Query 022880
Match_columns 290
No_of_seqs 266 out of 935
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.7 1.8E-17 6.1E-22 120.9 2.2 70 29-123 7-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.5 1.5E-15 5.2E-20 110.6 3.2 35 92-126 7-41 (77)
3 1zzk_A Heterogeneous nuclear r 99.4 9.3E-14 3.2E-18 102.3 6.2 76 162-237 4-79 (82)
4 1x4n_A FAR upstream element bi 99.4 2.4E-13 8.4E-18 102.3 7.8 76 164-239 14-89 (92)
5 1wvn_A Poly(RC)-binding protei 99.4 1.1E-13 3.8E-18 101.9 4.8 75 162-236 3-77 (82)
6 2hh3_A KH-type splicing regula 99.4 2.6E-13 9E-18 104.6 6.3 78 164-241 10-87 (106)
7 2p2r_A Poly(RC)-binding protei 99.4 1.3E-13 4.4E-18 100.1 4.1 71 164-234 4-74 (76)
8 2axy_A Poly(RC)-binding protei 99.4 3.2E-13 1.1E-17 97.2 3.8 69 164-234 4-72 (73)
9 2hh2_A KH-type splicing regula 99.4 1E-12 3.5E-17 101.6 6.7 74 164-237 6-82 (107)
10 1j5k_A Heterogeneous nuclear r 99.4 3.5E-13 1.2E-17 100.8 3.9 75 163-237 12-86 (89)
11 1dtj_A RNA-binding neurooncolo 99.3 7.8E-13 2.7E-17 95.8 5.1 70 165-234 3-75 (76)
12 2dgr_A Ring finger and KH doma 99.3 1.2E-12 4E-17 96.6 5.9 72 163-237 8-79 (83)
13 1x4m_A FAR upstream element bi 99.3 9.5E-13 3.2E-17 99.4 5.5 76 164-239 14-91 (94)
14 1ec6_A RNA-binding protein NOV 99.3 1.6E-12 5.5E-17 96.7 4.8 74 164-237 2-78 (87)
15 2opv_A KHSRP protein; KH domai 99.3 4.2E-12 1.4E-16 94.0 6.5 71 164-234 13-85 (85)
16 2d9n_A Cleavage and polyadenyl 99.3 3.3E-12 1.1E-16 92.8 4.7 62 29-126 5-66 (77)
17 2cqe_A KIAA1064 protein; CCCH 99.2 4.6E-12 1.6E-16 96.2 3.4 53 29-121 8-60 (98)
18 1we8_A Tudor and KH domain con 99.2 1.4E-11 4.9E-16 94.6 5.8 73 164-236 14-88 (104)
19 2rhk_C Cleavage and polyadenyl 99.1 1E-11 3.5E-16 89.0 2.0 57 29-121 11-67 (72)
20 2ctl_A Vigilin; K homology typ 99.1 6.4E-11 2.2E-15 89.8 6.6 74 164-237 16-90 (97)
21 2cte_A Vigilin; K homology typ 99.1 1.6E-10 5.6E-15 87.0 6.0 72 164-237 16-87 (94)
22 1vig_A Vigilin; RNA-binding pr 99.1 1.4E-10 4.7E-15 82.9 4.7 66 164-231 4-69 (71)
23 2ctm_A Vigilin; K homology typ 99.0 3.8E-10 1.3E-14 85.2 6.9 74 163-237 15-88 (95)
24 2jvz_A KH type-splicing, FAR u 99.0 1.4E-10 4.6E-15 95.9 4.6 73 165-237 91-163 (164)
25 1j4w_A FUSE binding protein; s 99.0 2E-10 6.9E-15 96.0 4.2 74 164-237 2-75 (174)
26 3krm_A Insulin-like growth fac 99.0 3.9E-10 1.3E-14 93.2 5.2 73 165-237 3-76 (163)
27 2d9m_A Zinc finger CCCH-type d 99.0 5E-11 1.7E-15 83.3 -0.1 30 258-287 19-48 (69)
28 2anr_A Neuro-oncological ventr 99.0 2.8E-10 9.6E-15 95.4 4.4 73 164-236 103-177 (178)
29 2ctk_A Vigilin; K homology typ 99.0 3.7E-10 1.3E-14 86.6 4.3 70 165-236 17-86 (104)
30 2jzx_A Poly(RC)-binding protei 98.9 3.6E-10 1.2E-14 93.1 3.9 71 164-234 88-159 (160)
31 2jvz_A KH type-splicing, FAR u 98.9 7.5E-10 2.6E-14 91.3 5.6 73 165-237 2-76 (164)
32 3krm_A Insulin-like growth fac 98.9 7.1E-10 2.4E-14 91.6 5.4 74 164-237 84-159 (163)
33 1j4w_A FUSE binding protein; s 98.9 7E-10 2.4E-14 92.7 4.7 69 164-232 103-174 (174)
34 2anr_A Neuro-oncological ventr 98.9 6.6E-10 2.3E-14 93.1 4.3 75 163-237 4-81 (178)
35 2cqe_A KIAA1064 protein; CCCH 98.8 1.9E-09 6.4E-14 81.7 4.2 27 92-119 8-34 (98)
36 2jzx_A Poly(RC)-binding protei 98.8 1.8E-09 6.3E-14 88.8 3.5 69 165-235 5-73 (160)
37 2d9n_A Cleavage and polyadenyl 98.8 2.6E-09 8.8E-14 77.4 2.5 28 92-120 5-32 (77)
38 2qnd_A FMR1 protein; KH domain 98.8 4.2E-09 1.4E-13 85.4 3.9 70 166-235 68-143 (144)
39 2d9m_A Zinc finger CCCH-type d 98.7 2.2E-09 7.6E-14 75.0 0.4 36 91-127 14-49 (69)
40 2ctj_A Vigilin; K homology typ 98.7 2E-08 6.7E-13 75.7 5.3 74 162-237 14-88 (95)
41 3d2q_A Muscleblind-like protei 98.7 5.3E-09 1.8E-13 74.3 1.4 64 32-125 4-68 (70)
42 2rhk_C Cleavage and polyadenyl 98.6 8.6E-09 3E-13 73.6 0.7 27 93-120 12-38 (72)
43 2ctf_A Vigilin; K homology typ 98.5 1E-07 3.6E-12 72.6 5.9 68 165-237 27-95 (102)
44 2e5s_A Otthump00000018578; ZF- 98.5 5.1E-09 1.7E-13 79.3 -1.8 65 32-126 18-83 (98)
45 3d2q_A Muscleblind-like protei 98.5 2.8E-08 9.5E-13 70.6 1.9 30 257-287 40-69 (70)
46 2cpq_A FragIle X mental retard 98.5 7.2E-08 2.5E-12 71.6 3.2 69 164-237 14-84 (91)
47 2e5s_A Otthump00000018578; ZF- 98.3 1.7E-07 5.9E-12 70.8 2.4 30 257-287 54-83 (98)
48 2yqr_A KIAA0907 protein; struc 98.3 1.1E-06 3.9E-11 68.5 6.6 72 164-235 11-100 (119)
49 3d2n_A Muscleblind-like protei 98.3 2.6E-07 8.9E-12 67.6 2.1 64 30-125 5-69 (83)
50 1k1g_A SF1-BO isoform; splicin 98.2 1.3E-06 4.6E-11 69.4 6.0 74 162-235 4-100 (131)
51 3n89_A Defective in GERM LINE 98.2 1.7E-06 5.7E-11 80.2 6.0 69 163-231 28-103 (376)
52 2rpp_A Muscleblind-like protei 97.9 3.9E-06 1.3E-10 62.1 1.6 62 31-124 14-76 (89)
53 2e3u_A PH-DIM2P, hypothetical 97.8 3.8E-06 1.3E-10 72.5 0.9 64 165-233 34-102 (219)
54 3d2n_A Muscleblind-like protei 97.8 8.7E-06 3E-10 59.5 2.4 27 260-287 44-70 (83)
55 3v69_A Protein filia; RNA-bind 97.8 4.6E-05 1.6E-09 60.1 6.3 69 164-233 55-123 (140)
56 3n89_A Defective in GERM LINE 97.7 2.3E-05 7.8E-10 72.6 5.2 70 164-233 185-260 (376)
57 2e3u_A PH-DIM2P, hypothetical 97.7 1.2E-05 4E-10 69.4 2.6 55 175-236 139-193 (219)
58 2bl5_A MGC83862 protein, quaki 97.7 2.6E-05 8.7E-10 62.5 3.7 71 165-235 2-102 (140)
59 1tua_A Hypothetical protein AP 97.7 3.2E-05 1.1E-09 65.2 4.3 66 166-236 5-75 (191)
60 2qnd_A FMR1 protein; KH domain 97.4 5.4E-05 1.8E-09 61.0 2.7 61 164-227 3-63 (144)
61 2rpp_A Muscleblind-like protei 97.3 0.00012 4E-09 54.1 3.0 27 260-287 52-78 (89)
62 3u9g_A Zinc finger CCCH-type a 97.3 0.00012 4.2E-09 62.5 3.0 21 261-282 177-197 (229)
63 1tua_A Hypothetical protein AP 97.2 7.8E-05 2.7E-09 62.8 1.4 54 174-234 107-160 (191)
64 3u1k_A Polyribonucleotide nucl 97.1 0.00011 3.7E-09 72.7 1.2 62 165-232 567-629 (630)
65 2fc6_A Nuclear, target of EGR1 96.5 0.001 3.4E-08 42.9 1.9 28 31-58 17-44 (50)
66 4aid_A Polyribonucleotide nucl 96.5 0.0006 2.1E-08 68.2 1.2 67 166-238 571-638 (726)
67 2fc6_A Nuclear, target of EGR1 94.9 0.007 2.4E-07 39.0 0.9 28 94-121 17-44 (50)
68 3u9g_A Zinc finger CCCH-type a 94.8 0.012 4E-07 50.3 2.3 45 32-121 149-197 (229)
69 3u1l_A PRE-mRNA-splicing facto 93.7 0.0087 3E-07 52.1 -0.9 22 260-281 71-92 (240)
70 3u1l_A PRE-mRNA-splicing facto 92.2 0.026 9E-07 49.0 -0.0 26 34-60 70-95 (240)
71 3cdi_A Polynucleotide phosphor 91.4 0.036 1.2E-06 55.5 0.0 67 165-237 560-627 (723)
72 1e3p_A Guanosine pentaphosphat 90.5 0.025 8.6E-07 57.0 -2.1 60 167-232 600-660 (757)
73 3v33_A Ribonuclease ZC3H12A; r 82.9 0.47 1.6E-05 40.5 1.8 29 255-285 188-216 (223)
74 3v33_A Ribonuclease ZC3H12A; r 82.8 0.45 1.5E-05 40.6 1.6 24 32-58 190-213 (223)
75 2lhn_A Nuclear polyadenylated 82.4 0.29 1E-05 34.9 0.0 21 34-58 9-29 (80)
76 2cxc_A NUSA; transcription ter 78.5 0.66 2.3E-05 36.9 1.2 37 165-201 36-72 (144)
77 2asb_A Transcription elongatio 67.3 1.7 5.7E-05 37.8 1.0 39 164-202 183-221 (251)
78 2cxc_A NUSA; transcription ter 66.1 0.63 2.1E-05 37.0 -1.7 38 164-201 102-139 (144)
