Query 022883
Match_columns 290
No_of_seqs 254 out of 795
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 06:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2967 ApaG Uncharacterized p 100.0 2.5E-50 5.4E-55 332.6 14.5 123 160-285 2-124 (126)
2 PRK05461 apaG CO2+/MG2+ efflux 100.0 1.7E-49 3.6E-54 333.4 16.8 123 159-284 2-124 (127)
3 PF04379 DUF525: Protein of un 100.0 1.2E-38 2.5E-43 253.5 10.3 88 175-262 1-88 (90)
4 KOG4408 Putative Mg2+ and Co2+ 100.0 2E-36 4.3E-41 286.7 12.9 165 121-288 207-378 (386)
5 COG3880 Modulator of heat shoc 99.0 3.3E-10 7.1E-15 99.5 5.9 67 76-151 90-169 (176)
6 COG3880 Modulator of heat shoc 98.0 5.3E-06 1.2E-10 73.3 4.6 44 74-117 127-170 (176)
7 PF02151 UVR: UvrB/uvrC motif; 97.8 3.2E-05 6.9E-10 51.8 4.0 30 85-114 4-33 (36)
8 PF02151 UVR: UvrB/uvrC motif; 97.7 4.2E-05 9.1E-10 51.2 3.7 30 121-150 5-34 (36)
9 PRK05298 excinuclease ABC subu 94.1 0.093 2E-06 55.0 6.0 33 118-150 613-645 (652)
10 PRK07883 hypothetical protein; 93.5 0.078 1.7E-06 54.7 4.1 45 107-151 393-439 (557)
11 PRK00558 uvrC excinuclease ABC 93.4 0.088 1.9E-06 54.9 4.4 44 108-151 190-235 (598)
12 TIGR00631 uvrb excinuclease AB 93.3 0.11 2.4E-06 54.6 4.9 32 119-150 624-655 (655)
13 TIGR00631 uvrb excinuclease AB 93.0 0.12 2.6E-06 54.5 4.5 33 83-115 623-655 (655)
14 PRK14666 uvrC excinuclease ABC 92.9 0.12 2.5E-06 54.9 4.5 34 117-150 200-233 (694)
15 COG0556 UvrB Helicase subunit 92.9 0.12 2.7E-06 53.5 4.4 32 120-151 626-657 (663)
16 COG0556 UvrB Helicase subunit 92.9 0.16 3.5E-06 52.7 5.3 37 79-115 620-656 (663)
17 PRK12306 uvrC excinuclease ABC 92.8 0.13 2.9E-06 52.8 4.5 43 108-150 180-224 (519)
18 PRK07883 hypothetical protein; 92.4 0.14 3E-06 52.9 4.0 34 82-115 405-438 (557)
19 PF11611 DUF4352: Domain of un 92.4 0.92 2E-05 36.2 8.1 60 161-220 7-70 (123)
20 TIGR00194 uvrC excinuclease AB 92.4 0.16 3.5E-06 52.8 4.5 43 108-150 182-226 (574)
21 PRK14667 uvrC excinuclease ABC 92.3 0.16 3.5E-06 52.8 4.4 42 109-150 188-231 (567)
22 PRK14669 uvrC excinuclease ABC 92.3 0.14 3E-06 53.8 4.0 35 117-151 202-236 (624)
23 PF14263 DUF4354: Domain of un 92.3 0.82 1.8E-05 38.9 7.9 75 161-237 22-98 (124)
24 PRK14670 uvrC excinuclease ABC 92.3 0.14 3E-06 53.3 3.9 35 117-151 176-210 (574)
25 PRK00558 uvrC excinuclease ABC 92.1 0.17 3.7E-06 52.8 4.3 34 82-115 201-234 (598)
26 PRK14672 uvrC excinuclease ABC 92.1 0.17 3.7E-06 53.6 4.4 34 117-150 204-237 (691)
27 PRK14671 uvrC excinuclease ABC 91.9 0.18 4E-06 52.8 4.4 34 117-150 214-247 (621)
28 PRK14668 uvrC excinuclease ABC 91.9 0.19 4.2E-06 52.3 4.5 34 118-151 199-232 (577)
29 PRK05298 excinuclease ABC subu 91.9 0.18 3.9E-06 52.9 4.3 33 83-115 613-645 (652)
30 PRK12306 uvrC excinuclease ABC 90.8 0.25 5.4E-06 50.8 3.9 33 83-115 192-224 (519)
31 PRK14666 uvrC excinuclease ABC 90.7 0.26 5.6E-06 52.4 4.0 33 83-115 201-233 (694)
32 PHA02571 a-gt.4 hypothetical p 90.1 1.6 3.4E-05 36.4 7.3 57 83-148 14-78 (109)
33 PRK14668 uvrC excinuclease ABC 90.0 0.3 6.4E-06 50.9 3.8 33 83-115 199-231 (577)
34 PRK14671 uvrC excinuclease ABC 90.0 0.31 6.7E-06 51.2 3.9 34 82-115 214-247 (621)
35 PRK14667 uvrC excinuclease ABC 90.0 0.31 6.8E-06 50.7 3.9 33 83-115 199-231 (567)
36 COG0322 UvrC Nuclease subunit 89.8 0.31 6.7E-06 50.9 3.7 32 120-151 204-235 (581)
37 PRK14670 uvrC excinuclease ABC 89.7 0.35 7.5E-06 50.4 3.9 33 83-115 177-209 (574)
38 PRK14669 uvrC excinuclease ABC 89.6 0.36 7.9E-06 50.7 4.0 33 83-115 203-235 (624)
39 PRK14672 uvrC excinuclease ABC 89.5 0.43 9.3E-06 50.7 4.5 33 83-115 205-237 (691)
40 TIGR00194 uvrC excinuclease AB 89.4 0.37 8.1E-06 50.1 3.9 33 83-115 194-226 (574)
41 COG0322 UvrC Nuclease subunit 87.6 0.58 1.3E-05 48.9 4.0 33 83-115 202-234 (581)
42 PF15469 Sec5: Exocyst complex 86.7 2.3 5.1E-05 37.0 6.7 51 99-149 65-115 (182)
43 KOG4825 Component of synaptic 86.3 0.84 1.8E-05 46.7 4.1 64 85-148 173-237 (666)
44 PF06476 DUF1090: Protein of u 85.1 3.6 7.8E-05 34.4 6.7 74 75-148 16-107 (115)
45 PF07743 HSCB_C: HSCB C-termin 80.7 9.2 0.0002 28.9 7.0 59 84-147 9-67 (78)
46 PF12690 BsuPI: Intracellular 75.4 22 0.00047 27.7 7.8 70 189-261 3-81 (82)
47 PF14559 TPR_19: Tetratricopep 73.4 14 0.00031 25.8 5.9 56 95-151 1-56 (68)
48 PF04420 CHD5: CHD5-like prote 70.4 15 0.00032 32.1 6.4 39 83-130 40-85 (161)
49 TIGR02695 azurin azurin. Azuri 70.3 4 8.6E-05 34.9 2.7 70 189-259 26-124 (125)
50 PF06159 DUF974: Protein of un 69.7 29 0.00064 32.3 8.6 63 186-248 135-208 (249)
51 PF15290 Syntaphilin: Golgi-lo 68.2 18 0.00038 35.1 6.8 16 83-98 68-83 (305)
52 PF09577 Spore_YpjB: Sporulati 65.1 22 0.00048 33.2 6.7 68 83-150 3-89 (232)
53 PRK01773 hscB co-chaperone Hsc 64.9 26 0.00056 31.2 6.9 60 83-147 95-154 (173)
54 TIGR00714 hscB Fe-S protein as 64.1 33 0.00071 29.8 7.3 61 81-146 79-139 (157)
55 PF04880 NUDE_C: NUDE protein, 63.4 6.5 0.00014 35.0 2.8 14 85-98 2-15 (166)
56 PF14874 PapD-like: Flagellar- 63.1 68 0.0015 24.7 12.1 74 187-275 21-97 (102)
57 PF03693 RHH_2: Uncharacterise 61.1 13 0.00028 29.0 3.8 48 87-134 12-61 (80)
58 PRK10404 hypothetical protein; 60.6 55 0.0012 26.7 7.5 64 83-151 12-80 (101)
59 TIGR02606 antidote_CC2985 puta 58.7 20 0.00043 27.2 4.3 45 87-131 9-55 (69)
60 PF09478 CBM49: Carbohydrate b 58.2 32 0.00069 26.3 5.5 50 184-241 15-75 (80)
61 PRK11020 hypothetical protein; 57.9 40 0.00087 28.6 6.3 36 82-117 11-46 (118)
62 PF15058 Speriolin_N: Sperioli 56.8 19 0.00042 33.0 4.6 30 83-117 5-34 (200)
63 PF13371 TPR_9: Tetratricopept 56.6 50 0.0011 23.3 6.1 57 94-151 4-60 (73)
64 PRK03578 hscB co-chaperone Hsc 56.1 51 0.0011 29.3 7.2 59 84-147 99-158 (176)
65 PRK05014 hscB co-chaperone Hsc 56.0 48 0.001 29.2 6.9 60 83-147 93-153 (171)
66 PF13432 TPR_16: Tetratricopep 55.6 67 0.0015 22.3 6.8 57 93-151 5-62 (65)
67 PF10849 DUF2654: Protein of u 53.4 36 0.00079 26.4 5.0 32 108-148 13-48 (70)
68 PF13838 Clathrin_H_link: Clat 51.3 19 0.00041 27.5 3.2 22 86-107 7-28 (66)
69 KOG3850 Predicted membrane pro 50.2 64 0.0014 32.7 7.4 11 85-95 262-272 (455)
70 PF04420 CHD5: CHD5-like prote 49.4 15 0.00033 32.0 2.7 44 98-150 36-79 (161)
71 PRK10564 maltose regulon perip 46.4 44 0.00095 32.6 5.5 35 83-117 255-289 (303)
72 PF07064 RIC1: RIC1; InterPro 43.8 1E+02 0.0022 29.1 7.4 63 89-151 183-251 (258)
73 PF10475 DUF2450: Protein of u 43.5 51 0.0011 31.1 5.5 38 112-149 119-156 (291)
74 PLN03088 SGT1, suppressor of 42.4 1.1E+02 0.0024 29.6 7.7 55 97-152 48-102 (356)
75 PF00932 LTD: Lamin Tail Domai 40.7 26 0.00056 27.8 2.6 45 191-244 27-71 (116)
76 PRK01356 hscB co-chaperone Hsc 40.2 93 0.002 27.3 6.3 27 121-147 123-149 (166)
77 KOG2376 Signal recognition par 39.1 79 0.0017 33.8 6.4 62 86-148 13-74 (652)
78 PF14276 DUF4363: Domain of un 39.0 1.4E+02 0.003 24.2 6.8 61 80-140 23-97 (121)
79 PF13512 TPR_18: Tetratricopep 38.7 90 0.002 27.1 5.8 59 90-151 15-78 (142)
80 KOG0412 Golgi transport comple 37.7 50 0.0011 35.8 4.8 54 91-145 136-209 (773)
81 COG3241 Azurin [Energy product 36.9 32 0.00069 29.8 2.7 73 188-261 49-150 (151)
82 PF11464 Rbsn: Rabenosyn Rab b 36.8 1.5E+02 0.0032 20.8 5.8 29 84-112 4-32 (42)
83 PRK00294 hscB co-chaperone Hsc 36.1 1.4E+02 0.0031 26.5 6.8 58 84-146 96-154 (173)
84 PF03732 Retrotrans_gag: Retro 35.8 1.1E+02 0.0025 22.4 5.4 65 83-149 27-94 (96)
85 PF12137 RapA_C: RNA polymeras 35.7 1.2E+02 0.0025 30.3 6.8 60 83-151 38-107 (362)
86 PF14853 Fis1_TPR_C: Fis1 C-te 35.7 76 0.0016 22.9 4.1 38 97-134 13-51 (53)
87 TIGR02878 spore_ypjB sporulati 35.4 2E+02 0.0043 27.2 7.8 68 83-150 3-90 (233)
88 KOG0412 Golgi transport comple 35.1 74 0.0016 34.6 5.6 28 124-151 134-161 (773)
89 PF03398 Ist1: Regulator of Vp 34.7 2E+02 0.0042 25.2 7.4 57 88-145 7-63 (165)
90 PF06355 Aegerolysin: Aegeroly 33.8 2.6E+02 0.0057 23.8 7.8 83 191-286 5-93 (131)
91 KOG3032 Uncharacterized conser 33.5 1.2E+02 0.0025 29.0 6.0 34 82-115 166-204 (264)
92 PF13801 Metal_resist: Heavy-m 32.5 1.4E+02 0.0029 23.0 5.5 29 99-136 56-84 (125)
93 PLN02168 copper ion binding / 32.2 49 0.0011 34.5 3.7 48 191-244 68-115 (545)
94 KOG4657 Uncharacterized conser 31.9 4.3E+02 0.0093 25.1 9.4 30 99-128 83-112 (246)
95 KOG0553 TPR repeat-containing 31.8 64 0.0014 31.5 4.1 71 80-151 76-146 (304)
96 PF07743 HSCB_C: HSCB C-termin 31.5 2E+02 0.0044 21.4 6.1 30 83-112 38-67 (78)
97 PF14016 DUF4232: Protein of u 30.5 1.3E+02 0.0028 24.7 5.4 66 163-237 3-72 (131)
98 KOG4807 F-actin binding protei 28.9 1.5E+02 0.0031 30.5 6.2 20 83-102 526-545 (593)
99 PRK10548 flagellar biosynthesi 28.8 2.3E+02 0.005 23.8 6.6 71 77-147 6-83 (121)
100 PLN03014 carbonic anhydrase 28.6 3.4E+02 0.0074 27.1 8.6 73 85-158 83-168 (347)
101 PF13598 DUF4139: Domain of un 28.3 1.5E+02 0.0032 27.8 5.9 42 164-205 218-261 (317)
102 PF01917 Arch_flagellin: Archa 27.9 2.5E+02 0.0054 24.5 7.0 49 160-214 45-94 (190)
103 PF10392 COG5: Golgi transport 27.6 1.6E+02 0.0035 24.6 5.5 68 77-149 34-112 (132)
104 PRK00260 cysS cysteinyl-tRNA s 27.6 2.2E+02 0.0048 28.8 7.4 30 121-150 419-448 (463)
105 KOG3691 Exocyst complex subuni 27.5 1.9E+02 0.0042 32.3 7.2 75 75-149 88-172 (982)
106 PLN03077 Protein ECB2; Provisi 27.4 5.4E+02 0.012 27.6 10.6 48 131-182 702-749 (857)
107 cd00916 Npc2_like Niemann-Pick 27.3 1.6E+02 0.0035 24.3 5.4 45 229-276 76-122 (123)
108 KOG0553 TPR repeat-containing 26.3 3.9E+02 0.0085 26.2 8.4 35 123-157 84-119 (304)
