Query 022881
Match_columns 290
No_of_seqs 129 out of 510
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 12:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6d_ f.21.2.2 (D:) Fumarate 25.2 1.1E+02 0.0082 21.9 7.3 81 180-261 23-109 (119)
2 d1zl8a1 a.194.1.1 (A:4-53) Lin 25.2 16 0.0012 22.5 1.7 13 94-106 36-48 (50)
3 d1y74a1 a.194.1.1 (A:17-73) Li 22.9 18 0.0013 22.9 1.6 15 93-107 36-50 (57)
4 d1v54m_ f.23.7.1 (M:) Mitochon 18.4 42 0.0031 20.0 2.6 28 36-63 15-42 (43)
5 d1zoqc1 a.153.1.1 (C:2065-2111 10.3 47 0.0034 19.7 1.1 27 52-78 4-30 (47)
6 d2fug21 c.47.1.21 (2:3-180) NA 7.7 1.7E+02 0.012 22.2 3.8 42 49-90 26-69 (178)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.2 83 0.0061 16.3 1.1 14 108-121 9-22 (26)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 4.6 4.3E+02 0.031 17.6 4.3 42 16-57 13-60 (107)
9 d1x9na1 a.235.1.1 (A:262-533) 4.3 1.8E+02 0.013 23.4 2.1 20 55-75 167-186 (272)
10 d1xl4a2 f.14.1.1 (A:23-138) In 3.9 5.5E+02 0.04 16.8 5.2 33 32-64 84-116 (116)
No 1
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=25.20 E-value=1.1e+02 Score=21.88 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=56.3
Q ss_pred hhHhHHHHHHHHHHHHHHHhhccCCcccccccc----chhh-HHHHHHHHHHHHHH-HHHHHHhchhcCCCCCCchhHHH
Q 022881 180 VQYMILKTVCAFLAFLLELFGVYGDGEFKWYYG----YPYL-AVVLNFSQMWALYC-LVKFYNVTHEGLEPIKPLAKFIS 253 (290)
Q Consensus 180 lQ~~ivkpl~~ii~iil~~~g~Y~~g~~~~~~~----~~yl-~ii~~iS~~lAly~-L~~fy~~~~~~L~~~~P~~KFl~ 253 (290)
.=..++-|++-++.-++-..|....+..+..+. +-|+ ..+....+.+-+|+ +..+++.+| +|+=+.|.+|.+|
T Consensus 23 m~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglH-Dlkih~p~g~~~f 101 (119)
T d1kf6d_ 23 MWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMH-DLKIHVPAGKWVF 101 (119)
T ss_dssp HHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccchhHHH
Confidence 345677888888888888899987776654433 2333 45556677777775 777888877 6777789999887
Q ss_pred HHHHHHHH
Q 022881 254 FKAIVFAT 261 (290)
Q Consensus 254 iKlvvfls 261 (290)
--+....|
T Consensus 102 Yg~A~l~s 109 (119)
T d1kf6d_ 102 YGLAAILT 109 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66544443
No 2
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=25.17 E-value=16 Score=22.52 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 022881 94 SLACDILRNCYEA 106 (290)
Q Consensus 94 ~~y~~~ird~YeA 106 (290)
+-+|+.+|++||-
T Consensus 36 SdF~~avREVYe~ 48 (50)
T d1zl8a1 36 SEFFGAVREVYET 48 (50)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4589999999995
No 3
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.86 E-value=18 Score=22.91 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHH
Q 022881 93 LSLACDILRNCYEAF 107 (290)
Q Consensus 93 ~~~y~~~ird~YeA~ 107 (290)
.+-+|+.+|++||-.
