Query 022883
Match_columns 290
No_of_seqs 254 out of 795
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 12:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1e_A Protein APAG; APAG prot 100.0 2.1E-51 7.3E-56 343.7 16.5 123 159-284 2-124 (127)
2 1xvs_A Protein APAG; MCSG APC2 100.0 3.7E-51 1.3E-55 341.8 15.9 123 160-285 2-124 (126)
3 1tza_A APAG protein, SOR45; st 100.0 8.3E-51 2.8E-55 342.8 16.1 123 161-286 3-125 (134)
4 1xq4_A Protein APAG; all beta 100.0 2.5E-50 8.7E-55 341.7 16.3 123 160-285 7-129 (139)
5 1e52_A Excinuclease ABC subuni 97.4 0.0001 3.5E-09 54.5 3.7 34 82-115 23-56 (63)
6 1e52_A Excinuclease ABC subuni 97.4 9.2E-05 3.2E-09 54.7 3.1 29 122-150 28-56 (63)
7 2d7d_A Uvrabc system protein B 95.2 0.013 4.4E-07 59.5 4.4 33 119-151 627-659 (661)
8 2d7d_A Uvrabc system protein B 95.1 0.013 4.5E-07 59.4 4.1 34 83-116 626-659 (661)
9 3nrf_A APAG protein; structura 93.7 0.28 9.6E-06 39.5 8.1 77 161-237 2-78 (106)
10 1c4o_A DNA nucleotide excision 93.5 0.013 4.5E-07 59.5 0.0 34 118-151 611-644 (664)
11 1c4o_A DNA nucleotide excision 93.5 0.014 4.6E-07 59.3 0.0 35 82-116 610-644 (664)
12 3cfu_A Uncharacterized lipopro 81.1 8.7 0.0003 32.2 9.1 104 162-278 9-127 (159)
13 3uo3_A J-type CO-chaperone JAC 79.5 4.5 0.00015 34.7 6.8 32 120-151 134-175 (181)
14 1gp8_A Protein (scaffolding pr 76.4 4.2 0.00014 27.2 4.4 33 82-114 7-39 (40)
15 3kxe_C Antitoxin protein PARD- 76.3 2.8 9.5E-05 32.3 4.1 61 87-147 13-77 (88)
16 3pxg_A Negative regulator of g 76.3 3.9 0.00013 39.3 6.1 39 74-112 392-430 (468)
17 2fzt_A Hypothetical protein TM 65.5 12 0.0004 28.5 5.2 32 85-116 4-35 (79)
18 3hho_A CO-chaperone protein HS 63.9 19 0.00066 30.3 7.1 57 84-145 97-154 (174)
19 3frr_A Uncharacterized protein 61.1 18 0.00061 31.5 6.5 61 84-144 9-75 (191)
20 2yru_A Steroid receptor RNA ac 57.5 27 0.00093 28.1 6.6 71 77-147 7-88 (118)
21 2iaa_C Azurin; quinoprotein, t 57.5 15 0.0005 29.7 5.0 26 189-214 27-52 (128)
22 1gp8_A Protein (scaffolding pr 56.9 17 0.00057 24.3 4.2 34 107-149 6-39 (40)
23 3pxg_A Negative regulator of g 54.7 10 0.00034 36.4 4.1 31 120-150 403-433 (468)
24 1fpo_A HSC20, chaperone protei 53.3 42 0.0015 28.1 7.4 56 84-144 94-149 (171)
25 1nwp_A Azurin; electron transp 50.5 17 0.00059 29.2 4.3 25 189-213 28-52 (128)
26 1sr2_A Putative sensor-like hi 49.7 46 0.0016 26.1 6.7 59 90-148 49-110 (116)
27 2lni_A Stress-induced-phosphop 49.2 65 0.0022 22.5 8.3 67 84-151 15-81 (133)
28 2fbn_A 70 kDa peptidylprolyl i 48.4 97 0.0033 24.3 9.2 69 83-151 36-119 (198)
29 3isy_A Bsupi, intracellular pr 48.0 73 0.0025 25.6 7.7 57 188-246 20-87 (120)
30 3he4_B Synzip5; heterodimeric 45.6 21 0.00071 23.9 3.3 22 119-140 21-42 (46)
31 2xev_A YBGF; tetratricopeptide 45.4 76 0.0026 22.4 6.9 21 131-151 50-70 (129)
32 1wjt_A Transcription elongatio 43.5 52 0.0018 25.8 6.0 71 78-148 7-84 (103)
33 3v1a_A Computational design, M 43.2 36 0.0012 23.6 4.3 30 83-112 8-37 (48)
34 3us6_A Histidine-containing ph 43.2 1E+02 0.0035 25.2 8.1 60 88-147 56-120 (153)
35 3myf_A Sensor protein; HPT, hi 43.0 99 0.0034 24.1 7.7 64 86-149 34-105 (119)
36 2ccw_A Azurin II, AZN-2; elect 42.1 16 0.00054 29.5 2.8 26 189-214 28-53 (129)
37 2lf0_A Uncharacterized protein 42.0 22 0.00076 29.1 3.6 36 82-117 16-51 (123)
38 3t9w_A Small laccase, multi-co 41.9 20 0.00069 32.4 3.8 45 190-242 68-112 (299)
39 3v1a_A Computational design, M 41.3 82 0.0028 21.7 6.0 30 121-150 11-40 (48)
40 3ay2_A Lipid modified azurin p 41.0 6.9 0.00024 33.3 0.5 26 189-214 68-93 (167)
41 1z0k_B FYVE-finger-containing 40.9 1.1E+02 0.0037 22.7 7.2 35 80-114 24-58 (69)
42 2y4t_A DNAJ homolog subfamily 40.7 1.2E+02 0.004 26.6 8.6 77 74-151 15-91 (450)
43 3ggy_A Increased sodium tolera 39.7 1E+02 0.0035 26.7 7.9 60 84-143 8-73 (193)