109 PF11464 Rbsn: Rabenosyn Rab b 25.7 1.9E+02 0.004 20.4 4.5 29 122-150 7-35 (42)
110 PF07732 Cu-oxidase_3: Multico 25.6 41 0.0009 27.6 1.5 47 190-242 36-83 (117)
111 TIGR02231 conserved hypothetic 25.6 3.7E+02 0.0081 27.4 8.7 20 185-204 441-460 (525)
112 PF07705 CARDB: CARDB; InterP 25.0 1.3E+02 0.0029 22.3 4.2 52 188-248 21-72 (101)
113 PRK09039 hypothetical protein; 24.9 5.4E+02 0.012 25.1 9.3 25 121-146 175-199 (343)
114 PF15067 FAM124: FAM124 family 24.3 3.3E+02 0.0072 25.8 7.3 84 134-218 139-232 (236)
115 PF06248 Zw10: Centromere/kine 24.3 2.2E+02 0.0048 29.5 6.8 30 119-148 107-136 (593)
116 PF06476 DUF1090: Protein of u 24.1 1.9E+02 0.004 24.2 5.1 39 83-130 77-115 (115)
117 PLN02792 oxidoreductase 24.1 70 0.0015 33.2 3.2 49 190-244 57-105 (536)
118 KOG3364 Membrane protein invol 24.1 1.1E+02 0.0023 27.1 3.8 38 99-136 85-123 (149)
119 PF09738 DUF2051: Double stran 23.6 4.6E+02 0.01 25.5 8.4 20 84-105 78-97 (302)
120 PF10388 YkuI_C: EAL-domain as 23.3 2E+02 0.0043 25.3 5.5 81 80-172 3-85 (166)
121 PF00127 Copper-bind: Copper b 23.2 1.8E+02 0.0039 22.7 4.7 14 229-242 60-73 (99)
122 PF13414 TPR_11: TPR repeat; P 23.2 2.6E+02 0.0057 19.3 7.6 57 93-151 11-69 (69)
123 COG4105 ComL DNA uptake lipopr 22.6 4.3E+02 0.0093 25.2 7.8 67 85-151 34-102 (254)
124 PF08625 Utp13: Utp13 specific 22.5 1.5E+02 0.0033 25.4 4.4 56 90-151 2-60 (141)
125 TIGR02561 HrpB1_HrpK type III 22.1 5E+02 0.011 23.0 7.6 74 78-152 2-76 (153)
126 PF15469 Sec5: Exocyst complex 21.8 4E+02 0.0087 23.0 7.1 32 87-118 88-119 (182)
127 PF07526 POX: Associated with 21.7 3.9E+02 0.0085 23.0 6.8 16 83-98 73-88 (140)
128 PF14749 Acyl-CoA_ox_N: Acyl-c 21.6 60 0.0013 26.4 1.7 39 103-141 14-52 (125)
129 PRK10747 putative protoheme IX 21.3 2.7E+02 0.0058 27.1 6.4 56 96-151 129-184 (398)
130 PF07304 SRA1: Steroid recepto 21.0 5.6E+02 0.012 22.3 7.9 30 117-146 87-116 (157)
131 PRK11020 hypothetical protein; 20.8 1.4E+02 0.0029 25.4 3.6 33 118-150 12-44 (118)
132 KOG0796 Spliceosome subunit [R 20.7 3.3E+02 0.0071 26.9 6.7 66 81-149 95-160 (319)
133 cd00189 TPR Tetratricopeptide 20.6 2.6E+02 0.0057 18.3 7.3 57 94-151 9-65 (100)
134 PF10475 DUF2450: Protein of u 20.1 3.1E+02 0.0067 25.8 6.4 47 83-129 125-175 (291)
135 PF09613 HrpB1_HrpK: Bacterial 20.0 6.2E+02 0.013 22.4 8.3 72 79-151 3-75 (160)
136 PRK13848 conjugal transfer pro 20.0 1.3E+02 0.0028 24.7 3.3 12 84-95 11-22 (98)
137 PF12297 EVC2_like: Ellis van 20.0 1.9E+02 0.0042 29.6 5.2 47 90-136 276-322 (429)
No 1
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-50 Score=332.59 Aligned_cols=123 Identities=47% Similarity=0.842 Sum_probs=118.0
Q ss_pred ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF 239 (290)
Q Consensus 160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F 239 (290)
.+.|..|.|+|.|.|++++|+|.+++|+|+|+|+|+|+++.+|||++|||.|||+||++++|+|+||||+||+|+||++|
T Consensus 2 ~~~~~~I~V~V~~~yleeQS~P~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y 81 (126)
T COG2967 2 MASSPDIEVQVQPRYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEY 81 (126)
T ss_pred CcccCceEEEEeeEEccccCCcccceEEEEEEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCce
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883 240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD 285 (290)
Q Consensus 240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~ 285 (290)
+|+|+|+|+||.|.|+|+|+|+.. +|+.|+|.||+|+|++|.-
T Consensus 82 ~YtSg~~l~Tp~G~M~GhY~M~~e---~G~~F~v~Ip~F~L~vP~~ 124 (126)
T COG2967 82 QYTSGCPLDTPSGTMQGHYEMIDE---DGETFDVAIPVFRLAVPGL 124 (126)
T ss_pred EEcCCcCccCCcceEEEEEEEecC---CCcEEEeecCceEecCccc
Confidence 999999999999999999999963 3799999999999999963
No 2
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=100.00 E-value=1.7e-49 Score=333.44 Aligned_cols=123 Identities=48% Similarity=0.874 Sum_probs=118.5
Q ss_pred eecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCc
Q 022883 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTS 238 (290)
Q Consensus 159 s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~ 238 (290)
+.++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++
T Consensus 2 ~~~~t~gI~V~V~~~y~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~ 81 (127)
T PRK05461 2 YSAVTYGIEVSVQPRYLEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGES 81 (127)
T ss_pred cccccCCEEEEEEEEECcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCC
Q 022883 239 FEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG 284 (290)
Q Consensus 239 F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~ 284 (290)
|+|+|+|+|+||.|+|+|+|+|+. + .|+.|+|.||+|+|.+|.
T Consensus 82 F~Y~S~~~l~tp~G~M~G~y~~~~--~-~G~~F~v~Ip~F~L~~P~ 124 (127)
T PRK05461 82 FEYTSGAVLETPSGTMQGHYQMVD--E-DGERFEVPIPPFRLAVPR 124 (127)
T ss_pred eEEeCCCCccCCCEEEEEEEEEEe--C-CCCEEEEEccCEEcCCCc
Confidence 999999999999999999999996 3 369999999999999996
No 3
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=100.00 E-value=1.2e-38 Score=253.52 Aligned_cols=88 Identities=57% Similarity=1.070 Sum_probs=79.1
Q ss_pred ecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccccccccCceee
Q 022883 175 IEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRM 254 (290)
Q Consensus 175 ~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~~~L~Tp~G~M 254 (290)
+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|+|+|+|+|+||.|+|
T Consensus 1 ~~e~S~p~~~~y~f~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~M 80 (90)
T PF04379_consen 1 VPEQSDPSQNRYVFAYRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTSGCPLSTPSGSM 80 (90)
T ss_dssp -GGG-BGGGTBEEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEE
T ss_pred CccccCCCCCeEEEEEEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcCCCCcCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEE
Q 022883 255 EGDFEMKH 262 (290)
Q Consensus 255 ~G~y~m~~ 262 (290)
+|+|+|++
T Consensus 81 ~G~y~~~~ 88 (90)
T PF04379_consen 81 EGSYTMVD 88 (90)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999986
No 4
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-36 Score=286.68 Aligned_cols=165 Identities=32% Similarity=0.489 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhh-cC----CCccCccceecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEE
Q 022883 121 FRLRRLMKEAVAEERFEDAARYRDKLKE-IA----PNSLLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRIT 195 (290)
Q Consensus 121 ~~L~~~L~~AI~eEryE~AA~lRDei~e-L~----P~~~~~~~s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~ 195 (290)
++|+++.-.+..+..--....++|.+.+ ++ |+.....+..++|+||+|+|+|+|+|+.|.+..+.|+|+|.|||+
T Consensus 207 heLf~~~pdl~r~~~~~~~f~~q~tl~~W~e~kn~gwl~~~dVh~etTenI~Vtvstfylge~s~~~pp~YwwrY~IRie 286 (386)
T KOG4408|consen 207 HELFDQFPDLARDPAAIPPFVIQDTLTAWQESKNHGWLPIRDVHRETTENIRVTVSTFYLGERSSVHPPVYWWRYCIRIE 286 (386)
T ss_pred hhhhhhhhhhhcCcccCCchhhhHHHHHHHhcCCCCCcChhhCChhhcCCeEEEEEEeeecccccCCCCceEEEEEEEee
Confidence 4555555444444332233344444433 11 333335677899999999999999999999999999999999999
Q ss_pred E-CCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCC-ceEEccccccccCceeeEEEEEEEEeCCCCCeeEEE
Q 022883 196 N-NSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNT-SFEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNV 273 (290)
Q Consensus 196 N-~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe-~F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V 273 (290)
| .....|||..|||+|+..+|.+++|+|+||||++|+|.||+ .|+|+||++|.|+.|+|+|.|.|...+ |..|+|
T Consensus 287 n~l~e~svQLreRhWrI~slng~le~V~G~gVVGk~PiLs~g~paFqYsSc~sl~ttsGhMwGtF~fer~~---G~lfDv 363 (386)
T KOG4408|consen 287 NALPEKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPILSAGRPAFQYSSCVSLQTTSGHMWGTFRFERED---GSLFDV 363 (386)
T ss_pred cCCCCcceEEeEeeEEEEecccchhhccccceeccccccCCCCcceEEeeeeeeccCCccceeeEEEEecC---Cccccc
Confidence 9 78899999999999999999999999999999999999998 999999999999999999999998754 699999
Q ss_pred EecceeeccCCCCCC
Q 022883 274 AIAPFSLSTMGDDSD 288 (290)
Q Consensus 274 ~Ip~F~L~~P~~~~~ 288 (290)
+||||.|++|+++..
T Consensus 364 kip~F~~es~ef~~e 378 (386)
T KOG4408|consen 364 KIPPFSLESPEFRLE 378 (386)
T ss_pred cCCceEeeccccccC
Confidence 999999999988753
No 5
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=99.03 E-value=3.3e-10 Score=99.53 Aligned_cols=67 Identities=15% Similarity=0.345 Sum_probs=60.5
Q ss_pred ccccChHHHHHHHHHHHHHHHhc-------------cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHH
Q 022883 76 RSFLSRSQAYALLKQQMEVAAKT-------------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARY 142 (290)
Q Consensus 76 ~~~~gc~~cye~Lk~qL~~aV~~-------------E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~l 142 (290)
...|||+.||.+|+.+|.+.|.+ .+-+.+..+|++|. .|++.|+.+|+.|+||+||.+
T Consensus 90 ~g~fGCaeCY~tf~~~i~pi~~rvq~g~~~H~GK~P~~~~~~i~~~~~I~---------~L~e~Lq~~i~~EefEeAA~i 160 (176)
T COG3880 90 SGLFGCAECYKTFESQISPIITRVQGGYVEHVGKVPKRIGRKINPKRKII---------ALKEALQDLIEREEFEEAAVI 160 (176)
T ss_pred hcccchHHHHHHHHHHhhHHHHHhhCCceeecCcCcccccccccHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999988 34556777899999 999999999999999999999
Q ss_pred HHHhhhcCC
Q 022883 143 RDKLKEIAP 151 (290)
Q Consensus 143 RDei~eL~P 151 (290)
||+|+.|+.
