Query 022881
Match_columns 290
No_of_seqs 129 out of 510
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03619 Solute_trans_a: Organ 100.0 7.8E-71 1.7E-75 508.0 23.6 238 32-285 1-241 (274)
2 KOG2641 Predicted seven transm 100.0 2.9E-65 6.3E-70 483.6 24.8 244 29-290 30-279 (386)
3 KOG3979 FGF receptor activatin 88.2 3 6.5E-05 39.2 8.6 97 21-119 162-259 (296)
4 COG3833 MalG ABC-type maltose 79.4 30 0.00065 32.3 11.0 79 36-128 79-159 (282)
5 PF14126 DUF4293: Domain of un 77.5 29 0.00064 29.2 9.7 51 38-92 55-107 (149)
6 PF10277 Frag1: Frag1/DRAM/Sfk 75.6 30 0.00064 29.8 9.7 98 21-118 109-207 (215)
7 COG5524 Bacteriorhodopsin [Gen 41.5 20 0.00044 33.5 2.4 69 12-89 11-79 (285)
8 PF13850 ERGIC_N: Endoplasmic 41.1 20 0.00043 27.8 2.0 34 36-69 19-52 (96)
9 PF02285 COX8: Cytochrome oxid 37.2 39 0.00085 22.7 2.6 30 36-65 15-44 (44)
10 PF00558 Vpu: Vpu protein; In 34.3 60 0.0013 24.7 3.5 21 54-74 23-43 (81)
11 PF06365 CD34_antigen: CD34/Po 34.2 58 0.0013 29.1 4.0 58 2-69 79-137 (202)
12 cd00930 Cyt_c_Oxidase_VIII Cyt 30.7 99 0.0022 20.7 3.7 28 37-64 16-43 (43)
13 PF07301 DUF1453: Protein of u 29.7 3.5E+02 0.0075 22.9 8.3 67 44-117 8-74 (148)
14 PF11810 DUF3332: Domain of un 25.5 1E+02 0.0022 26.9 3.9 47 44-90 16-66 (176)
15 PF03595 SLAC1: Voltage-depend 25.0 5.5E+02 0.012 23.7 10.8 87 31-117 169-264 (330)
16 PF11660 DUF3262: Protein of u 23.6 2.6E+02 0.0056 20.7 5.4 60 18-77 4-68 (76)
17 PRK11056 hypothetical protein; 22.1 3.7E+02 0.0081 22.0 6.3 38 41-78 38-75 (120)
18 PF14333 DUF4389: Domain of un 21.6 1.1E+02 0.0023 23.0 3.0 39 66-118 2-40 (80)
19 PF07146 DUF1389: Protein of u 20.8 1.3E+02 0.0029 28.6 4.1 33 34-66 4-36 (314)
20 PF07226 DUF1422: Protein of u 20.4 4.3E+02 0.0093 21.5 6.3 31 41-71 38-68 (117)
No 1
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=7.8e-71 Score=508.01 Aligned_cols=238 Identities=42% Similarity=0.751 Sum_probs=226.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHHHHH
Q 022881 32 HQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYS 111 (290)
Q Consensus 32 ~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ly~ 111 (290)
|+++|++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++||+|||+++|+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~ 80 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYS 80 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCChHHHHHHHHHhhhhccCCccchhhccccCcCCcccc---cccccccccChhhhHHHhhhhhhHhHHHHH
Q 022881 112 FGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYI---NFFFRPCVLGKDLLSIEKFGLVQYMILKTV 188 (290)
Q Consensus 112 F~~Lli~ylGGe~~~i~~l~~~~~~~~~~p~~~~~~~~~~~~~~~p~---~~c~~~~~~~~~~l~~~k~~VlQ~~ivkpl 188 (290)
|++|+++|+|||+++++.+++++ +.+|++|| |||+|++++|++++|+||+||+||+++||+
T Consensus 81 F~~Ll~~y~gg~~~~~~~l~~~~----------------~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl 144 (274)
T PF03619_consen 81 FFSLLLNYLGGEEALVEVLSGKP----------------PIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPL 144 (274)
T ss_pred HHHHHHHHhCCHHHHHHHhhcCC----------------CCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887542 22455665 457799999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 022881 189 CAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVGI 268 (290)
Q Consensus 189 ~~ii~iil~~~g~Y~~g~~~~~~~~~yl~ii~~iS~~lAly~L~~fy~~~~~~L~~~~P~~KFl~iKlvvflsfwQ~~ii 268 (290)
+++++++++++|+|+||+++++.+++|+++++|+|+++|+|||.+||+++|++|+|+||++||+|+|+|+|++|||++++
