BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022876
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2
SV=1
Length = 261
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 163/252 (64%), Gaps = 8/252 (3%)
Query: 45 MAE-DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARN 103
MAE +L+LD+ IR WV++P+ + L+G++R++VS L++S + + V + QV++R+R
Sbjct: 1 MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRV 60
Query: 104 LRAGANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMI 163
LR +I +SF R+ YF N+E+G K + + +DP+M DMMK N++ +
Sbjct: 61 LRENGKYIPKQSFLMRKFYFNNQEDGFFK--KTKRKVVPPSPMTDPSMLTDMMKGNVTNV 118
Query: 164 IPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFG 223
+P L W+N+ FSGFV K+PFPLT RF+ MLQ GI+L ++D S+VSS SWYFLN+FG
Sbjct: 119 LPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIELLSLDASWVSSASWYFLNVFG 178
Query: 224 LRGLFSLILGEENATDDTQRMM-QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFE 278
LR ++SLILG++N D ++ M QMSG D +K+ AE ++L++ H+WAL E
Sbjct: 179 LRSMYSLILGQDNGADQSRIMQEQMSGAAMAMPADTNKAFKAEWEALELTDHQWALENVE 238
Query: 279 QRAETVLKDLVG 290
+ + DL G
Sbjct: 239 EDLMSKDLDLSG 250
>sp|Q5R7C1|EMC3_PONAB ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2
SV=3
Length = 261
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 159/247 (64%), Gaps = 11/247 (4%)
Query: 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
+L+LD+ IR WV++P+ ++ +G++R++VS L++S + + V + QV++R+R LR
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
+I +SF R+ YF N E+G K + + +DP M DMMK N++ ++P
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122
Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGL 227
L W+N FSGFV K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR +
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSI 182
Query: 228 FSLILGEENATDDTQRMM--QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRA 281
+SLILG++NA D + RMM QM+G D +K+ E ++L++ H+WAL E+
Sbjct: 183 YSLILGQDNAADQS-RMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE-- 239
Query: 282 ETVLKDL 288
E + KDL
Sbjct: 240 ELMAKDL 246
>sp|Q9P0I2|EMC3_HUMAN ER membrane protein complex subunit 3 OS=Homo sapiens GN=EMC3 PE=1
SV=3
Length = 261
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 159/247 (64%), Gaps = 11/247 (4%)
Query: 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
+L+LD+ IR WV++P+ ++ +G++R++VS L++S + + V + QV++R+R LR
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
+I +SF R+ YF N E+G K + + +DP M DMMK N++ ++P
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122
Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGL 227
L W+N FSGFV K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR +
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSI 182
Query: 228 FSLILGEENATDDTQRMM--QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRA 281
+SLILG++NA D + RMM QM+G D +K+ E ++L++ H+WAL E+
Sbjct: 183 YSLILGQDNAADQS-RMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE-- 239
Query: 282 ETVLKDL 288
E + KDL
Sbjct: 240 ELMAKDL 246
>sp|Q3ZCB8|EMC3_BOVIN ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2
SV=3
Length = 261
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 159/247 (64%), Gaps = 11/247 (4%)
Query: 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
+L+LD+ IR WV++P+ ++ +G++R++VS L++S + + V + QV++R+R LR
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
+I +SF R+ YF N E+G K + + +DP M DMMK N++ ++P
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPVTDPTMLTDMMKGNVTNVLPMI 122
Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGL 227
L W+N FSGFV K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR +
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSI 182
Query: 228 FSLILGEENATDDTQRMM--QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRA 281
+SLILG++NA D + RMM QM+G D +K+ E ++L++ H+WAL E+
Sbjct: 183 YSLILGQDNAADQS-RMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE-- 239
Query: 282 ETVLKDL 288
E + KDL
Sbjct: 240 ELMAKDL 246
>sp|Q5U2V8|EMC3_RAT ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3
PE=2 SV=3
Length = 261
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 159/247 (64%), Gaps = 11/247 (4%)
Query: 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