T Consensus 161 RDqIr~Lk~ 169 (176)
T COG3880 161 RDQIRALKA 169 (176)
T ss_pred HHHHHHHHh
Confidence 999999974
No 6
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.03 E-value=5.3e-06 Score=73.27 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=40.0
Q ss_pred CCccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhcc
Q 022883 74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (290)
Q Consensus 74 ~~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~ 117 (290)
..+.-+.-...+..|++.|+++|++||||+||.+||||++|+++
T Consensus 127 ~~~~~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k 170 (176)
T COG3880 127 RIGRKINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAK 170 (176)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677788899999999999999999999999999999988854
No 7
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=97.79 E-value=3.2e-05 Score=51.80 Aligned_cols=30 Identities=37% Similarity=0.678 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhh
Q 022883 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (290)
Q Consensus 85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l 114 (290)
+..|+.+|..|++.++||+|+.|||+|..|
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l 33 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKAL 33 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 455555566666666666666666665533
No 8
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=97.72 E-value=4.2e-05 Score=51.21 Aligned_cols=30 Identities=47% Similarity=0.654 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 121 ~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
..|...|..|+.+++||+||.|||+|..|+
T Consensus 5 ~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 5 KELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999874
No 9
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.09 E-value=0.093 Score=55.00 Aligned_cols=33 Identities=45% Similarity=0.633 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
+-+..|+.+|++|.++.+||+||++||+|..|+
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~ 645 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELK 645 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999999986
No 10
>PRK07883 hypothetical protein; Validated
Probab=93.47 E-value=0.078 Score=54.72 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=35.0
Q ss_pred HHHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 107 IRDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 107 LRdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+++-+.-|++ .+.+..|..+|++|.++.+||+||++||+|..|+-
T Consensus 393 v~~~~~fL~G~~~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~ 439 (557)
T PRK07883 393 VARARAALTGDDDAVLAALRARIDRLAAAERFEEAARLRDRLAALLR 439 (557)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3444444543 33457899999999999999999999999999863
No 11
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=93.42 E-value=0.088 Score=54.88 Aligned_cols=44 Identities=30% Similarity=0.440 Sum_probs=34.3
Q ss_pred HHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 108 RDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 108 RdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.-+.-|++ .+.+..|..+|++|.++.+||+||.+||+|..|+-
T Consensus 190 ~~~~~fL~G~~~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~ 235 (598)
T PRK00558 190 DEAKLFLSGKTDEVLKELEEKMEEASENLEFERAARYRDQIQALRR 235 (598)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 333444443 34557899999999999999999999999999863
No 12
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.30 E-value=0.11 Score=54.64 Aligned_cols=32 Identities=41% Similarity=0.562 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 119 ~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.+..|..+|++|.++.+||+||.+||+|..|+
T Consensus 624 ~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 624 LIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 44689999999999999999999999999874
No 13
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.95 E-value=0.12 Score=54.46 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
+-++.|+.+|++|.++.+||+||++||+|++|+
T Consensus 623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999664
No 14
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=92.95 E-value=0.12 Score=54.92 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=30.6
Q ss_pred cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.+-+..|..+|++|.++.+||+||++||.|..|+
T Consensus 200 ~~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~ 233 (694)
T PRK14666 200 GELVDALRTEMEAASEALEFERAAVLRDQIRAVE 233 (694)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999976
No 15
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.12 Score=53.55 Aligned_cols=32 Identities=47% Similarity=0.670 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 120 v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.+|..+|++|-++-+||+||+|||+|.+|+.
T Consensus 626 I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~ 657 (663)
T COG0556 626 IKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657 (663)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45888899999999999999999999998864
No 16
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.16 Score=52.70 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=32.5
Q ss_pred cChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 79 LSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 79 ~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
-.....++.|+.+|.+|.+.-+||+||+|||+|.+|+
T Consensus 620 ~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~ 656 (663)
T COG0556 620 KELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELK 656 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3445679999999999999999999999999999544
No 17
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=92.80 E-value=0.13 Score=52.83 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=34.4
Q ss_pred HHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 108 RDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 108 RdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
+.-++-|++ .+.+..|..+|++|.++.+||+||.+||.|..|+
T Consensus 180 ~~~~~fL~G~~~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 180 KKAEEVLKGKIDELIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344444444 4556789999999999999999999999999986
No 18
>PRK07883 hypothetical protein; Validated
Probab=92.39 E-value=0.14 Score=52.95 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
..-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 405 ~~~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 438 (557)
T PRK07883 405 DAVLAALRARIDRLAAAERFEEAARLRDRLAALL 438 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999433
No 19
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=92.36 E-value=0.92 Score=36.16 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=40.1
Q ss_pred cccCCcEEEEEeE-EecC---cccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEe
Q 022883 161 ATTLGIRVQVRSV-YIED---RSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTEN 220 (290)
Q Consensus 161 ~~T~GI~V~V~~~-y~~e---~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~e 220 (290)
..+.+++|+|..+ +... ...|.....+..=.++|+|.++.++.+-.-++.+.|.+|+.-.
T Consensus 7 ~~~~~~~vtV~~v~~~~~~~~~~~~~~g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~ 70 (123)
T PF11611_consen 7 VSVGGIEVTVNSVEKTDGSNEYSKPKEGNKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYD 70 (123)
T ss_dssp EEETTEEEEEEEE-EEE-SS-BEES---SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--
T ss_pred EEECCEEEEEEEEEeecCCccccccCCCCEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEc
Confidence 3468999999988 3322 2345566777889999999999999998889999999988654
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=92.35 E-value=0.16 Score=52.82 Aligned_cols=43 Identities=30% Similarity=0.399 Sum_probs=34.4
Q ss_pred HHHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 108 RDSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 108 RdeIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
..-+.-|++ .+.+..|..+|++|.++.+||+||++||.|..|+
T Consensus 182 ~~~~~fL~g~~~~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 182 EKIELFFNGRPQEVIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444443 4556889999999999999999999999999986
No 21
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=92.30 E-value=0.16 Score=52.76 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHhhhhc--cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 109 DSLRSFEE--EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 109 deIk~l~~--~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.-+.-|++ .+-+..|..+|++|-++.+||+||++||.|..|+
T Consensus 188 ~~~~fL~G~~~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 188 SAKAFLSGNVKEVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33444443 3455789999999999999999999999999975
No 22
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=92.29 E-value=0.14 Score=53.81 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=30.8
Q ss_pred cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+.+..|..+|+.|.++.+||+||++||.|..|+-
T Consensus 202 ~~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~ 236 (624)
T PRK14669 202 SDLARSLRARMEAAALEMQFELAAKYRDLITTVEE 236 (624)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999863
No 23
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=92.29 E-value=0.82 Score=38.94 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=53.6
Q ss_pred cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCC-c-eeecCCC
Q 022883 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGE-Q-PVILPNT 237 (290)
Q Consensus 161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~-q-PvL~PGe 237 (290)
.++++|.|-....=.+.-|...+..|-=+|.|.+.|.++.++.|-.=..+-.+.+|+.-. ..+|=.+ + =.|+||+
T Consensus 22 ~~~d~i~V~At~~~~Gs~sv~~k~~ytktF~V~vaN~s~~~idLsk~Cf~a~~~~gk~f~--ldTVd~~L~~g~lK~g~ 98 (124)
T PF14263_consen 22 SAPDNIAVYATEKSQGSVSVGGKSFYTKTFDVTVANLSDKDIDLSKMCFKAYSPDGKEFK--LDTVDEELTSGTLKPGE 98 (124)
T ss_dssp ---SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-EEE--EEEE-GGGG-SEE-TT-
T ss_pred ccCCCeEEEEEecCCccEeecCccceEEEEEEEEecCCCCccccccchhhhccccCCEEE--ecccchhhhhccccCCC
Confidence 456889999999998888988899999999999999999999999999999999988543 3333222 2 2688887
No 24
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=92.27 E-value=0.14 Score=53.33 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.3
Q ss_pred cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+.+..|...|+.|.++.+||+||++||.|..|+-
T Consensus 176 ~~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~ 210 (574)
T PRK14670 176 SKLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE 210 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999863
No 25
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=92.09 E-value=0.17 Score=52.76 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.+-++.|+++|+.|.++.+||+||++||+|++|+
T Consensus 201 ~~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~ 234 (598)
T PRK00558 201 DEVLKELEEKMEEASENLEFERAARYRDQIQALR 234 (598)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999776
No 26
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=92.08 E-value=0.17 Score=53.65 Aligned_cols=34 Identities=44% Similarity=0.664 Sum_probs=30.5
Q ss_pred cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.+.+..|..+|++|.++.+||+||++||.|..|+
T Consensus 204 ~~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 204 DATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4455789999999999999999999999999985
No 27
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=91.95 E-value=0.18 Score=52.84 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=30.6
Q ss_pred cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.+.+..|..+|++|.++.+||+||++||.|..|+
T Consensus 214 ~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 214 SALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999999975
No 28
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=91.93 E-value=0.19 Score=52.26 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.+..|+..|++|.++.+||+||++||.|..|+-
T Consensus 199 ~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~ 232 (577)
T PRK14668 199 VLADPLRREMEAAAQAQEFERAANLRDRLEAVEA 232 (577)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999999863
No 29
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=91.92 E-value=0.18 Score=52.88 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.-++.|+.+|+.|.+..+||+||++||+|++|+
T Consensus 613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~ 645 (652)
T PRK05298 613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELK 645 (652)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999655
No 30
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=90.79 E-value=0.25 Score=50.84 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.=++.|+.+|+.|.++.+||+||++||+|.+|+
T Consensus 192 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~ 224 (519)
T PRK12306 192 ELIEKLEEEMAEKAKNQQFERALVIRDEINAIE 224 (519)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999887
No 31
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=90.70 E-value=0.26 Score=52.40 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 201 ~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~ 233 (694)
T PRK14666 201 ELVDALRTEMEAASEALEFERAAVLRDQIRAVE 233 (694)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999443
No 32
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=90.14 E-value=1.6 Score=36.45 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhhccCcHHHHHHHHHHHHhhhh---hHHHH-HHHHHhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFEEEEPIFRLRRLMKEAVAEER---FEDAA-RYRDKLKE 148 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~L----RdeIk~l~~~d~v~~L~~~L~~AI~eEr---yE~AA-~lRDei~e 148 (290)
..++.+...|+..++.+--.+|+++ |.||+ +|+.+-++|+.+.. |..|. +|||.+++
T Consensus 14 ~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk---------RL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ 78 (109)
T PHA02571 14 EEVEELLSELQARNEAEAEKKAAKILKKNRREIK---------RLKKHAEEALFDNNKEQYVYAIKKLRDIYKQ 78 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 3488899999999999988999988 88999 99999999999876 56665 77777765
No 33
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=90.05 E-value=0.3 Score=50.91 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 199 ~~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~ 231 (577)
T PRK14668 199 VLADPLRREMEAAAQAQEFERAANLRDRLEAVE 231 (577)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999665
No 34
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=90.00 E-value=0.31 Score=51.19 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
..-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 214 ~~l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~ 247 (621)
T PRK14671 214 SALIRSLTEEMQRAAAELKFEEAAELKDQIESLK 247 (621)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999876
No 35
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=89.99 E-value=0.31 Score=50.67 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 199 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 231 (567)
T PRK14667 199 EVLPELYDKIEEYSQKLMFEKAAVIRDQILALE 231 (567)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999776
No 36
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=89.78 E-value=0.31 Score=50.88 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 120 v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+..|...|++|-.+.+||.||+|||.|..|+.
T Consensus 204 ~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~ 235 (581)
T COG0322 204 LQELEEKMEEASENLDFERAARLRDQIKALEK 235 (581)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999998764
No 37
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=89.65 E-value=0.35 Score=50.43 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 177 ~~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~ 209 (574)
T PRK14670 177 KLLSQIEIKMKEAIQKEDFEAAIKLKETKRSLI 209 (574)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 558899999999999999999999999999777
No 38
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=89.61 E-value=0.36 Score=50.75 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 203 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~ 235 (624)
T PRK14669 203 DLARSLRARMEAAALEMQFELAAKYRDLITTVE 235 (624)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 557899999999999999999999999999776
No 39
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=89.53 E-value=0.43 Score=50.74 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.-++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 205 ~ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~ 237 (691)
T PRK14672 205 ATVARLEKRMKRAVRQEAFEAAARIRDDIQAIR 237 (691)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999666
No 40
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=89.43 E-value=0.37 Score=50.14 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.=++.|+.+|+.|.++.+||+||++||+|++|+
T Consensus 194 ~~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~ 226 (574)
T TIGR00194 194 EVIKELEQKMEKASENLEFEEAARIRDQIAAVR 226 (574)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999877
No 41
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=87.62 E-value=0.58 Score=48.88 Aligned_cols=33 Identities=33% Similarity=0.599 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.-+..|+++|+.|-++.+||.||++||+|.+|+
T Consensus 202 ~v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~ 234 (581)
T COG0322 202 AVLQELEEKMEEASENLDFERAARLRDQIKALE 234 (581)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 558899999999999999999999999999665
No 42
>PF15469 Sec5: Exocyst complex component Sec5
Probab=86.73 E-value=2.3 Score=37.05 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 022883 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (290)
Q Consensus 99 E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL 149 (290)
+.-+++.++|..+.-|+....+..|=..|+++|+.++|+.|...-..++.+
T Consensus 65 ~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 65 ERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999998666555554
No 43
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=86.25 E-value=0.84 Score=46.74 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhhhc-cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~-~d~v~~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
+-.+.+.=+.||++|+|.-|-+++-.|+.|+. .+.+.+|...=..||++|+|..|--+.|+|.+
T Consensus 173 IgaidenKqeAVakEdfdlAKkaklAiaDLkKsgeeleelEndKgcAVadEDfdlAkdkkdeiea 237 (666)
T KOG4825|consen 173 IGAIDENKQEAVAKEDFDLAKKAKLAIADLKKSGEELEELENDKGCAVADEDFDLAKDKKDEIEA 237 (666)
T ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHH
Confidence 55677777899999999999999999998874 44556777777789999999999988888776
No 44
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=85.05 E-value=3.6 Score=34.39 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=62.0
Q ss_pred CccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh------------------ccCcHHHHHHHHHHHHhhhhh
Q 022883 75 ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE------------------EEEPIFRLRRLMKEAVAEERF 136 (290)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~------------------~~d~v~~L~~~L~~AI~eEry 136 (290)
....-||......+..||+-|=+.++-...+.|...+.+++ .+..|.+....|++|...++.
