Query 022876
Match_columns 290
No_of_seqs 119 out of 182
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3188 Uncharacterized conser 100.0 1E-107 2E-112 733.0 19.1 241 45-285 1-245 (246)
2 PF01956 DUF106: Integral memb 100.0 4.2E-51 9.2E-56 350.7 15.1 165 48-236 1-168 (168)
3 KOG3312 Predicted membrane pro 98.9 9.6E-09 2.1E-13 90.2 8.3 95 154-256 86-184 (186)
4 COG1422 Predicted membrane pro 95.6 0.036 7.8E-07 50.8 6.6 74 156-234 122-197 (201)
5 TIGR02976 phageshock_pspB phag 55.9 38 0.00082 26.7 5.6 47 59-105 6-55 (75)
6 PF12606 RELT: Tumour necrosis 47.8 17 0.00036 26.7 2.3 16 59-74 5-20 (50)
7 PF06667 PspB: Phage shock pro 42.9 75 0.0016 25.1 5.4 47 58-105 5-55 (75)
8 PRK09458 pspB phage shock prot 35.6 78 0.0017 25.2 4.5 47 58-105 5-55 (75)
9 PF03814 KdpA: Potassium-trans 35.2 61 0.0013 34.3 4.9 37 112-156 214-250 (552)
10 COG0504 PyrG CTP synthase (UTP 29.7 18 0.00038 37.9 0.0 13 31-43 451-463 (533)
11 PRK01844 hypothetical protein; 27.7 1.1E+02 0.0024 24.2 4.1 36 58-93 4-45 (72)
12 TIGR00680 kdpA K+-transporting 27.6 68 0.0015 34.0 3.7 78 56-154 178-256 (563)
13 COG3197 FixS Uncharacterized p 27.4 54 0.0012 25.0 2.2 15 59-73 6-20 (58)
14 PRK01110 rpmF 50S ribosomal pr 27.1 25 0.00055 26.4 0.4 34 25-59 4-37 (60)
15 PF07297 DPM2: Dolichol phosph 27.0 85 0.0018 25.1 3.4 28 56-83 44-72 (78)
16 COG4276 Uncharacterized conser 24.7 59 0.0013 28.9 2.3 42 34-78 93-146 (153)
17 PRK13454 F0F1 ATP synthase sub 24.2 80 0.0017 27.9 3.1 29 203-231 22-51 (181)
18 PLN02563 aminoacyl-tRNA ligase 22.5 47 0.001 37.0 1.6 19 202-222 579-597 (963)
No 1
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-107 Score=733.02 Aligned_cols=241 Identities=57% Similarity=0.939 Sum_probs=228.6
Q ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhhhhhHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 022876 45 MAEDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFC 124 (290)
Q Consensus 45 ~~~~L~LDp~IR~WVllPI~ivmilvGiLRhyvt~Ll~s~kk~~~~~vre~q~L~Ra~~Lr~n~~~L~~~sF~~Rk~~~~ 124 (290)
|+.+|+|||+||+||||||+|||||+|||||||++|++++||.+.++++|+|+|+||++||+||++||++||++||+|||
T Consensus 1 Mtp~LLLD~aiR~WVlLPI~ivm~liGilRhyvsiLl~s~kk~~~~~v~e~q~l~rAr~Lr~ng~~l~~~Sf~aRk~yl~ 80 (246)
T KOG3188|consen 1 MTPDLLLDPAIRYWVLLPIVIVMFLIGILRHYVSILLQSSKKLEQEQVKEGQYLIRARLLRENGNFLPPQSFAARKEYLN 80 (246)
T ss_pred CchhhccChHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHhhhhHHHHHHHHHHhccCCCCHHHHHHHHHHhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccCCCCcchhccCCCChhHHHHHHHhhhhhHHhHHHHHHHHHHhhhcceeeeccCCChhhHHHHhhccCCCC
Q 022876 125 NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS 204 (290)
Q Consensus 125 ~~~~G~~~~~~~~~~~~~~npm~DP~~Mm~MmKgNm~~~IPq~vIm~WIN~FFSGFVv~KlPFPLT~rFK~MLQrGI~l~ 204 (290)
++|+|++.+.|.+..+++++||+||+||||||||||.|+||||+|||||||||||||++|+|||||.|||+||||||++.