79 1hh2_P NUSA, N utilization sub 60.2 2.9 9.8E-05 38.0 1.3 39 164-202 302-340 (344)
80 2kqb_A Aprataxin and PNK-like 59.1 6 0.00021 28.5 2.5 11 107-117 57-67 (89)
81 1k0r_A NUSA; two component arr 57.1 3.3 0.00011 37.9 1.1 39 164-202 306-344 (366)
82 2lhn_A Nuclear polyadenylated 55.1 3.5 0.00012 29.3 0.0 8 275-282 44-51 (80)
83 2kuo_A Aprataxin and PNK-like 49.0 6.6 0.00023 28.4 1.4 11 106-116 61-71 (91)
84 1wh9_A 40S ribosomal protein S 47.6 3.8 0.00013 29.8 -0.1 29 165-193 35-63 (92)
85 2pt7_G HP1451, hypothetical pr 30.3 13 0.00045 29.6 0.5 32 164-195 32-63 (152)
86 1ans_A Neurotoxin III; NMR {An 29.3 32 0.0011 18.6 1.8 15 262-277 4-18 (27)
87 3u5c_D RP13, YS3, 40S ribosoma 27.8 21 0.00072 30.6 1.4 29 165-193 44-72 (240)
88 2asb_A Transcription elongatio 26.9 10 0.00035 32.8 -0.8 28 174-201 126-154 (251)
89 3j20_C 30S ribosomal protein S 21.7 20 0.00069 30.0 0.1 27 166-192 41-67 (210)
90 3iz6_B 40S ribosomal protein S 20.4 24 0.00083 29.9 0.3 29 165-193 44-72 (227)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.66 E-value=1.8e-17 Score=120.89 Aligned_cols=70 Identities=29% Similarity=0.677 Sum_probs=29.0
Q ss_pred CCccccccccccccCCCCCCCCCceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 022880 29 GVGSKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEG 108 (290)
Q Consensus 29 ~~~~Kt~lC~~~~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~ 108 (290)
+..|||+||++|+.+|.|+||++|+|+|++.+ +... ...+.+++++|..|...|.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e----------~~~~---------------~~~~~~k~~~C~~f~~~G~ 61 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGE----------LRQA---------------NRHPKYKTELCHKFKLQGR 61 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC----------GGGT---------------C------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChh----------hccc---------------cccccccCCcccchhhCcC
Confidence 67899999999988899999999999998621 1100 1236788999999999999
Q ss_pred CCCCCcccccccccc
Q 022880 109 CKFGDKCHFAHGEWE 123 (290)
Q Consensus 109 C~~G~~C~f~H~~~e 123 (290)
|+||.+|+|+|...|
T Consensus 62 C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 62 CPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------
T ss_pred CCCcCcCCCCCCCCC
Confidence 999999999997644
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.55 E-value=1.5e-15 Score=110.56 Aligned_cols=35 Identities=34% Similarity=0.795 Sum_probs=30.7
Q ss_pred CCcccccccccccccccCCCCCcccccccccccCC
Q 022880 92 PTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGK 126 (290)
Q Consensus 92 ~~~~ktr~C~~~~~~g~C~~G~~C~f~H~~~el~~ 126 (290)
.+.+|+++|.+|...|.|+||++|+|+|...+++.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~ 41 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ 41 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc
Confidence 46889999999988999999999999998766654
No 3
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.45 E-value=9.3e-14 Score=102.33 Aligned_cols=76 Identities=30% Similarity=0.498 Sum_probs=69.6
Q ss_pred CCCceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 162 ~~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
++..+.+|.||.+.+|.|||++|++|++|++.||++|+|.+..++..++.|+|+|++++++.|..+|.+++.+...
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 4567899999999999999999999999999999999998766677789999999999999999999999987644
No 4
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.44 E-value=2.4e-13 Score=102.26 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=69.9
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCCCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGPAH 239 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~~p 239 (290)
..+.+|.||.+.+|.|||++|.+|++|++.||++|+|.+...+..++.|+|+|++++++.|..+|.+++.+....|
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~~p 89 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRSGP 89 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCC
Confidence 5789999999999999999999999999999999999876666678999999999999999999999999877653
No 5
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=1.1e-13 Score=101.87 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=67.0
Q ss_pred CCCceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcC
Q 022880 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 236 (290)
Q Consensus 162 ~~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~ 236 (290)
+...+.+|.||.+.+|.|||++|++|+.|++.||++|+|.+..++..++.|+|+|++++++.|..+|.+++.+..
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 77 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 346789999999999999999999999999999999999876667779999999999999999999999987763
No 6
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.6e-13 Score=104.64 Aligned_cols=78 Identities=14% Similarity=0.330 Sum_probs=67.0
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCCCCCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGPAHAK 241 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~~p~~ 241 (290)
..+.+|.||.+.++.||||+|++|++|+++|+++|+|.+...+..+|.|+|+|++++++.|+.+|.+++.+.+..|+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g~~g 87 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPG 87 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-----
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccccCCCC
Confidence 357899999999999999999999999999999999986665667899999999999999999999999998887543
No 7
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=100.08 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=66.3
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHh
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 234 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~ 234 (290)
..+.+|.||.+.+|.|||++|++|+.|++.||++|+|.+..++..++.|.|+|++++++.|..+|.+++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999998776777899999999999999999999998864
No 8
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.36 E-value=3.2e-13 Score=97.23 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=63.8
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHh
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 234 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~ 234 (290)
..+.+|.||.+.+|.|||++|++|++|++.||++|+|.+. +..+|.++|.|+++++..|..+|.+.+.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999765 45689999999999999999999999876
No 9
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=101.60 Aligned_cols=74 Identities=32% Similarity=0.443 Sum_probs=65.7
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC---CCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE---ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~---~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
..+.+|.||.+.++.|||++|++|++|++.|||+|+|.+.. .+..++.|+|+|+.++++.|+.+|.+++.+...