T Consensus 145 ~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii 224 (274)
T PF03619_consen 145 LSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFII 224 (274)
T ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCcc
Q 022881 269 ALLCAIGVLPRKKNYKL 285 (290)
Q Consensus 269 ~iL~~~gvi~~~~~~~~ 285 (290)
++|.+.|++|++++.++
T Consensus 225 ~iL~~~g~i~~~~~~~~ 241 (274)
T PF03619_consen 225 SILASFGVIPCTPPWSS 241 (274)
T ss_pred HHHHHCCCcCCCccccc
Confidence 99999999999876553
No 2
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-65 Score=483.59 Aligned_cols=244 Identities=41% Similarity=0.718 Sum_probs=230.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHH
Q 022881 29 KDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFA 108 (290)
Q Consensus 29 ~~~~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ 108 (290)
+.++.++..+|+.|+++|+.+|+++|++|++||++|++||+|+||++|+||||+.||+|++.|+.++|+|++||||||||
T Consensus 30 ~~~~~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ 109 (386)
T KOG2641|consen 30 TFLLTVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRVAFYLDTVRECYEAFV 109 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHhhhhccCCccchhhccccCcCCcccccccccccc-cChhhhHHHhhhhhhHhHHHH
Q 022881 109 LYSFGSYLVACLGGERRVIELLENKLRKQLDKPLLEETDENRGEEQRSYINFFFRPCV-LGKDLLSIEKFGLVQYMILKT 187 (290)
Q Consensus 109 ly~F~~Lli~ylGGe~~~i~~l~~~~~~~~~~p~~~~~~~~~~~~~~~p~~~c~~~~~-~~~~~l~~~k~~VlQ~~ivkp 187 (290)
+|+|++|+.+|+|||++++..++++..+ .+|++|+|||.||.. +|++++|+||+||+||+++||
T Consensus 110 ly~F~sLl~~ylGGe~~~v~~l~~~~~~---------------~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp 174 (386)
T KOG2641|consen 110 LYVFLSLLFHYLGGEQNIVTELEGRLIR---------------VNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKP 174 (386)
T ss_pred HHHHHHHHHHHcCChHHHHHHHhccCCc---------------ccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887432 357778887666554 899999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCchhHHHHHHHHHHHHHHHHH
Q 022881 188 VCAFLAFLLELFGVYGDGEFKWYYGYPYLAVVLNFSQMWALYCLVKFYNVTHEGLEPIKPLAKFISFKAIVFATWWQGVG 267 (290)
Q Consensus 188 l~~ii~iil~~~g~Y~~g~~~~~~~~~yl~ii~~iS~~lAly~L~~fy~~~~~~L~~~~P~~KFl~iKlvvflsfwQ~~i 267 (290)
+++++++++++.|+|++|++++ +.|+++++|+|+++|+|||.+||+++||+|+||||+.||+|+|+++|+++|||++
T Consensus 175 ~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~v 251 (386)
T KOG2641|consen 175 FLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIV 251 (386)
T ss_pred HHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCC-----CCCcccccCC
Q 022881 268 IALLCAIGVLPRK-----KNYKLDCRTF 290 (290)
Q Consensus 268 i~iL~~~gvi~~~-----~~~~~~~~~~ 290 (290)
+++|.+.|.++.. +.++.++|||
T Consensus 252 i~~l~~~g~~~~~~~~~~~~~~~~iQnf 279 (386)
T KOG2641|consen 252 LAILVKLGKIGPSYFDEVGTVAYGIQNF 279 (386)
T ss_pred HHHHHHhcccCcccchhHHHHHHHhhhh
Confidence 9999999999843 3678999997
No 3
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms]
Probab=88.20 E-value=3 Score=39.16 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=66.8
Q ss_pred ccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHh-hccchHHHHHH
Q 022881 21 SAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSL-WNPRLSLACDI 99 (290)
Q Consensus 21 ~~~~~~~~~~~~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl-~~p~~~~y~~~ 99 (290)
+..++|...++|..++.+=++|...-...|..++.-|-++|.+|+-|+..-|=....-++-.++..+. .+++...||+.