T Consensus 16 ~~~~~gC~~K~~~Ie~qI~~Ak~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~ 95 (115)
T PF06476_consen 16 AAALTGCEAKEQAIEKQIEYAKAHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS 95 (115)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34588999999999999999999988888888877666664 345677888899999999999
Q ss_pred HHHHHHHHHhhh
Q 022883 137 EDAARYRDKLKE 148 (290)
Q Consensus 137 E~AA~lRDei~e 148 (290)
++.++.++.|.+
T Consensus 96 ~KI~K~~~KL~e 107 (115)
T PF06476_consen 96 DKIAKRQKKLAE 107 (115)
T ss_pred HHHHHHHHHHHH
Confidence 999988888765
No 45
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=80.74 E-value=9.2 Score=28.87 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
..-.++++|+.+...++-.+-..|+.+|+ ..+..+...|..++...+|+.|+.+-.+++
T Consensus 9 e~mE~rE~le~~~~~~~~~~L~~l~~~~~-----~~~~~~~~~l~~~f~~~d~~~A~~~~~kLk 67 (78)
T PF07743_consen 9 EQMELREELEEAQNSDDEAELEELKKEIE-----ERIKELIKELAEAFDAKDWEEAKEALRKLK 67 (78)
T ss_dssp HHHHHHHHHHHHCCCTSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 45567788887776555566666666666 345588889999999999999997665554
No 46
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=75.43 E-value=22 Score=27.74 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=39.1
Q ss_pred EEEEEEEECCCCcEEEeece-----EEEEeCCCCEEeeeeCccc----CCceeecCCCceEEccccccccCceeeEEEEE
Q 022883 189 AYRVRITNNSERPVQLLRRH-----WIITDANGKTENILGVGVI----GEQPVILPNTSFEYSSACPLSTPSGRMEGDFE 259 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRh-----W~ItD~~G~~~eV~G~GVV----G~qPvL~PGe~F~Y~S~~~L~Tp~G~M~G~y~ 259 (290)
...++|.|.++.++.|.-+. ..|.|.+|+.---...|=. =..=+|.||++-+|.=-.++.... .|.|+
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~---~G~Y~ 79 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLS---PGEYT 79 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-------SEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCC---CceEE
Confidence 46789999999999987553 6677888775444333321 114578999999988655555432 67887
Q ss_pred EE
Q 022883 260 MK 261 (290)
Q Consensus 260 m~ 261 (290)
.+
T Consensus 80 ~~ 81 (82)
T PF12690_consen 80 LE 81 (82)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 47
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=73.39 E-value=14 Score=25.83 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=42.4
Q ss_pred HHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 95 aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+++.++|++|.++-.++-.....++-..+ ..-+-.++..+|++|..+=..+....|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARL-LLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHH-HHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 57889999999998887766655444333 455667888999999999888888877
No 48
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=70.43 E-value=15 Score=32.13 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhc-------cchHHHHHHHHHHhhhhccCcHHHHHHHHHHH
Q 022883 83 QAYALLKQQMEVAAKT-------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEA 130 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~-------E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~A 130 (290)
..+..|+.++.++-+. .+|.+.+|+++++. +|.++|++.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~---------kl~~el~~~ 85 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLD---------KLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 4455555555555544 89999999999999 666666543
No 49
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=70.28 E-value=4 Score=34.90 Aligned_cols=70 Identities=17% Similarity=0.410 Sum_probs=47.0
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEeCCCCEEe--------------e-ee-CcccCCceeecCCCce--E----------
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITDANGKTEN--------------I-LG-VGVIGEQPVILPNTSF--E---------- 240 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~e--------------V-~G-~GVVG~qPvL~PGe~F--~---------- 240 (290)
..+|++.|.+.-+-..+...|+|+.. +..+. | .+ +=|+...|+|.|||+- +
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl~k~-~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF~~~~l~~g~ 104 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVLAKS-ADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTFDVSKLSAGE 104 (125)
T ss_pred EEEEEEecCCcCchhccCccEEEecc-ccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEEECCCCCCCC
Confidence 46899999999999999999999854 33332 2 23 3678888899999732 2
Q ss_pred -EccccccccCceeeEEEEE
Q 022883 241 -YSSACPLSTPSGRMEGDFE 259 (290)
Q Consensus 241 -Y~S~~~L~Tp~G~M~G~y~ 259 (290)
|.=.|+.+.=+..|+|.++
T Consensus 105 ~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 105 DYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred cceEEEcCCCcHHhceEEEe
Confidence 2223444444456777654
No 50
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=69.66 E-value=29 Score=32.30 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=40.6
Q ss_pred eEEEEEEEEEECCCCcEEEeec------eEEEEeCCCCEEeeeeCcc-----cCCceeecCCCceEEccccccc
Q 022883 186 YFFAYRVRITNNSERPVQLLRR------HWIITDANGKTENILGVGV-----IGEQPVILPNTSFEYSSACPLS 248 (290)
Q Consensus 186 Y~FaY~IrI~N~s~~~VQLlsR------hW~ItD~~G~~~eV~G~GV-----VG~qPvL~PGe~F~Y~S~~~L~ 248 (290)
--|.=.+.|+|.++.++.|-+= .|...|.+.......+.+. .+..|+|.||+..+|-=+....
T Consensus 135 ~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~ 208 (249)
T PF06159_consen 135 ERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPK 208 (249)
T ss_pred eeEEEEEEEEecCCCceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEEC
Confidence 3456789999999888777554 4666666633322222232 3467999999988876444333
No 51
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.19 E-value=18 Score=35.08 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 022883 83 QAYALLKQQMEVAAKT 98 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~ 98 (290)
.|+..||.+|.+.+.+
T Consensus 68 V~iRHLkakLkes~~~ 83 (305)
T PF15290_consen 68 VCIRHLKAKLKESENR 83 (305)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5777888888777665
No 52
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=65.11 E-value=22 Score=33.24 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhh----hhccC------c-------HHHHHHHHHHH-H-hhhhhHHHHHHH
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRS----FEEEE------P-------IFRLRRLMKEA-V-AEERFEDAARYR 143 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~----l~~~d------~-------v~~L~~~L~~A-I-~eEryE~AA~lR 143 (290)
+.++.+-+++-+++++++||+|-.+-..+.. ....+ . +.+++..|..+ + ++|+...|+++|
T Consensus 3 ~eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~~~~~~e~~~~at~~R 82 (232)
T PF09577_consen 3 KELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSVSMSEEEKIRAATQFR 82 (232)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4678899999999999999999988444332 22211 1 12333333333 2 566789999999
Q ss_pred HHhhhcC
Q 022883 144 DKLKEIA 150 (290)
Q Consensus 144 Dei~eL~ 150 (290)
-.+.+|.
T Consensus 83 LavDAl~ 89 (232)
T PF09577_consen 83 LAVDALT 89 (232)
T ss_pred HHHHHhc
Confidence 9999986
No 53
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=64.90 E-value=26 Score=31.15 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
.....++++|+.+-...+-++=..|+++|+ ..+..+...|.+++..++|+.|+.+-.+++
T Consensus 95 me~ME~rE~lee~~~~~d~~~L~~l~~~v~-----~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~ 154 (173)
T PRK01773 95 MQQMEWREQLEEIEQQQDEDALTAFSKEIK-----QEQQAILTELSTALNSQQWQQASQINDRLR 154 (173)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 356668888887755566555556666666 233467788899999999999986554443
No 54
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=64.11 E-value=33 Score=29.84 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 81 c~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
.......++++|+.+-...+.++=..|+.+++ ..+..+-..|.+|+..++|+.|+.+-.++
T Consensus 79 fLme~Me~rE~lee~~~~~d~~~L~~l~~~~~-----~~~~~~~~~l~~~~~~~d~~~A~~~~~kL 139 (157)
T TIGR00714 79 FLMEQLELREELDEIEQAKDEARLESFIKRVK-----KMFQTRHQLLVEQLDNQTWAAAADYTRKL 139 (157)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34567777888877766665444445555555 23346778888999999999998654443
No 55
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=63.36 E-value=6.5 Score=35.04 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhc
Q 022883 85 YALLKQQMEVAAKT 98 (290)
Q Consensus 85 ye~Lk~qL~~aV~~ 98 (290)
++.|..+|++||++
T Consensus 2 LeD~EsklN~AIER 15 (166)
T PF04880_consen 2 LEDFESKLNQAIER 15 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999987
No 56
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=63.09 E-value=68 Score=24.74 Aligned_cols=74 Identities=19% Similarity=0.388 Sum_probs=46.3
Q ss_pred EEEEEEEEEECCCCcEEEeeceEEEEeCC--CCEEeeee-CcccCCceeecCCCceEEccccccccCceeeEEEEEEEEe
Q 022883 187 FFAYRVRITNNSERPVQLLRRHWIITDAN--GKTENILG-VGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHV 263 (290)
Q Consensus 187 ~FaY~IrI~N~s~~~VQLlsRhW~ItD~~--G~~~eV~G-~GVVG~qPvL~PGe~F~Y~S~~~L~Tp~G~M~G~y~m~~~ 263 (290)
.+...|+|.|.+..++ +|.|.... ...-.|.- .| .|.||++.+..=...-..+.|..++...+..
T Consensus 21 ~~~~~v~l~N~s~~p~-----~f~v~~~~~~~~~~~v~~~~g------~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~- 88 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPA-----RFRVRQPESLSSFFSVEPPSG------FLAPGESVELEVTFSPTKPLGDYEGSLVITT- 88 (102)
T ss_pred EEEEEEEEEECCCCCE-----EEEEEeCCcCCCCEEEECCCC------EECCCCEEEEEEEEEeCCCCceEEEEEEEEE-
Confidence 4578999999998775 34443322 23333432 33 5999997666533333356789999888764
Q ss_pred CCCCCeeEEEEe
Q 022883 264 DRVGSQTFNVAI 275 (290)
Q Consensus 264 d~~gg~~F~V~I 275 (290)
+ +..|.+.|
T Consensus 89 e---~~~~~i~v 97 (102)
T PF14874_consen 89 E---GGSFEIPV 97 (102)
T ss_pred C---CeEEEEEE
Confidence 2 35777765
No 57
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=61.05 E-value=13 Score=29.03 Aligned_cols=48 Identities=27% Similarity=0.440 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhccchHHHHHH-HHHHhhhhccCc-HHHHHHHHHHHHhhh
Q 022883 87 LLKQQMEVAAKTEDYKEAARI-RDSLRSFEEEEP-IFRLRRLMKEAVAEE 134 (290)
Q Consensus 87 ~Lk~qL~~aV~~E~ye~AA~L-RdeIk~l~~~d~-v~~L~~~L~~AI~eE 134 (290)
.+..-++..|+.+.|..|..+ |+.|+.|++.+. +..|+..|.++++..