T Consensus 6 g~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 6 GGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLC 82 (107)
T ss_dssp -CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCCC
T ss_pred CCeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcccc
Confidence 34789999999999999999999999999999999997652 345679999999999999999999999987653
No 10
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.35 E-value=3.5e-13 Score=100.76 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=68.7
Q ss_pred CCceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 163 ~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
+..+.+|.||.+.+|.|||++|++|++|++.||++|+|.+..++..++.|+|+|++++++.|+.+|.+++.+...
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999999999999998766677889999999999999999999999987643
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.34 E-value=7.8e-13 Score=95.80 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=62.6
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccC---CCCCCcceeEEcCCHHHHHHHHHHHHHHHHh
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH---EADPNLRNIELEGSFEQIKQASAMVRELIVR 234 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~---~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~ 234 (290)
.+.+|.||.+.+|.|||++|++|+.|++.||++|+|.+. .++..++.|.|+|++++++.|..+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999754 2455689999999999999999999988753
No 12
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=96.56 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=64.0
Q ss_pred CCceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 163 ~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
...+..|.||.+.+|+||||+|++|++|+++||++|+|...+ .++.++|+|++++++.|..+|.+.+.....
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~r~~ 79 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITLRSG 79 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHSCCS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhcccC
Confidence 467899999999999999999999999999999999997533 257899999999999999999998766554
No 13
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.34 E-value=9.5e-13 Score=99.41 Aligned_cols=76 Identities=32% Similarity=0.444 Sum_probs=68.3
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCC--CCCcceeEEcCCHHHHHHHHHHHHHHHHhcCCCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEA--DPNLRNIELEGSFEQIKQASAMVRELIVRIGPAH 239 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~--~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~~p 239 (290)
..+.+|.||.+.+|.||||+|++|+.|++.||++|+|.+... ...+|.|.|+|++++++.|+.+|.+++.+.+..|
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~~ 91 (94)
T 1x4m_A 14 NAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGSGP 91 (94)
T ss_dssp CEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCSSCS
T ss_pred cEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccCCCC
Confidence 678999999999999999999999999999999999976533 3468999999999999999999999998877653
No 14
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=1.6e-12 Score=96.69 Aligned_cols=74 Identities=24% Similarity=0.366 Sum_probs=66.1
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC---CCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE---ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~---~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
..+.+|.||.+.+|.|||++|.+|+.|++.||++|+|.+.. ++..++.|+|+|+++++..|..+|.+++.+.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999997642 456689999999999999999999999887544
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.29 E-value=4.2e-12 Score=94.03 Aligned_cols=71 Identities=25% Similarity=0.408 Sum_probs=63.5
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCC--CCCcceeEEcCCHHHHHHHHHHHHHHHHh
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEA--DPNLRNIELEGSFEQIKQASAMVRELIVR 234 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~--~~~~r~v~i~G~~~~i~~A~~~I~~~i~~ 234 (290)
..+..|.||.+.+|.|||++|++|+.|++.||++|.|.+... ...+|.|.|+|++++++.|..+|.+++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999976432 45689999999999999999999988753
No 16
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=92.83 Aligned_cols=62 Identities=26% Similarity=0.542 Sum_probs=50.3
Q ss_pred CCccccccccccccCCCCCCCCCceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 022880 29 GVGSKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEG 108 (290)
Q Consensus 29 ~~~~Kt~lC~~~~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~ 108 (290)
...+|+.+|++|++ |.|.+|++|.|+|++. ..++.+|.+|.+.|.
T Consensus 5 ~~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~----------------------------------~~~~~~C~~f~~~G~ 49 (77)
T 2d9n_A 5 SSGEKTVVCKHWLR-GLCKKGDQCEFLHEYD----------------------------------MTKMPECYFYSKFGE 49 (77)
T ss_dssp CSCCTTSBCHHHHT-TCCSCTTSSSSBCSCC----------------------------------TTTSCBCHHHHHTCC
T ss_pred CCCCcceeCHhHcc-CcCCCCCCCCCccccc----------------------------------cCcCCCCcccCCCCc
Confidence 45679999999997 8999999999999861 124558998888799
Q ss_pred CCCCCcccccccccccCC
Q 022880 109 CKFGDKCHFAHGEWELGK 126 (290)
Q Consensus 109 C~~G~~C~f~H~~~el~~ 126 (290)
|. |++|+|+|...+...
T Consensus 50 C~-~~~C~f~H~~~~~~~ 66 (77)
T 2d9n_A 50 CS-NKECPFLHIDPESKI 66 (77)
T ss_dssp CC-CSSCSSBCCCTTSSC
T ss_pred cC-CCCeeccCCCccccC
Confidence 99 999999997744433
No 17
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.21 E-value=4.6e-12 Score=96.20 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=46.7
Q ss_pred CCccccccccccccCCCCCCCCCceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 022880 29 GVGSKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEG 108 (290)
Q Consensus 29 ~~~~Kt~lC~~~~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~ 108 (290)
.+.+|+.+|++|. .|.|.+|++|.|+|+ +.+|.+|.+.|.
T Consensus 8 ~~~~k~~lC~~f~-~G~C~~G~~C~f~H~---------------------------------------~~~C~~f~~~G~ 47 (98)
T 2cqe_A 8 ELPKKRELCKFYI-TGFCARAENCPYMHG---------------------------------------DFPCKLYHTTGN 47 (98)
T ss_dssp CCSCCCSBCTTTT-TTCCSCSTTCSSBSS---------------------------------------SSBCSHHHHTSC
T ss_pred CCCCCCccCcccc-cCcCCCCCCCCCCCC---------------------------------------CCcCcCcccCCc
Confidence 4668999999986 689999999999994 357999988999
Q ss_pred CCCCCcccccccc
Q 022880 109 CKFGDKCHFAHGE 121 (290)
Q Consensus 109 C~~G~~C~f~H~~ 121 (290)
|+||++|+|+|..
T Consensus 48 C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 48 CINGDDCMFSHDP 60 (98)
T ss_dssp CSSCTTCSSBCCC
T ss_pred CCCCCCCcccCCC
Confidence 9999999999953
No 18
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.20 E-value=1.4e-11 Score=94.61 Aligned_cols=73 Identities=25% Similarity=0.436 Sum_probs=64.4
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCC--CCcceeEEcCCHHHHHHHHHHHHHHHHhcC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEAD--PNLRNIELEGSFEQIKQASAMVRELIVRIG 236 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~--~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~ 236 (290)
..+.+|.||.+.+|.|||++|.+|+.|++.||++|+|.+.... ..++.|+|.|+.++++.|..+|.+++.+.+
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3578999999999999999999999999999999999765432 358999999999999999999999987543
No 19
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.14 E-value=1e-11 Score=88.96 Aligned_cols=57 Identities=26% Similarity=0.593 Sum_probs=48.0
Q ss_pred CCccccccccccccCCCCCCCCCceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 022880 29 GVGSKSKPCTKFFSTAGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEG 108 (290)
Q Consensus 29 ~~~~Kt~lC~~~~~~g~C~~G~~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~ 108 (290)
....|+.+|++|++ |.|.+|++|.|+|++ ...++.+|.+|.+.|.
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~----------------------------------~~~~~~~C~~f~~~G~ 55 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEY----------------------------------DMTKMSECYFYSKFGE 55 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCSC----------------------------------CTTSCCBCHHHHHHSC
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCcccc----------------------------------ccccCCcccccCCCCC
Confidence 56779999999997 799999999999975 1124568998887799
Q ss_pred CCCCCcccccccc
Q 022880 109 CKFGDKCHFAHGE 121 (290)
Q Consensus 109 C~~G~~C~f~H~~ 121 (290)
|.+ ++|.|.|..
