BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022883
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZA|A Chain A, X-Ray Structure Of Northeast Structural Genomics
Consortium Target Sor45
pdb|1TZA|B Chain B, X-Ray Structure Of Northeast Structural Genomics
Consortium Target Sor45
Length = 134
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
IRV+V++ YIE +S P +Y F+Y + I N E+ +L RHWIITDANGKT + G G
Sbjct: 8 IRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAG 67
Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG 284
V+GE P I PNT+++Y+S L TP G G + V G FN I PF L+T G
Sbjct: 68 VVGETPTIPPNTAYQYTSGTVLDTPFGIXYGTY--GXVSESGEH-FNAIIKPFRLATPG 123
>pdb|1XQ4|A Chain A, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
pdb|1XQ4|B Chain B, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
pdb|1XQ4|C Chain C, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
pdb|1XQ4|D Chain D, Crystal Structure Of The Putative Apaa Protein From
Bordetella Pertussis, Northeast Structural Genomics
Target Ber40
Length = 139
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
+ V V Y+ ++S P + QY FAY VRITN P Q++ RHWIITD + + + G+G
Sbjct: 13 LTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLG 72
Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLS 281
V+G+QP++ P +FEY+S CPL TP G G + H F V IA F L+
Sbjct: 73 VVGQQPLLAPGETFEYTSGCPLPTPIGTXRGTY---HCVGENGIPFEVPIAEFLLA 125
>pdb|2F1E|A Chain A, Solution Structure Of Apag Protein
Length = 127
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 166 IRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVG 225
+ V+V ++ +S P +G+Y FAY +RI N P +L+ RHW ITD NG+TE + G G
Sbjct: 9 VEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEG 68
Query: 226 VIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLST 282
V+GEQP + P +F Y+S L T G+M+G ++M D F IA F LS
Sbjct: 69 VVGEQPWLRPGEAFHYTSGVLLETEQGQMQGHYDMVADD---GTEFIAPIAAFVLSV 122
>pdb|1XVS|A Chain A, Crystal Structure Of Apag Protein From Vibrio Cholerae
pdb|1XVS|B Chain B, Crystal Structure Of Apag Protein From Vibrio Cholerae
Length = 126
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTE 219
D + I++QV++ YIE++S P ++ FAY + I N S + VQL R W+ITDA+GK
Sbjct: 2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLXSRRWLITDADGKQT 61
Query: 220 NILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFS 279
+ G GV+GEQP I N + YSS L TP G +G + +D G ++F V I PF
Sbjct: 62 VVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVXQGQY--LXIDEQG-ESFTVEIEPFR 118
Query: 280 LS 281
L+
Sbjct: 119 LA 120
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 127 MKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGI 166
MKEA+ +E FE+AA+Y ++ + P + C + +GI
Sbjct: 105 MKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGI 144
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 134 ERFEDAARYRDKLKEIAPNSLLKCLSD 160
E + +A DKL E+ P +LL+CL D
Sbjct: 163 EASDTSASXYDKLAELGPQALLECLQD 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,279,592
Number of Sequences: 62578
Number of extensions: 270783
Number of successful extensions: 675
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 7
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)