BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022881
         (290 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
           At 2.4 Angstroms
 pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
           At 2.4 Angstroms
          Length = 193

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 132 NKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCVLGKDLLSIEKFGLV--QYMILKTVC 189
           +KLR ++ + LLE TD    E Q  Y   F R C  G   LS+E+F  +   +       
Sbjct: 6   SKLRPEVMQDLLESTDFTEHEIQEWYKG-FLRDCPSGH--LSMEEFKKIYGNFFPYGDAS 62

Query: 190 AFLAFLLELFGVYGDG 205
            F   +   F   GDG
Sbjct: 63  KFAEHVFRTFDANGDG 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,563,087
Number of Sequences: 62578
Number of extensions: 340501
Number of successful extensions: 681
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 1
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)