T Consensus 56 C~~-~~C~y~H~~ 67 (72)
T 2rhk_C 56 CSN-KECPFLHID 67 (72)
T ss_dssp CSB-TTCCSBCCC
T ss_pred CCC-CCeeccCCC
Confidence 999 999999965
No 20
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=6.4e-11 Score=89.79 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=65.5
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC-CCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE-ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~-~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
..+..|.||.++++.|||++|++|+.|++.||++|+|.+.. +...++.|+|+|+.+++..|..+|..++.+.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999997643 334678999999999999999999999876543
No 21
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1.6e-10 Score=87.03 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=63.9
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
..+..|.||.+.++.|||+||.+|+.|+++||++|+|.+.+ ...+.|+|+|+++++..|..+|..++.+...
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 56899999999999999999999999999999999997532 2346899999999999999999999887554
No 22
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.05 E-value=1.4e-10 Score=82.88 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=59.3
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHH
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVREL 231 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~ 231 (290)
..+..|.||.++++.|||++|.+|+.|++.||++|.|.+.. ...+.|+|.|+.++++.|..+|.++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999997643 2568999999999999999999875
No 23
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=3.8e-10 Score=85.17 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=65.8
Q ss_pred CCceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 163 ~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
...+..|.||.+.++.|||++|.+|+.|++.||++|+|.+.. +.+.+.|+|+|.+++++.|..+|..++.+.+.
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999997542 23467899999999999999999999987765
No 24
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=95.86 Aligned_cols=73 Identities=15% Similarity=0.357 Sum_probs=66.4
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
.+.+|.||.+.+|.|||++|.+|+.|++.||++|.|.+...+..++.|+|+|+++++..|..+|.+++.+.+.
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 163 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 163 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhhhhC
Confidence 4578999999999999999999999999999999998766666689999999999999999999999987654
No 25
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.99 E-value=2e-10 Score=95.99 Aligned_cols=74 Identities=16% Similarity=0.371 Sum_probs=67.0
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
+.+.+|.||.+.+|.|||++|++|++|++.||++|+|.+.+.+..+|.|.|+|+++++..|..+|.+++.+.+.
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 35789999999999999999999999999999999997655566789999999999999999999999988754
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.98 E-value=3.9e-10 Score=93.17 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=66.9
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccC-CCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDH-EADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~-~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
.+.+|.||.+.+|.|||++|++|+.|++.||++|+|.+. .++..+|.|+|+|+++++..|..+|.+.+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999765 4677899999999999999999999999988743
No 27
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=5e-11 Score=83.31 Aligned_cols=30 Identities=40% Similarity=0.951 Sum_probs=28.4
Q ss_pred ccccCCCCCCCCCCCCCCCcCCCChhhhcc
Q 022880 258 KTKLCGNFAKGSCTFGDRCHFAHGAAELRK 287 (290)
Q Consensus 258 k~~~C~~~~~g~C~~g~~C~f~Hg~~el~~ 287 (290)
+++||.+|.+|.|+||++|.||||++|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 669999998899999999999999999996
No 28
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.97 E-value=2.8e-10 Score=95.40 Aligned_cols=73 Identities=32% Similarity=0.398 Sum_probs=65.1
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC--CCCCcceeEEcCCHHHHHHHHHHHHHHHHhcC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE--ADPNLRNIELEGSFEQIKQASAMVRELIVRIG 236 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~--~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~ 236 (290)
..+.+|.||.+.+|.|||++|.+|++|++.||++|+|.+.. ++..++.|+|+|+++++..|..+|.+++.+.+
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 57889999999999999999999999999999999997643 34567999999999999999999999998754
No 29
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=3.7e-10 Score=86.64 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=62.6
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcC
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 236 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~ 236 (290)
.+..|.||.+.++.|||+||.+|+.|++.||++|+|.+... ..+.|+|+|+.++++.|..+|..++.+.+
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 67899999999999999999999999999999999976433 34689999999999999999999987654
No 30
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=3.6e-10 Score=93.05 Aligned_cols=71 Identities=27% Similarity=0.431 Sum_probs=64.7
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeecc-CCCCCCcceeEEcCCHHHHHHHHHHHHHHHHh
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD-HEADPNLRNIELEGSFEQIKQASAMVRELIVR 234 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~-~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~ 234 (290)
..+.++.||.+.+|.|||++|.+|++|++.||++|+|.+ ..++..++.|+|+|+++++..|..+|.+.+.+
T Consensus 88 ~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 88 PVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp SEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999965 34566789999999999999999999999876
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.94 E-value=7.5e-10 Score=91.34 Aligned_cols=73 Identities=25% Similarity=0.378 Sum_probs=65.0
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC--CCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE--ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~--~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
.+.+|.||.+.+|.|||++|++|+.|++.||++|+|.+.. ++..+|.+.|+|+++++..|..+|.+++.+.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ 76 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999996432 345679999999999999999999999987654
No 32
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.94 E-value=7.1e-10 Score=91.57 Aligned_cols=74 Identities=26% Similarity=0.428 Sum_probs=64.6
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC-CCCC-cceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE-ADPN-LRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~-~~~~-~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
..+.+|.||.+.+|.|||++|.+|+.|++.||++|.|.+.. ++.. .+.|.|+|+++++..|..+|.+++.+...
T Consensus 84 ~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 84 KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999999996542 3333 45899999999999999999999988654
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.92 E-value=7e-10 Score=92.67 Aligned_cols=69 Identities=33% Similarity=0.550 Sum_probs=61.3
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC---CCCCcceeEEcCCHHHHHHHHHHHHHHH
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE---ADPNLRNIELEGSFEQIKQASAMVRELI 232 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~---~~~~~r~v~i~G~~~~i~~A~~~I~~~i 232 (290)
..+.+|.||.+.+|.|||++|.+|++|++.||++|+|.+.. .+..++.|+|.|+++++..|..+|.++|
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999996542 3456899999999999999999998864
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.91 E-value=6.6e-10 Score=93.12 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=66.7
Q ss_pred CCceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCC---CCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 163 ASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHE---ADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 163 ~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~---~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
...+.+|.||.+.+|.|||++|++|+.|++.||++|+|.+.. ++..+|.+.|+|+.+++..|..+|.+.+.+...
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 357899999999999999999999999999999999996542 456789999999999999999999999876543
No 35
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.84 E-value=1.9e-09 Score=81.74 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.9
Q ss_pred CCcccccccccccccccCCCCCcccccc
Q 022880 92 PTVVKSRMCNRLNSAEGCKFGDKCHFAH 119 (290)
Q Consensus 92 ~~~~ktr~C~~~~~~g~C~~G~~C~f~H 119 (290)
...+|+.+|.+| ..|.|.+|++|+|+|
T Consensus 8 ~~~~k~~lC~~f-~~G~C~~G~~C~f~H 34 (98)
T 2cqe_A 8 ELPKKRELCKFY-ITGFCARAENCPYMH 34 (98)
T ss_dssp CCSCCCSBCTTT-TTTCCSCSTTCSSBS
T ss_pred CCCCCCccCccc-ccCcCCCCCCCCCCC
Confidence 455799999988 579999999999999
No 36
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=88.77 Aligned_cols=69 Identities=28% Similarity=0.387 Sum_probs=63.3
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhc
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRI 235 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~ 235 (290)
.+.+|.||.+.+|.|||++|++|++|++.||++|+|.+. +..+|.+.|+|+.+++..|..+|.+.+.+.
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999764 356899999999999999999999998775
No 37
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.6e-09 Score=77.41 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=24.3
Q ss_pred CCcccccccccccccccCCCCCccccccc
Q 022880 92 PTVVKSRMCNRLNSAEGCKFGDKCHFAHG 120 (290)
Q Consensus 92 ~~~~ktr~C~~~~~~g~C~~G~~C~f~H~ 120 (290)
...+|+.+|.+|.+ |.|.+|+.|.|+|.
T Consensus 5 ~~~~k~~~C~~fl~-G~C~~G~~C~fsH~ 32 (77)
T 2d9n_A 5 SSGEKTVVCKHWLR-GLCKKGDQCEFLHE 32 (77)
T ss_dssp CSCCTTSBCHHHHT-TCCSCTTSSSSBCS
T ss_pred CCCCcceeCHhHcc-CcCCCCCCCCCccc
Confidence 35678899998877 89999999999994
No 38
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.75 E-value=4.2e-09 Score=85.43 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=59.0
Q ss_pred eEEEEecccccceeeCCCCCchhhHHHhhCC-ceeeccC-CCC--CCc--ceeEEcCCHHHHHHHHHHHHHHHHhc
Q 022880 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGA-KLSIRDH-EAD--PNL--RNIELEGSFEQIKQASAMVRELIVRI 235 (290)
Q Consensus 166 t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga-~i~v~~~-~~~--~~~--r~v~i~G~~~~i~~A~~~I~~~i~~~ 235 (290)
...+.||.+.+|.+|||+|.+|+.+++.||+ +|+|.+. +.. ..+ +.|+|+|++++++.|..+|.+.+.+.
