 43 71-114 63-108 (117)
13 PF02643 DUF192: Uncharacteriz 33.3 7.8 0.00017 31.6 -1.5 43 70-113 51-99 (108)
14 PF07177 Neuralized: Neuralize 33.3 40 0.00086 25.6 2.5 21 169-189 30-50 (69)
15 smart00588 NEUZ domain in neur 29.7 62 0.0013 27.1 3.3 44 164-214 26-72 (123)
16 PF14575 EphA2_TM: Ephrin type 25.9 19 0.0004 27.9 -0.5 10 145-154 56-65 (75)
17 cd09030 DUF1425 Putative perip 24.5 60 0.0013 25.8 2.2 31 62-92 45-79 (101)
18 COG1430 Uncharacterized conser 23.0 1.2E+02 0.0027 25.8 3.9 41 71-112 66-111 (126)
19 cd01460 vWA_midasin VWA_Midasi 22.1 40 0.00086 32.1 0.8 27 212-241 237-263 (266)
20 PF08437 Glyco_transf_8C: Glyc 21.4 48 0.001 24.4 1.0 12 80-91 12-23 (57)
21 PF04425 Bul1_N: Bul1 N termin 20.5 64 0.0014 33.0 2.0 46 132-185 215-263 (438)
No 1
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=7.5e-93 Score=657.56 Aligned_cols=252 Identities=82% Similarity=1.304 Sum_probs=246.0
Q ss_pred ecccccceeccccccceeEEEecCCCCcceEEEEEcCCCCccCCCCCCCCCCCCCeeEEEEEeCCCCCceEEEeccCCCC
Q 022875 40 FPSKRLFSCRAIYNPQVQITEEGQPETLDYRVFFVNNSGKKVSPWHDIPLQLGDGVFNFVVEIPKESSAKMEVATDELYT 119 (291)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~G~~~t~~~r~~~~~~~g~~~SpwHDIPl~~~~~~~n~VVEIPrgS~aKyEi~k~~~~n 119 (291)
..++|.++|.+++.+.|+++++|+++|++||+||++.+|+++|||||||++..+++|||||||||||++||||++++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~G~~~t~~~r~~~~~~~g~~~spwHdIpl~~~~~~vn~VVEIPrgs~~KyEidk~~~~n 95 (267)
T PLN02707 16 PVSRRLFSCASAVNAAYAVEEEGEAETLDYRVFFSDGSGKKVSPWHDIPLHAGDGTFNFVVEIPKETSAKMEVATDEPFT 95 (267)
T ss_pred cccccceeehhhhccceeEEeecCCCCcceEEEEECCCCCccCchhcCCCCCCCCEEEEEEEECCCCceeEEECccCCCC
Confidence 35678999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred ceeeeccCCeeeEeccccccccCccccccCCCCcCCcccCCCCCCCCcceEEEecCcccCCceEEEEEEceeEEeeeCCc
Q 022875 120 PIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVEGAFGDNDPVDVVEIGERRRKIGEILRVKPLSALAMIDEGE 199 (291)
Q Consensus 120 pI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~g~~gDgDPLDVlvig~~~~~~G~v~~vrvlGvL~miDeGE 199 (291)
||+||+++|++|+||++|||||||||||||||++.+++.+|+.||||||||||||+.++.||+|++|||||+|+|||+||
T Consensus 96 pi~qD~~~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE 175 (267)
T PLN02707 96 PIKQDTKKGKLRDYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGE 175 (267)
T ss_pred CEEEeeecCceEECCCcCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCC
Confidence 99999999999999999999999999999999999999778999999999999999999999999999999999999999
Q ss_pred cceEEEEEeCCCccccCCCCcccccccChhHHHHHHHHHHhccCCCCCcceEeecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 022875 200 LDWKIVAISLDDPKAALVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLGNKAADKDYALKVITETNESWAKLV 279 (291)
Q Consensus 200 ~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wFr~YK~~eGK~~n~~g~~~~~~~~~~A~~vI~e~~~~~~~l~ 279 (291)
+|||||||+++||+|++|||++||++++||+|++|+|||++||.++||++|+||+++++.|+++|+++|++||++|++|+
T Consensus 176 ~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y~~l~ 255 (267)
T PLN02707 176 LDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLV 255 (267)
T ss_pred CCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCcccC
Q 022875 280 KRSIEAGELSLV 291 (291)
Q Consensus 280 ~~~~~~~~~~~~ 291 (291)
+|++++++|+++
T Consensus 256 ~~~~~~~~~~~~ 267 (267)
T PLN02707 256 KRSIPAGELSLV 267 (267)
T ss_pred ccCCCCCCcccC
Confidence 999999999875
No 2
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=2.8e-86 Score=605.78 Aligned_cols=228 Identities=53% Similarity=0.937 Sum_probs=223.6
Q ss_pred ceeEEEecCCCCcceEEEEEcCCCCccCCCCCCCCCCC-CCeeEEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeE-
Q 022875 55 QVQITEEGQPETLDYRVFFVNNSGKKVSPWHDIPLQLG-DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRY- 132 (291)
Q Consensus 55 ~~~~~~~G~~~t~~~r~~~~~~~g~~~SpwHDIPl~~~-~~~~n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~- 132 (291)
.|+++++|+.+|++||+||...+|+++||||||||.++ ..++|||||||||+++||||++++++|||+||.|+|++||
T Consensus 2 ~~~t~e~g~~~s~~~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v 81 (279)
T KOG1626|consen 2 QYETVETGKKYSLDYRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFV 81 (279)
T ss_pred cceeeeccccCCccceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEE
Confidence 68999999999999999999999999999999999988 6899999999999999999999999999999999999999