T Consensus 81 ~~e~g~l~~~k~~~~~~~~~~~~DpsmlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~ 160 (246)
T KOG3188|consen 81 NEETGYLKKAKQQAAGEAPPPFNDPSMLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQ 160 (246)
T ss_pred cccccccccccccccCCCCCCCCCHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhh
Confidence 99999777666555555667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHhhhhHHHHHHhCCCCCchhHHHHHhhcCC----CCChhhHHHHHHhccccccccccccchHHH
Q 022876 205 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGF----GFDPSKSLGAEKDSLDIIQHEWALPKFEQR 280 (290)
Q Consensus 205 dLDvswVSSlSWYFLnlFGLr~vy~LlLG~~naad~~~~m~~~~g~----g~d~~K~fkaE~enL~i~~H~~~ld~iE~r 280 (290)
||||+||||+||||||+|||||||+||||++|||||++.|++|+|. ++|+.|+|++|||+|++++|+|+|.++|+|
T Consensus 161 ~LDv~wVSS~SWYFLnvfGLrsiysLiLG~~Naadq~~~~~~M~G~~~~~p~d~~ka~~~e~e~lqi~~h~~al~~ve~~ 240 (246)
T KOG3188|consen 161 DLDVSWVSSASWYFLNVFGLRSIYSLILGEENAADQTQAMMDMTGFAMAMPQDASKAFKAEWEALQIIQHEWALIDVEKR 240 (246)
T ss_pred hcchhHhhhhHHHHHHHhhhHHHHHHHhcccccccHHHHHHHhcccccCCccchHHHHHhHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999999999999999999999999998762 449999999999999999999999999999
Q ss_pred HHHHH
Q 022876 281 AETVL 285 (290)
Q Consensus 281 ~l~~L 285 (290)
+++.+
T Consensus 241 ~~a~~ 245 (246)
T KOG3188|consen 241 LLAQF 245 (246)
T ss_pred HHHhh
Confidence 77654
No 2
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=100.00 E-value=4.2e-51 Score=350.65 Aligned_cols=165 Identities=47% Similarity=0.822 Sum_probs=156.7
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHhhcCC---CCCChhhhhhhhHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 022876 48 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSS---QVPDPKIVKEGQVIVRARNLRAGANFISPKSFRARRVYFC 124 (290)
Q Consensus 48 ~L~LDp~IR~WVllPI~ivmilvGiLRhyvt~Ll~s~---kk~~~~~vre~q~L~Ra~~Lr~n~~~L~~~sF~~Rk~~~~ 124 (290)
|++|||.|| ||++||+++++++|++|||++.+++.. ++.+..+.+++++..|++.+|.|++.+++++|+.|+.+++
T Consensus 1 d~~ldp~i~-~~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 79 (168)
T PF01956_consen 1 DLVLDPLIR-WVLLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELM 79 (168)
T ss_pred CccccchHh-hhhcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 689999999 999999999999999999999999983 4568889999999999999999999999999999999998
Q ss_pred hcCCccccccCCCCcchhccCCCChhHHHHHHHhhhhhHHhHHHHHHHHHHhhhcceeeeccCCChhhHHHHhhccCCCC
Q 022876 125 NEENGLLHVPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS 204 (290)
Q Consensus 125 ~~~~G~~~~~~~~~~~~~~npm~DP~~Mm~MmKgNm~~~IPq~vIm~WIN~FFSGFVv~KlPFPLT~rFK~MLQrGI~l~ 204 (290)
+.+.|. |++|||+|+.++||+++||+|||+||+|||++|+|||||.+||+|+|||+ +
T Consensus 80 ~~~~~~---------------------~~~~mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl--~ 136 (168)
T PF01956_consen 80 EKQQEM---------------------MMMMMKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGL--E 136 (168)