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999997 8999543 221 122 45899999999999999999998753
No 39
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.2e-09 Score=74.96 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=31.6
Q ss_pred CCCcccccccccccccccCCCCCcccccccccccCCC
Q 022880 91 GPTVVKSRMCNRLNSAEGCKFGDKCHFAHGEWELGKP 127 (290)
Q Consensus 91 ~~~~~ktr~C~~~~~~g~C~~G~~C~f~H~~~el~~~ 127 (290)
.+|..+++||..| ..|.|+||++|+|||+++||+..
T Consensus 14 R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 14 RFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHH
T ss_pred cCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhH
Confidence 4556688999999 77899999999999999999974
No 40
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.68 E-value=2e-08 Score=75.68 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=65.7
Q ss_pred CCCceEEEEecccccceeeCCCCCchhhHHHhh-CCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 162 GASATAKISVDASLAGAIIGKGGVNSKQICRQT-GAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 162 ~~~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~s-ga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
....+..|.||.++.+.|||++|.+|+.|.+++ |++|.+.+.. ...+.|+|.|..++++.|..+|..++.+.+.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG--SGSDTVVIRGPSSDVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT--TTCCEEEEESCHHHHHHHHHHHHHHHHHHSC
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC--CCcceEEEEcCHHHHHHHHHHHHHHHhhhhh
Confidence 346789999999999999999999999999999 9999996533 3466899999999999999999999988765
No 41
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.65 E-value=5.3e-09 Score=74.35 Aligned_cols=64 Identities=20% Similarity=0.409 Sum_probs=47.6
Q ss_pred cccccccccccCCCCCCCC-CceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCC
Q 022880 32 SKSKPCTKFFSTAGCPFGE-SCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCK 110 (290)
Q Consensus 32 ~Kt~lC~~~~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~C~ 110 (290)
.|..+|++|. .|.|..|+ .|.|+|+....+ ......++.+|..|.+ |.|.
T Consensus 4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~---------------------------~~~~~~~~~vC~~flk-G~C~ 54 (70)
T 3d2q_A 4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTM---------------------------IDTNDNTVTVCMDYIK-GRCS 54 (70)
T ss_dssp CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSC---------------------------CBTTTTEEEBCHHHHT-TCCC
T ss_pred ccchhCHHHh-cCCCCCCCCCCCCccCccccc---------------------------ccccCCcceeccccCc-CCCC
Confidence 3678999996 57999999 599999751100 0123456778987766 8999
Q ss_pred CCCcccccccccccC
Q 022880 111 FGDKCHFAHGEWELG 125 (290)
Q Consensus 111 ~G~~C~f~H~~~el~ 125 (290)
.+ .|+|+|...+|+
T Consensus 55 r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 55 RE-KCKYFHPPAHLQ 68 (70)
T ss_dssp CT-TCCSBCCCHHHH
T ss_pred CC-CcCeeCCHHHHh
Confidence 99 999999877664
No 42
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.58 E-value=8.6e-09 Score=73.59 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.3
Q ss_pred CcccccccccccccccCCCCCccccccc
Q 022880 93 TVVKSRMCNRLNSAEGCKFGDKCHFAHG 120 (290)
Q Consensus 93 ~~~ktr~C~~~~~~g~C~~G~~C~f~H~ 120 (290)
...++.+|.+|.+ |.|.+|+.|.|+|.
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHE 38 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCS
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCccc
Confidence 4567889998877 89999999999993
No 43
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.54 E-value=1e-07 Score=72.61 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=60.4
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHh-hCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcCC
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQ-TGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~-sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~~ 237 (290)
.+..|.||..+.+.|||++|++|+.|++. +++.|.+.+ .++.|+|.|..+.|..|...|...+.+...
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999996 688898875 346899999999999999999998876543
No 44
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.1e-09 Score=79.25 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=48.1
Q ss_pred cccccccccccCCCCCCCC-CceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCC
Q 022880 32 SKSKPCTKFFSTAGCPFGE-SCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEGCK 110 (290)
Q Consensus 32 ~Kt~lC~~~~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~C~ 110 (290)
.|..+|++|++ |.|..|+ .|+|+|...... ......+..+|..|.+ |.|.
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~---------------------------~~~~~~~~~vC~~flk-G~C~ 68 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTM---------------------------IDTSDNTVTVCMDYIK-GRCM 68 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCS---------------------------CCTTTCEEEBCHHHHH-TCCC
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcc---------------------------ccccCCccccchhhcc-CCCC
Confidence 47789999997 7999999 799999751100 0123456678976655 8999
Q ss_pred CCCcccccccccccCC
Q 022880 111 FGDKCHFAHGEWELGK 126 (290)
Q Consensus 111 ~G~~C~f~H~~~el~~ 126 (290)
++ .|+|.|...+|+.
T Consensus 69 r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 69 RE-KCKYFHPPAHLQA 83 (98)
T ss_dssp CT-TCCSBCCCHHHHH
T ss_pred CC-CcCccCChHHHHH
Confidence 99 9999998766644
No 45
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.51 E-value=2.8e-08 Score=70.57 Aligned_cols=30 Identities=27% Similarity=0.691 Sum_probs=27.1
Q ss_pred cccccCCCCCCCCCCCCCCCcCCCChhhhcc
Q 022880 257 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 287 (290)
Q Consensus 257 ~k~~~C~~~~~g~C~~g~~C~f~Hg~~el~~ 287 (290)
.++.+|.+|..|.|..| +|+|.|...+|+.
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCHHHHC
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHHHHhc
Confidence 35668999999999999 9999999999985
No 46
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=7.2e-08 Score=71.64 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=58.8
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCc-eeeccCCCCCCcceeEEcC-CHHHHHHHHHHHHHHHHhcCC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAK-LSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~-i~v~~~~~~~~~r~v~i~G-~~~~i~~A~~~I~~~i~~~~~ 237 (290)
.....|.||.+.++.|||++|.+|+.|++.||++ |.|.+ ....|.|.| +.++++.|..+|...-.....
T Consensus 14 ~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~ie~~~~v 84 (91)
T 2cpq_A 14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFVEDFIQV 84 (91)
T ss_dssp SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCCCCCCCC
T ss_pred ceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhhheEEec
Confidence 5778899999999999999999999999999998 99964 236789999 899999999988665444443
No 47
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.7e-07 Score=70.78 Aligned_cols=30 Identities=27% Similarity=0.668 Sum_probs=26.3
Q ss_pred cccccCCCCCCCCCCCCCCCcCCCChhhhcc
Q 022880 257 FKTKLCGNFAKGSCTFGDRCHFAHGAAELRK 287 (290)
Q Consensus 257 ~k~~~C~~~~~g~C~~g~~C~f~Hg~~el~~ 287 (290)
.++.+|.+|..|.|.++ +|+|.|...+|+.
T Consensus 54 ~~~~vC~~flkG~C~r~-~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 54 NTVTVCMDYIKGRCMRE-KCKYFHPPAHLQA 83 (98)
T ss_dssp CEEEBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred CccccchhhccCCCCCC-CcCccCChHHHHH
Confidence 35567999999999999 9999999998864
No 48
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=68.55 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=55.6
Q ss_pred CceEEEEeccc-------ccceeeCCCCCchhhHHHhhCCceeeccCCC-----------CCCcceeEEcCCHHHHHHHH
Q 022880 164 SATAKISVDAS-------LAGAIIGKGGVNSKQICRQTGAKLSIRDHEA-----------DPNLRNIELEGSFEQIKQAS 225 (290)
Q Consensus 164 ~~t~~i~VP~~-------~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~-----------~~~~r~v~i~G~~~~i~~A~ 225 (290)
..+.+|.||.+ +++.|||++|.+|+.|+++||++|.|..... +....+.....+.++++.|.
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 35677888775 6778999999999999999999999963321 11224444456899999999
Q ss_pred HHHHHHHHhc
Q 022880 226 AMVRELIVRI 235 (290)
Q Consensus 226 ~~I~~~i~~~ 235 (290)
.+|.+++...