+L+LD+ IR WV++P+ ++ +G++R++VS L++S + + V + QV++R+R LR
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
+I +SF R+ YF N E+G K + + +DP M DMMK N++ ++P
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122
Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGL 227
L W+N FSGFV K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR +
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSI 182
Query: 228 FSLILGEENATDDTQRMM--QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRA 281
+SLILG++NA D + RMM QM+G D +K+ E ++L++ H+WAL E+
Sbjct: 183 YSLILGQDNAADQS-RMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE-- 239
Query: 282 ETVLKDL 288
E + +DL
Sbjct: 240 ELMARDL 246
>sp|Q99KI3|EMC3_MOUSE ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=2
SV=3
Length = 261
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 159/247 (64%), Gaps = 11/247 (4%)
Query: 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAG 107
+L+LD+ IR WV++P+ ++ +G++R++VS L++S + + V + QV++R+R LR
Sbjct: 5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLREN 64
Query: 108 ANFISPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQT 167
+I +SF R+ YF N E+G K + + +DP M DMMK N++ ++P
Sbjct: 65 GKYIPKQSFLTRKYYFNNPEDGFFK--KTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMI 122
Query: 168 LTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGL 227
L W+N FSGFV K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR +
Sbjct: 123 LIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSI 182
Query: 228 FSLILGEENATDDTQRMM--QMSGFGF----DPSKSLGAEKDSLDIIQHEWALPKFEQRA 281
+SLILG++NA D + RMM QM+G D +K+ E ++L++ H+WAL E+
Sbjct: 183 YSLILGQDNAADQS-RMMQEQMTGAAMAMPADTNKAFKTEWEALELTDHQWALDDVEE-- 239
Query: 282 ETVLKDL 288
E + +DL
Sbjct: 240 ELMARDL 246
>sp|Q9P787|YNY3_SCHPO ER membrane protein complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1711.03 PE=3 SV=1
Length = 258
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 152/251 (60%), Gaps = 17/251 (6%)
Query: 47 EDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSS-QVPDPKIVKEGQVIVRARNLR 105
+ L+LD A+R+WVL+P+ VM+LIGILR+ + L++SS + + ++E +++ RA LR
Sbjct: 2 QKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYALR 61
Query: 106 AGANFISPKSFRARRVYFCN--EENGLLHVPKGQAQNAQAQMFSDPNMA--MDMMKKNLS 161
A +N + P+S AR+ + + L A A + D + M+ MK N+
Sbjct: 62 ACSNSLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAANPLMDDKTLEGLMESMKGNML 121
Query: 162 MIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNL 221
M++PQT+ W+N FFSGF+ K+PFPLT RF+S+ Q+G+ +DV +VSS SWYFLNL
Sbjct: 122 MVVPQTIIMTWINEFFSGFILLKLPFPLTLRFKSIFQSGVATQDLDVQWVSSISWYFLNL 181
Query: 222 FGLRGLFSLILGEENATDDTQRMMQMSGF------------GFDPSKSLGAEKDSLDIIQ 269
FGL+ +++L+LGE NA + M M+GF G D SK + +E +++ I++
Sbjct: 182 FGLKSVYALLLGENNAASNATNEMGMAGFSSAAATAQLIQPGQDISKMMLSEAENVQILK 241
Query: 270 HEWALPKFEQR 280
+E L E+R
Sbjct: 242 NESLLVDVEKR 252
>sp|Q54YN3|EMC3_DICDI ER membrane protein complex subunit 3 OS=Dictyostelium discoideum
GN=emc3 PE=3 SV=1
Length = 314
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 146/253 (57%), Gaps = 22/253 (8%)
Query: 49 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMR--SSQVPDPKIVKEGQVIVRARNLRA 106
+VLD IR+WV+IP+ +V+ ++ L+ +S++M+ S + D + + Q I R R L +
Sbjct: 6 IVLDVEIRNWVVIPILIVLFIVSALKLNISRIMQINSGKPQDVEKTMQMQTINRVRRLVS 65
Query: 107 GANFISPKSFRARRVYFCNE-----ENGLLH--VPKGQAQNAQA-----QMFSDPNMAMD 154
N I KSF R+ Y C G+L P + N MF+DP+ D
Sbjct: 66 FYNRIPQKSFFIRKAYLCGTTGSKTNKGILSSIAPTQEDSNPMNMMFANSMFTDPSGITD 125
Query: 155 MMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPF-PLTQRFRSMLQNGIDLSTVDVSYVSS 213
M+K N+ +IPQ +WVN FFSGFVA K+PF PLT RF++ LQ GI++ ++DVSYVSS
Sbjct: 126 MLKGNIMHLIPQVTMMSWVNHFFSGFVACKLPFFPLTIRFKTFLQRGIEMGSLDVSYVSS 185
Query: 214 RSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGFGFDPS------KSLGAEKDSLDI 267
SWYFL FG G+ +++LGE + D+Q ++Q S P+ K +EK+++++
Sbjct: 186 LSWYFLCWFGSEGINAILLGENMVSADSQ-LLQSSIEPGPPTQQTPIHKIYASEKENIEM 244
Query: 268 IQHEWALPKFEQR 280
I+++ + E R
Sbjct: 245 IRYDSLMTNIEDR 257
>sp|B5VLV9|EMC3_YEAS6 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=AIM27 PE=3 SV=2
Length = 253
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 139/250 (55%), Gaps = 19/250 (7%)