44 3upv_A Heat shock protein STI1 39.4 1E+02 0.0035 22.0 8.4 65 86-151 5-69 (126)
45 3sz7_A HSC70 cochaperone (SGT) 38.9 1.2E+02 0.0042 22.8 8.4 65 86-151 12-76 (164)
46 1yzm_A FYVE-finger-containing 38.3 92 0.0031 21.7 5.9 30 83-112 9-38 (51)
47 3lay_A Zinc resistance-associa 37.5 51 0.0017 28.2 5.5 6 107-112 90-95 (175)
48 2a0b_A HPT domain; sensory tra 37.5 66 0.0023 24.8 5.8 59 88-146 43-104 (125)
49 3zx1_A Oxidoreductase, putativ 35.9 84 0.0029 30.5 7.4 71 162-244 49-136 (481)
50 3mq7_A Bone marrow stromal ant 35.1 92 0.0032 25.4 6.3 54 81-149 51-104 (121)
51 3tas_A Small laccase, multi-co 34.5 31 0.0011 31.3 3.8 46 190-243 52-97 (313)
52 1nep_A EPV20, BNPC2, epididyma 33.6 65 0.0022 25.5 5.3 45 229-276 79-125 (130)
53 3gyr_A PHS, phenoxazinone synt 33.2 1.5E+02 0.0052 28.6 8.8 36 154-190 23-58 (612)
54 3ffl_A Anaphase-promoting comp 33.1 93 0.0032 26.5 6.4 55 86-140 21-83 (167)
55 2vgx_A Chaperone SYCD; alterna 33.1 1.6E+02 0.0055 22.4 8.8 67 84-151 20-86 (148)
56 2p06_A Hypothetical protein AF 33.1 34 0.0012 26.7 3.2 24 122-148 67-90 (114)
57 1yvi_A Histidine-containing ph 32.5 1.9E+02 0.0065 23.1 8.0 59 88-146 57-120 (149)
58 2kc7_A BFR218_protein; tetratr 32.4 1.2E+02 0.004 20.6 7.5 58 94-151 9-66 (99)
59 4gco_A Protein STI-1; structur 32.2 1.5E+02 0.0052 21.9 8.8 68 83-151 11-78 (126)
60 3u3w_A Transcriptional activat 31.9 2.3E+02 0.0077 23.8 8.9 68 82-149 72-144 (293)
61 1z0j_B FYVE-finger-containing 31.9 1.3E+02 0.0043 21.7 5.9 30 83-112 16-45 (59)
62 2xcb_A PCRH, regulatory protei 31.9 1.5E+02 0.0053 21.8 8.8 68 83-151 16-83 (142)
63 2dba_A Smooth muscle cell asso 31.8 1.4E+02 0.0047 21.2 9.1 69 83-151 26-96 (148)
64 3gyz_A Chaperone protein IPGC; 31.1 1.9E+02 0.0065 22.6 8.8 67 84-151 35-101 (151)
65 2k48_A Nucleoprotein; viral pr 31.0 1.2E+02 0.0041 24.2 6.2 15 120-134 91-105 (107)
66 1yzm_A FYVE-finger-containing 30.7 76 0.0026 22.2 4.4 29 122-150 13-41 (51)
67 3he5_B Synzip2; heterodimeric 30.3 1E+02 0.0035 21.0 4.9 39 104-150 5-44 (52)
68 3hho_A CO-chaperone protein HS 30.1 1.3E+02 0.0045 25.1 6.8 30 83-112 127-156 (174)
69 3uq3_A Heat shock protein STI1 29.9 1.8E+02 0.006 22.8 7.3 66 84-151 4-69 (258)
70 3cg8_A Laccase; oxidoreductase 29.8 39 0.0013 31.1 3.7 47 189-243 86-132 (343)
71 3a7m_A Flagellar protein FLIT; 29.5 1.3E+02 0.0046 24.0 6.5 70 77-146 6-82 (122)
72 1sdd_A Coagulation factor V; c 28.6 47 0.0016 29.8 4.0 52 189-244 69-125 (306)
73 1iby_A Nitrosocyanin; RED copp 27.9 92 0.0032 23.3 5.0 13 230-242 70-82 (112)
74 2d2s_A Exocyst complex compone 27.9 1.6E+02 0.0056 25.8 7.3 34 83-116 16-49 (235)
75 1p5q_A FKBP52, FK506-binding p 27.8 2.8E+02 0.0094 24.3 8.9 67 85-151 147-227 (336)
76 1z0k_B FYVE-finger-containing 27.8 83 0.0028 23.3 4.4 29 122-150 31-59 (69)
77 2p32_A Heat shock 70 kDa prote 27.6 1.1E+02 0.0038 23.7 5.6 67 75-150 13-81 (120)
78 3lay_A Zinc resistance-associa 27.6 1.5E+02 0.0051 25.3 6.8 12 105-116 95-106 (175)
79 3syn_E ATP-binding protein YLX 27.6 25 0.00084 20.5 1.2 16 134-149 4-19 (23)
80 3h3m_A Flagellar protein FLIT; 27.5 1.9E+02 0.0063 23.4 7.0 72 76-147 18-96 (126)
81 3uo3_A J-type CO-chaperone JAC 27.2 1.3E+02 0.0044 25.4 6.3 29 84-112 133-161 (181)
82 1hxi_A PEX5, peroxisome target 26.3 1.9E+02 0.0065 21.1 6.9 56 95-151 27-82 (121)
83 3iqt_A Signal transduction his 26.1 1.8E+02 0.0061 22.9 6.6 64 86-149 43-114 (123)
84 3jt0_A Lamin-B1; structural ge 25.7 1.4E+02 0.0049 24.6 6.2 88 192-288 40-142 (144)
85 2dl1_A Spartin; SPG20, MIT, st 25.7 1E+02 0.0036 24.8 5.1 59 81-148 15-82 (116)
86 2l6j_A TPR repeat-containing p 25.4 1.6E+02 0.0054 19.9 8.4 65 87-152 6-70 (111)
87 3mkr_A Coatomer subunit epsilo 25.3 2.8E+02 0.0096 23.7 8.4 60 92-151 137-197 (291)