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999998754
No 49
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.27 E-value=2.6e-07 Score=67.62 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=45.7
Q ss_pred CccccccccccccCCCCCCCC-CceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 022880 30 VGSKSKPCTKFFSTAGCPFGE-SCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEG 108 (290)
Q Consensus 30 ~~~Kt~lC~~~~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~ 108 (290)
.+.|...|++|.+ |.|..|| .|+|+|.... + .-..-+..+|..|. .|.
T Consensus 5 ~~~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~-~----------------------------~~~~~~~~vC~dfl-kG~ 53 (83)
T 3d2n_A 5 KWLTLEVCREFQR-GTCSRPDTECKFAHPSKS-C----------------------------QVENGRVIACFDSL-KGR 53 (83)
T ss_dssp GGGEEEBCTTGGG-TCCCSCTTTCSSBCCCTT-C----------------------------CEETTEEECCHHHH-TTC
T ss_pred ccccchhcHHHhc-CCCCCCCCCCCCcCCCcc-c----------------------------cccCCceeehhHhh-hcc
Confidence 3567789999997 7999997 9999997511 0 00122345787774 579
Q ss_pred CCCCCcccccccccccC
Q 022880 109 CKFGDKCHFAHGEWELG 125 (290)
Q Consensus 109 C~~G~~C~f~H~~~el~ 125 (290)
|..+ .|+|.|....|.
T Consensus 54 C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 54 CSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp CCCS-SCSSCCCCHHHH
T ss_pred ccCC-CcceeCChHHHH
Confidence 9988 999999765443
No 50
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.25 E-value=1.3e-06 Score=69.38 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=58.4
Q ss_pred CCCceEEEEeccc------ccceeeCCCCCchhhHHHhhCCceeeccCCC----------------CCCcceeEEcC-CH
Q 022880 162 GASATAKISVDAS------LAGAIIGKGGVNSKQICRQTGAKLSIRDHEA----------------DPNLRNIELEG-SF 218 (290)
Q Consensus 162 ~~~~t~~i~VP~~------~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~----------------~~~~r~v~i~G-~~ 218 (290)
....+.+|.||.+ ++|.|||.+|.+|+.|+++||++|.|..... ....--|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3467889999998 8899999999999999999999999965211 01123455555 79
Q ss_pred HHHHHHHHHHHHHHHhc
Q 022880 219 EQIKQASAMVRELIVRI 235 (290)
Q Consensus 219 ~~i~~A~~~I~~~i~~~ 235 (290)
+.++.|..+|..++...
T Consensus 84 e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998763
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.18 E-value=1.7e-06 Score=80.16 Aligned_cols=69 Identities=17% Similarity=0.359 Sum_probs=60.9
Q ss_pred CCceEEEEecccccceeeCCCC--CchhhHHHhhCCceeeccCC-----CCCCcceeEEcCCHHHHHHHHHHHHHH
Q 022880 163 ASATAKISVDASLAGAIIGKGG--VNSKQICRQTGAKLSIRDHE-----ADPNLRNIELEGSFEQIKQASAMVREL 231 (290)
Q Consensus 163 ~~~t~~i~VP~~~vg~iIGkgG--~~Ik~i~~~sga~i~v~~~~-----~~~~~r~v~i~G~~~~i~~A~~~I~~~ 231 (290)
...|..+.||......||||+| ++|++|+++||++|++.+.+ .......|+|+|.++.|+.|...|.+.
T Consensus 28 ~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 28 TRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 3788999999999999999999 99999999999999997654 123457899999999999999999874
No 52
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.86 E-value=3.9e-06 Score=62.05 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=44.0
Q ss_pred ccccccccccccCCCCCCCC-CceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccC
Q 022880 31 GSKSKPCTKFFSTAGCPFGE-SCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAEGC 109 (290)
Q Consensus 31 ~~Kt~lC~~~~~~g~C~~G~-~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g~C 109 (290)
+.+...|+.|.+ |.|..|+ .|+|+|.... . .-..-+..+|..| ..|.|
T Consensus 14 ~~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~-~----------------------------~v~~~~~~vC~df-lkG~C 62 (89)
T 2rpp_A 14 WLTLEVCRQFQR-GTCSRSDEECKFAHPPKS-C----------------------------QVENGRVIACFDS-LKGRC 62 (89)
T ss_dssp SSEECBCHHHHH-TCCCCCTTTSSSBCCCSS-S----------------------------CCBTTBEEBCHHH-HHTCC
T ss_pred cchhhhchHHhc-CCCCCCCCCCCCcCCCcc-c----------------------------cccCCceeeehhh-hhCcC
Confidence 446779999997 7999998 9999997411 0 0011234578766 56899
Q ss_pred CCCCccccccccccc
Q 022880 110 KFGDKCHFAHGEWEL 124 (290)
Q Consensus 110 ~~G~~C~f~H~~~el 124 (290)
..+ .|+|.|....|
T Consensus 63 ~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 63 SRE-NCKYLHPPTHL 76 (89)
T ss_dssp CCT-TCCSBCCCHHH
T ss_pred CCC-CcceecCHHHH
Confidence 977 99999976444
No 53
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.81 E-value=3.8e-06 Score=72.52 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=54.8
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcC-----CHHHHHHHHHHHHHHHH
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-----SFEQIKQASAMVRELIV 233 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G-----~~~~i~~A~~~I~~~i~ 233 (290)
....+.||.+.++.|||++|.+|+.|++.+|++|+|... .+.|.|.+ +++++++|..+|..++.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999632 34556655 47999999999999873
No 54
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.78 E-value=8.7e-06 Score=59.45 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=23.7
Q ss_pred ccCCCCCCCCCCCCCCCcCCCChhhhcc
Q 022880 260 KLCGNFAKGSCTFGDRCHFAHGAAELRK 287 (290)
Q Consensus 260 ~~C~~~~~g~C~~g~~C~f~Hg~~el~~ 287 (290)
..|.+|..|.|..+ .|+|.|...+|..
T Consensus 44 ~vC~dflkG~C~r~-~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 44 IACFDSLKGRCSRE-NCKYLHPPPHLKT 70 (83)
T ss_dssp ECCHHHHTTCCCCS-SCSSCCCCHHHHH
T ss_pred eehhHhhhccccCC-CcceeCChHHHHH
Confidence 36999999999998 9999999887753
No 55
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.76 E-value=4.6e-05 Score=60.08 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=61.7
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHH
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIV 233 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~ 233 (290)
.....+.|.+..+++|||++|+.|+.|...|.+.|+|..-+++ +.-.|+|.|++.....+..+|..+..
T Consensus 55 ~dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~-g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 55 EDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE-RRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp SSCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT-SCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCC-CcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 5668999999999999999999999999999999999776553 67889999999999999999987653
No 56
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.75 E-value=2.3e-05 Score=72.58 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=57.9
Q ss_pred CceEEEEecccccceeeCCCCCc--hhhHHHhhCCceeeccCCC--C--CCcceeEEcCCHHHHHHHHHHHHHHHH
Q 022880 164 SATAKISVDASLAGAIIGKGGVN--SKQICRQTGAKLSIRDHEA--D--PNLRNIELEGSFEQIKQASAMVRELIV 233 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~--Ik~i~~~sga~i~v~~~~~--~--~~~r~v~i~G~~~~i~~A~~~I~~~i~ 233 (290)
..+..|.|+......|||++|.+ |+.|+++||++|.+.+.+. + .....|+|+|+.++|..|...|.+.|.
T Consensus 185 ~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 185 NFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp CEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred ceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 57889999999999999999965 4999999999999965422 1 235789999999999999999999863
No 57
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.72 E-value=1.2e-05 Score=69.45 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=50.0
Q ss_pred ccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHhcC
Q 022880 175 LAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVRIG 236 (290)
Q Consensus 175 ~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~~~ 236 (290)
.+|.|||++|.+|+.|++.||+.|.|.+ +.++|.|++++++.|..+|.+++....