T ss_pred HHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCC--C
Confidence 754431 89999999999999999999999999999999999999999999999999 9
Q ss_pred CCCccchhhhHHHHHHHhhhhHHHHHHhCCCC
Q 022876 205 TVDVSYVSSRSWYFLNLFGLRGLFSLILGEEN 236 (290)
Q Consensus 205 dLDvswVSSlSWYFLnlFGLr~vy~LlLG~~n 236 (290)
++|++||||+||||||.||++++++++||++|
T Consensus 137 ~~d~~~~s~i~wYfL~s~~~~~vi~k~lg~~n 168 (168)
T PF01956_consen 137 GLDVSYVSSISWYFLCSFGLRQVIRKLLGENN 168 (168)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999986
No 3
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=98.85 E-value=9.6e-09 Score=90.17 Aligned_cols=95 Identities=26% Similarity=0.403 Sum_probs=80.0
Q ss_pred HHHHhhhhhHHhHHHHHHHHHHhhhcceeeeccC-CChhhHHHHhhccCCCCCC-CccchhhhHHHHHHHhhhhHHHHHH
Q 022876 154 DMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPF-PLTQRFRSMLQNGIDLSTV-DVSYVSSRSWYFLNLFGLRGLFSLI 231 (290)
Q Consensus 154 ~MmKgNm~~~IPq~vIm~WIN~FFSGFVv~KlPF-PLT~rFK~MLQrGI~l~dL-DvswVSSlSWYFLnlFGLr~vy~Ll 231 (290)
--||.-++.-+--+++++-.|..|-|=||+|||| |+++ -+.|-+||+-.+|. |||++ .-|.||-..+|-..+.+
T Consensus 86 ~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~-iqglSHRnL~GdD~TDCSfi---FLYiLCtmsiRqNlQK~ 161 (186)
T KOG3312|consen 86 FKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISI-IQGLSHRNLKGDDMTDCSFI---FLYILCTMSIRQNLQKI 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHH-HhcccccCCCCCCccchHHH---HHHHHHHHHHHHHHHHH
Confidence 3467777777888999999999999999999999 9999 99999999999998 99998 99999999999999999
Q ss_pred hCCCCCchhHHHHHhhcC--CCCChhh
Q 022876 232 LGEENATDDTQRMMQMSG--FGFDPSK 256 (290)
Q Consensus 232 LG~~naad~~~~m~~~~g--~g~d~~K 256 (290)
||-... +++..++| +||+|.|
T Consensus 162 LGfaPs----Raaa~q~~~~~~P~p~k 184 (186)
T KOG3312|consen 162 LGFAPS----RAAAKQGGGFPGPPPSK 184 (186)
T ss_pred hCcCCc----hhHhhcCCCCCCCCCcc
Confidence 998543 33433433 4666654
No 4
>COG1422 Predicted membrane protein [Function unknown]
Probab=95.56 E-value=0.036 Score=50.83 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=50.4
Q ss_pred HHhhhhhHHhHHHHHHHHHHhhhcceeeeccC--CChhhHHHHhhccCCCCCCCccchhhhHHHHHHHhhhhHHHHHHhC
Q 022876 156 MKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPF--PLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 233 (290)
Q Consensus 156 mKgNm~~~IPq~vIm~WIN~FFSGFVv~KlPF--PLT~rFK~MLQrGI~l~dLDvswVSSlSWYFLnlFGLr~vy~LlLG 233 (290)
+|=-+.-+++.+.+..|+-++-++--..+-|+ -+..=|=.+.+-++- .--.-|+ -|||||-|+..-+.+.+|+
T Consensus 122 fkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gWi---~WYfLcS~~vs~ilrk~l~ 196 (201)
T COG1422 122 FKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVF--GDFLGWI---GWYFLCSFVVSQILRKVLN 196 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhcccc--ccchHHH---HHHHHHHHHHHHHHHHHHh
Confidence 34333456688888899988877665554443 233335666776662 2234577 9999999999999999986