88 1vcs_A Vesicle transport throu 25.1 2.1E+02 0.0073 21.8 6.7 26 73-98 2-27 (102)
89 2yhc_A BAMD, UPF0169 lipoprote 25.1 2.6E+02 0.0091 22.3 8.2 63 90-152 9-73 (225)
90 2gw1_A Mitochondrial precursor 25.0 3.5E+02 0.012 23.7 9.1 66 84-151 5-70 (514)
91 2x3c_A Toxic extracellular end 25.0 58 0.002 30.5 4.0 41 164-214 22-62 (343)
92 1lm8_V VHL, VON hippel-lindau 24.9 95 0.0033 26.3 4.9 36 191-240 20-55 (160)
93 1kt0_A FKBP51, 51 kDa FK506-bi 24.8 3.2E+02 0.011 25.2 9.1 69 83-151 266-348 (457)
94 1ses_A Seryl-tRNA synthetase; 24.7 3.6E+02 0.012 25.6 9.6 39 102-150 64-102 (421)
95 1cuo_A Protein (azurin ISO-2); 23.9 21 0.00073 28.7 0.7 51 189-240 28-94 (129)
96 3bvo_A CO-chaperone protein HS 23.9 1.3E+02 0.0045 25.9 5.8 64 79-142 94-186 (207)
97 3qou_A Protein YBBN; thioredox 23.8 2.2E+02 0.0076 24.1 7.3 57 94-151 126-182 (287)
98 3qc1_A Immunoglobulin-binding 23.7 1.5E+02 0.005 26.5 6.2 74 99-177 35-108 (243)
99 1z0j_B FYVE-finger-containing 23.6 1.1E+02 0.0036 22.1 4.2 29 122-150 20-48 (59)
100 3l21_A DHDPS, dihydrodipicolin 23.4 2.3E+02 0.0079 25.5 7.7 35 78-112 215-249 (304)
101 1ud0_A HSC70, 70 kDa heat-shoc 23.0 2.4E+02 0.0083 21.1 6.7 59 83-150 7-67 (113)
102 1pc2_A Mitochondria fission pr 22.8 2.7E+02 0.0094 22.9 7.4 21 131-151 82-102 (152)
103 2ho1_A Type 4 fimbrial biogene 22.6 2.8E+02 0.0097 21.8 8.2 66 85-151 37-102 (252)
104 2ra1_A Surface layer protein; 22.3 1.7E+02 0.0057 28.5 6.6 69 83-151 101-204 (412)
105 3pxi_A Negative regulator of g 22.2 1.5E+02 0.0051 29.8 6.7 39 76-114 394-432 (758)
106 3nkz_A Flagellar protein FLIT; 21.9 2.4E+02 0.0084 22.4 6.7 69 78-146 10-85 (123)
107 2v6v_A BUD emergence protein 1 21.9 1.3E+02 0.0046 24.7 5.3 37 163-207 16-52 (156)
108 3bvo_A CO-chaperone protein HS 21.9 1.9E+02 0.0065 24.9 6.5 13 139-151 193-205 (207)
109 2kck_A TPR repeat; tetratricop 21.8 1.8E+02 0.0062 19.2 6.5 18 134-151 91-108 (112)
110 3mkr_A Coatomer subunit epsilo 21.7 1.8E+02 0.0063 24.9 6.4 54 97-151 212-266 (291)
111 2vyi_A SGTA protein; chaperone 21.7 2E+02 0.0067 19.6 9.0 67 84-151 11-77 (131)
112 1elw_A TPR1-domain of HOP; HOP 21.6 1.9E+02 0.0064 19.3 8.8 59 92-151 11-69 (118)
113 1use_A VAsp, vasodilator-stimu 21.3 2E+02 0.0069 19.6 5.3 15 83-97 7-21 (45)
114 3us6_A Histidine-containing ph 21.2 1.1E+02 0.0036 25.1 4.5 37 75-112 84-120 (153)
115 1fpo_A HSC20, chaperone protei 20.4 2.4E+02 0.0083 23.4 6.6 25 88-112 128-152 (171)
116 2c2l_A CHIP, carboxy terminus 20.2 3.9E+02 0.013 22.5 8.2 52 99-151 52-103 (281)
117 3i00_A HIP-I, huntingtin-inter 20.2 2.9E+02 0.0099 22.1 6.8 61 84-151 16-82 (120)
118 3ma5_A Tetratricopeptide repea 20.1 2E+02 0.0069 20.0 5.4 53 95-148 17-69 (100)
119 4i17_A Hypothetical protein; T 20.1 3.2E+02 0.011 21.4 8.4 58 93-151 15-73 (228)
No 1
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=100.00 E-value=2.1e-51 Score=343.65 Aligned_cols=123 Identities=39% Similarity=0.697 Sum_probs=113.4
Q ss_pred eecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCc
Q 022883 159 SDATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTS 238 (290)
Q Consensus 159 s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~ 238 (290)
++++|+||+|+|+|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++
T Consensus 2 ~~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~ 81 (127)
T 2f1e_A 2 QDDPRYRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEA 81 (127)
T ss_dssp ----CCCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTCE
T ss_pred ccceECCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCC
Q 022883 239 FEYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMG 284 (290)
Q Consensus 239 F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~ 284 (290)
|+|+|+|+|+||.|+|+|+|+|+.. + |+.|+|.||+|+|++|.