T Consensus 162 s~v~~re~~~lha~~Fg~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~kil~~lv~~~~~~s~~~~~~~~~~~C~~ 241 (296)
T KOG3979|consen 162 SAVSEREIGKLHALGFGVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRWKILTFLVMVFSFPSGAIFYIRHNVYCEP 241 (296)
T ss_pred HhhccccCceeehhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceeehhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45566777889998877777777777889999999999999999888876433333333333333332 24566677776
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022881 100 LRNCYEAFALYSFGSYLVAC 119 (290)
Q Consensus 100 ird~YeA~~ly~F~~Lli~y 119 (290)
- .|+.|+++.+-.-.++.
T Consensus 242 ~--ay~~fAi~ey~sV~~n~ 259 (296)
T KOG3979|consen 242 G--AYTLFAILEYSSVFLNS 259 (296)
T ss_pred h--HHHHHHHHHHHHHHHHH
Confidence 5 68888888777665553
No 4
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=79.42 E-value=30 Score=32.30 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHH--HhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHHHHHHH
Q 022881 36 FVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWI--VAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFG 113 (290)
Q Consensus 36 ~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~I--irIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ly~F~ 113 (290)
.++|++.+++++.++...-+- +.+|+-|-++.-+ .-|+-|+| ++.+.+++.. .++.+. .+=+..
T Consensus 79 liva~~t~~i~v~~~~~~aYa-fSR~rF~GRk~~L~~~LilqMfP--~~~aliAlY~-----l~~~lg------llnt~~ 144 (282)
T COG3833 79 LIVALITAAITVALVTLAAYA-FSRYRFKGRKYLLKFFLILQMFP--GVAALIALYV-----LLKLLG------LLNTLW 144 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHH--HHHHHHHHHH-----HHHHhc------ChhhHH
Confidence 368888888888877766665 6677877655544 33555666 3333333321 011111 222345
Q ss_pred HHHHHhhCChHHHHH
Q 022881 114 SYLVACLGGERRVIE 128 (290)
Q Consensus 114 ~Lli~ylGGe~~~i~ 128 (290)
.|.+.|.||.-.+-.
T Consensus 145 gLil~Y~gG~ip~nt 159 (282)
T COG3833 145 GLILAYLGGAIPMNT 159 (282)
T ss_pred HHHHHHhcCchHHHH
Confidence 678889999765433
No 5
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=77.48 E-value=29 Score=29.22 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHh--hHhhHHHHHHHhHhHhhccc
Q 022881 38 IGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVA--VLFMVPVYASESILSLWNPR 92 (290)
Q Consensus 38 iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~Iir--Il~mvPiyai~S~lsl~~p~ 92 (290)
..++..+++.++|+..|+. |+|...|..+.+ +++++=.|+...+.+.-.+.
T Consensus 55 ~l~il~~l~~~lal~aIFl----yKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~ 107 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIFL----YKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSG 107 (149)
T ss_pred HHHHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455677888899999987 788889999877 56677666666666655444
No 6
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=75.62 E-value=30 Score=29.80 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=57.9
Q ss_pred ccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccchHH-HHHH
Q 022881 21 SAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSL-ACDI 99 (290)
Q Consensus 21 ~~~~~~~~~~~~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~~~-y~~~ 99 (290)
+.|+.+.+.+.|..+..+..++..+...+.....++..+++++.......+|+.+..-.....-......++... ....