Q ss_pred ---eccc-cccccCccccccCCCCcCCcccCCCCCCCCcceEEEecCcccCCceEEEEEEceeEEeeeCCccceEEEEEe
Q 022875 133 ---YPYN-INWNYGLFPQTWEDPSFANSEVEGAFGDNDPVDVVEIGERRRKIGEILRVKPLSALAMIDEGELDWKIVAIS 208 (291)
Q Consensus 133 ---yP~~-~~~NYGfIPqTwedp~~~~~~~~g~~gDgDPLDVlvig~~~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~ 208 (291)
||+. |+|||||||||||||+|.+++ |||.||||||||||||+++..+|++++||+||+|+||||||+|||||||+
T Consensus 82 ~n~fp~~gYiwNYGalPqTwedP~~~~~~-t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAId 160 (279)
T KOG1626|consen 82 RNLFPYKGYIWNYGALPQTWEDPNHVDPE-TKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAID 160 (279)
T ss_pred EecccccccccccccCcccccCCCccccc-ccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEE
Confidence 9995 999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccccccChhHHHHHHHHHHhccCCCCCcceEeecCCCCCCHHHHHHHHHHHHHHHHHHhcCcc
Q 022875 209 LDDPKAALVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLGNKAADKDYALKVITETNESWAKLVKRSI 283 (291)
Q Consensus 209 ~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wFr~YK~~eGK~~n~~g~~~~~~~~~~A~~vI~e~~~~~~~l~~~~~ 283 (291)
++||+++++|||+||++++||+|++|++|||.||+||||+.|.|+|+|+++++++|+++|++||+.|+.|+.++.
T Consensus 161 vnDP~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 161 VNDPLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred CCCcchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876
No 3
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=3.3e-66 Score=464.98 Aligned_cols=193 Identities=26% Similarity=0.384 Sum_probs=170.7
Q ss_pred CCCccCCCCCCCCCCC-CCeeEEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCC
Q 022875 77 SGKKVSPWHDIPLQLG-DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFAN 155 (291)
Q Consensus 77 ~g~~~SpwHDIPl~~~-~~~~n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~ 155 (291)
++..+|||||||++.+ ++.+||||||||||++||||+++++.. +.|+ +++++..||||||||||||+||++.+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~--~ldr----~l~~~~~yP~nYGfIPqT~~dp~~~~ 78 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYL--KVDR----PQKFSNFCPALYGFIPRTYCGDLSGK 78 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCce--EEee----ecccCCcCCcccCcCcccccCccccc
Confidence 4567899999999865 689999999999999999999988754 4454 44555556679999999999999876
Q ss_pred cc-----cCCCCCCCCcceEEEecCcccCCceE-EEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCcccccccChh
Q 022875 156 SE-----VEGAFGDNDPVDVVEIGERRRKIGEI-LRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKHFPG 229 (291)
Q Consensus 156 ~~-----~~g~~gDgDPLDVlvig~~~~~~G~v-~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg 229 (291)
.. .+++.|||||||||||++.++++|++ ++|||||+|+|+|+||+|||||||+++||+|++|||++||++ +
T Consensus 79 ~~~~~~~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~---~ 155 (205)
T PRK00642 79 LSGEQSGREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPG---T 155 (205)
T ss_pred ccccccccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCH---H
Confidence 53 35778999999999999999999996 799999999999999999999999999999999999999985 5
Q ss_pred HHHHHHHHHHhccCCCCCcceEeecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 022875 230 TLTAIRDWFRDYKIPDGKPANKFGLGNKAADKDYALKVITETNESWAKLV 279 (291)
Q Consensus 230 ~l~~i~~wFr~YK~~eGK~~n~~g~~~~~~~~~~A~~vI~e~~~~~~~l~ 279 (291)
++++|+|||++||.++||+.|.+.++| +.++++|+++|++||++|++++
T Consensus 156 ~l~~I~~fF~~YK~legk~~k~~~~~g-~~~~~~A~~vI~~~~~~y~~~~ 204 (205)
T PRK00642 156 LLDRLQHYFLTYKATPGELIKGVEIVG-IYGKEEAQKVIQLAHEDYANKF 204 (205)
T ss_pred HHHHHHHHHHHHcCcccCCCCeEEECC-CcCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999998877666665 5589999999999999999864
No 4
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=5.1e-63 Score=439.14 Aligned_cols=178 Identities=33% Similarity=0.516 Sum_probs=163.1
Q ss_pred ccCCCCCCCCCCC-CCeeEEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCCccc
Q 022875 80 KVSPWHDIPLQLG-DGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEV 158 (291)
Q Consensus 80 ~~SpwHDIPl~~~-~~~~n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~ 158 (291)
.+|||||||+++. ++.+||||||||||++|||++++++ .|+||+.......|| ||||||||||+
T Consensus 8 ~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g--~i~~Dr~l~~~~~yP----~nYGfIP~T~~--------- 72 (188)