Query: 49 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLR 105
++LD ++ WVL+P+S+VMVL G+L+ ++ L+ S + P++ + E Q + A+ L
Sbjct: 1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLI 60
Query: 106 AGANFISPKSFRARRVYFCNEENGLLHVPKGQAQN-AQA----QMFSDPNMA---MDMMK 157
+S +F A++ + + H+ K + Q +QA F+DPNM+ M+M K
Sbjct: 61 GNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAK 120
Query: 158 KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWY 217
N++ IPQT+ WVN FF+GF+ ++PFPLT +F+ MLQ GI +DV +VSS SWY
Sbjct: 121 GNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWY 180
Query: 218 FLNLFGLRGLFSLI------LGEENATDDTQRMMQMSGFGFDPSKSLGAEKDSLDIIQHE 271
F+++ GL +++LI +G + Q D K++ A + L IIQHE
Sbjct: 181 FISVLGLNPVYNLIGLNDQDMGIQAGIGGPQGPQGPPQSQVD--KAMHAMANDLTIIQHE 238
Query: 272 WALPKFEQRA 281
L EQR
Sbjct: 239 TCLDNVEQRV 248
>sp|B3LQQ2|EMC3_YEAS1 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=AIM27 PE=3 SV=2
Length = 253
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 139/250 (55%), Gaps = 19/250 (7%)
Query: 49 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLR 105
++LD ++ WVL+P+S+VMVL G+L+ ++ L+ S + P++ + E Q + A+ L
Sbjct: 1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLI 60
Query: 106 AGANFISPKSFRARRVYFCNEENGLLHVPKGQAQN-AQA----QMFSDPNMA---MDMMK 157
+S +F A++ + + H+ K + Q +QA F+DPNM+ M+M K
Sbjct: 61 GNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAK 120
Query: 158 KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWY 217
N++ IPQT+ WVN FF+GF+ ++PFPLT +F+ MLQ GI +DV +VSS SWY
Sbjct: 121 GNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWY 180
Query: 218 FLNLFGLRGLFSLI------LGEENATDDTQRMMQMSGFGFDPSKSLGAEKDSLDIIQHE 271
F+++ GL +++LI +G + Q D K++ A + L IIQHE
Sbjct: 181 FISVLGLNPVYNLIGLNDQDMGIQAGIGGPQGPQGPPQSQVD--KAMHAMANDLTIIQHE 238
Query: 272 WALPKFEQRA 281
L EQR
Sbjct: 239 TCLDNVEQRV 248
>sp|P36039|EMC3_YEAST ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC3 PE=1 SV=3
Length = 253
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 140/250 (56%), Gaps = 19/250 (7%)
Query: 49 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLR 105
++LD ++ WVL+P+S+VMVL G+L+ ++ L+ S + P++ + E Q + A+ L
Sbjct: 1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLI 60
Query: 106 AGANFISPKSFRARRVYFCNEENGLLHVPKGQAQN-AQA----QMFSDPNMA---MDMMK 157
+S +F A++ + + H+ K + Q+ +QA F+DP+M+ M+M K
Sbjct: 61 GNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAK 120
Query: 158 KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWY 217
N++ IPQT+ WVN FF+GF+ ++PFPLT +F+ MLQ GI +DV +VSS SWY
Sbjct: 121 GNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWY 180
Query: 218 FLNLFGLRGLFSLI------LGEENATDDTQRMMQMSGFGFDPSKSLGAEKDSLDIIQHE 271
F+++ GL +++LI +G + Q D K++ A + L IIQHE
Sbjct: 181 FISVLGLNPVYNLIGLNDQDMGIQAGIGGPQGPQGPPQSQVD--KAMHAMANDLTIIQHE 238
Query: 272 WALPKFEQRA 281
L EQR
Sbjct: 239 TCLDNVEQRV 248
>sp|A7A082|EMC3_YEAS7 ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae
(strain YJM789) GN=AIM27 PE=3 SV=2
Length = 253
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 140/250 (56%), Gaps = 19/250 (7%)
Query: 49 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLR 105
++LD ++ WVL+P+S+VMVL G+L+ ++ L+ S + P++ + E Q + A+ L
Sbjct: 1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLI 60
Query: 106 AGANFISPKSFRARRVYFCNEENGLLHVPKGQAQN-AQA----QMFSDPNMA---MDMMK 157
+S +F A++ + + H+ K + Q+ +QA F+DP+M+ M+M K
Sbjct: 61 GNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAK 120
Query: 158 KNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWY 217
N++ IPQT+ WVN FF+GF+ ++PFPLT +F+ MLQ GI +DV +VSS SWY
Sbjct: 121 GNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWY 180
Query: 218 FLNLFGLRGLFSLI------LGEENATDDTQRMMQMSGFGFDPSKSLGAEKDSLDIIQHE 271
F+++ GL +++LI +G + Q D K++ A + L IIQHE
Sbjct: 181 FISVLGLNPVYNLIGLNDQDMGIQAGIGGPQGPQGPPQSQVD--KAMHAMANDLTIIQHE 238
Query: 272 WALPKFEQRA 281
L EQR
Sbjct: 239 TCLDNVEQRV 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,299,043
Number of Sequences: 539616
Number of extensions: 3714276
Number of successful extensions: 13560
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13528
Number of HSP's gapped (non-prelim): 15
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)