T Consensus 109 a~~~~~~~~~~H~~~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 188 (215)
T PF10277_consen 109 AIFQSTEHPTVHYIGAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRSFRLRLILLVISIICFISFIVFFILHNFYGAYS 188 (215)
T ss_pred hhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence 456676778899998888888888888888877777776654444555666666555433322222233333222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022881 100 LRNCYEAFALYSFGSYLVA 118 (290)
Q Consensus 100 ird~YeA~~ly~F~~Lli~ 118 (290)
+....|=.....+..++..
T Consensus 189 ~~ai~Ew~~~~~~~~f~~t 207 (215)
T PF10277_consen 189 IFAIFEWVLVFSNILFFLT 207 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443
No 7
>COG5524 Bacteriorhodopsin [General function prediction only]
Probab=41.53 E-value=20 Score=33.50 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=39.7
Q ss_pred ccccCCCccccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhh
Q 022881 12 MRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLW 89 (290)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~ 89 (290)
..+||+..+++-..+..++.+ |..-+++.+++.++ +--..+-+.|+ -|+..+...++|+++..+++++.
T Consensus 11 l~~~p~~g~~~~~~s~~S~wl---W~~~a~~~lla~~v-----l~~~~~~~~p~-~r~~~~~~~~ip~~s~lAY~tMa 79 (285)
T COG5524 11 LKLNPPTGADMHITSRGSDWL---WAVFAVFGLLAGVV-----LVLRMFRKGPP-DRYAYAPAAIIPLFSGLAYFTMA 79 (285)
T ss_pred cCcCCchhHHHHHhcccchHH---HHHHHHHHHHHhee-----eeeecccCCCC-ccchhHHHHHHHHHHHHHHHHHH
Confidence 346776665554443333333 33333332222222 22233334454 67778999999999999999987
No 8
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=41.15 E-value=20 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhH
Q 022881 36 FVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKW 69 (290)
Q Consensus 36 ~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~ 69 (290)
-..||+.++++.++..++++..+.+|-+++....
T Consensus 19 T~~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~~~ 52 (96)
T PF13850_consen 19 TSSGGIISIITIVLIVILFISELYSYLSGEIKYQ 52 (96)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHcccceeEE
Confidence 3467888999999999999999999999875443
No 9
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=37.16 E-value=39 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 022881 36 FVIGGCFALAAVVLSLFLILQHLRSYTNPA 65 (290)
Q Consensus 36 ~~iag~f~~~a~~is~~~I~~Hl~~y~~P~ 65 (290)
-.++.+...+++++-.--|..||.+|.+.+
T Consensus 15 ~aigltv~f~~~L~PagWVLshL~~YKk~~ 44 (44)
T PF02285_consen 15 QAIGLTVCFVTFLGPAGWVLSHLESYKKRE 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhccC
Confidence 345555556666666667889999998753
No 10
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=34.29 E-value=60 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=5.0
Q ss_pred HHHHHhhCCCcchhhHHHhhH
Q 022881 54 ILQHLRSYTNPAEQKWIVAVL 74 (290)
Q Consensus 54 I~~Hl~~y~~P~~Qr~IirIl 74 (290)
..--++.|.+-.+||+|-|.+
T Consensus 23 W~iv~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 23 WTIVYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HHHH------------CHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 334688999999999987654
No 11
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=34.20 E-value=58 Score=29.05 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCccccccccccccCCCccccccCcccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCcchhhH
Q 022881 2 LGVEDMHATGMRLAPSNIASAFSGNTYKDLHQPAFVIGGCFALAAV-VLSLFLILQHLRSYTNPAEQKW 69 (290)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iag~f~~~a~-~is~~~I~~Hl~~y~~P~~Qr~ 69 (290)
+|+.|++++...-..+++.. +. ..++++++|.+.++++ +...|...+ |+-.+|..||.
