Query 022881
Match_columns 290
No_of_seqs 129 out of 510
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_M VIIIB, IX, cytochrome C 35.1 29 0.001 22.6 2.7 30 36-65 15-44 (46)
2 2y69_M Cytochrome C oxidase po 28.8 86 0.0029 22.2 4.5 32 34-65 37-68 (70)
3 1m0k_A BR, bacteriorhodopsin; 19.9 2.7E+02 0.0093 24.3 7.2 28 62-89 47-74 (262)
4 1zl8_A LIN-7; heterodimer, alp 18.1 67 0.0023 21.3 2.0 14 94-107 39-52 (53)
5 1kbh_B CREB-binding protein, n 18.1 97 0.0033 21.0 2.8 28 51-78 10-37 (59)
6 1zoq_C CREB-binding protein, i 14.7 60 0.002 21.0 1.1 28 51-78 3-30 (47)
7 3dl8_E Protein-export membrane 9.3 4.2E+02 0.014 20.0 4.6 35 19-53 38-73 (107)
8 1kf6_D Fumarate reductase 13 k 8.4 7.1E+02 0.024 19.2 7.2 78 180-258 23-106 (119)
9 4htp_A DNA ligase 4; helical d 8.4 1.6E+02 0.0055 25.3 2.1 22 54-75 170-191 (240)
10 3din_E Preprotein translocase 8.4 5.2E+02 0.018 18.0 4.5 32 19-50 39-71 (76)
No 1
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=35.07 E-value=29 Score=22.60 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 022881 36 FVIGGCFALAAVVLSLFLILQHLRSYTNPA 65 (290)
Q Consensus 36 ~~iag~f~~~a~~is~~~I~~Hl~~y~~P~ 65 (290)
..++.....+++++----+..|+.+|.+++
T Consensus 15 ~aigl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 345555556677777677889999999874
No 2
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=28.75 E-value=86 Score=22.19 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Q 022881 34 PAFVIGGCFALAAVVLSLFLILQHLRSYTNPA 65 (290)
Q Consensus 34 ~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P~ 65 (290)
.-..++.+...+++++-.--+..|+.+|.+.+
T Consensus 37 ~E~aigltv~f~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 37 KEQAIGLSVTFLSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 33455666566677777677889999999874
No 3
>1m0k_A BR, bacteriorhodopsin; ION pump, membrane protein, retinal protein, lipids, photore haloarchaea, 7-transmembrane, serpentine; HET: RET LI1 SQU; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1 PDB: 1m0l_A* 1m0m_A* 2zfe_A* 2zzl_A* 1p8h_A* 1o0a_A* 1py6_A* 1r2n_A* 1ucq_A* 1vjm_A* 2ntu_A* 2ntw_A* 3har_A* 1c8r_A* 2wjk_A* 2wjl_A* 2i21_A* 1p8i_A* 1p8u_A* 3han_A* ...
Probab=19.91 E-value=2.7e+02 Score=24.25 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCcchhhHHHhhHhhHHHHHHHhHhHhh
Q 022881 62 TNPAEQKWIVAVLFMVPVYASESILSLW 89 (290)
Q Consensus 62 ~~P~~Qr~IirIl~mvPiyai~S~lsl~ 89 (290)
+.+.+.|....+..+++..|..+.+.+.
T Consensus 47 ~~~~~~R~~~~v~~lit~IAa~~Y~~Ma 74 (262)
T 1m0k_A 47 VSDPDAKKFYAITTLVPAIAFTMYLSML 74 (262)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceehhhHHHHHHHHHHHHHHHHH
Confidence 3445566667789999999998888875
No 4
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=18.12 E-value=67 Score=21.35 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 022881 94 SLACDILRNCYEAF 107 (290)
Q Consensus 94 ~~y~~~ird~YeA~ 107 (290)
+-+|+.+|++||-.