T Consensus 82 f~YtSg~~L~tp~G~M~G~y~m~~~--~-G~~F~v~Ip~F~L~~P~ 124 (127)
T 2f1e_A 82 FHYTSGVLLETEQGQMQGHYDMVAD--D-GTEFIAPIAAFVLSVPR 124 (127)
T ss_dssp EEEEEEEEESSSCEEEEEEEEEEET--T-CCEEEEEEEEEEEC---
T ss_pred eEEeCCcCcCCCcEEEEEEEEEEEC--C-CCEEEEECCceEcCCCc
Confidence 9999999999999999999999863 3 68999999999999996
No 2
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=100.00 E-value=3.7e-51 Score=341.81 Aligned_cols=123 Identities=41% Similarity=0.704 Sum_probs=118.2
Q ss_pred ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF 239 (290)
Q Consensus 160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F 239 (290)
+++|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|
T Consensus 2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f 81 (126)
T 1xvs_A 2 DVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEY 81 (126)
T ss_dssp BCSCCCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEE
T ss_pred CcccCCEEEEEEEEEchhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCCce
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883 240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD 285 (290)
Q Consensus 240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~ 285 (290)
+|+|+|+|+||.|+|+|+|+|+. ++ |+.|+|.||+|+|++|.-
T Consensus 82 ~YtSg~~L~tp~G~M~G~y~m~~--~~-G~~F~v~Ip~F~L~~P~~ 124 (126)
T 1xvs_A 82 TYSSGTALDTPVGVMQGQYLMID--EQ-GESFTVEIEPFRLAVPHV 124 (126)
T ss_dssp EEEEEEEESSSEEEEEEEEEEEC--TT-SCEEEEEEEEEEEECCCC
T ss_pred EEeCCcCcCCCcEEEEEEEEEEE--CC-CCEEEEECCceEcCCccc
Confidence 99999999999999999999985 33 699999999999999973
No 3
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=100.00 E-value=8.3e-51 Score=342.84 Aligned_cols=123 Identities=46% Similarity=0.756 Sum_probs=118.7
Q ss_pred cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceE
Q 022883 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFE 240 (290)
Q Consensus 161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~ 240 (290)
++|+||+|+|+|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|+
T Consensus 3 ~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F~ 82 (134)
T 1tza_A 3 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQ 82 (134)
T ss_dssp CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEE
T ss_pred CccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCceE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCCC
Q 022883 241 YSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGDD 286 (290)
Q Consensus 241 Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~~ 286 (290)
|+|+|+|.||.|+|+|+|+|+.. + |+.|+|.||+|+|++|..+
T Consensus 83 YtSg~~L~Tp~G~M~G~y~m~~~--~-G~~F~v~Ip~F~L~~P~~~ 125 (134)
T 1tza_A 83 YTSGTVLDTPFGIMYGTYGMVSE--S-GEHFNAIIKPFRLATPGLL 125 (134)
T ss_dssp EEEEEEESSSEEEEEEEEEEEET--T-CCEEEEEEEEEEEECTTSS
T ss_pred EcCCcCcCCCceEEEEEEEEEEC--C-CCEEEEECCCeEccCCChh
Confidence 99999999999999999999863 3 6899999999999999875
No 4
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=100.00 E-value=2.5e-50 Score=341.69 Aligned_cols=123 Identities=40% Similarity=0.773 Sum_probs=118.5
Q ss_pred ecccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCce
Q 022883 160 DATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSF 239 (290)
Q Consensus 160 ~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F 239 (290)
..+|+||+|+|.|.|+|++|+|.+++|+|+|+|||+|.++.+|||++|||+|+|++|++++|+|+||||+||+|.||++|
T Consensus 7 ~~tT~gI~V~V~~~y~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe~F 86 (139)
T 1xq4_A 7 PVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETF 86 (139)
T ss_dssp CCCSSCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCEE
T ss_pred ccccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCCce
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCceeeEEEEEEEEeCCCCCeeEEEEecceeeccCCC
Q 022883 240 EYSSACPLSTPSGRMEGDFEMKHVDRVGSQTFNVAIAPFSLSTMGD 285 (290)
Q Consensus 240 ~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip~F~L~~P~~ 285 (290)
+|+|+|+|+||.|+|+|+|+|+.. + |+.|+|.||+|+|++|..