T Consensus 12 ~~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~e~~~~~Lr~~l~~g~~sG 61 (80)
T PF03693_consen 12 ELEAFIEEQVASGRYSSASEVVREALRLLEEREAKLEALREALQEGLESG 61 (80)
T ss_dssp HHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455557777888999988775 788887765432 344555555555443
No 58
>PRK10404 hypothetical protein; Provisional
Probab=60.62 E-value=55 Score=26.75 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhc---cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhh--hhhHHHHHHHHHhhhcCC
Q 022883 83 QAYALLKQQMEVAAKT---EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAE--ERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~---E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~e--EryE~AA~lRDei~eL~P 151 (290)
..+..|-..++.+++. +.-+++..||++++ ..+..+++.|..+-.. ++..+|+.--|....=.|
T Consensus 12 ~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~-----~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 12 DDLTLLSETLEEVLRSSGDPADQKYVELKARAE-----KALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566666666666655 56677788888887 4556677666665554 556666655555544456
No 59
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=58.71 E-value=20 Score=27.16 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhccchHHHHHH-HHHHhhhhccCc-HHHHHHHHHHHH
Q 022883 87 LLKQQMEVAAKTEDYKEAARI-RDSLRSFEEEEP-IFRLRRLMKEAV 131 (290)
Q Consensus 87 ~Lk~qL~~aV~~E~ye~AA~L-RdeIk~l~~~d~-v~~L~~~L~~AI 131 (290)
.+..-++..|+.+.|..+-.+ |+-|+.++..+. +..|++.+..++
T Consensus 9 ~~~~~i~~~V~sG~Y~s~SEVir~aLR~le~~e~~~~~Lr~~i~~g~ 55 (69)
T TIGR02606 9 HLESFIRSQVQSGRYGSASEVVRAALRLLEERETKLQALRDAIEEGE 55 (69)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888999988765 777776654432 334444444333
No 60
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=58.19 E-value=32 Score=26.32 Aligned_cols=50 Identities=34% Similarity=0.608 Sum_probs=30.3
Q ss_pred CeeEEEEEEEEEECCCCcEEEe--------eceEEEEeCCCCEEeeeeCcccC---CceeecCCCceEE
Q 022883 184 GQYFFAYRVRITNNSERPVQLL--------RRHWIITDANGKTENILGVGVIG---EQPVILPNTSFEY 241 (290)
Q Consensus 184 ~~Y~FaY~IrI~N~s~~~VQLl--------sRhW~ItD~~G~~~eV~G~GVVG---~qPvL~PGe~F~Y 241 (290)
+.-+..|.++|.|.+..+|.-+ .--|-+.- ...+... =.+.|.||++|.|
T Consensus 15 g~~y~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~--------~~~~~y~lPs~~~~i~pg~s~~F 75 (80)
T PF09478_consen 15 GQTYTQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDK--------VSGNTYTLPSYQPTIKPGQSFTF 75 (80)
T ss_pred CEEEEEEEEEEEECCCCeEEEEEEEECccchhheeEEe--------ccCCEEECCccccccCCCCEEEE
Confidence 3357899999999998776432 22233332 1122222 2568999997665
No 61
>PRK11020 hypothetical protein; Provisional
Probab=57.94 E-value=40 Score=28.55 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhcc
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~ 117 (290)
.+-++.++.+|..|..++|-+.-+++.+||..|+.+
T Consensus 11 ~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~ 46 (118)
T PRK11020 11 SDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAE 46 (118)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999966643
No 62
>PF15058 Speriolin_N: Speriolin N terminus
Probab=56.77 E-value=19 Score=32.98 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhcc
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~ 117 (290)
..|+-|++||+.+| .+.++||++.+-|+++
T Consensus 5 ~~yeGlrhqierLv-----~ENeeLKKlVrLirEN 34 (200)
T PF15058_consen 5 TNYEGLRHQIERLV-----RENEELKKLVRLIREN 34 (200)
T ss_pred cchHHHHHHHHHHH-----hhhHHHHHHHHHHHHH
Confidence 36999999999999 5667888888877777
No 63
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=56.59 E-value=50 Score=23.33 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=42.8
Q ss_pred HHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 94 ~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
-++++++|++|.+.-+++-.+...++.......+ -....++|++|...=+.+-++.|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~-~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRAR-CLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHH-HHHHhccHHHHHHHHHHHHHHCC
Confidence 4578899999999999888887776654443322 34567789999888888878877
No 64
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=56.09 E-value=51 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhh-hhhHHHHHHHHHhh
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAE-ERFEDAARYRDKLK 147 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~e-EryE~AA~lRDei~ 147 (290)
+...++++|+.+-...+-++-..|+.+++ ..+..+...|.+++.. .+|+.|+..-.+++
T Consensus 99 e~mE~rE~lee~~~~~d~~~L~~l~~e~~-----~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~ 158 (176)
T PRK03578 99 QQMEWREAIEDARAARDVDALDALLAELR-----DERRERYAELGALLDSRGDDQAAAEAVRQLM 158 (176)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 55667888887655455444444555554 3344777888888877 78998886554443
No 65
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=55.95 E-value=48 Score=29.24 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhccchHH-HHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKE-AARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~-AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
.+...++++|+.+-...+-++ -..|+.+|+ ..+..+...|.+++..++|+.|+.+-.+++
T Consensus 93 me~me~rE~le~~~~~~d~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lk 153 (171)
T PRK05014 93 MEQMELREELEDIEQSKDPEAALESFIKRVK-----KMFKTRLQQMVEQLDNEAWDAAADTVRKLK 153 (171)
T ss_pred HHHHHHHHHHHhhccccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 345566666666654444333 334444444 233467778888999999999986655543
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=55.55 E-value=67 Score=22.28 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=39.1
Q ss_pred HHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHH-HHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 93 EVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLM-KEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 93 ~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L-~~AI~eEryE~AA~lRDei~eL~P 151 (290)
..+++.++|++|.++=+++......++ .+.-.| .-.....+|++|..+=+++.++.|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNP--EAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHH--HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999998777775553322 222222 334577889999998888888887
No 67
>PF10849 DUF2654: Protein of unknown function (DUF2654); InterPro: IPR022558 This entry is represented by Bacteriophage T4, a-gt.4; it is a family of uncharacterised viral proteins.
Probab=53.42 E-value=36 Score=26.40 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=26.3
Q ss_pred HHHHhhhhccCcHHHHHHHHHHHHhhhhh---HHHH-HHHHHhhh
Q 022883 108 RDSLRSFEEEEPIFRLRRLMKEAVAEERF---EDAA-RYRDKLKE 148 (290)
Q Consensus 108 RdeIk~l~~~d~v~~L~~~L~~AI~eEry---E~AA-~lRDei~e 148 (290)
++||+ +|+.+-++|+.+..+ ..|. +|||-.++
T Consensus 13 ~rEI~---------RL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQ 48 (70)
T PF10849_consen 13 RREIK---------RLKKHAEEALIENNKEGYVYAIKKLRDIYKQ 48 (70)
T ss_pred HHHHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 78888 999999999998775 5565 78888777
No 68
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=51.35 E-value=19 Score=27.50 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccchHHHHHH
Q 022883 86 ALLKQQMEVAAKTEDYKEAARI 107 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~L 107 (290)
+.+.++.++++.+++|++||++
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~ 28 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKV 28 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 4578889999999999999997
No 69
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.21 E-value=64 Score=32.72 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 022883 85 YALLKQQMEVA 95 (290)
Q Consensus 85 ye~Lk~qL~~a 95 (290)
++.+.++|+++
T Consensus 262 l~aileeL~eI 272 (455)
T KOG3850|consen 262 LDAILEELREI 272 (455)
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 70
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.37 E-value=15 Score=32.01 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 98 TEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 98 ~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
....++-.++|.||. +|++++..--..++|-+.|+++.++.+++
T Consensus 36 ~~~~~~~~~l~~Ei~---------~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~ 79 (161)
T PF04420_consen 36 SKSSKEQRQLRKEIL---------QLKRELNAISAQDEFAKWAKLNRKLDKLE 79 (161)
T ss_dssp -HHHHHHHHHHHHHH---------HHHHHHTTS-TTTSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH---------HHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 467777888888888 88888877778888999998888877754
No 71
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.38 E-value=44 Score=32.61 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhcc
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~ 117 (290)
+.-..|.+.+++||+.+|.++|++|-||-|+|.-.
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 56778999999999999999999999999977765
No 72
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=43.76 E-value=1e+02 Score=29.09 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=52.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHhhhhccCc------HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 89 KQQMEVAAKTEDYKEAARIRDSLRSFEEEEP------IFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 89 k~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~------v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
++-+++.++.++++.|+.+--=+..++..+. ...+-+.|+.|+++++|+=|..|-.-|+.|.|
T Consensus 183 ~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 183 RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDP 251 (258)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 5678889999999999998666666665554 46666889999999999999999999999988
No 73
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.54 E-value=51 Score=31.07 Aligned_cols=38 Identities=11% Similarity=0.254 Sum_probs=29.5
Q ss_pred hhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 022883 112 RSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (290)
Q Consensus 112 k~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL 149 (290)
+.|+.-..+.+....|+..+.+++|..|..+..+...+
T Consensus 119 ~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 119 EKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33344455678888999999999999999888887664
No 74
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=42.40 E-value=1.1e+02 Score=29.63 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=31.7
Q ss_pred hccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC
Q 022883 97 KTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (290)
Q Consensus 97 ~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P~ 152 (290)
+.++|++|...-++...+...++...++.. .-....++|++|...=.+..+|.|.
T Consensus 48 ~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg-~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 48 KLGNFTEAVADANKAIELDPSLAKAYLRKG-TACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 336666666665555555544443333221 2334556778777777777777774
No 75
>PF00932 LTD: Lamin Tail Domain; InterPro: IPR001322 Intermediate filaments (IF) are primordial components of the cytoskeleton and the nuclear envelope []. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups, type I: acidic cytokeratins, type II: basic cytokeratins, type III: vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin, type IV: neurofilaments L, H and M, alpha-internexin and nestin, and type V: nuclear lamins A, B1, B2 and C. The lamins are components of the nuclear lamina, a fibrous layer on the nucleoplasmic side of the inner nuclear membrane that may provide a framework for the nuclear envelope and may interact with chromatin. All IF proteins are structurally similar in that they consist of a central rod domain arranged in coiled-coil alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. The C-terminal domain has been charcterised for the lamins.; PDB: 3UMN_A 2KPW_A 3JT0_A 2LLL_A 1UFG_A 3GEF_D 1IFR_A 1IVT_A.
Probab=40.67 E-value=26 Score=27.81 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=24.9
Q ss_pred EEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccc
Q 022883 191 RVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSA 244 (290)
Q Consensus 191 ~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~ 244 (290)
.|.|.|.++.+|.|-. |.|.|..+. ...-...+|.||+.+.-.+.
T Consensus 27 ~VEl~N~~~~~vdL~g--w~L~~~~~~-------~~~~~~~~l~pg~~~~v~~~ 71 (116)
T PF00932_consen 27 WVELYNPGDSTVDLSG--WKLVDSNNT-------YTFPPGTTLAPGEYVVVWTG 71 (116)
T ss_dssp EEEEEE-SSS-EEGTT---EEEEEEEE-------EE--TT-EE-TTEEEEEEEC
T ss_pred EEEEEECCCCcEeecc--EEEEECCcc-------EEccCCcCcCCCCEEEEEEC
Confidence 3899999999999975 999987222 22333344557776544433
No 76
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=40.19 E-value=93 Score=27.33 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 121 FRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 121 ~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
..+...|.+|+...+|+.|+.+-.+++
T Consensus 123 ~~~~~~l~~~f~~~d~~~A~~~~~~L~ 149 (166)
T PRK01356 123 KNEIDSLKQAFEEQNLSDATIKTSKLK 149 (166)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 466678889999999999987665544
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=79 Score=33.75 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
+.|=.+|+....+++|++|++--++|...- .|+...++-.+=..|..++|++|-.+...-..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~ 74 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA 74 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch
Confidence 455567788889999999999999999665 67888999999999999999999966655443
No 78
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=39.04 E-value=1.4e+02 Score=24.22 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh-h-------------ccCcHHHHHHHHHHHHhhhhhHHHH
Q 022883 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF-E-------------EEEPIFRLRRLMKEAVAEERFEDAA 140 (290)
Q Consensus 80 gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l-~-------------~~d~v~~L~~~L~~AI~eEryE~AA 140 (290)
+..+.+...=.+++++|+++++++|.+.-+++... + +=|.+..-..+|+.+|+.++..++.
T Consensus 23 ~~~~~i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l 97 (121)
T PF14276_consen 23 NSTDSIEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESL 97 (121)
T ss_pred hHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44567777778889999999999999885555432 1 2233445567888899988865554
No 79
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=38.74 E-value=90 Score=27.12 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=41.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHhhhhccCcHHH-----HHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 90 QQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFR-----LRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 90 ~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~-----L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+=+.++++++|++|++ +++.|+..-|-.. -.+....-.++.+|++|+.--+.+.+|-|
T Consensus 15 ~~a~~~l~~~~Y~~A~~---~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIK---QLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHhCCHHHHHH---HHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44567888999999976 4555554444311 11333455788999999999999999988
No 80
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.67 E-value=50 Score=35.79 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=36.2
Q ss_pred HHHHHHhccchHHHHHHHHHHhhhh----------c-------cCcH---HHHHHHHHHHHhhhhhHHHHHHHHH
Q 022883 91 QMEVAAKTEDYKEAARIRDSLRSFE----------E-------EEPI---FRLRRLMKEAVAEERFEDAARYRDK 145 (290)
Q Consensus 91 qL~~aV~~E~ye~AA~LRdeIk~l~----------~-------~d~v---~~L~~~L~~AI~eEryE~AA~lRDe 145 (290)
-++.|++.||||+||..-.++..|- . .||+ ++....| ..|..++|-+|++=+|.
T Consensus 136 gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~L-~~l~~~~f~eA~r~~D~ 209 (773)
T KOG0412|consen 136 GVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKERL-SKLFKERFTEAVRKQDL 209 (773)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccH
Confidence 4567888899999999866555442 1 2232 3344444 45777889999988876
No 81
>COG3241 Azurin [Energy production and conversion]
Probab=36.95 E-value=32 Score=29.82 Aligned_cols=73 Identities=18% Similarity=0.452 Sum_probs=50.9
Q ss_pred EEEEEEEEECCCCcEEEeeceEEEEeCCCCEEee--eeC--------------cccCCceeecCCC-------------c
Q 022883 188 FAYRVRITNNSERPVQLLRRHWIITDANGKTENI--LGV--------------GVIGEQPVILPNT-------------S 238 (290)
Q Consensus 188 FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV--~G~--------------GVVG~qPvL~PGe-------------~ 238 (290)
=.++|++.-.+..+-..+...|.++... .++-| .|. -||-..-+|--|| -
T Consensus 49 k~ftitL~HtG~~pk~vMGHNwVltk~~-DMqgV~~dG~~a~ld~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g 127 (151)
T COG3241 49 KEFTITLKHTGTQPKRVMGHNWVLTKTE-DMQGVFKDGVGAALDTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADG 127 (151)
T ss_pred eEEEEEeecCCCCCccccccceEEeech-hhhHHHHhhhhhhhccccCCCCCcceEEEeeeecCCccceEecCHHHhcCC
Confidence 3578999999999999999999998543 12222 222 2454455555554 2
Q ss_pred eEEccccccccCceeeEEEEEEE
Q 022883 239 FEYSSACPLSTPSGRMEGDFEMK 261 (290)
Q Consensus 239 F~Y~S~~~L~Tp~G~M~G~y~m~ 261 (290)
-+|.=.|..+.-+..|+|..+++
T Consensus 128 ~~Y~FfCtFPGH~ALMkGtltl~ 150 (151)
T COG3241 128 VEYKFFCTFPGHGALMKGTLTLV 150 (151)
T ss_pred ceEEEEEecCCcHHhhcceeeec
Confidence 26777888888888999988874
No 82
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=36.81 E-value=1.5e+02 Score=20.84 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
++..++.-|.+|-+..+|++.+.|..-++
T Consensus 4 Qi~~I~~~I~qAk~~~r~dEV~~L~~NL~ 32 (42)
T PF11464_consen 4 QINIIESYIKQAKAARRFDEVATLEENLR 32 (42)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45555666666666666666666666665
No 83
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=36.09 E-value=1.4e+02 Score=26.46 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhh-hHHHHHHHHHh
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEER-FEDAARYRDKL 146 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEr-yE~AA~lRDei 146 (290)
..-.++++|+.+-..++-++=+.++.+|+.. ...|...+..++..+. ++.|+.+-.++
T Consensus 96 e~me~rE~le~~~~~~d~~~l~~~~~~i~~~-----~~~l~~~~~~~~~~~~~~~~A~~~v~kl 154 (173)
T PRK00294 96 QQMQLREELEELQDEADLAGVATFKRRLKAA-----QDELNESFAACWDDAARREEAERLMRRM 154 (173)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4555566666655554444434445555522 2244455555555444 78888655443
No 84
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=35.84 E-value=1.1e+02 Score=22.39 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhc-cCcHHHHHHHHHHHHhhhh--hHHHHHHHHHhhhc
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEER--FEDAARYRDKLKEI 149 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~-~d~v~~L~~~L~~AI~eEr--yE~AA~lRDei~eL 149 (290)
.-++.|+..|.......+ .+..+++++..++. .+.|.+....+...+..-. ..+...+.--+..|
T Consensus 27 ~~W~~~~~~~~~~f~~~~--~~~~~~~~l~~l~Q~~esv~~y~~rf~~l~~~~~~~~~e~~~v~~f~~GL 94 (96)
T PF03732_consen 27 ITWEEFKDAFRKRFFPPD--RKEQARQELNSLRQGNESVREYVNRFRELARRAPPPMDEEMLVERFIRGL 94 (96)
T ss_pred CCHHHHHHHHHHHHhhhh--ccccchhhhhhhhccCCcHHHHHHHHHHHHHHCCCCcCHHHHHHHHHHCC
Confidence 357888888887777664 34455688888887 7777666666655554444 33333333333333
No 85
>PF12137 RapA_C: RNA polymerase recycling family C-terminal; InterPro: IPR022737 This domain is found in bacteria. This domain is about 360 amino acids in length. This domain is found associated with PF00271 from PFAM, PF00176 from PFAM. The function of this domain is not known, but structurally it forms an alpha-beta fold in nature with a central beta-sheet flanked by helices and loops, the beta-sheet being mainly antiparallel and flanked by four alpha helices, among which the two longer helices exhibit a coiled-coil arrangement. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3DMQ_A.