T Consensus 39 SdF~~aVREVYEhv 52 (53)
T 1zl8_A 39 SEFFGAVREVYETV 52 (53)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 45899999999963
No 5
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=18.10 E-value=97 Score=20.98 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCCCcchhhHHHhhHhhHH
Q 022881 51 LFLILQHLRSYTNPAEQKWIVAVLFMVP 78 (290)
Q Consensus 51 ~~~I~~Hl~~y~~P~~Qr~IirIl~mvP 78 (290)
+..+.+-+++=+.|+.|-+++.||=-=|
T Consensus 10 LqqLl~tlksp~speqqqqvl~ILksNP 37 (59)
T 1kbh_B 10 LQDLLRTLKSPSSPQQQQQVLNILKSNP 37 (59)
T ss_dssp HHHHHHHHHSCTTTTCSTHHHHHHTTSH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCH
Confidence 4567888999999999999999985444
No 6
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=14.69 E-value=60 Score=21.01 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCCcchhhHHHhhHhhHH
Q 022881 51 LFLILQHLRSYTNPAEQKWIVAVLFMVP 78 (290)
Q Consensus 51 ~~~I~~Hl~~y~~P~~Qr~IirIl~mvP 78 (290)
+..+.+-+++=+.|+.|-+++.||=-=|
T Consensus 3 LqqLl~tlksp~sp~qqqqvl~ILksnP 30 (47)
T 1zoq_C 3 LQDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 3456677788888899999999985544
No 7
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=9.29 E-value=4.2e+02 Score=20.04 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.1
Q ss_pred ccccccCc-ccccchhHHHHHHHHHHHHHHHHHHHH
Q 022881 19 IASAFSGN-TYKDLHQPAFVIGGCFALAAVVLSLFL 53 (290)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~iag~f~~~a~~is~~~ 53 (290)
..+.|..+ ....+...-|.+|.+|.+++++++...
T Consensus 38 s~slfG~rg~~~~L~K~T~ilailF~v~sl~L~~l~ 73 (107)
T 3dl8_E 38 GQSIFGVGGVETILTKATYWLGALFLVLALLLSVIP 73 (107)
T ss_dssp SCCCCCSSCCCCCTTHHHHHHHHHHHHHHHHHHCC-
T ss_pred cccccccchHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778776 346688999999999999999887554
No 8
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=8.45 E-value=7.1e+02 Score=19.20 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=52.1
Q ss_pred hhHhHHHHHHHHHHHHHHHhhccCCccccccccc----hhh-HHHHHHHHHHHHHHHH-HHHHhchhcCCCCCCchhHHH
Q 022881 180 VQYMILKTVCAFLAFLLELFGVYGDGEFKWYYGY----PYL-AVVLNFSQMWALYCLV-KFYNVTHEGLEPIKPLAKFIS 253 (290)
Q Consensus 180 lQ~~ivkpl~~ii~iil~~~g~Y~~g~~~~~~~~----~yl-~ii~~iS~~lAly~L~-~fy~~~~~~L~~~~P~~KFl~ 253 (290)
.=..++-|++-++.-++--.|..+.+..+..... -|+ ..+....+.+-+|+=. .+|+.+|| |+=+.|..|..|
T Consensus 23 m~sAl~~PvliLl~GillPlG~~~~~~lsY~~~~aFa~s~ig~l~ll~~i~lplWh~~HRihh~lHD-lkih~~~~~~~~ 101 (119)
T 1kf6_D 23 MWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGKWVF 101 (119)
T ss_dssp HHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh-heeecCcchhhH
Confidence 3355667777777777778888776655433221 222 4455566677778755 89999886 888889999888
Q ss_pred HHHHH
Q 022881 254 FKAIV 258 (290)
Q Consensus 254 iKlvv 258 (290)
--...
T Consensus 102 Yg~A~ 106 (119)
T 1kf6_D 102 YGLAA 106 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
No 9
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=8.44 E-value=1.6e+02 Score=25.31 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=16.3
Q ss_pred HHHHHhhCCCcchhhHHHhhHh
Q 022881 54 ILQHLRSYTNPAEQKWIVAVLF 75 (290)
Q Consensus 54 I~~Hl~~y~~P~~Qr~IirIl~ 75 (290)
+...+..=.+|.+||+++||+.
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHh
Confidence 3444555578999999999974
No 10
>3din_E Preprotein translocase subunit SECG; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga SP}
Probab=8.36 E-value=5.2e+02 Score=18.02 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=24.4
Q ss_pred ccccccCcc-cccchhHHHHHHHHHHHHHHHHH
Q 022881 19 IASAFSGNT-YKDLHQPAFVIGGCFALAAVVLS 50 (290)
Q Consensus 19 ~~~~~~~~~-~~~~~~~~~~iag~f~~~a~~is 50 (290)
+.+.|..+. .......-+.+|.+|.+.++.++
T Consensus 39 s~~~fg~~~~~~~L~k~T~~la~~F~v~sl~l~ 71 (76)
T 3din_E 39 LHTVFGRRKGLDTGGKITLVLSVLFFVSCVVTA 71 (76)
T ss_dssp TCCCCCCSSCSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457787753 34578888999999999888876
Done!