T Consensus 87 ~YtSg~~L~Tp~G~M~G~y~m~~~--~-G~~F~v~Ip~F~L~~P~~ 129 (139)
T 1xq4_A 87 EYTSGCPLPTPIGTMRGTYHCVGE--N-GIPFEVPIAEFLLAMPRT 129 (139)
T ss_dssp EEEEEEEESSSEEEEEEEEEEEET--T-SCEEEEEEEEEEEECTTC
T ss_pred EEcCCcCcCCCceEEEEEEEEEeC--C-CCEEEEECCCeEcCCCCh
Confidence 999999999999999999999863 3 699999999999999975
No 5
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.42 E-value=0.0001 Score=54.46 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE 115 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~ 115 (290)
.+-++.|+.+|+.|++..+||+||++||+|++|+
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4568888888888888899999999999888554
No 6
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.38 E-value=9.2e-05 Score=54.72 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 122 RLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 122 ~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.|..+|++|.++.+||+||+|||+|..|+
T Consensus 28 ~Le~~M~~AA~~leFE~AA~lRD~I~~L~ 56 (63)
T 1e52_A 28 ELEGLMMQHAQNLEFEEAAQIRDQLHQLR 56 (63)
T ss_dssp HHHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999985
No 7
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.23 E-value=0.013 Score=59.49 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 119 PIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 119 ~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+.+|..+|++|.++++||+||+|||+|++|+.
T Consensus 627 ~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 627 VVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 346899999999999999999999999999963
No 8
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.12 E-value=0.013 Score=59.37 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhc
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~ 116 (290)
+-++.|+.+|++|.+..+||+||+|||+|++|+.
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~ 659 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKA 659 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999997764
No 9
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=93.74 E-value=0.28 Score=39.52 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=61.9
Q ss_pred cccCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCC
Q 022883 161 ATTLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNT 237 (290)
Q Consensus 161 ~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe 237 (290)
+++++|.|-....=.+.-|...+..|-=+|.|.|.|.++.++.|-.=..+-.+.+|+.-..++-.-.=..=.|.||+
T Consensus 2 ~~~d~v~V~At~k~~GS~s~~~k~~ytktFdV~vaNl~~~~idLsk~C~~a~~~~gkef~ldTVde~L~~g~lk~g~ 78 (106)
T 3nrf_A 2 AAPDAVMVFARQGDKGSVSVGDKHFRTQAFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTVDEELTADTLKPGA 78 (106)
T ss_dssp ---CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCSSSCEECTTCEEEEEETTSCEEEEEEECGGGGCSEECTTC
T ss_pred CCcCcEEEEeeccccccEEeCCeeEEEEEEEEEEecCCCCccccchhhheeeCcCCCEEEecccchhhhhccccCCC
Confidence 46899999999999999998888899999999999999999999999999999999876555522111244788886
No 10
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.54 E-value=0.013 Score=59.46 Aligned_cols=34 Identities=35% Similarity=0.459 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 118 EPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 118 d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
..+.+|..+|++|.++++||+||+|||+|++|+.
T Consensus 611 ~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~ 644 (664)
T 1c4o_A 611 ERIAELELAMWQAAEALDFERAARLRDEIRALEA 644 (664)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999975
No 11
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.48 E-value=0.014 Score=59.34 Aligned_cols=35 Identities=37% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhc
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~ 116 (290)
.+.++.|+.+|++|++..+||+||+|||+|++|+.
T Consensus 610 ~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~ 644 (664)
T 1c4o_A 610 RERIAELELAMWQAAEALDFERAARLRDEIRALEA 644 (664)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999996654
No 12
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=81.10 E-value=8.7 Score=32.22 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=63.9
Q ss_pred ccCCcEEEEEeEEecC---c--------ccC---CCCeeEEEEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCccc
Q 022883 162 TTLGIRVQVRSVYIED---R--------SQP---LKGQYFFAYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVI 227 (290)
Q Consensus 162 ~T~GI~V~V~~~y~~e---~--------S~p---~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVV 227 (290)
...+++|+|..+-... . ..| .++.-+..-.|+|+|.++.++..-.=.|.+.|++|+.-.... ...
T Consensus 9 ~~~~~evTVnsv~~~~~~e~~~~~~~~~~~p~~~~~G~~fviV~VTIeN~g~e~~~~s~~~F~L~d~dG~~~~~~~-~~~ 87 (159)
T 3cfu_A 9 KAGHTNFTVNKVDRVQKGEYMNVGGAVNEETKTIKDDEERLIIEVTMENIGEDSISYNFIGFDLRDKNDQSVRPVF-SIE 87 (159)
T ss_dssp EETTEEEEEEEEEEECSSCBEESSCC------CBCCCSEEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEE-CST
T ss_pred EECCEEEEEEEEEEcCCCceeecccccccCccccCCCCEEEEEEEEEEECCCCceeeCcccEEEEeCCCCEEecee-eec
Confidence 4467999987765432 1 334 566567899999999999999887778999999998543221 111
Q ss_pred CCceeecCCCceEEccccccccCceeeEEEEEEEEeCCCCC-eeEEEEecce
Q 022883 228 GEQPVILPNTSFEYSSACPLSTPSGRMEGDFEMKHVDRVGS-QTFNVAIAPF 278 (290)
Q Consensus 228 G~qPvL~PGe~F~Y~S~~~L~Tp~G~M~G~y~m~~~d~~gg-~~F~V~Ip~F 278 (290)
+. +..|.+. .|. |...|+|...|.... +. ..+.+..-|.