T PLN02373 8 AAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTG--LIKVDRVLYSSVVYP----HNYGFIPRTLC--------- 72 (188)
T ss_pred cCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCC--CEEEeeecccCCcCC----ccccccccccc---------
Confidence 4899999999854 6899999999999999999999875 699998655444455 59999999997
Q ss_pred CCCCCCCCcceEEEecCcccCCceEEEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCcccccccChhHHHHHHHHH
Q 022875 159 EGAFGDNDPVDVVEIGERRRKIGEILRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKHFPGTLTAIRDWF 238 (291)
Q Consensus 159 ~g~~gDgDPLDVlvig~~~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wF 238 (291)
|||||||||||++.++.||++++|||||+|+|+|+||.|||||||+++||+|++|+|++||++ +++++|+|||
T Consensus 73 ----~DgDPLDvlvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~---~~l~~I~~fF 145 (188)
T PLN02373 73 ----EDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPP---HRLAEIRRFF 145 (188)
T ss_pred ----CCCCccEEEEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCH---HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 4899999999
Q ss_pred HhccCCCCCcceEeecCCCCCCHHHHHHHHHHHHHHHHHHhcCcc
Q 022875 239 RDYKIPDGKPANKFGLGNKAADKDYALKVITETNESWAKLVKRSI 283 (291)
Q Consensus 239 r~YK~~eGK~~n~~g~~~~~~~~~~A~~vI~e~~~~~~~l~~~~~ 283 (291)
++||.++||+++..||. ++++|+++|++||++|++++..+.
T Consensus 146 ~~YK~legK~v~v~g~~----~~~~A~~~I~~~~~~y~~~~~~~~ 186 (188)
T PLN02373 146 EDYKKNENKEVAVNDFL----PAEAAIEAIQYSMDLYAEYIVESL 186 (188)
T ss_pred HHhcccCCCeEEeCCcc----CHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988887 599999999999999999876543
No 5
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=3.2e-59 Score=411.28 Aligned_cols=170 Identities=31% Similarity=0.426 Sum_probs=155.8
Q ss_pred CCCCCCCCC-CCCCeeEEEEEeCCCCC-ceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCCcccC
Q 022875 82 SPWHDIPLQ-LGDGVFNFVVEIPKESS-AKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVE 159 (291)
Q Consensus 82 SpwHDIPl~-~~~~~~n~VVEIPrgS~-aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~ 159 (291)
.+||+||.+ ..++.|||||||||||+ +|||++++++ .+++|+.....++||+ |||||||||+
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g--~~~~dR~l~~~~~yP~----nYGfIP~T~~---------- 64 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESG--ALFVDRFLYTAMFYPC----NYGFIPHTLS---------- 64 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCC--CEEEeeccCCCCcCCc----CcccCCCccc----------
Confidence 369999998 45799999999999999 8999998864 7899976555555554 9999999998
Q ss_pred CCCCCCCcceEEEecCcccCCceEEEEEEceeEEeeeCCccceEEEEEeCC--CccccCCCCcccccccChhHHHHHHHH
Q 022875 160 GAFGDNDPVDVVEIGERRRKIGEILRVKPLSALAMIDEGELDWKIVAISLD--DPKAALVNDVDDVEKHFPGTLTAIRDW 237 (291)
Q Consensus 160 g~~gDgDPLDVlvig~~~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~--Dp~~~~indi~Dv~~~~Pg~l~~i~~w 237 (291)
|||||||||||++.++.||++++|||||+|+|+|+||.|||||||+++ ||++++|+|++||+++ ++++|+||
T Consensus 65 ---~DgDPLDvlvl~~~~~~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~---~l~eI~~f 138 (176)
T PRK01250 65 ---LDGDPVDVLVVTPYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPEL---LKAQIKHF 138 (176)
T ss_pred ---CCCCceEEEEecCCCCCCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHH---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 7999999999999865 89999999
Q ss_pred HHhccCCC-CCcceEeecCCCCCCHHHHHHHHHHHHHHHHH
Q 022875 238 FRDYKIPD-GKPANKFGLGNKAADKDYALKVITETNESWAK 277 (291)
Q Consensus 238 Fr~YK~~e-GK~~n~~g~~~~~~~~~~A~~vI~e~~~~~~~ 277 (291)
|++||.++ ||.++..||. ++++|+++|++||++|++
T Consensus 139 F~~YK~le~gk~~~v~g~~----~~~~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 139 FEHYKDLEKGKWVKVEGWG----GAEEAKAEIVEAIERAKK 175 (176)
T ss_pred HHHhcCCCCCCCEEecCcc----CHHHHHHHHHHHHHHHhc
Confidence 99999987 9999999998 599999999999999975
No 6
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=1.6e-56 Score=387.41 Aligned_cols=155 Identities=40% Similarity=0.640 Sum_probs=140.0
Q ss_pred EEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCCcccCCCCCCCCcceEEEecCc
Q 022875 97 NFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVEGAFGDNDPVDVVEIGER 176 (291)
Q Consensus 97 n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~g~~gDgDPLDVlvig~~ 176 (291)
||||||||||++|||+++++++++|.| +++++..||+|||||||||+ ||||||||||||+.