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~-------~~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG-------KTVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET-------TEEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC-------eEEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 6888999999999999999999999964 569999999999999999999995543
No 58
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.67 E-value=2.6e-05 Score=62.47 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=52.4
Q ss_pred ceEEEEecccc------cceeeCCCCCchhhHHHhhCCceeeccCCCCC-----------------C-cceeEEcC-CHH
Q 022880 165 ATAKISVDASL------AGAIIGKGGVNSKQICRQTGAKLSIRDHEADP-----------------N-LRNIELEG-SFE 219 (290)
Q Consensus 165 ~t~~i~VP~~~------vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~-----------------~-~r~v~i~G-~~~ 219 (290)
.+.+|.||... +|.|||.+|.++|.|++.||++|.|......- . .--|.|++ +++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 35678888655 88999999999999999999999997533110 0 11445665 443
Q ss_pred -----HHHHHHHHHHHHHHhc
Q 022880 220 -----QIKQASAMVRELIVRI 235 (290)
Q Consensus 220 -----~i~~A~~~I~~~i~~~ 235 (290)
.++.|..+|..++...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 7899999999988643
No 59
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.66 E-value=3.2e-05 Score=65.25 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=57.7
Q ss_pred eEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEc-----CCHHHHHHHHHHHHHHHHhcC
Q 022880 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELE-----GSFEQIKQASAMVRELIVRIG 236 (290)
Q Consensus 166 t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~-----G~~~~i~~A~~~I~~~i~~~~ 236 (290)
...+.||...+|+|||++|+.++.|++.++++|++.. .++.++|. |++.++.+|..+|..+....+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999964 35566666 999999999999988776544
No 60
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.44 E-value=5.4e-05 Score=61.05 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=45.9
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHH
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAM 227 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~ 227 (290)
..+.++.||.+.+|++||++|++|+.|++.+| |.+-....+ ..+.+...++++.+..|..+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~-~~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED-TCTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT-TTEEEEEESSHHHHHHHHHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC-chheeeccCCHHHHHHHHHh
Confidence 45789999999999999999999999999999 655322222 23445555679999888654
No 61
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.32 E-value=0.00012 Score=54.09 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=23.5
Q ss_pred ccCCCCCCCCCCCCCCCcCCCChhhhcc
Q 022880 260 KLCGNFAKGSCTFGDRCHFAHGAAELRK 287 (290)
Q Consensus 260 ~~C~~~~~g~C~~g~~C~f~Hg~~el~~ 287 (290)
..|.+|..|.|..+ .|+|.|....|..
T Consensus 52 ~vC~dflkG~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 52 IACFDSLKGRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp EBCHHHHHTCCCCT-TCCSBCCCHHHHH
T ss_pred eeehhhhhCcCCCC-CcceecCHHHHHH
Confidence 35999999999998 9999999887753
No 62
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.27 E-value=0.00012 Score=62.51 Aligned_cols=21 Identities=29% Similarity=0.945 Sum_probs=19.3
Q ss_pred cCCCCCCCCCCCCCCCcCCCCh
Q 022880 261 LCGNFAKGSCTFGDRCHFAHGA 282 (290)
Q Consensus 261 ~C~~~~~g~C~~g~~C~f~Hg~ 282 (290)
+|.+|..|+|+| ..|+-.|..
T Consensus 177 IC~~Fl~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 177 ICEHFTRGNCSY-LNCLRSHNL 197 (229)
T ss_dssp SCHHHHTTCCCC-SSCSSCCCT
T ss_pred ccchhhcCCcCC-CCccCccCc
Confidence 499999999999 899999986
No 63
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.23 E-value=7.8e-05 Score=62.83 Aligned_cols=54 Identities=22% Similarity=0.421 Sum_probs=48.9
Q ss_pred cccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcCCHHHHHHHHHHHHHHHHh
Q 022880 174 SLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEGSFEQIKQASAMVRELIVR 234 (290)
Q Consensus 174 ~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G~~~~i~~A~~~I~~~i~~ 234 (290)
..+|-|||++|.+|+.|++.||+.|.|.+ +.+.|.|++++++.|...|..++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE-------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS-------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC-------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999975 3799999999999999999999853
No 64
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.11 E-value=0.00011 Score=72.68 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=51.8
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcC-CHHHHHHHHHHHHHHH
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELI 232 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G-~~~~i~~A~~~I~~~i 232 (290)
....+.||.+.++.|||+||.+|+.|++.||+.|.|.+ +..|.|.+ +.+.++.|..+|..++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999974 24667766 5788999999887654
No 65
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.54 E-value=0.001 Score=42.90 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=26.2
Q ss_pred ccccccccccccCCCCCCCCCceEeccc
Q 022880 31 GSKSKPCTKFFSTAGCPFGESCHFLHYF 58 (290)
Q Consensus 31 ~~Kt~lC~~~~~~g~C~~G~~C~F~H~~ 58 (290)
..++.+|..|...|-|++|.+|.|.|++
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccC
Confidence 4689999999999999999999999986
No 66
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.51 E-value=0.0006 Score=68.21 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=10.9
Q ss_pred eEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcC-CHHHHHHHHHHHHHHHHhcCCC
Q 022880 166 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELIVRIGPA 238 (290)
Q Consensus 166 t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G-~~~~i~~A~~~I~~~i~~~~~~ 238 (290)
...+.||.+.++.|||+||.+|+.|.+.||++|.|.+. ..|.|.+ +.+.++.|..+|..++.+...+
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd------G~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD------GVVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC-----------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC------ceEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 46789999999999999999999999999999999642 2344444 6889999999999888766554
No 67
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.94 E-value=0.007 Score=38.96 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=25.2
Q ss_pred cccccccccccccccCCCCCcccccccc
Q 022880 94 VVKSRMCNRLNSAEGCKFGDKCHFAHGE 121 (290)
Q Consensus 94 ~~ktr~C~~~~~~g~C~~G~~C~f~H~~ 121 (290)
..++.+|..|-..|+|++|.+|.+.|..
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccC
Confidence 3578899999999999999999999954
No 68
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=94.79 E-value=0.012 Score=50.31 Aligned_cols=45 Identities=20% Similarity=0.569 Sum_probs=37.3
Q ss_pred cccccccccccC----CCCCCCCCceEecccCCCchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 022880 32 SKSKPCTKFFST----AGCPFGESCHFLHYFPGGYNAVAQMMNLPQAVPAPSRNMAVPPPASNGPTVVKSRMCNRLNSAE 107 (290)
Q Consensus 32 ~Kt~lC~~~~~~----g~C~~G~~C~F~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~~~ktr~C~~~~~~g 107 (290)
.=-.+|.+| ++ |.|.++++|...| +|.+|. .|
T Consensus 149 lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH------------------------------------------IC~~Fl-~G 184 (229)
T 3u9g_A 149 FLPEICKSY-KGEGRKQTCGQPQPCERLH------------------------------------------ICEHFT-RG 184 (229)
T ss_dssp GSCCBCTTC-CCSSSCCSCSSSSCCCSBC------------------------------------------SCHHHH-TT
T ss_pred cCchHHHHh-CCCCCCCcCCCCCCCccee------------------------------------------ccchhh-cC
Confidence 345799999 75 6899999999999 697775 56
Q ss_pred cCCCCCcccccccc
Q 022880 108 GCKFGDKCHFAHGE 121 (290)
Q Consensus 108 ~C~~G~~C~f~H~~ 121 (290)
.|+| ..|+-.|.-
T Consensus 185 ~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 185 NCSY-LNCLRSHNL 197 (229)
T ss_dssp CCCC-SSCSSCCCT
T ss_pred CcCC-CCccCccCc
Confidence 8999 899999953
No 69
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.68 E-value=0.0087 Score=52.09 Aligned_cols=22 Identities=41% Similarity=0.946 Sum_probs=20.8
Q ss_pred ccCCCCCCCCCCCCCCCcCCCC
Q 022880 260 KLCGNFAKGSCTFGDRCHFAHG 281 (290)
Q Consensus 260 ~~C~~~~~g~C~~g~~C~f~Hg 281 (290)
.+|.||..|.|..|+.|.|.|.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBS
T ss_pred eEcCccccCCCCCCCCCCccCC
Confidence 4799999999999999999996
No 70
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=92.15 E-value=0.026 Score=49.03 Aligned_cols=26 Identities=31% Similarity=0.636 Sum_probs=22.6
Q ss_pred cccccccccCCCCCCCCCceEecccCC
Q 022880 34 SKPCTKFFSTAGCPFGESCHFLHYFPG 60 (290)
Q Consensus 34 t~lC~~~~~~g~C~~G~~C~F~H~~~~ 60 (290)
...|.||.+ |.|++|+.|.|.|.+|.
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 359999987 79999999999998854
No 71
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.39 E-value=0.036 Score=55.54 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=0.0
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcC-CHHHHHHHHHHHHHHHHhcCC
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELIVRIGP 237 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G-~~~~i~~A~~~I~~~i~~~~~ 237 (290)
....+.||.+.++.|||+||.+|+.|.+.+|+.|.|.+ ...+.|.+ +.+.++.|..+|..++.+...