T Consensus 88 ~~------~~~l~~g---~L~-pG~kvtG~ivFeVP~--~~~k~~~L~y~p~ 127 (159)
T 3cfu_A 88 EK------GRILMGG---TLV-SGKKVTGVLSYVIPK--GEQKHYTLVYNPF 127 (159)
T ss_dssp TT------TTBCCEE---EEC-TTCEEEEEEEEEEST--TCGGGCEEEECHH
T ss_pred cc------CCccccc---ccC-CCCEEEEEEEEEECC--CCCccEEEEEecC
Confidence 11 1122211 222 667899999987522 22 2455555554
No 13
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=79.48 E-value=4.5 Score=34.73 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHH----------HHHHHhhhcCC
Q 022883 120 IFRLRRLMKEAVAEERFEDAA----------RYRDKLKEIAP 151 (290)
Q Consensus 120 v~~L~~~L~~AI~eEryE~AA----------~lRDei~eL~P 151 (290)
+..+...|.+++..++|+.|+ +|+++|++.+|
T Consensus 134 ~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik~we~ 175 (181)
T 3uo3_A 134 IQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKDWAP 175 (181)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 447778899999999999998 45566777776
No 14
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=76.40 E-value=4.2 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l 114 (290)
.+.++.+++||-.|-..+||+.+-.|..+++.|
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 356777778888777778888877777777644
No 15
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=76.33 E-value=2.8 Score=32.32 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccchHHH-HHHHHHHhhhhccCc-HHHHHHHHHHHHhhhhhH--HHHHHHHHhh
Q 022883 87 LLKQQMEVAAKTEDYKEA-ARIRDSLRSFEEEEP-IFRLRRLMKEAVAEERFE--DAARYRDKLK 147 (290)
Q Consensus 87 ~Lk~qL~~aV~~E~ye~A-A~LRdeIk~l~~~d~-v~~L~~~L~~AI~eEryE--~AA~lRDei~ 147 (290)
.+..-++..|+.+.|..+ ..+|+-|+.|++.+. +..|+..|.++++...-+ ++..++.+++
T Consensus 13 ~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~Sg~~~~~d~d~v~a~~~ 77 (88)
T 3kxe_C 13 HFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEESGFIEDFDFDAFIEERS 77 (88)
T ss_dssp HHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 466778888899999887 556999998886643 567888888887766533 3444444444
No 16
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.31 E-value=3.9 Score=39.29 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=28.4
Q ss_pred CCccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 74 ~~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
++..+-...+.++.++.+++.++..+||++|+.|+++++
T Consensus 392 ~p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~ 430 (468)
T 3pxg_A 392 TPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQ 430 (468)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 444555556677777777777777788888888888877
No 17
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=65.49 E-value=12 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhhhc
Q 022883 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (290)
Q Consensus 85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~ 116 (290)
+..+..++..||++|+||.-..|-++-+.|-.
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk 35 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELME 35 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999777664433
No 18
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=63.87 E-value=19 Score=30.34 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhccc-hHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022883 84 AYALLKQQMEVAAKTED-YKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDK 145 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~-ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDe 145 (290)
....++++|+.+-..++ -..-..|+.+|+ ..+..+...|.+++..++|+.|+.+-.+
T Consensus 97 e~me~rE~le~~~~~~d~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~~~d~~~A~~~~~k 154 (174)
T 3hho_A 97 EQMELREELESVTACADPEAALVAFDTKVT-----AMQRHYLAQLQGQLAQSEWLAAADQIRK 154 (174)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44455566666554444 222233444444 2334778889999999999999854433
No 19
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=61.10 E-value=18 Score=31.54 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhc------cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHH
Q 022883 84 AYALLKQQMEVAAKT------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRD 144 (290)
Q Consensus 84 cye~Lk~qL~~aV~~------E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRD 144 (290)
.+..+|.+|+-++.+ ++...+-..|++|.+|-.......++-..+.-|.++.+-+|-.+-.
T Consensus 9 ~~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilE 75 (191)
T 3frr_A 9 KAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILE 75 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777766655 7788888899999999998899999999999999988877765533
No 20
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=57.53 E-value=27 Score=28.07 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=47.1
Q ss_pred cccChHHHHHHHHHHHHHHHhc--cchHH--HHHHHHHHhhhh-------ccCcHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022883 77 SFLSRSQAYALLKQQMEVAAKT--EDYKE--AARIRDSLRSFE-------EEEPIFRLRRLMKEAVAEERFEDAARYRDK 145 (290)
Q Consensus 77 ~~~gc~~cye~Lk~qL~~aV~~--E~ye~--AA~LRdeIk~l~-------~~d~v~~L~~~L~~AI~eEryE~AA~lRDe 145 (290)
..+.+...++.++..|+.++.. ..+++ ...+.+++..|- =.+++.+-...|-+||...+|+.|-.+--.