T Consensus 36 qSdF~~avREVYehv 50 (57)
T d1y74a1 36 QSRFCSAIREVYEQL 50 (57)
T ss_dssp HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346899999999864
No 4
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.38 E-value=42 Score=19.95 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 022881 36 FVIGGCFALAAVVLSLFLILQHLRSYTN 63 (290)
Q Consensus 36 ~~iag~f~~~a~~is~~~I~~Hl~~y~~ 63 (290)
..||-..+.++++.-.--|..|+-+|.+
T Consensus 15 ~aigLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 3455555667777777788999999865
No 5
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.27 E-value=47 Score=19.74 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHHHHHHhhCCCcchhhHHHhhHhhHH
Q 022881 52 FLILQHLRSYTNPAEQKWIVAVLFMVP 78 (290)
Q Consensus 52 ~~I~~Hl~~y~~P~~Qr~IirIl~mvP 78 (290)
-.+.+-+++=+.|++|..+.-|+=-=|
T Consensus 4 q~Ll~tLrsP~sP~QQqQvL~ILksNP 30 (47)
T d1zoqc1 4 QDLLRTLKSPSSPQQQQQVLNILKSNP 30 (47)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHcCH
Confidence 345666777788899999988875544
No 6
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=7.67 E-value=1.7e+02 Score=22.17 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhCCCcchhhHHHhhHhhHH--HHHHHhHhHhhc
Q 022881 49 LSLFLILQHLRSYTNPAEQKWIVAVLFMVP--VYASESILSLWN 90 (290)
Q Consensus 49 is~~~I~~Hl~~y~~P~~Qr~IirIl~mvP--iyai~S~lsl~~ 90 (290)
|..-+..|+-.+|-.++.++.|-+.+-|.| ||++.||-+.+.
T Consensus 26 i~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~ 69 (178)
T d2fug21 26 MPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQ 69 (178)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchhc
Confidence 344455666677777778888888888877 778888877763
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.23 E-value=83 Score=16.29 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhC
Q 022881 108 ALYSFGSYLVACLG 121 (290)
Q Consensus 108 ~ly~F~~Lli~ylG 121 (290)
..+.||.+++-|+.
T Consensus 9 ~fw~ffalli~ylq 22 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34667888887754
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=4.62 E-value=4.3e+02 Score=17.60 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=22.3
Q ss_pred CCCccccccCc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022881 16 PSNIASAFSGN------TYKDLHQPAFVIGGCFALAAVVLSLFLILQH 57 (290)
Q Consensus 16 ~~~~~~~~~~~------~~~~~~~~~~~iag~f~~~a~~is~~~I~~H 57 (290)
|..-...|++. ...++|...+.+++...++...+-.+.+++|
T Consensus 13 P~~~ql~fqd~~Sp~ae~i~~lh~~v~~i~~~I~~~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 13 PVNGGMNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRF 60 (107)
T ss_dssp CCTTCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444555553 1345677666666654444444555555554
No 9
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.27 E-value=1.8e+02 Score=23.41 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=14.2
Q ss_pred HHHHhhCCCcchhhHHHhhHh
Q 022881 55 LQHLRSYTNPAEQKWIVAVLF 75 (290)
Q Consensus 55 ~~Hl~~y~~P~~Qr~IirIl~ 75 (290)
.+.+.+ .+|.++|+++|++.
T Consensus 167 ~~Ll~~-~~~~E~kyliR~l~ 186 (272)
T d1x9na1 167 KGLFVA-CRHSEARFIARSLS 186 (272)
T ss_dssp HHHHHH-CCSTHHHHHHHHHT
T ss_pred HHHHHh-CCHHHHHHHHHHHH
Confidence 333444 57899999999864
No 10
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=3.92 E-value=5.5e+02 Score=16.81 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 022881 32 HQPAFVIGGCFALAAVVLSLFLILQHLRSYTNP 64 (290)
Q Consensus 32 ~~~~~~iag~f~~~a~~is~~~I~~Hl~~y~~P 64 (290)
...+.+++...++.++++..+.+..-..++++|
T Consensus 84 t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fsrP 116 (116)
T d1xl4a2 84 GPLANTLVTLEALCGMLGLAVAASLIYARFTRP 116 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 445566666667777777777776666776666
Done!