T Consensus 79 ~GIq~~s~~~~~~~~~~~~r------~~--~lI~lv~~g~~lLla~~~~~~Y~~~~--Rrs~~~~~~rl 137 (202)
T PF06365_consen 79 LGIQNFSEGDSCSHQSSSDR------YP--TLIALVTSGSFLLLAILLGAGYCCHQ--RRSWSKKGQRL 137 (202)
T ss_pred cCCcccccccccCCCCcCcc------ce--EEEehHHhhHHHHHHHHHHHHHHhhh--hccCCcchhhh
Confidence 58888877766555444433 11 4456666665544444 444454443 34446666664
No 12
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=30.72 E-value=99 Score=20.69 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022881 37 VIGGCFALAAVVLSLFLILQHLRSYTNP 64 (290)
Q Consensus 37 ~iag~f~~~a~~is~~~I~~Hl~~y~~P 64 (290)
.++.....++++.----+..||.+|.++
T Consensus 16 aigl~~~f~~~L~p~gWVLshL~~YKk~ 43 (43)
T cd00930 16 AIGLSVFFTTFLLPAGWVLSHLENYKKR 43 (43)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccC
Confidence 3444434455566666688899999864
No 13
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=29.74 E-value=3.5e+02 Score=22.94 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 022881 44 LAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLV 117 (290)
Q Consensus 44 ~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ly~F~~Lli 117 (290)
++++++...-++.-.+.-.+|..-|+| .+||+.-.++.+-..+|.... +.-+.-||+++-.+|+..+
T Consensus 8 ~~~i~m~~~vi~~R~ka~~rP~~~kkI----IlPplfmstG~lmf~~P~~~~---~~~~~l~A~~~G~lFs~~L 74 (148)
T PF07301_consen 8 IIAIVMALLVIFIRMKASKRPVNGKKI----ILPPLFMSTGFLMFVFPFFRP---PWLEVLEAFLVGALFSYPL 74 (148)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCcchH----HHhHHHHHHHHHHHhCccccc---hHHHHHHHHHHHHHHHHHH
Confidence 445555555667778888899765554 489999888888888887554 4568889999988887654
No 14
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=25.54 E-value=1e+02 Score=26.91 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCcc----hhhHHHhhHhhHHHHHHHhHhHhhc
Q 022881 44 LAAVVLSLFLILQHLRSYTNPA----EQKWIVAVLFMVPVYASESILSLWN 90 (290)
Q Consensus 44 ~~a~~is~~~I~~Hl~~y~~P~----~Qr~IirIl~mvPiyai~S~lsl~~ 90 (290)
.++-.+.-+-+..-+.+++.-. .=|.++-.+.+.|+|+|+++.=+++
T Consensus 16 ~lsgC~Gsfalt~kl~~~N~~~vdnKf~r~lvf~~~i~PVYgi~~~aD~lV 66 (176)
T PF11810_consen 16 SLSGCMGSFALTNKLYKWNKGVVDNKFVRELVFLFLISPVYGIAGLADLLV 66 (176)
T ss_pred HhccccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 3344445566677777877332 2222333388999999999876653
No 15
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=25.04 E-value=5.5e+02 Score=23.67 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHHHHHHHhHhHhhccch---------HHHHHHHH
Q 022881 31 LHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVPVYASESILSLWNPRL---------SLACDILR 101 (290)
Q Consensus 31 ~~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvPiyai~S~lsl~~p~~---------~~y~~~ir 101 (290)
.+..+...=|.-..+.+++.....+|...|-..|++++.-.+|..-+|-.+..+++.+--... ....+...
T Consensus 169 ~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T PF03595_consen 169 IIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKAAVAFPPHGQILRGVADLFA 248 (330)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT-------------TT---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhcccccccchhhhccccHHHHHH
Confidence 455555555555556666666677888777778889999999999999999999998874311 12334444
Q ss_pred HHHHHHHHHHHHHHHH
Q 022881 102 NCYEAFALYSFGSYLV 117 (290)
Q Consensus 102 d~YeA~~ly~F~~Lli 117 (290)
...-.+++..++..+.