T Consensus 7 ~~~~~~~~i~~l~~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~ 86 (118)
T 2yru_A 7 GVIESETLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRS 86 (118)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3457777899999999998874 22211 122223333222 245667777899999999999999987655
Q ss_pred hh
Q 022883 146 LK 147 (290)
Q Consensus 146 i~ 147 (290)
|-
T Consensus 87 l~ 88 (118)
T 2yru_A 87 LM 88 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 21
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=57.53 E-value=15 Score=29.67 Aligned_cols=26 Identities=4% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEeC
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITDA 214 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD~ 214 (290)
.++|++.|.+..+-+-+...|.|.+.
T Consensus 27 ~vtv~~~N~g~~p~~~m~Hn~vi~~~ 52 (128)
T 2iaa_C 27 EFTINLKHTGKLPKAAMGHNVVVSKK 52 (128)
T ss_dssp EEEEEEEECSCSCHHHHCBCCEEEET
T ss_pred EEEEEEEECCCCcccCCCceEEEccc
Confidence 67888999886655556788888763
No 22
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=56.90 E-value=17 Score=24.31 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 022883 107 IRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (290)
Q Consensus 107 LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL 149 (290)
.||.|+ .+..++..|-.+.+||.+-.|..+|+.|
T Consensus 6 ~~d~I~---------aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 6 SAANKD---------AIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHH---------HHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred hHHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 367777 7778899999999999999999998876
No 23
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=54.70 E-value=10 Score=36.40 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 120 IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 120 v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
+.+|......++..++|++|+.|++++.+|+
T Consensus 403 i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~ 433 (468)
T 3pxg_A 403 LDEVRKEKDAAVQSQEFEKAASLRDTEQRLR 433 (468)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 3466666677788999999999999988765
No 24
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=53.33 E-value=42 Score=28.13 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHH
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRD 144 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRD 144 (290)
....++++|+.+-..++-..-..|+.+++ ..+..+...|.+++..++++.|+.+-.
T Consensus 94 e~me~rE~lee~~~~~d~~~l~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~A~~~~~ 149 (171)
T 1fpo_A 94 EQLELREELDEIEQAKDEARLESFIKRVK-----KMFDTRHQLMVEQLDNETWDAAADTCR 149 (171)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34555666665544344333344444444 233467788889999999999984433
No 25
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=50.50 E-value=17 Score=29.25 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEe
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITD 213 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD 213 (290)
.++|++.|.+..+..-+...|.|.+
T Consensus 28 ~vtv~~~N~g~~p~~~m~H~~vi~~ 52 (128)
T 1nwp_A 28 TFTVELTHSGSLPKNVMGHNLVISK 52 (128)
T ss_dssp EEEEEEEECSSCCHHHHCBCCEEEE
T ss_pred EEEEEEEECCCCcccCCCceEEEcc
Confidence 6788999988665555677888875
No 26
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=49.74 E-value=46 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHhhhh---ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 90 QQMEVAAKTEDYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 90 ~qL~~aV~~E~ye~AA~LRdeIk~l~---~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
.+|..|+..++++....+--+||-.- +-.++..+...|+++...+..+....+.+.|..
T Consensus 49 ~~L~~A~~~~D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~~L~~ 110 (116)
T 1sr2_A 49 KRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDS 110 (116)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788888899999999888888644 577888999999999999888777666665543
No 27
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=49.23 E-value=65 Score=22.52 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
....+...-..+.+.++|++|..+-++...+...++. -+...-......++|++|..+-+++.++.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-LYSNRAACYTKLLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH-HHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4455555555666777888887776665544433321 111222223455667777766666666655
No 28
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=48.39 E-value=97 Score=24.28 Aligned_cols=69 Identities=16% Similarity=0.015 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCc---------------HHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP---------------IFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~---------------v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
...+.+...=..+.+.++|++|..+-++...+...++ ..-+...=...+..++|++|...-+++-
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3455555666667778999999998777766655555 1111122223356678888888777777
Q ss_pred hcCC
Q 022883 148 EIAP 151 (290)
Q Consensus 148 eL~P 151 (290)
++.|
T Consensus 116 ~~~p 119 (198)
T 2fbn_A 116 KIDK 119 (198)
T ss_dssp HHST
T ss_pred HhCc
Confidence 7766
No 29
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=48.03 E-value=73 Score=25.63 Aligned_cols=57 Identities=12% Similarity=0.274 Sum_probs=40.1
Q ss_pred EEEEEEEEECCCCcEEEeec-----eEEEEeCCCCEEeee--eCcccCC----ceeecCCCceEEccccc
Q 022883 188 FAYRVRITNNSERPVQLLRR-----HWIITDANGKTENIL--GVGVIGE----QPVILPNTSFEYSSACP 246 (290)
Q Consensus 188 FaY~IrI~N~s~~~VQLlsR-----hW~ItD~~G~~~eV~--G~GVVG~----qPvL~PGe~F~Y~S~~~ 246 (290)
..+.++|.|.++.+|.|.-+ -..|.|.+|+ +|. ..|=-=. .=.|.||++-.|.=--+
T Consensus 20 v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~--~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~ 87 (120)