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr------~~~~~~~yP~NYGfIP~T~~-------------~DGDPLDvlvl~~~ 61 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDR------PLYSSMPYPFNYGFIPQTLG-------------GDGDPLDVLVLGSE 61 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEE------E-SSSBS-SSEEEEETTEEB-------------TTSSCEEEEEESSS
T ss_pred CEEEEECCCCCeeEEECCCCCCcccee------ccccCcCCccccccccceec-------------CCCCeeeEEEEecc
Confidence 899999999999999999999888887 56777778889999999998 99999999999999
Q ss_pred ccCCceEEEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCcccccccChhHHHHHHHHHHhccCC-CCCcceEeecC
Q 022875 177 RRKIGEILRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKHFPGTLTAIRDWFRDYKIP-DGKPANKFGLG 255 (291)
Q Consensus 177 ~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wFr~YK~~-eGK~~n~~g~~ 255 (291)
++.||++++|||||+|+|+|+||+|||||||+++||++++|+|++|++ |+.+++|++||++||.+ ++|.+...+|.
T Consensus 62 ~~~~G~v~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~dl~dl~---~~~~~~i~~fF~~YK~l~~~k~~~~~~~~ 138 (156)
T PF00719_consen 62 PLPPGSVVRVRVIGVLKMIDDGERDDKIIAVPVDDPRYDDIKDLEDLP---PHLLDEIEHFFRNYKDLEENKWVEVGGWE 138 (156)
T ss_dssp ---TTEEEEEEEEEEEEEEETTEEEEEEEEEETTCGGGTTHHSGGGSS---HHHHHHHHHHHHHTTTTSTTEEEEEEEEE
T ss_pred cccceeEEEEeceEEEEEeeCCCCceEEEEeccCCcccCCcCcHHHhC---hhHHHHHHHHHHHhcCcCCCCeEEeCCCc
Confidence 999999999999999999999999999999999999999888888886 55899999999999999 89999888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 022875 256 NKAADKDYALKVITETNESWAK 277 (291)
Q Consensus 256 ~~~~~~~~A~~vI~e~~~~~~~ 277 (291)
++++|+++|++||++|++
T Consensus 139 ----~~~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 139 ----DAEEALKVIKEAHERYKK 156 (156)
T ss_dssp ----EHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHhhC
Confidence 599999999999999986
No 7
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=7e-56 Score=392.18 Aligned_cols=166 Identities=30% Similarity=0.418 Sum_probs=150.3
Q ss_pred CeeEEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCCcccCCCCCCCCcceEEEe
Q 022875 94 GVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVEGAFGDNDPVDVVEI 173 (291)
Q Consensus 94 ~~~n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~g~~gDgDPLDVlvi 173 (291)
+.+||||||||||++|||+|++. +.|++|+.....+.||+ |||||||||+ |||||||||||
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~--g~i~~DR~l~~~~~YP~----NYGfIP~Tl~-------------~DGDPLDvlvl 63 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKT--NKIVVDRILRGDFVYPA----NYGFIKEALD-------------WDGDELDVLVY 63 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCC--CCEEEEeecCCCCCCCc----CcccCCCccC-------------CCCCceEEEEE
Confidence 57999999999999999998765 58999986554555555 9999999998 99999999999
Q ss_pred cCcccCCceEEEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCcccccccChhHHHHHHHHHHhccCCCCCcce-Ee
Q 022875 174 GERRRKIGEILRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPAN-KF 252 (291)
Q Consensus 174 g~~~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wFr~YK~~eGK~~n-~~ 252 (291)
|+.++.||++++|||||+|+|+|+||.|||||||+++||.+++|+|++||+++ ++++|+|||++||.++||+++ ..