Probab=35.69 E-value=1.2e+02 Score=30.31 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhh----------hHHHHHHHHHhhhcCC
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEER----------FEDAARYRDKLKEIAP 151 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEr----------yE~AA~lRDei~eL~P 151 (290)
.=|+.|+.+|.+++...+.+....|-.+-+ .+...|+..++++| -+.|..|.+.|.+..-
T Consensus 38 ~v~~~f~~~L~~~l~~~~~~~~~~Li~~t~---------~~~~~L~~~Le~GRDrLLElnS~~~~~A~~L~~~I~~~d~ 107 (362)
T PF12137_consen 38 AVYEQFGDELEDLLAQPDREALDALIAETR---------ALRQQLKAQLEQGRDRLLELNSCRPERAEELIEAIEEEDN 107 (362)
T ss_dssp HHHHHHHHHHHHHHH----TTHHHHHHHHH---------HHHHHHHHHHHTT--TTHHHHTT--HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHH---------HHHHHHHHHHHhCcHHHHHHhcCCcHHHHHHHHHHHHhcC
Confidence 459999999999998765555555555555 66666777777766 4788888888888763
No 86
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.68 E-value=76 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=25.8
Q ss_pred hccchHHHHHHHHHHhhhh-ccCcHHHHHHHHHHHHhhh
Q 022883 97 KTEDYKEAARIRDSLRSFE-EEEPIFRLRRLMKEAVAEE 134 (290)
Q Consensus 97 ~~E~ye~AA~LRdeIk~l~-~~d~v~~L~~~L~~AI~eE 134 (290)
+.++|++|.+.-+.+-+++ .+.+...|+..+++.|..|
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence 4588999988888888777 4555566776666666554
No 87
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=35.44 E-value=2e+02 Score=27.18 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhh-ccCc---------HHHHHHHHHHHH------hhhhhHHHHHH
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFE-EEEP---------IFRLRRLMKEAV------AEERFEDAARY 142 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~L----RdeIk~l~-~~d~---------v~~L~~~L~~AI------~eEryE~AA~l 142 (290)
++++.+.++.-+++++++||+|.++ .|+-.... +.++ |....+...+|+ ++|+...|+++
T Consensus 3 ~eL~~lsD~~LQl~K~~~yeeAkqvL~yFs~~F~~~~~~~~~~~t~~elR~iT~~~e~a~~al~~~~~~~~eki~~~t~f 82 (233)
T TIGR02878 3 EELNDLSDQVLQLTKQARYEEAKQVLEYFSKQFVSAGKEKDPMLTMDQLRTITLTYERAVQALTATDMSDDEKIRAVTAF 82 (233)
T ss_pred hhHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccccCcccCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4678888999999999999999998 33333333 2222 122233334444 34678899999
Q ss_pred HHHhhhcC
Q 022883 143 RDKLKEIA 150 (290)
Q Consensus 143 RDei~eL~ 150 (290)
|-.+.++.
T Consensus 83 RLavDA~~ 90 (233)
T TIGR02878 83 RLAVDAIV 90 (233)
T ss_pred HHHHHHhc
Confidence 99999875
No 88
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.12 E-value=74 Score=34.56 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 124 RRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 124 ~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
...+..|++.|+||.||...-++-.|.|
T Consensus 134 ~~gv~~Al~seDyE~AA~~IhRflslD~ 161 (773)
T KOG0412|consen 134 IEGVDTALESEDYEKAATHIHRFLSLDQ 161 (773)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCH
Confidence 3456789999999999998888777654
No 89
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=34.71 E-value=2e+02 Score=25.22 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=43.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022883 88 LKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDK 145 (290)
Q Consensus 88 Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDe 145 (290)
...+|. ++++.....+...|++|.+|-.......++...+..|.++.+-+|-.+-..
T Consensus 7 a~~Rl~-~l~~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~ 63 (165)
T PF03398_consen 7 AISRLK-LLQNKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILEL 63 (165)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443 335577788888999999999999999999999999999998887754443
No 90
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=33.83 E-value=2.6e+02 Score=23.80 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=51.2
Q ss_pred EEEEEECCCC-c-----EEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccccccccCceeeEEEEEEEEeC
Q 022883 191 RVRITNNSER-P-----VQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVD 264 (290)
Q Consensus 191 ~IrI~N~s~~-~-----VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~~~L~Tp~G~M~G~y~m~~~d 264 (290)
.|+|.|.... + .+|..-.|. +.+.+-.++.=+-| ...++.||..+...||=.-.+|.|+ +|+|.+.+
T Consensus 5 ~i~I~n~~~~~~l~i~Na~L~~GKfy--~~~~kd~eis~~~v--~~~~i~~~~~~~i~scGr~~~~sGT-EGsfdl~d-- 77 (131)
T PF06355_consen 5 SIHIVNNLGSGDLKIKNAQLSWGKFY--RDGNKDDEISPDDV--NGIVIPPGGSYSICSCGREGSPSGT-EGSFDLYD-- 77 (131)
T ss_pred EEEEEeCCCCccEEEEccEeccCccc--cCCCcCCEeCcccc--CceEecCCCeEEEEEecCCCCCcCc-eEEEEEEe--
Confidence 4677765433 2 344444454 22233344443333 2357899999999999888888875 89998873
Q ss_pred CCCCeeEEEEecceeeccCCCC
Q 022883 265 RVGSQTFNVAIAPFSLSTMGDD 286 (290)
Q Consensus 265 ~~gg~~F~V~Ip~F~L~~P~~~ 286 (290)
+ +..|..+....|...
T Consensus 78 --g----~~kI~~lyWd~P~~~ 93 (131)
T PF06355_consen 78 --G----DTKICTLYWDCPWGS 93 (131)
T ss_pred --C----CEEEEEEEEeCCCCC
Confidence 1 355666666666655
No 91
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=1.2e+02 Score=28.96 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhc-----cchHHHHHHHHHHhhhh
Q 022883 82 SQAYALLKQQMEVAAKT-----EDYKEAARIRDSLRSFE 115 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~-----E~ye~AA~LRdeIk~l~ 115 (290)
..+|+.|+..|++.... ++-++++.+..+|+++.
T Consensus 166 d~Ey~rfqkeI~~~~tesd~iveEeeed~~l~reieeid 204 (264)
T KOG3032|consen 166 DDEYKRFQKEIQDDLTESDSIVEEEEEDAALTREIEEID 204 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999877655 77788888888888554
No 92
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=32.48 E-value=1.4e+02 Score=22.97 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhh
Q 022883 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERF 136 (290)
Q Consensus 99 E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEry 136 (290)
+.+.+...+|.+|. .++.+|..++..+.+
T Consensus 56 ~~~~~~~~~r~~~~---------~~r~~l~~ll~~~~~ 84 (125)
T PF13801_consen 56 EFRQEMRALRQELR---------AARQELRALLAAPPP 84 (125)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHcCCCC
Confidence 44456666666666 666666666666665
No 93
>PLN02168 copper ion binding / pectinesterase
Probab=32.22 E-value=49 Score=34.46 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=31.7
Q ss_pred EEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccc
Q 022883 191 RVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSA 244 (290)
Q Consensus 191 ~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~ 244 (290)
.|++.|.-+++..| ||.=.-..+. -.-+||-|.|.-|.||++|.|.=-
T Consensus 68 ~V~v~N~L~~~tti---HWHGl~~~~~---~~~DGv~gtQcpI~PG~sftY~F~ 115 (545)
T PLN02168 68 NVNIFNNLTEPFLM---TWNGLQLRKN---SWQDGVRGTNCPILPGTNWTYRFQ 115 (545)
T ss_pred EEEEEeCCCCCccE---eeCCccCCCC---CCcCCCCCCcCCCCCCCcEEEEEE
Confidence 67777876655433 8874432222 124677788888999999999643
No 94
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.90 E-value=4.3e+02 Score=25.11 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=24.1
Q ss_pred cchHHHHHHHHHHhhhhccCcHHHHHHHHH
Q 022883 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMK 128 (290)
Q Consensus 99 E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~ 128 (290)
|+-+.-+.|+++|+++++++.++.++.++.
T Consensus 83 ek~~~q~~ieqeik~~q~elEvl~~n~Q~l 112 (246)
T KOG4657|consen 83 EKEARQMGIEQEIKATQSELEVLRRNLQLL 112 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888999999999888877766653
No 95
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.82 E-value=64 Score=31.53 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 80 gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.|...-+.||.+=+++++.++|++|...=.+--+|--.++|..-. +=..-+.-+.|++|..=....-.+.|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycN-RAAAy~~Lg~~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCN-RAAAYSKLGEYEDAVKDCESALSIDP 146 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHH-HHHHHHHhcchHHHHHHHHHHHhcCh
Confidence 355556677777777777777777777666555566666663321 11223344555665544444444445
No 96
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=31.51 E-value=2e+02 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
..++.+..+|..++..++++.|+.+-.+++
T Consensus 38 ~~~~~~~~~l~~~f~~~d~~~A~~~~~kLk 67 (78)
T PF07743_consen 38 ERIKELIKELAEAFDAKDWEEAKEALRKLK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 345666677777777899999999877777
No 97
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=30.54 E-value=1.3e+02 Score=24.68 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=39.1
Q ss_pred cCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEE-EeCCCC---EEeeeeCcccCCceeecCCC
Q 022883 163 TLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWII-TDANGK---TENILGVGVIGEQPVILPNT 237 (290)
Q Consensus 163 T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~I-tD~~G~---~~eV~G~GVVG~qPvL~PGe 237 (290)
+.+++|++.+. .. ...+- .+.|+++|.++.+|.|-.-==+- .|++|. ...+...+ ....=+|.||+
T Consensus 3 ~~~L~~~~~~~----~~--~~g~~--~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~-~~~~vtL~PG~ 72 (131)
T PF14016_consen 3 AADLSVTVGPV----DA--GAGQR--HATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGP-PPRPVTLAPGG 72 (131)
T ss_pred cccEEEEEecc----cC--CCCcc--EEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCC-CCCcEEECCCC
Confidence 56677777432 11 22222 78999999999999988764332 377777 22222212 33333679997
No 98
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=28.94 E-value=1.5e+02 Score=30.54 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhccchH
Q 022883 83 QAYALLKQQMEVAAKTEDYK 102 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye 102 (290)
+.+..||++|+-|++.+.|.
T Consensus 526 qEissLkDELQtalrDKkya 545 (593)
T KOG4807|consen 526 QEISSLKDELQTALRDKKYA 545 (593)
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 44555666666666665543
No 99
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=28.77 E-value=2.3e+02 Score=23.81 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred cccChHHHHHHHHHHHHHHHhccchHHHHHH----H---HHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 77 SFLSRSQAYALLKQQMEVAAKTEDYKEAARI----R---DSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 77 ~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~L----R---deIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
..|.+=+.+..+..+|-.|.+.+++++=..+ . ++|+.+....++.......+..+-..-.+..|.+|+.+.
