Query 022876
Match_columns 290
No_of_seqs 119 out of 182
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 12:37:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022876.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022876hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s1ma1 c.23.16.1 (A:287-544) 28.6 4.8 0.00035 34.8 -0.5 10 34-43 178-187 (258)
2 d1vcoa1 c.23.16.1 (A:298-547) 25.8 5.6 0.00041 34.1 -0.5 10 33-42 168-177 (250)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 25.0 13 0.00098 26.7 1.6 14 57-70 74-87 (100)
4 d1jk0a_ a.25.1.2 (A:) Ribonucl 23.9 5.1 0.00037 35.0 -1.2 33 32-64 35-67 (334)
5 d1jb0i_ f.23.17.1 (I:) Subunit 15.3 63 0.0046 20.0 3.0 21 57-77 11-34 (38)
6 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 9.7 36 0.0026 22.8 0.4 29 25-54 6-34 (58)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.5 61 0.0044 23.3 1.7 14 57-70 80-93 (107)
8 d2j0151 g.41.8.5 (5:2-60) Ribo 9.4 29 0.0021 23.3 -0.2 29 25-54 6-34 (59)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 8.3 84 0.0061 21.9 2.0 15 57-71 65-79 (91)
10 d2axte1 f.23.38.1 (E:3-84) Cyt 8.2 71 0.0052 22.9 1.6 21 53-73 13-34 (82)
No 1
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.58 E-value=4.8 Score=34.80 Aligned_cols=10 Identities=60% Similarity=1.159 Sum_probs=7.6
Q ss_pred cchhhhhhcc
Q 022876 34 THRHRHRYRA 43 (290)
Q Consensus 34 ~~~~~~~~~~ 43 (290)
.-||||||.-
T Consensus 178 ~ERHRHRYev 187 (258)
T d1s1ma1 178 VERHRHRYEV 187 (258)
T ss_dssp EEEEEECCEE
T ss_pred hhhhhcchhh
Confidence 3689999864
No 2
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=25.79 E-value=5.6 Score=34.14 Aligned_cols=10 Identities=60% Similarity=1.079 Sum_probs=7.9
Q ss_pred ccchhhhhhc
Q 022876 33 STHRHRHRYR 42 (290)
Q Consensus 33 ~~~~~~~~~~ 42 (290)
-.-||||||.
T Consensus 168 i~ERhRHRYe 177 (250)
T d1vcoa1 168 VLERHRHRYE 177 (250)
T ss_dssp EEEEEEESEE
T ss_pred Eeehccccee
Confidence 4568999996
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.99 E-value=13 Score=26.72 Aligned_cols=14 Identities=14% Similarity=0.812 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHH
Q 022876 57 DWVLIPLSVVMVLI 70 (290)
Q Consensus 57 ~WVllPI~ivmilv 70 (290)
.|.++|+.|++++.
T Consensus 74 iWTviP~lILi~l~ 87 (100)
T d3dtub2 74 AWTIVPIVILVAIG 87 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999888764
No 4
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=23.88 E-value=5.1 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=26.9
Q ss_pred CccchhhhhhccccccccccccccccchHHHHH
Q 022876 32 SSTHRHRHRYRASMAEDLVLDTAIRDWVLIPLS 64 (290)
Q Consensus 32 ~~~~~~~~~~~~~~~~~L~LDp~IR~WVllPI~ 64 (290)
+..|-|||+.++.-.++.+|-+.=+-||++||=
T Consensus 35 ~~~~~~~~~~~~~~~~e~~l~~~~~r~~~~Pik 67 (334)
T d1jk0a_ 35 KSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIK 67 (334)
T ss_dssp HHCHHHHHHHHHHGGGCGGGSCCTTCCSCCSCS
T ss_pred HhhhhhHHHhHhhhcCCcccCCCCCceeEeCCc
Confidence 345678888888888888888888899999984
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=15.31 E-value=63 Score=20.02 Aligned_cols=21 Identities=29% Similarity=0.855 Sum_probs=14.4
Q ss_pred cchHHHHHHH---HHHHHHHHHHH
Q 022876 57 DWVLIPLSVV---MVLIGILRYFV 77 (290)
Q Consensus 57 ~WVllPI~iv---milvGiLRhyv 77 (290)
-|+++|++-. .+.+|+|=-|+
T Consensus 11 PwI~iPvv~wl~p~vvMglLFiyI 34 (38)
T d1jb0i_ 11 PWIFIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHheee
Confidence 4999998743 34667776665
No 6
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.73 E-value=36 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=18.9
Q ss_pred hhhhcccCccchhhhhhccccccccccccc
Q 022876 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTA 54 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~L~LDp~ 54 (290)
.|||.|+|.++..|--|..... .|.-||+
T Consensus 6 PKrk~SksRr~~RRsh~~l~~p-~l~~C~~ 34 (58)
T d2zjrz1 6 PKKKTSKSKRDMRRSHHALTAP-NLTECPQ 34 (58)
T ss_dssp CSSCCCTTHHHHHTTTCCCCCC-CCEECTT
T ss_pred CCCccCcccchhhhhhhhhcCC-ceeECCC
Confidence 3677888877766655655544 5666665
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.47 E-value=61 Score=23.34 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=11.6
Q ss_pred cchHHHHHHHHHHH
Q 022876 57 DWVLIPLSVVMVLI 70 (290)
Q Consensus 57 ~WVllPI~ivmilv 70 (290)
.|.++|++|++++.
T Consensus 80 ~WTviP~lIL~~la 93 (107)
T d3ehbb2 80 IWTLVPVLILVAIG 93 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 69999988887764
No 8
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=9.39 E-value=29 Score=23.31 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=18.1
Q ss_pred hhhhcccCccchhhhhhccccccccccccc
Q 022876 25 QKRKKSKSSTHRHRHRYRASMAEDLVLDTA 54 (290)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~L~LDp~ 54 (290)
.|||.|+|.+...|--|..... .|.-||+
T Consensus 6 PKrk~Sksr~~~RRsh~~l~~p-~l~~C~~ 34 (59)
T d2j0151 6 PKKKTSKARRDARRSHHALTPP-TLVPCPE 34 (59)
T ss_dssp CSSCCCHHHHHHHHGGGCCCCC-CCBCCSS
T ss_pred CCCcccchhchhhhccccccCC-ceeECCC
Confidence 3677777776665555665543 5766665
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.26 E-value=84 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.239 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHHH
Q 022876 57 DWVLIPLSVVMVLIG 71 (290)
Q Consensus 57 ~WVllPI~ivmilvG 71 (290)
.|-++|++|++++..
T Consensus 65 ~WtiIP~iil~~iav 79 (91)
T d1fftb2 65 VVWTVPILIIIFLAV 79 (91)
T ss_dssp HTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 477799999887754
No 10
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.17 E-value=71 Score=22.86 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=13.8
Q ss_pred cccccchHHHHHHHHHH-HHHH
Q 022876 53 TAIRDWVLIPLSVVMVL-IGIL 73 (290)
Q Consensus 53 p~IR~WVllPI~ivmil-vGiL 73 (290)
-.|||||.=-|+|=.++ .|.|
T Consensus 13 tsiRYWvIHsiTIPslFiaGwl 34 (82)
T d2axte1 13 TSVRYWVIHSITIPALFIAGWL 34 (82)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeEEEEEeecccHHHHhhhh
Confidence 36999998777775443 3433
Done!