T Consensus 64 ~~~~~~pG~vi~~r~IGvl~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~---~l~~I~~fF~~YK~legk~~~~v~ 140 (184)
T PRK02230 64 SDQKFLPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQH---WLDEIEYFFSNYKNWKRKGITKVK 140 (184)
T ss_pred CCCCCCCccEEEEEEEEEEEeccCCCcCcEEEEEECCCCChhhcCChHHCCHH---HHHHHHHHHHHhcCCCCCCeEEeC
Confidence 99999999999999999999999999999999999999999999999999977 799999999999999999876 66
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHhcCccCCCC
Q 022875 253 GLGNKAADKDYALKVITETNESWAKLVKRSIEAGE 287 (291)
Q Consensus 253 g~~~~~~~~~~A~~vI~e~~~~~~~l~~~~~~~~~ 287 (291)
||. |+++|+++|++|+++|+++ |+.+++.
T Consensus 141 g~~----~~~~A~~~I~~~~~~y~~~--~~~~~~~ 169 (184)
T PRK02230 141 GFE----DEKWALKEYKECVELMKKY--GKLPKDE 169 (184)
T ss_pred Ccc----CHHHHHHHHHHHHHHHHHc--CCCcHHH
Confidence 666 6999999999999999988 5555543
No 8
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=2.9e-55 Score=379.44 Aligned_cols=154 Identities=46% Similarity=0.747 Sum_probs=140.7
Q ss_pred CeeEEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCCcccCCCCCCCCcceEEEe
Q 022875 94 GVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVEGAFGDNDPVDVVEI 173 (291)
Q Consensus 94 ~~~n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~g~~gDgDPLDVlvi 173 (291)
+.+||||||||||++|||+++++ ++|+||+.....+.| |||||||||||+ +||||||||||
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~--g~i~~DR~l~~~~~y----P~nYGfiP~T~~-------------~DgDPlDvlvl 61 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKET--GPIKVDRFLYSSMGY----PWNYGFIPQTLE-------------DDGDPLDVLVI 61 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCC--CceeeccccccCCcC----cccccccCCccc-------------CCCCceEEEEE
Confidence 36899999999999999999887 799999755444444 559999999998 89999999999
Q ss_pred cCcccCCceEEEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCcccccccChhHHHHHHHHHHhccCCCC-CcceEe
Q 022875 174 GERRRKIGEILRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKHFPGTLTAIRDWFRDYKIPDG-KPANKF 252 (291)
Q Consensus 174 g~~~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wFr~YK~~eG-K~~n~~ 252 (291)
|+.++.||++++|||||+|+|+|+||.|||||||+.+||++++|+|++||++ +++++|+|||++||.++| |+++..
T Consensus 62 ~~~~~~~G~~~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~---~~l~~I~~fF~~YK~le~~k~~~~~ 138 (155)
T cd00412 62 GEEPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVPP---HLLDEIKHFFEHYKDLEGKKEVKVA 138 (155)
T ss_pred cCCCCCCeeEEEEEEEEEEEeccCCCccceEEEeeCCCcccccCCChHHCCH---HHHHHHHHHHHHhcccCCCCceEEC
Confidence 9999999999999999999999999999999999999999999999999985 489999999999999997 667777
Q ss_pred ecCCCCCCHHHHHHHHHHHHH
Q 022875 253 GLGNKAADKDYALKVITETNE 273 (291)
Q Consensus 253 g~~~~~~~~~~A~~vI~e~~~ 273 (291)
||. |+++|+++|++||+
T Consensus 139 g~~----~~~~A~~~I~~~~~ 155 (155)
T cd00412 139 GWK----DKEEALKIIKESIE 155 (155)
T ss_pred cCc----CHHHHHHHHHHHhC
Confidence 776 69999999999984
No 9
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=3.5e-53 Score=371.43 Aligned_cols=170 Identities=35% Similarity=0.536 Sum_probs=158.5
Q ss_pred CCCCCCCCCCCCCeeEEEEEeCCCCCceEEEeccCCCCceeeeccCCeeeEeccccccccCccccccCCCCcCCcccCCC
Q 022875 82 SPWHDIPLQLGDGVFNFVVEIPKESSAKMEVATDELYTPIKQDIKKGKLRYYPYNINWNYGLFPQTWEDPSFANSEVEGA 161 (291)
Q Consensus 82 SpwHDIPl~~~~~~~n~VVEIPrgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~~~NYGfIPqTwedp~~~~~~~~g~ 161 (291)
|+||+||+.++...+||+||||+||++|||++++.+..++.|+.+++ +.||+ |||||||||+