Q ss_pred C
Q 022876 234 E 234 (290)
Q Consensus 234 ~ 234 (290)
-
T Consensus 197 i 197 (201)
T COG1422 197 I 197 (201)
T ss_pred c
Confidence 4
No 5
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=55.91 E-value=38 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHH---HHHHHHHhhcCCCCCChhhhhhhhHHHHHHHHh
Q 022876 59 VLIPLSVVMVLIGI---LRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLR 105 (290)
Q Consensus 59 VllPI~ivmilvGi---LRhyvt~Ll~s~kk~~~~~vre~q~L~Ra~~Lr 105 (290)
+++|+++.+++|+. +-||.+.=-.+..-.+-+.-+=++...+|+.++
T Consensus 6 l~~Pliif~ifVap~wl~lHY~~k~~~~~~ls~~d~~~L~~L~~~a~rm~ 55 (75)
T TIGR02976 6 LAIPLIIFVIFVAPLWLILHYRSKRKTAASLSTDDQALLQELYAKADRLE 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47899988877765 569987644442222222222255566676665
No 6
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=47.78 E-value=17 Score=26.74 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 022876 59 VLIPLSVVMVLIGILR 74 (290)
Q Consensus 59 VllPI~ivmilvGiLR 74 (290)
+++||++||++.|++=
T Consensus 5 ~iV~i~iv~~lLg~~I 20 (50)
T PF12606_consen 5 LIVSIFIVMGLLGLSI 20 (50)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5889999999999763
No 7
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=42.85 E-value=75 Score=25.07 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHH---HHHHHHhhcCCCCCChhhhhh-hhHHHHHHHHh
Q 022876 58 WVLIPLSVVMVLIGIL---RYFVSKLMRSSQVPDPKIVKE-GQVIVRARNLR 105 (290)
Q Consensus 58 WVllPI~ivmilvGiL---Rhyvt~Ll~s~kk~~~~~vre-~q~L~Ra~~Lr 105 (290)
....|++|.+++|+.+ =||.+.- ++.+..+.++.+. ++...+|+.+.
T Consensus 5 fl~~plivf~ifVap~WL~lHY~sk~-~~~~gLs~~d~~~L~~L~~~a~rm~ 55 (75)
T PF06667_consen 5 FLFVPLIVFMIFVAPIWLILHYRSKW-KSSQGLSEEDEQRLQELYEQAERME 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567888888888765 6999874 3334444333322 55566677665
No 8
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.59 E-value=78 Score=25.19 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHHHH---HHHHHHhhcCCCCCChh-hhhhhhHHHHHHHHh
Q 022876 58 WVLIPLSVVMVLIGIL---RYFVSKLMRSSQVPDPK-IVKEGQVIVRARNLR 105 (290)
Q Consensus 58 WVllPI~ivmilvGiL---Rhyvt~Ll~s~kk~~~~-~vre~q~L~Ra~~Lr 105 (290)
...+|++|.|++|+-+ =||.+.=-.+ +..+.+ .-+=.+...+|+.++
T Consensus 5 fl~~PliiF~ifVaPiWL~LHY~sk~~~~-~~Ls~~d~~~L~~L~~~A~rm~ 55 (75)
T PRK09458 5 FLAIPLTIFVLFVAPIWLWLHYRSKRQGS-QGLSQEEQQRLAQLTEKAERMR 55 (75)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999865 4998743333 223322 222355667777765
No 9
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=35.22 E-value=61 Score=34.27 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhhcCCccccccCCCCcchhccCCCChhHHHHHH
Q 022876 112 SPKSFRARRVYFCNEENGLLHVPKGQAQNAQAQMFSDPNMAMDMM 156 (290)
Q Consensus 112 ~~~sF~~Rk~~~~~~~~G~~~~~~~~~~~~~~npm~DP~~Mm~Mm 156 (290)
|-+|+++-|+. -..-.|+|.+. + +-|+.||+..+++.