T Consensus 6 ~ll~~Yq~I~~lS~~ML~aA~~g~Wd~Li~lE~~y~~~Ve~l~~~~~~~~l~~~~q~~~~~lL~~IL~nda~Ir~Llq 83 (121)
T PRK10548 6 HLLSAWQQILTLSQSMLRLATEGQWDELIEQEVAYVQAVEEIAHLTIPPDISTVMQEQLRPMLRQILDNEAELKQLLQ 83 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788899999999999999887665 3 333333333444433334444555555666677776643
No 100
>PLN03014 carbonic anhydrase
Probab=28.58 E-value=3.4e+02 Score=27.09 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhc-c--chHHHHHHHHHHhhhh--------ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC-CC
Q 022883 85 YALLKQQMEVAAKT-E--DYKEAARIRDSLRSFE--------EEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA-PN 152 (290)
Q Consensus 85 ye~Lk~qL~~aV~~-E--~ye~AA~LRdeIk~l~--------~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~-P~ 152 (290)
|+.--+.|++++.. + +-..|+++..-..+|+ ..|++.+|++..+.=. .+.|++-..++.++.+-. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~-~~~~~~~~~~~~~La~GQ~P~ 161 (347)
T PLN03014 83 YDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFK-KEKYETNPALYGELAKGQSPK 161 (347)
T ss_pred HHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHH-hhccccCHHHHHhhccCCCCC
Confidence 44333444444443 2 2345666666666665 2456666666654433 355665555555554432 43
Q ss_pred cc-Cccc
Q 022883 153 SL-LKCL 158 (290)
Q Consensus 153 ~~-~~~~ 158 (290)
.+ +.|+
T Consensus 162 alvI~Cs 168 (347)
T PLN03014 162 YMVFACS 168 (347)
T ss_pred EEEEEec
Confidence 33 3454
No 101
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=28.34 E-value=1.5e+02 Score=27.81 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=26.0
Q ss_pred CCcEEEEEeEEecCccc--CCCCeeEEEEEEEEEECCCCcEEEe
Q 022883 164 LGIRVQVRSVYIEDRSQ--PLKGQYFFAYRVRITNNSERPVQLL 205 (290)
Q Consensus 164 ~GI~V~V~~~y~~e~S~--p~~~~Y~FaY~IrI~N~s~~~VQLl 205 (290)
.+|+|+....--.+... -...++-|.|+|+|+|..+.++.|.
T Consensus 218 ~~v~v~r~~~~~~~~~g~~~~~~~~~~~~~itv~N~~~~~v~v~ 261 (317)
T PF13598_consen 218 PDVRVERKLLKKEEERGFFGKSQRRTYEYTITVRNNKDEPVTVT 261 (317)
T ss_pred CCEEEEEEecceecccccccccEEEEEEEEEEEECCCCCCEEEE
Confidence 45655554443311111 1235788999999999998886654
No 102
>PF01917 Arch_flagellin: Archaebacterial flagellin; InterPro: IPR002774 Archaeal motility occurs by the rotation of flagella that are different to bacterial flagella, but show similarity to bacterial type IV pili. These similarities include the multiflagellin nature of the flagellar filament, N-terminal sequence similarities, as well as the presence of homologous proteins in the two systems [, ]. Also unlike bacterial flagellins but similar to type IV pilins, archaeal flagellins are initially synthesised with a short leader peptide that is cleaved by a membrane-located peptidase [, ]. The enzyme responsible for the removal of the this leader peptide is FlaK [].; GO: 0005198 structural molecule activity, 0006928 cellular component movement
Probab=27.94 E-value=2.5e+02 Score=24.53 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=26.5
Q ss_pred ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEE-ECCCCcEEEeeceEEEEeC
Q 022883 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRIT-NNSERPVQLLRRHWIITDA 214 (290)
Q Consensus 160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~-N~s~~~VQLlsRhW~ItD~ 214 (290)
+.++.+|+|.-.+-.-+..+ -.=.+.|.|. |.+..+|-|-.-...+.+.
T Consensus 45 ~q~st~l~i~~~~~~~~~~~------~i~~i~i~V~~n~Gs~~Idl~~~~i~~~~~ 94 (190)
T PF01917_consen 45 QQVSTDLEIIGDVGSSPNSS------NIDYITIYVKLNTGSSPIDLSNTTITVSDD 94 (190)
T ss_pred HHhcCceEEEEEEeccCCCC------ceeEEEEEEEecCCCCcccccccEEEEEeC
Confidence 34566777665544111111 1112777888 7777776666665555543
No 103
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=27.60 E-value=1.6e+02 Score=24.56 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=37.3
Q ss_pred cccChHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHhhhhcc-----CcHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022883 77 SFLSRSQAYALLKQQMEVAAKT------EDYKEAARIRDSLRSFEEE-----EPIFRLRRLMKEAVAEERFEDAARYRDK 145 (290)
Q Consensus 77 ~~~gc~~cye~Lk~qL~~aV~~------E~ye~AA~LRdeIk~l~~~-----d~v~~L~~~L~~AI~eEryE~AA~lRDe 145 (290)
..-....+++.+..+|...|.. ..+.....+.+-+.+++.. ..+.+|+.++ -|-|++|......
T Consensus 34 ~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV-----~~Py~~~~~~~~~ 108 (132)
T PF10392_consen 34 PLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV-----IEPYEKIQKLTSQ 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHH
Confidence 3444556788888888888877 3333333333333322211 1122332222 4668888888888
Q ss_pred hhhc
Q 022883 146 LKEI 149 (290)
Q Consensus 146 i~eL 149 (290)
++.|
T Consensus 109 L~rl 112 (132)
T PF10392_consen 109 LERL 112 (132)
T ss_pred HHHH
Confidence 7775
No 104
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=27.58 E-value=2.2e+02 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 121 ~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
..|...=++|-++-+|+.|=+|||+|.+++
T Consensus 419 ~~li~~R~~aR~~Kdf~~AD~IRd~L~~~G 448 (463)
T PRK00260 419 EALIEERQEARKAKDFALADAIRDELAALG 448 (463)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Confidence 344344455666777999999999998875
No 105
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.49 E-value=1.9e+02 Score=32.30 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=43.7
Q ss_pred CccccChHHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHH-HHH
Q 022883 75 ARSFLSRSQAYALLKQQMEVAAKT---------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAAR-YRD 144 (290)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~aV~~---------E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~-lRD 144 (290)
++++..|...+..+|+-|..+=+. +=..++++.+.-|+-|++=+.+.++-..+++.|..|.|..|+. |++
T Consensus 88 ~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~ 167 (982)
T KOG3691|consen 88 SSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTR 167 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666543222 2233333333333333333345588899999999999999984 444
Q ss_pred Hhhhc
Q 022883 145 KLKEI 149 (290)
Q Consensus 145 ei~eL 149 (290)
-...|
T Consensus 168 ~~~~l 172 (982)
T KOG3691|consen 168 AWELL 172 (982)
T ss_pred HHHHh
Confidence 44444
No 106
>PLN03077 Protein ECB2; Provisional
Probab=27.44 E-value=5.4e+02 Score=27.62 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=31.7
Q ss_pred HhhhhhHHHHHHHHHhhhcCCCccCccceecccCCcEEEEEeEEecCcccCC
Q 022883 131 VAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIEDRSQPL 182 (290)
Q Consensus 131 I~eEryE~AA~lRDei~eL~P~~~~~~~s~~~T~GI~V~V~~~y~~e~S~p~ 182 (290)
....++++|+++|+++++.+-.....|+...+. -.|..+...+.+.|.
T Consensus 702 a~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~----~~~~~f~~~d~~h~~ 749 (857)
T PLN03077 702 ADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK----GKVHAFLTDDESHPQ 749 (857)
T ss_pred HHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC----CEEEEEecCCCCCcc
Confidence 357889999999999999653222366644432 245666677777663
No 107
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.26 E-value=1.6e+02 Score=24.26 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=30.6
Q ss_pred CceeecCCCceEEccccccc--cCceeeEEEEEEEEeCCCCCeeEEEEec
Q 022883 229 EQPVILPNTSFEYSSACPLS--TPSGRMEGDFEMKHVDRVGSQTFNVAIA 276 (290)
Q Consensus 229 ~qPvL~PGe~F~Y~S~~~L~--Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip 276 (290)
.-| |.+|+.|.|+...++. .|.+++...+.+.+ ++++..+-+.||
T Consensus 76 ~CP-l~~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d--~~~~~~~Cf~~~ 122 (123)
T cd00916 76 SCP-LSAGEDVTYTLSLPVLAPYPGISVTVEWELTD--DDGQVLTCFQIP 122 (123)
T ss_pred CCC-CcCCcEEEEEEeeeccccCCCeEEEEEEEEEc--CCCCEEEEEEee
Confidence 567 7889999999977774 47777777777764 334444445544
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.30 E-value=3.9e+02 Score=26.20 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhcCC-CccCcc
Q 022883 123 LRRLMKEAVAEERFEDAARYRDKLKEIAP-NSLLKC 157 (290)
Q Consensus 123 L~~~L~~AI~eEryE~AA~lRDei~eL~P-~~~~~~ 157 (290)
|+.+=.+++++++|++|.-.=.+..+|-| +++++|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyyc 119 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYC 119 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHH
Confidence 33444466666667666666666666665 344433
No 109
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=25.65 E-value=1.9e+02 Score=20.36 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 122 RLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 122 ~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.++.-+++|-...||++.+.|..=+++|.
T Consensus 7 ~I~~~I~qAk~~~r~dEV~~L~~NL~EL~ 35 (42)
T PF11464_consen 7 IIESYIKQAKAARRFDEVATLEENLRELQ 35 (42)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 77888999999999999999988888874
No 110
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=25.65 E-value=41 Score=27.56 Aligned_cols=47 Identities=34% Similarity=0.520 Sum_probs=29.5
Q ss_pred EEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccC-CceeecCCCceEEc
Q 022883 190 YRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIG-EQPVILPNTSFEYS 242 (290)
Q Consensus 190 Y~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG-~qPvL~PGe~F~Y~ 242 (290)
-.|++.|..+.+..| ||.=...... . .-+|+-| .+.-|.||++|+|.
T Consensus 36 v~i~~~N~l~~~~si---H~HG~~~~~~-~--~~DG~~~~~~~~i~pG~~~~Y~ 83 (117)
T PF07732_consen 36 VRITVTNNLDEPTSI---HWHGLHQPPS-P--WMDGVPGVTQCPIAPGESFTYE 83 (117)
T ss_dssp EEEEEEEESSSGBSE---EEETSBSTTG-G--GGSGGTTTSGSSBSTTEEEEEE
T ss_pred eEEEEEecccccccc---ccceeeeeee-e--ecCCcccccceeEEeecceeee
Confidence 367888877766544 8874443322 1 1334443 56779999999996
No 111
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.63 E-value=3.7e+02 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.2
Q ss_pred eeEEEEEEEEEECCCCcEEE
Q 022883 185 QYFFAYRVRITNNSERPVQL 204 (290)
Q Consensus 185 ~Y~FaY~IrI~N~s~~~VQL 204 (290)
.+.|.|+|+|+|....++.|
T Consensus 441 ~~~~~~~i~v~N~~~~~v~v 460 (525)
T TIGR02231 441 RTEYAYRITLKNLRKEPERV 460 (525)
T ss_pred EEEEEEEEEEEcCCCCceEE
Confidence 67899999999999877665
No 112
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.05 E-value=1.3e+02 Score=22.34 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=23.6
Q ss_pred EEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccccccc
Q 022883 188 FAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSACPLS 248 (290)
Q Consensus 188 FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~~~L~ 248 (290)
....++|+|.+.....=..=+|.+ +|... +.- ..|-|.||+...++=.....
T Consensus 21 ~~i~~~V~N~G~~~~~~~~v~~~~---~~~~~---~~~---~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 21 VTITVTVKNNGTADAENVTVRLYL---DGNSV---STV---TIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEE-SSS-BEEEEEEEEE---TTEEE---EEE---EESEB-TTEEEEEEEEEE-S
T ss_pred EEEEEEEEECCCCCCCCEEEEEEE---CCcee---ccE---EECCcCCCcEEEEEEEEEeC
Confidence 567778999987653322222322 22211 000 11789999865554433333
No 113
>PRK09039 hypothetical protein; Validated
Probab=24.90 E-value=5.4e+02 Score=25.14 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 121 FRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 121 ~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
..|...|..|+++ +-.+=+++|+++
T Consensus 175 ~~L~~~L~~a~~~-~~~~l~~~~~~~ 199 (343)
T PRK09039 175 ADLGRRLNVALAQ-RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 4566666666654 223334555554
No 114
>PF15067 FAM124: FAM124 family
Probab=24.35 E-value=3.3e+02 Score=25.79 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhhhcCCCc--cCccceec-ccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECC------CCcEEE
Q 022883 134 ERFEDAARYRDKLKEIAPNS--LLKCLSDA-TTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNS------ERPVQL 204 (290)
Q Consensus 134 EryE~AA~lRDei~eL~P~~--~~~~~s~~-~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s------~~~VQL 204 (290)
|+||+|.++=..|-.-+|.. ..-|.++- .+.|+.|..+-..+|..-.|.. .-...-..++++.+ ..+|--
T Consensus 139 ~N~~d~vr~Yelil~~~~~~~k~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p-~esavLqF~V~~igqLvpLLPnpc~P 217 (236)
T PF15067_consen 139 DNYEDMVRFYELILQREPTQQKEDFCFFTLYSQPGLDIQLSLKQLPPGMSPEP-TESAVLQFRVEDIGQLVPLLPNPCSP 217 (236)
T ss_pred CCHHHHHHHHHHHhccCcceeeCCcEEEEEecCCCeEEEEEeccCCCCCCccc-ccceEEEEEecchhhhcccCCCCccc
Confidence 56777777666655544411 11233322 3679999999999966544422 22234455556654 477777
Q ss_pred ee-ceEEEEeCCCCE
Q 022883 205 LR-RHWIITDANGKT 218 (290)
Q Consensus 205 ls-RhW~ItD~~G~~ 218 (290)
++ -+|..+|-||+.