T Consensus 1 ~~~~~~~~~~~~~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~--~~YP~----NYGfiP~Tl~------------ 62 (171)
T COG0221 1 MDLHKIPAGPDDEDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTP--MGYPV----NYGFIPNTLS------------ 62 (171)
T ss_pred CCccccCCCCCcceEEEEEeccCCCccceEEeeecCceeeeecCCCC--CcCCc----cccccCCccc------------
Confidence 68999999877679999999999999999999999988887776555 55565 9999999998
Q ss_pred CCCCCcceEEEecCcccCCceEEEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCcccccccChhHHHHHHHHHHhc
Q 022875 162 FGDNDPVDVVEIGERRRKIGEILRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKHFPGTLTAIRDWFRDY 241 (291)
Q Consensus 162 ~gDgDPLDVlvig~~~~~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~~Pg~l~~i~~wFr~Y 241 (291)
+|||||||||++++++.||++++|||||+|+|+|+||.|||||||+..||++++|+|++|++++ ++++|+|||++|
T Consensus 63 -~DGDPlDvlVi~~~p~~pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~---~~~~i~~ffe~y 138 (171)
T COG0221 63 -DDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEH---LLDEIQHFFETY 138 (171)
T ss_pred -CCCCceEEEEEcCcCCCceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHH---HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999 599999999999
Q ss_pred cCCCC-CcceEeecCCCCCCHHHHHHHHHHHHHHHHH
Q 022875 242 KIPDG-KPANKFGLGNKAADKDYALKVITETNESWAK 277 (291)
Q Consensus 242 K~~eG-K~~n~~g~~~~~~~~~~A~~vI~e~~~~~~~ 277 (291)
|.++. |++.+.||. |+++|.++|++||++|++
T Consensus 139 K~le~~k~~~~~gw~----~~~~A~~~i~~~~~~~k~ 171 (171)
T COG0221 139 KDLEKGKWVKVEGWE----DAEEAKKEIKEAIERYKE 171 (171)
T ss_pred HhcCCCcEEEecccc----CHHHHHHHHHHHHHHhhC
Confidence 98884 999999998 489999999999999974
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=77.59 E-value=2.9 Score=39.92 Aligned_cols=136 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred cCCCCCCCCCCC-CCeeEEEEEeC-CCCCceEEEeccCCCCceeeeccCCeeeEecccc---ccccC----ccccccC--
Q 022875 81 VSPWHDIPLQLG-DGVFNFVVEIP-KESSAKMEVATDELYTPIKQDIKKGKLRYYPYNI---NWNYG----LFPQTWE-- 149 (291)
Q Consensus 81 ~SpwHDIPl~~~-~~~~n~VVEIP-rgS~aKyEi~k~~~~npI~qD~k~g~lr~yP~~~---~~NYG----fIPqTwe-- 149 (291)
.++||++-...+ +...|+++||. +++.++++.|++.+ -++.++-.-.-.-|+++| |--+- .-|.|-+
T Consensus 38 a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkG--klR~v~n~fp~~gYiwNYGalPqTwedP~~~~~~t~~~g 115 (279)
T KOG1626|consen 38 AHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKG--KLRFVRNLFPYKGYIWNYGALPQTWEDPNHVDPETKAKG 115 (279)
T ss_pred cCccccEeecccccceeeeEEEEeccCCCCcceeeccCC--ceEEEEecccccccccccccCcccccCCCcccccccccC
Confidence 559999877654 78899999999 99999999999887 466666543333344322 11111 2344443
Q ss_pred --CCCcCCcccCCCCCCCCcceEEEecCccc-CCceEEEEEEceeEEeeeCCccceEEEEEeCCCccccCCCCccccccc
Q 022875 150 --DPSFANSEVEGAFGDNDPVDVVEIGERRR-KIGEILRVKPLSALAMIDEGELDWKIVAISLDDPKAALVNDVDDVEKH 226 (291)
Q Consensus 150 --dp~~~~~~~~g~~gDgDPLDVlvig~~~~-~~G~v~~vrvlGvL~miDeGE~DwKIIaV~~~Dp~~~~indi~Dv~~~ 226 (291)
||--.-.-......=|+=|-|=+||.-++ --|+. .=|+|. +..-| ...+.+.+|+|++.+..+
T Consensus 116 DnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~-DwKiIA-IdvnD------------P~A~~~ndi~DV~~~~Pg 181 (279)
T KOG1626|consen 116 DNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGET-DWKIIA-IDVND------------PLASEYNDIEDVEKLFPG 181 (279)
T ss_pred CCCcceeeEecccccccccEEEEEeeeeeecccCCCc-cceEEE-EECCC------------cchhhhccHHHHHHhCcc
Confidence 12100000001234566677777777544 34543 334443 12222 335667778888877665
Q ss_pred ChhHHH
Q 022875 227 FPGTLT 232 (291)
Q Consensus 227 ~Pg~l~ 232 (291)
+=....