T Consensus 214 PvAs~eaIK~L-GTNGGGff~aN-----S--AhPfENPt~~sN~~ 250 (552)
T PF03814_consen 214 PVASQEAIKQL-GTNGGGFFGAN-----S--AHPFENPTPLSNFL 250 (552)
T ss_pred ccHHHHHHHHh-ccCCCcccCCC-----C--CCCCCCChHHHHHH
Confidence 66888887765 22255666532 1 24788888765443
No 10
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.74 E-value=18 Score=37.86 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=9.4
Q ss_pred cCccchhhhhhcc
Q 022876 31 KSSTHRHRHRYRA 43 (290)
Q Consensus 31 ~~~~~~~~~~~~~ 43 (290)
..-.-||||||.-
T Consensus 451 ~~v~ERHRHRYEv 463 (533)
T COG0504 451 DEIYERHRHRYEV 463 (533)
T ss_pred Ceeeeeccchhhc
Confidence 4445699999964
No 11
>PRK01844 hypothetical protein; Provisional
Probab=27.70 E-value=1.1e+02 Score=24.20 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHH------HHHHHHHhhcCCCCCChhhhh
Q 022876 58 WVLIPLSVVMVLIGI------LRYFVSKLMRSSQVPDPKIVK 93 (290)
Q Consensus 58 WVllPI~ivmilvGi------LRhyvt~Ll~s~kk~~~~~vr 93 (290)
|+.+=|.|+.+++|+ -|.|....++..++.+-+.+|
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir 45 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLK 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 444444556666664 588888888887777666555
No 12
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=27.57 E-value=68 Score=33.99 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhhhh-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHhhcCCcccccc
Q 022876 56 RDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKE-GQVIVRARNLRAGANFISPKSFRARRVYFCNEENGLLHVP 134 (290)
Q Consensus 56 R~WVllPI~ivmilvGiLRhyvt~Ll~s~kk~~~~~vre-~q~L~Ra~~Lr~n~~~L~~~sF~~Rk~~~~~~~~G~~~~~ 134 (290)
-.|||+||++|.-++=+.---...+ ........+.. .|.+. .=|-+|.++-|+. ...-.|+|.+.
T Consensus 178 ~l~vLLPlS~i~Al~lv~qGvpQt~---~~~~~v~tleg~~Q~I~----------~GPvASqeAIK~L-GTNGGGff~aN 243 (563)
T TIGR00680 178 ILRILLPISLVGAILLLVQGVPQNL---AGPAQVNTLEGATQLIP----------RGPVASQEAIKEL-GTNGGGFFNIN 243 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc---CCCceeEeccCceeeec----------CCchHhHHHHHHh-ccCCCcCCCCC
Confidence 3689999999886654332111111 11111111211 22221 1256888887764 33366666532
Q ss_pred CCCCcchhccCCCChhHHHH
Q 022876 135 KGQAQNAQAQMFSDPNMAMD 154 (290)
Q Consensus 135 ~~~~~~~~~npm~DP~~Mm~ 154 (290)
. +-|+.||+..++
T Consensus 244 S-------AHPfENPt~ltN 256 (563)
T TIGR00680 244 S-------AHPFENPTNFAN 256 (563)
T ss_pred C-------CCCCCCCcHHHH
Confidence 1 236777776543
No 13
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=27.39 E-value=54 Score=24.98 Aligned_cols=15 Identities=33% Similarity=0.755 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHH
Q 022876 59 VLIPLSVVMVLIGIL 73 (290)
Q Consensus 59 VllPI~ivmilvGiL 73 (290)
.++|++|++++||+.