T Consensus 249 ~~l~~~~~~~~~~~~~ 264 (330)
T PF03595_consen 249 LLLWGFALWWFFLALL 264 (330)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 16
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.57 E-value=2.6e+02 Score=20.74 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=45.0
Q ss_pred CccccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcch-----hhHHHhhHhhH
Q 022881 18 NIASAFSGNTYKDLHQPAFVIGGCFALAAVVLSLFLILQHLRSYTNPAE-----QKWIVAVLFMV 77 (290)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~-----Qr~IirIl~mv 77 (290)
++.++|+.....+.......+.|+...+..+-..|-+..-.+.+.+.+. .+.++|-..+.
T Consensus 4 aQ~~AF~aasG~~p~~l~~li~g~~~avllLW~aWa~~~~y~Gw~~~~v~~~~~~~~~iR~~~ll 68 (76)
T PF11660_consen 4 AQLAAFQAASGFTPSQLSLLILGILFAVLLLWAAWALWSAYRGWANGKVDFRDFLSFAIRFAVLL 68 (76)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3456777777788899999999999999999999999888888887642 33345554443
No 17
>PRK11056 hypothetical protein; Provisional
Probab=22.14 E-value=3.7e+02 Score=21.97 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhhHHHhhHhhHH
Q 022881 41 CFALAAVVLSLFLILQHLRSYTNPAEQKWIVAVLFMVP 78 (290)
Q Consensus 41 ~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~IirIl~mvP 78 (290)
+|-++|+++|.|..+|+..|.+.|+.--.+..-.+.+=
T Consensus 38 iFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG 75 (120)
T PRK11056 38 IFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLG 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 46788999999999999999999987544444333333
No 18
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=21.59 E-value=1.1e+02 Score=22.97 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=27.8
Q ss_pred hhhHHHhhHhhHHHHHHHhHhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022881 66 EQKWIVAVLFMVPVYASESILSLWNPRLSLACDILRNCYEAFALYSFGSYLVA 118 (290)
Q Consensus 66 ~Qr~IirIl~mvPiyai~S~lsl~~p~~~~y~~~ird~YeA~~ly~F~~Lli~ 118 (290)
++....|++.|+|.+-+.+..+. .-.+.++.+++..++.
T Consensus 2 r~~~~~R~l~mi~~~ivl~~~~~--------------~~~~~~~~q~~~~L~t 40 (80)
T PF14333_consen 2 REAVWLRLLLMIPFAIVLSLASI--------------VLGVLVLIQWFAILFT 40 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHc
Confidence 46678999999999876666554 4456677777766654
No 19
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=20.85 E-value=1.3e+02 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Q 022881 34 PAFVIGGCFALAAVVLSLFLILQHLRSYTNPAE 66 (290)
Q Consensus 34 ~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~~ 66 (290)
++.++||+++.++.+|..+.+..+..+|..|+.
T Consensus 4 I~~iis~~l~~i~~~i~~~~~~~~~~~~~~~k~ 36 (314)
T PF07146_consen 4 IGLIISLILGGIALAILLFTIIAEIKKYSQPKN 36 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 567899999999999999999999997776643
No 20
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=20.44 E-value=4.3e+02 Score=21.52 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhhHHH
Q 022881 41 CFALAAVVLSLFLILQHLRSYTNPAEQKWIV 71 (290)
Q Consensus 41 ~f~~~a~~is~~~I~~Hl~~y~~P~~Qr~Ii 71 (290)
+|-++|++++.+..+|+..|.+.|+.--.+.
T Consensus 38 iFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a 68 (117)
T PF07226_consen 38 IFPLIALVLAVYCLYQRYLNHPMPEGTPKLA 68 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 5678899999999999999999997644433
Done!