T Consensus 182 ~L~~tr 187 (279)
T KOG1626|consen 182 LLEATR 187 (279)
T ss_pred hHHHHH
Confidence 533333
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=60.98 E-value=15 Score=25.58 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=35.3
Q ss_pred ccccccChhHHHHHHHHHHhccCCC--------CCcceEeecCCCCCCHHHHHHHHHHHHH
Q 022875 221 DDVEKHFPGTLTAIRDWFRDYKIPD--------GKPANKFGLGNKAADKDYALKVITETNE 273 (291)
Q Consensus 221 ~Dv~~~~Pg~l~~i~~wFr~YK~~e--------GK~~n~~g~~~~~~~~~~A~~vI~e~~~ 273 (291)
..||..+ ..++|+++|..|-... .+....+||- ++.+.++|.+++++.+.
T Consensus 4 ~nlp~~~--t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V-~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 4 GNLPPDV--TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFV-EFESEEDAEKALEELNG 61 (70)
T ss_dssp ESETTTS--SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEE-EESSHHHHHHHHHHHTT
T ss_pred cCCCCcC--CHHHHHHHHHHhhhcccccccccccccccceEEE-EEcCHHHHHHHHHHcCC
Confidence 3455554 5789999999987542 2334566776 57789999999887654
No 12
>PRK03760 hypothetical protein; Provisional
Probab=49.11 E-value=12 Score=31.27 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=28.4
Q ss_pred EEEEcCCCCccCCCCCCCC---CCCCCeeEEEEEeCCCCCceEEEec
Q 022875 71 VFFVNNSGKKVSPWHDIPL---QLGDGVFNFVVEIPKESSAKMEVAT 114 (291)
Q Consensus 71 ~~~~~~~g~~~SpwHDIPl---~~~~~~~n~VVEIPrgS~aKyEi~k 114 (291)
+-|.+.+|++++ .|.+.. +........|+|+|.|+.+++-+..
T Consensus 63 iiFld~~g~Vv~-i~~~~P~~~~~~~~~a~~VLEl~aG~~~~~gi~~ 108 (117)
T PRK03760 63 VIFLDSNRRVVD-FKTLKPWRIYVPKKPARYIIEGPVGKIRVLKVEV 108 (117)
T ss_pred EEEECCCCeEEE-EEeCCCccccCCCccceEEEEeCCChHHHcCCCC
Confidence 344488888665 233322 2334567889999999998877643
No 13
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=33.34 E-value=7.8 Score=31.57 Aligned_cols=43 Identities=23% Similarity=0.521 Sum_probs=26.2
Q ss_pred EEEEEcCCCCccC------CCCCCCCCCCCCeeEEEEEeCCCCCceEEEe
Q 022875 70 RVFFVNNSGKKVS------PWHDIPLQLGDGVFNFVVEIPKESSAKMEVA 113 (291)
Q Consensus 70 r~~~~~~~g~~~S------pwHDIPl~~~~~~~n~VVEIPrgS~aKyEi~ 113 (291)
-+.|.|.+|+++. ||...+. .+..-...|+|+|.|+..|+.|.
T Consensus 51 Di~fld~~g~Vv~i~~~~~P~~~~~~-~~~~~a~~vLE~~aG~~~~~~i~ 99 (108)
T PF02643_consen 51 DIAFLDSDGRVVKIERMVPPWRTYPC-PSYKPARYVLELPAGWFEKLGIK 99 (108)
T ss_dssp EEEEE-TTSBEEEEEEEE-TT--S-E-EECCEECEEEEEETTHHHHHT--
T ss_pred EEEEECCCCeEEEEEccCCCCccCCC-CCCCccCEEEEcCCCchhhcCCC
Confidence 4566688898765 4443331 12345889999999998887774
No 14
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=33.29 E-value=40 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.4
Q ss_pred eEEEecCcccCCceEEEEEEc
Q 022875 169 DVVEIGERRRKIGEILRVKPL 189 (291)
Q Consensus 169 DVlvig~~~~~~G~v~~vrvl 189 (291)
..||++++|+.+|+.+.+|+.
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~ 50 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRID 50 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEE
Confidence 479999999999999999984
No 15
>smart00588 NEUZ domain in neuralized proteins.
Probab=29.66 E-value=62 Score=27.11 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCCcceEEEecCcccCCceEEEEEEceeEEeeeCCccce---EEEEEeCCCccc
Q 022875 164 DNDPVDVVEIGERRRKIGEILRVKPLSALAMIDEGELDW---KIVAISLDDPKA 214 (291)
Q Consensus 164 DgDPLDVlvig~~~~~~G~v~~vrvlGvL~miDeGE~Dw---KIIaV~~~Dp~~ 214 (291)
+.+.-+.+|++++|+.+|+.+.+|+.-. +..| ==+++-..||..