T Consensus 218 IS~~rWqT~D~DGNk 232 (236)
T PF15067_consen 218 ISETRWQTEDYDGNK 232 (236)
T ss_pred ccCCcceeeCCCCCE
Confidence 76 579999999985
No 115
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=24.29 E-value=2.2e+02 Score=29.53 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 119 ~v~~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
.++.+...++.|+.+.+|.+||.+=.+++.
T Consensus 107 ~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~ 136 (593)
T PF06248_consen 107 EIDELLEEVEEALKEGNYLDAADLLEELKS 136 (593)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345666777899999999999966555444
No 116
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.14 E-value=1.9e+02 Score=24.19 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHH
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEA 130 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~A 130 (290)
..+..-+..|++|...++.++-++-++++. +.+.+|++|
T Consensus 77 ~kV~ere~eL~eA~~~G~~~KI~K~~~KL~---------ea~~eL~~A 115 (115)
T PF06476_consen 77 QKVAEREAELKEAQAKGDSDKIAKRQKKLA---------EAKAELKEA 115 (115)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------HHHHHHhhC
Confidence 456667777888888888877777777777 666666543
No 117
>PLN02792 oxidoreductase
Probab=24.11 E-value=70 Score=33.23 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=30.7
Q ss_pred EEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEccc
Q 022883 190 YRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSSA 244 (290)
Q Consensus 190 Y~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S~ 244 (290)
-.|++.|.-+++..| ||.=.-..+. -.-+||-|.|.=|.||++|.|.=-
T Consensus 57 v~V~v~N~L~~~tti---HWHGl~q~~~---~~~DGv~~tqcPI~PG~sftY~F~ 105 (536)
T PLN02792 57 LVINVHNDLDEPFLL---SWNGVHMRKN---SYQDGVYGTTCPIPPGKNYTYDFQ 105 (536)
T ss_pred EEEEEEeCCCCCcCE---eCCCcccCCC---CccCCCCCCcCccCCCCcEEEEEE
Confidence 367777877666544 8863322211 124566666677799999999643
No 118
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.11 E-value=1.1e+02 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.431 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHhhhh-ccCcHHHHHHHHHHHHhhhhh
Q 022883 99 EDYKEAARIRDSLRSFE-EEEPIFRLRRLMKEAVAEERF 136 (290)
Q Consensus 99 E~ye~AA~LRdeIk~l~-~~d~v~~L~~~L~~AI~eEry 136 (290)
++|+++.++-|.+-+.+ .+.++..|++.++.+|.+|=+
T Consensus 85 keY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 85 KEYSKSLRYVDALLETEPNNRQALELKETIEDKITKEGL 123 (149)
T ss_pred hhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhcce
Confidence 88999999988888888 677888898888888887754
No 119
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.64 E-value=4.6e+02 Score=25.48 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhccchHHHH
Q 022883 84 AYALLKQQMEVAAKTEDYKEAA 105 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA 105 (290)
.+..||..|.+. .|.|.+|.
T Consensus 78 s~r~lk~~l~ev--EekyrkAM 97 (302)
T PF09738_consen 78 SLRDLKDSLAEV--EEKYRKAM 97 (302)
T ss_pred cHHHHHHHHHHH--HHHHHHHH
Confidence 555566655543 24455554
No 120
>PF10388 YkuI_C: EAL-domain associated signalling protein domain; InterPro: IPR018842 In most cases this highly conserved region of the YkuI protein lies immediately downstream of the EAL (diguanylate cyclase/phosphodiesterase) domain IPR001633 from INTERPRO so that together they form a monomer which dimerises for its enzymatic action. This region contains three alpha helices and five beta strands and forms C-terminal half of the structure. ; PDB: 3BY9_A 2BAS_B 2W27_A.
Probab=23.27 E-value=2e+02 Score=25.28 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHH--HHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCccCcc
Q 022883 80 SRSQAYALLKQQMEVAAKTEDYKEAARIR--DSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKC 157 (290)
Q Consensus 80 gc~~cye~Lk~qL~~aV~~E~ye~AA~LR--deIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P~~~~~~ 157 (290)
.+..+=+.|+.+++..|..+.-+..+.+. .+|+ ..+...|.......+.. ..+......|.+..+ +
T Consensus 3 ~~~~~k~~l~~~~~~Fi~~~~~~~~~~~~~~~~l~--------~~l~~ll~~l~~~~~~~--e~~~~l~~~l~~~~~--r 70 (166)
T PF10388_consen 3 DRDSLKEKLKKEFEQFIQHEKKKLEKQYQLEEQLR--------EKLKSLLESLKKSAEED--ELLSQLAKKLPDYIF--R 70 (166)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSSSH--HHHHHHHHHCCCCHC--C
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchHH--HHHHHHHHhCccceE--E
Confidence 34445567777777777775544444321 2222 11122222222333322 333344555655322 3
Q ss_pred ceecccCCcEEEEEe
Q 022883 158 LSDATTLGIRVQVRS 172 (290)
Q Consensus 158 ~s~~~T~GI~V~V~~ 172 (290)
.+.+-.+|++|+-.-
T Consensus 71 ~Yi~D~~G~Qis~N~ 85 (166)
T PF10388_consen 71 VYICDEDGFQISPNF 85 (166)
T ss_dssp CCECECCCEETTSEE
T ss_pred EEEECCCCcCcCcce
Confidence 455667888775433
No 121
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.24 E-value=1.8e+02 Score=22.68 Aligned_cols=14 Identities=14% Similarity=0.631 Sum_probs=9.3
Q ss_pred CceeecCCCceEEc
Q 022883 229 EQPVILPNTSFEYS 242 (290)
Q Consensus 229 ~qPvL~PGe~F~Y~ 242 (290)
..++|.||++|+|+
T Consensus 60 ~~~~~~~G~~~~~t 73 (99)
T PF00127_consen 60 SSPLLAPGETYSVT 73 (99)
T ss_dssp EEEEBSTTEEEEEE
T ss_pred cceecCCCCEEEEE
Confidence 35678888766653
No 122
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=23.17 E-value=2.6e+02 Score=19.30 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHH-hhh-hhHHHHHHHHHhhhcCC
Q 022883 93 EVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAV-AEE-RFEDAARYRDKLKEIAP 151 (290)
Q Consensus 93 ~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI-~eE-ryE~AA~lRDei~eL~P 151 (290)
..+++.++|++|...=++.-.+...++. +.-.+-.+- ..+ +|++|...=++.-+|.|
T Consensus 11 ~~~~~~~~~~~A~~~~~~ai~~~p~~~~--~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 11 QIYFQQGDYEEAIEYFEKAIELDPNNAE--AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566779999998886665555544433 222232232 333 68999888888777765
No 123
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=22.57 E-value=4.3e+02 Score=25.24 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcH--HHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI--FRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v--~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
-+.|=++-...++.++|++|.+.=+.|..----.|. ..+-.......++.+|++|...-|++..+-|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 456667778888999999999977777644433333 3344566778899999999999999999987
No 124
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=22.54 E-value=1.5e+02 Score=25.42 Aligned_cols=56 Identities=27% Similarity=0.434 Sum_probs=35.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhH---HHHHHHHHhhhcCC
Q 022883 90 QQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFE---DAARYRDKLKEIAP 151 (290)
Q Consensus 90 ~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE---~AA~lRDei~eL~P 151 (290)
++|+.+++.++|.+|..|-=++. .-+++..-++..+..+.-+ .-..+..-|+.|.+
T Consensus 2 Q~L~N~l~~~~y~~Al~LAl~L~------~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~ 60 (141)
T PF08625_consen 2 QELSNLLRQKDYKEALRLALKLD------HPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDD 60 (141)
T ss_pred chHHHHHHhhhHHHHHHHHHhcC------CcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCH
Confidence 68999999999999999854444 2346667777777222211 22455555666554
No 125
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.08 E-value=5e+02 Score=23.00 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=59.7
Q ss_pred ccChHHH-HHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC
Q 022883 78 FLSRSQA-YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (290)
Q Consensus 78 ~~gc~~c-ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P~ 152 (290)
.+.|++. ..-|-+-+..++...+...+..+-|.++-|+-+.+-.++.+.. -.|...++.+|+++=.++.+=.++
T Consensus 2 y~qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~-l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 2 YIQCSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW-LLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCcCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH-HHHHcCCHHHHHHHHHhhhccCCC
Confidence 3567665 4567777778888999999999999999999888877777766 578899999999988888776654
No 126
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.80 E-value=4e+02 Score=22.98 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhhccC
Q 022883 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEEEE 118 (290)
Q Consensus 87 ~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d 118 (290)
.|-..|.++|++++|+.|..--.+.+.+-...
T Consensus 88 ~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 88 NLPSNLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999888766666555443
No 127
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=21.65 E-value=3.9e+02 Score=23.00 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 022883 83 QAYALLKQQMEVAAKT 98 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~ 98 (290)
.++...|.+|..+++.
T Consensus 73 ~e~q~kK~KLl~mL~e 88 (140)
T PF07526_consen 73 QELQRKKAKLLSMLDE 88 (140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777766
No 128
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=21.62 E-value=60 Score=26.38 Aligned_cols=39 Identities=33% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHH
Q 022883 103 EAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAAR 141 (290)
Q Consensus 103 ~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~ 141 (290)
+..+.|++|..+=.+||+..........-.+|+|+.+++
T Consensus 14 ~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~ 52 (125)
T PF14749_consen 14 EKLERRREIESLIESDPIFSKPPDRYFLSREERYERALR 52 (125)
T ss_dssp HHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHH
Confidence 446667888888888998777666667777888876663
No 129
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.33 E-value=2.7e+02 Score=27.12 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=30.0
Q ss_pred HhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 96 AKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 96 V~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+++++++|...=.+..+...+..+......-+-++..++|++|...=+++.++.|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P 184 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP 184 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 44566666655544444333333333322334456666777777776666666666
No 130
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.05 E-value=5.6e+02 Score=22.28 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=22.6
Q ss_pred cCcHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 117 EEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 117 ~d~v~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
.+++.+-...|-+|+.+.+|+.|-.|--.|
T Consensus 87 s~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L 116 (157)
T PF07304_consen 87 SKPVVDKLHQLAQALQARDYDAADEIHVDL 116 (157)
T ss_dssp -HHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455677778899999999999998775544
No 131
>PRK11020 hypothetical protein; Provisional
Probab=20.85 E-value=1.4e+02 Score=25.45 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
|.+..+++.|..|...++-+..+.+.+|+..|.
T Consensus 12 drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~ 44 (118)
T PRK11020 12 DRLDAIRHKLAAASLRGDAEKYAQFEKEKATLE 44 (118)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 445577777777777777777777777766643
No 132
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=20.74 E-value=3.3e+02 Score=26.92 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 022883 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (290)
Q Consensus 81 c~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL 149 (290)
|...++.-++.|...++ +..++++.-..+|..|+ +.+..+....++.-++..-++|-.+=+++.+|
T Consensus 95 ~~rri~~~kerL~e~~e-e~~~e~~~k~~~v~~l~--e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~l 160 (319)
T KOG0796|consen 95 VDRRIEKAKERLAETVE-ERSEEAARKAEKVHELE--EKIGKLLEKAEELGEEGNVEEAQKAMKEVEEL 160 (319)
T ss_pred HHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 33445555555555533 33344443334455444 44566777777777777777776665554444
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=20.56 E-value=2.6e+02 Score=18.30 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=29.0
Q ss_pred HHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 94 ~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
...+.+++++|..+-+++..+...++.. ....-.-.+..+++++|..+-.....+.|
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDPDNADA-YYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445577777777666655444444311 11122223344667777765555544444
No 134
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.14 E-value=3.1e+02 Score=25.80 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhh----hccCcHHHHHHHHHH
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSF----EEEEPIFRLRRLMKE 129 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l----~~~d~v~~L~~~L~~ 129 (290)
+........|+.+++.++|.+|..+-.+.+.+ .+=..+.+|...|++
T Consensus 125 ~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e 175 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHH
Confidence 44556677889999999999999995555433 332333444444433
No 135
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=20.02 E-value=6.2e+02 Score=22.44 Aligned_cols=72 Identities=28% Similarity=0.304 Sum_probs=58.6
Q ss_pred cChHHH-HHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 79 LSRSQA-YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 79 ~gc~~c-ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.|++. ..-|-+-+..+++.++...+..+-+.++.|+-+-+-..+.+.+ -.|...++.+|.++=.++.+=.|
T Consensus 3 ~~C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~-l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 3 LQCSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW-LHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred CcCcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH-HHHHhCCHHHHHHHHHHHhccCC
Confidence 456655 5667777888899999999999999999999887777777666 67899999999988777776555
No 136
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=20.02 E-value=1.3e+02 Score=24.73 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 022883 84 AYALLKQQMEVA 95 (290)
Q Consensus 84 cye~Lk~qL~~a 95 (290)
+++.|+++|+.+
T Consensus 11 eI~kLqe~lk~~ 22 (98)
T PRK13848 11 EIAKLQEQLKQA 22 (98)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 137
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=20.01 E-value=1.9e+02 Score=29.56 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhh
Q 022883 90 QQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERF 136 (290)
Q Consensus 90 ~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEry 136 (290)
.+|...+.-+.=|.-|++|+||...+..+--.--...|+.||...++
T Consensus 276 e~L~~~L~l~qEE~~aKa~Rqla~~~R~eLh~if~~qi~~ai~~GeL 322 (429)
T PF12297_consen 276 EHLRRSLLLQQEEDFAKARRQLAVFRRVELHEIFFEQIKSAIFKGEL 322 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555555566667788888776664444456788999999987
Done!