T Consensus 6 ~Lipvsi~l~~v~l~ 20 (58)
T COG3197 6 ILIPVSILLGAVGLG 20 (58)
T ss_pred eHHHHHHHHHHHHHH
Confidence 589999999999975
No 14
>PRK01110 rpmF 50S ribosomal protein L32; Validated
Probab=27.10 E-value=25 Score=26.40 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=24.2
Q ss_pred hhhhcccCccchhhhhhccccccccccccccccch
Q 022876 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTAIRDWV 59 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~L~LDp~IR~WV 59 (290)
.|||.|||.++..|--+..... .+..||+--.|.
T Consensus 4 PKrK~Sksr~~~RRa~~~~~~~-~~~~c~~cg~~~ 37 (60)
T PRK01110 4 PKRKTSKSKRRMRRSHWKLTAP-TLSVDKTTGEYH 37 (60)
T ss_pred CcCccchhhchhhhhhhhccCC-ceeEcCCCCcee
Confidence 4788999988877766755544 588888766554
No 15
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=27.02 E-value=85 Score=25.07 Aligned_cols=28 Identities=14% Similarity=0.478 Sum_probs=23.9
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 022876 56 RDW-VLIPLSVVMVLIGILRYFVSKLMRS 83 (290)
Q Consensus 56 R~W-VllPI~ivmilvGiLRhyvt~Ll~s 83 (290)
|.| +.+|+++.+++++.+=-++..++-.
T Consensus 44 r~yAi~lP~~lll~~~~~vg~f~g~vmik 72 (78)
T PF07297_consen 44 REYAIILPIFLLLLGLSGVGTFLGYVMIK 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 778 7999999999999999888776644
No 16
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=59 Score=28.93 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=33.0
Q ss_pred cchhhhhhcccccccccccc------------ccccchHHHHHHHHHHHHHHHHHHH
Q 022876 34 THRHRHRYRASMAEDLVLDT------------AIRDWVLIPLSVVMVLIGILRYFVS 78 (290)
Q Consensus 34 ~~~~~~~~~~~~~~~L~LDp------------~IR~WVllPI~ivmilvGiLRhyvt 78 (290)
.-||+|++-+...+++++|. -+-+|-..||.-.||.. |||.+
T Consensus 93 ~WrHtH~F~~egg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~---Rhs~l 146 (153)
T COG4276 93 NWRHTHNFVDEGGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRS---RHSTL 146 (153)
T ss_pred eeEEEeeeecCCCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHH---HHHHH
Confidence 47999999999999999986 24488888888888753 67654
No 17
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.17 E-value=80 Score=27.94 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCCCCcc-chhhhHHHHHHHhhhhHHHHHH
Q 022876 203 LSTVDVS-YVSSRSWYFLNLFGLRGLFSLI 231 (290)
Q Consensus 203 l~dLDvs-wVSSlSWYFLnlFGLr~vy~Ll 231 (290)
.|.||.+ |.+-+.|.+++++.|--+++.+
T Consensus 22 mp~ld~~t~~~q~~~~lI~F~iL~~ll~k~ 51 (181)
T PRK13454 22 MPQLDFSTFPNQIFWLLVTLVAIYFVLTRV 51 (181)
T ss_pred CCCCcHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 6889995 8889999888887776666554
No 18
>PLN02563 aminoacyl-tRNA ligase
Probab=22.50 E-value=47 Score=37.02 Aligned_cols=19 Identities=26% Similarity=0.809 Sum_probs=13.2
Q ss_pred CCCCCCccchhhhHHHHHHHh
Q 022876 202 DLSTVDVSYVSSRSWYFLNLF 222 (290)
Q Consensus 202 ~l~dLDvswVSSlSWYFLnlF 222 (290)
|+..||+ |++| ||||+...
T Consensus 579 etDtmDt-w~~S-swy~~r~~ 597 (963)
T PLN02563 579 ETNTMPQ-WAGS-CWYYLRFM 597 (963)
T ss_pred CCCcCCc-hhhc-cHHHHHHh
Confidence 4566665 6777 89998643
Done!