T Consensus 26 ~~~f~~givFS~rPl~~~E~~~v~i~~~-------~~~w~G~l~~G~Ts~dP~~ 72 (123)
T smart00588 26 ASDFCNALVFSARPLRINELFEVKIEKV-------VRKWSGALRFGVTTCDPAT 72 (123)
T ss_pred cCCcCceEEecCCCCcCCCEEEEEEEEe-------cCCccCceEEEEecCCccc
Confidence 4456678999999999999999998632 1222 135666778863
No 16
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=25.87 E-value=19 Score=27.86 Aligned_cols=10 Identities=60% Similarity=1.066 Sum_probs=8.1
Q ss_pred ccccCCCCcC
Q 022875 145 PQTWEDPSFA 154 (291)
Q Consensus 145 PqTwedp~~~ 154 (291)
|+|||||+..
T Consensus 56 P~TYEDP~qA 65 (75)
T PF14575_consen 56 PHTYEDPNQA 65 (75)
T ss_dssp GGGSSSHHHH
T ss_pred cccccCHHHH
Confidence 7899999754
No 17
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=24.54 E-value=60 Score=25.76 Aligned_cols=31 Identities=35% Similarity=0.839 Sum_probs=23.8
Q ss_pred cCCCCcceEEEEEcCCCCcc----CCCCCCCCCCC
Q 022875 62 GQPETLDYRVFFVNNSGKKV----SPWHDIPLQLG 92 (291)
Q Consensus 62 G~~~t~~~r~~~~~~~g~~~----SpwHDIPl~~~ 92 (291)
....+..||+|+.|++|-.+ ++|+.+.|.+.
T Consensus 45 ~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~ 79 (101)
T cd09030 45 SKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGG 79 (101)
T ss_pred CCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCC
Confidence 34678899999999998533 77888877653
No 18
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=22.95 E-value=1.2e+02 Score=25.85 Aligned_cols=41 Identities=27% Similarity=0.725 Sum_probs=25.6
Q ss_pred EEEEcCCCCccC-----CCCCCCCCCCCCeeEEEEEeCCCCCceEEE
Q 022875 71 VFFVNNSGKKVS-----PWHDIPLQLGDGVFNFVVEIPKESSAKMEV 112 (291)
Q Consensus 71 ~~~~~~~g~~~S-----pwHDIPl~~~~~~~n~VVEIPrgS~aKyEi 112 (291)
+-|.+.+|.+.+ ||+.-|... ..-++.|+|.|+|..+++-+
T Consensus 66 iiFid~dg~i~~i~~~~P~~~~~~~~-~~~~~yvLEl~~G~~~~~~i 111 (126)
T COG1430 66 IIFIDSDGRVVDIVELVPWSTYPCKS-YGPVRYVLELPAGWAARLGI 111 (126)
T ss_pred EEEEcCCCCEEEEEeccccccCCCCC-CCCccEEEEecCCchhhcCC
Confidence 444477787654 444444322 23348999999999876555
No 19
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=22.15 E-value=40 Score=32.07 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=19.9
Q ss_pred ccccCCCCcccccccChhHHHHHHHHHHhc
Q 022875 212 PKAALVNDVDDVEKHFPGTLTAIRDWFRDY 241 (291)
Q Consensus 212 p~~~~indi~Dv~~~~Pg~l~~i~~wFr~Y 241 (291)
|-|--++|+++||.. +-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~---l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSV---LSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHH---HHHHHHHHHHHH
Confidence 556667888888665 358899999853
No 20
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=21.39 E-value=48 Score=24.37 Aligned_cols=12 Identities=67% Similarity=1.171 Sum_probs=10.1
Q ss_pred ccCCCCCCCCCC
Q 022875 80 KVSPWHDIPLQL 91 (291)
Q Consensus 80 ~~SpwHDIPl~~ 91 (291)
..|||.|+||-.
T Consensus 12 ~~SPWk~~pl~~ 23 (57)
T PF08437_consen 12 KNSPWKDIPLLK 23 (57)
T ss_pred HcCCCCCCCCcC
Confidence 479999999964
No 21
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=20.48 E-value=64 Score=33.00 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=35.8
Q ss_pred EeccccccccCccccccCCCCcCCcccCCCCCCCCcceEEEecC---cccCCceEEE
Q 022875 132 YYPYNINWNYGLFPQTWEDPSFANSEVEGAFGDNDPVDVVEIGE---RRRKIGEILR 185 (291)
Q Consensus 132 ~yP~~~~~NYGfIPqTwedp~~~~~~~~g~~gDgDPLDVlvig~---~~~~~G~v~~ 185 (291)
.|=+.+-||||.|+..-.+ .-|.+.-||.|=+.||= +.+.||...+
T Consensus 215 M~D~sASws~~~i~~~~~~--------~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk 263 (438)
T PF04425_consen 215 MFDFSASWSYANIDRLVGD--------NYCPGEVDPYDGTYLGLPNKRILEPGVKYK 263 (438)
T ss_pred hhcceeccccccccccccc--------ccCCccccCCCCeeEeCCCCceecCCCeEe
Confidence 3666778999999988653 24568999999999885 6678888755
Done!