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~~~~v 627 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITAEIEV 627 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhhhhhc
Confidence 34668899999999999999999999999999998864 22344444 556677777777766654443
No 72
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.53 E-value=0.025 Score=56.96 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=19.0
Q ss_pred EEEEecccccceeeCCCCCchhhHHHhhCCceeeccCCCCCCcceeEEcC-CHHHHHHHHHHHHHHH
Q 022880 167 AKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEADPNLRNIELEG-SFEQIKQASAMVRELI 232 (290)
Q Consensus 167 ~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~~~~~~~~r~v~i~G-~~~~i~~A~~~I~~~i 232 (290)
..+.||.+.++.+||++|.+|+.|.+.+|+.|.|.+ +..+.|+. +.+.++.|..+|..+.
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999874 23444544 5666666766666654
No 73
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=82.86 E-value=0.47 Score=40.50 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCCCCCCCCCcCCCChhhh
Q 022880 255 SNFKTKLCGNFAKGSCTFGDRCHFAHGAAEL 285 (290)
Q Consensus 255 ~~~k~~~C~~~~~g~C~~g~~C~f~Hg~~el 285 (290)
..-+.++|+|-. .|-||.+|+|.|.|+--
T Consensus 188 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 188 LEHRKQPCPYGR--KCTYGIKCRFFHPERPS 216 (223)
T ss_dssp -------------------------------
T ss_pred cccCCCCCCCCc--ccccCCcceecCCccCC
Confidence 334678899954 79999999999998643
No 74
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=82.75 E-value=0.45 Score=40.64 Aligned_cols=24 Identities=29% Similarity=0.822 Sum_probs=0.0
Q ss_pred cccccccccccCCCCCCCCCceEeccc
Q 022880 32 SKSKPCTKFFSTAGCPFGESCHFLHYF 58 (290)
Q Consensus 32 ~Kt~lC~~~~~~g~C~~G~~C~F~H~~ 58 (290)
.+..+|+| +..|.||.+|+|.|..
T Consensus 190 ~~~~~~~~---~~~~~~~~~~~~~~~~ 213 (223)
T 3v33_A 190 HRKQPCPY---GRKCTYGIKCRFFHPE 213 (223)
T ss_dssp ---------------------------
T ss_pred cCCCCCCC---CcccccCCcceecCCc
Confidence 36789985 3489999999999975
No 75
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=82.39 E-value=0.29 Score=34.94 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=15.9
Q ss_pred cccccccccCCCCCCCCCceEeccc
Q 022880 34 SKPCTKFFSTAGCPFGESCHFLHYF 58 (290)
Q Consensus 34 t~lC~~~~~~g~C~~G~~C~F~H~~ 58 (290)
..+|+|+. .|.. ..|.|.|..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHAR 29 (80)
Confidence 36787665 6888 899999953
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=78.46 E-value=0.66 Score=36.89 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=34.3
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHhhCCceeec
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIR 201 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~ 201 (290)
..+.+.|+...+|+.||++|++|+.|++..|-+|.|-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 5688999999999999999999999999999999884
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=67.28 E-value=1.7 Score=37.78 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=36.1
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeecc
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 202 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~ 202 (290)
...+.+.||.+..++.|||+|.||+-....||-.|.|.+
T Consensus 183 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 183 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 467899999999999999999999999999999999954
No 78
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=66.05 E-value=0.63 Score=37.03 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=34.2
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeec
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIR 201 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~ 201 (290)
.....+.||.+..+..|||+|.|++-....+|..|.|.
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 46788999999999999999999999999999888764
No 79
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=60.16 E-value=2.9 Score=38.03 Aligned_cols=39 Identities=31% Similarity=0.493 Sum_probs=36.1
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeecc
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 202 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~ 202 (290)
...+.+.||.+..++.|||+|.|++-....||-+|.|..
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 568899999999999999999999999999999999853
No 80
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=59.12 E-value=6 Score=28.52 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=0.0
Q ss_pred ccCCCCCcccc
Q 022880 107 EGCKFGDKCHF 117 (290)
Q Consensus 107 g~C~~G~~C~f 117 (290)
-.|+||..|--
T Consensus 57 p~C~YG~~CYR 67 (89)
T 2kqb_A 57 PECPYGPSCYR 67 (89)
T ss_dssp -----------
T ss_pred CCCCCchhhhc
Confidence 46999999953
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=57.05 E-value=3.3 Score=37.88 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=36.2
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhCCceeecc
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRD 202 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sga~i~v~~ 202 (290)
...+.+.||....++.|||+|.|++-....||-.|.|..
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 567889999999999999999999999999999999953
No 82
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=55.14 E-value=3.5 Score=29.27 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=4.5
Q ss_pred CCcCCCCh
Q 022880 275 RCHFAHGA 282 (290)
Q Consensus 275 ~C~f~Hg~ 282 (290)
+|.|+|..
T Consensus 44 ~C~f~HP~ 51 (80)
T 2lhn_A 44 DCLFGHPI 51 (80)
Confidence 45566653
No 83
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=48.98 E-value=6.6 Score=28.42 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=8.6
Q ss_pred cccCCCCCccc
Q 022880 106 AEGCKFGDKCH 116 (290)
Q Consensus 106 ~g~C~~G~~C~ 116 (290)
.-.|+||..|-
T Consensus 61 ~p~C~YG~~CY 71 (91)
T 2kuo_A 61 RPECPYGPSCY 71 (91)
T ss_dssp SCBCTTGGGCC
T ss_pred CCCCCCchhhh
Confidence 34699999995
No 84
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=47.64 E-value=3.8 Score=29.81 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=24.9
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHh
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQ 193 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~ 193 (290)
..++|.|-....|+|||++|..|..++..
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 45788899999999999999999888763
No 85
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=30.28 E-value=13 Score=29.57 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=27.1
Q ss_pred CceEEEEecccccceeeCCCCCchhhHHHhhC
Q 022880 164 SATAKISVDASLAGAIIGKGGVNSKQICRQTG 195 (290)
Q Consensus 164 ~~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~sg 195 (290)
..+..+.+-.+-.|++|||.|.++..+|-.+.
T Consensus 32 ~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 32 PGVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CCEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 34577888899999999999999999987663
No 86
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=29.29 E-value=32 Score=18.56 Aligned_cols=15 Identities=33% Similarity=1.088 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCc
Q 022880 262 CGNFAKGSCTFGDRCH 277 (290)
Q Consensus 262 C~~~~~g~C~~g~~C~ 277 (290)
|+-| .|.|++|.+|.
T Consensus 4 CPC~-~~gCpWGQ~~~ 18 (27)
T 1ans_A 4 CPCY-WGGCPWGQNCY 18 (27)
T ss_dssp CCST-TTTCSSSCSSC
T ss_pred cccc-ccCCccccccc
Confidence 5555 59999998874
No 87
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=27.80 E-value=21 Score=30.57 Aligned_cols=29 Identities=10% Similarity=0.298 Sum_probs=24.7
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHh
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQ 193 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~ 193 (290)
..++|.|-....|+|||++|..|+.++..
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34788888899999999999999988764
No 88
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=26.91 E-value=10 Score=32.79 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=25.4
Q ss_pred cccceeeCCCCCchhhH-HHhhCCceeec
Q 022880 174 SLAGAIIGKGGVNSKQI-CRQTGAKLSIR 201 (290)
Q Consensus 174 ~~vg~iIGkgG~~Ik~i-~~~sga~i~v~ 201 (290)
+.+|+.||++|++|+.| ++..|-+|.|-
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi 154 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDII 154 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEE
Confidence 67899999999999999 88999999883
No 89
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.74 E-value=20 Score=30.04 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=23.2
Q ss_pred eEEEEecccccceeeCCCCCchhhHHH
Q 022880 166 TAKISVDASLAGAIIGKGGVNSKQICR 192 (290)
Q Consensus 166 t~~i~VP~~~vg~iIGkgG~~Ik~i~~ 192 (290)
.+++.|-....|.|||++|..|+.++.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 467888888899999999999988765
No 90
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.35 E-value=24 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=24.5
Q ss_pred ceEEEEecccccceeeCCCCCchhhHHHh
Q 022880 165 ATAKISVDASLAGAIIGKGGVNSKQICRQ 193 (290)
Q Consensus 165 ~t~~i~VP~~~vg~iIGkgG~~Ik~i~~~ 193 (290)
..+++.|-....|.|||++|..|+.++..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45678888889999999999999987763
Done!