T 3isy_A 20 IKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHK--ERYRYSKEKMFTQAFQNLTLESGETYDFSDVWK 87 (120)
T ss_dssp EEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCC--EEEETTTTCCCCCCCEEEEECTTCEEEEEEEES
T ss_pred EEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCC--EEEEccccchhhhhhceEEECCCCEEEEEEEeC
Confidence 47788999999999988754 4777888885 444 4443333 33789999888875444
No 30
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.58 E-value=21 Score=23.93 Aligned_cols=22 Identities=41% Similarity=0.339 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHhhhhhHHHH
Q 022883 119 PIFRLRRLMKEAVAEERFEDAA 140 (290)
Q Consensus 119 ~v~~L~~~L~~AI~eEryE~AA 140 (290)
.+..|+..|+-|-.+=+||-||
T Consensus 21 elknlkehlkfakaelefelaa 42 (46)
T 3he4_B 21 ELKNLKEHLKFAKAELEFELAA 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHh
Confidence 3458888999998888888876
No 31
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=45.44 E-value=76 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=9.4
Q ss_pred HhhhhhHHHHHHHHHhhhcCC
Q 022883 131 VAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 131 I~eEryE~AA~lRDei~eL~P 151 (290)
...++|++|..+=.++-++.|
T Consensus 50 ~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 50 YATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhccHHHHHHHHHHHHHHCC
Confidence 344445555444444444443
No 32
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=43.55 E-value=52 Score=25.76 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=45.9
Q ss_pred ccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhh------ccCcHHHHHHHHHHHHhhhhh-HHHHHHHHHhhh
Q 022883 78 FLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFE------EEEPIFRLRRLMKEAVAEERF-EDAARYRDKLKE 148 (290)
Q Consensus 78 ~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~------~~d~v~~L~~~L~~AI~eEry-E~AA~lRDei~e 148 (290)
.++..+++..+..+|+.++..++.+....+-.+++.+. ....+......|..--.+++. ..|..|.+.=+.
T Consensus 7 ~M~~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 7 GMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp SSCSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 34457899999999999999888888888877777664 334445555566554333333 333344444444
No 33
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=43.20 E-value=36 Score=23.59 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
++...++.-|++|-+..+|++.+.|..-++
T Consensus 8 EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~ 37 (48)
T 3v1a_A 8 QQIKNIHSFIHQAKAAGRMDEVRTLQENLH 37 (48)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 344455555555555555555555555555
No 34
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=43.17 E-value=1e+02 Score=25.21 Aligned_cols=60 Identities=10% Similarity=0.207 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcc--chHHHHHHHHHHhhhh---ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 88 LKQQMEVAAKTE--DYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 88 Lk~qL~~aV~~E--~ye~AA~LRdeIk~l~---~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
.=.+|..|++.+ |+++..++--.||..- +...+..+...|+.+...++.+.+..+-.+|+
T Consensus 56 ~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 56 ILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777777 8888877777777554 46778888899999888888776665444433
No 35
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=43.04 E-value=99 Score=24.11 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhh---ccCcHHHHHHHHHHHHhhhhh-----HHHHHHHHHhhhc
Q 022883 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERF-----EDAARYRDKLKEI 149 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~---~~d~v~~L~~~L~~AI~eEry-----E~AA~lRDei~eL 149 (290)
..-...|+.|+..+++++...+--+|+-.- +...+..+...|+++.+.+.. +....|.|+|..+
T Consensus 34 ~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v 105 (119)
T 3myf_A 34 PETVEKIQTALGQNDQATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKV 105 (119)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344567888888899998888877777655 456677888889999887753 4455677776654
No 36
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=42.06 E-value=16 Score=29.46 Aligned_cols=26 Identities=4% Similarity=0.208 Sum_probs=18.6
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEeC
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITDA 214 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD~ 214 (290)
.++|++.|.+..+-.-+...|.|.+.
T Consensus 28 ~vtv~~~N~g~~p~~~m~H~~vi~~~ 53 (129)
T 2ccw_A 28 QFTMHLKHVGKMAKVAMGHNLVLTKD 53 (129)
T ss_dssp EEEEEEEECSCCCHHHHCBCCEEEEG
T ss_pred EEEEEEEECCCcccccCcceEEEcCc
Confidence 57888999886544456777888753
No 37
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=41.98 E-value=22 Score=29.08 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhcc
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEE 117 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~ 117 (290)
.+.++.++.+|..|..++|-+.-+++.+||+.|..+
T Consensus 16 ~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~ 51 (123)
T 2lf0_A 16 SDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAE 51 (123)
T ss_dssp HHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456888888999999999999999999999965543
No 38
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=41.89 E-value=20 Score=32.39 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEc
Q 022883 190 YRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYS 242 (290)
Q Consensus 190 Y~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~ 242 (290)
-+|++.|.-+.+. +=||- |-......+||--.|+.+.||++|+|.
T Consensus 68 v~v~~~N~l~~~~---siH~H-----G~~~~~~~DG~~~~~~~i~PG~t~~Y~ 112 (299)
T 3t9w_A 68 LEIDLVNTTDRVL---SLHPH-----GVDYDVNSDGTLMNGSAVMPGQTRRYT 112 (299)
T ss_dssp EEEEEEECSSSCB---CCEES-----SSBCCGGGSCCTTTTCCBCTTCEEEEE
T ss_pred EEEEEEECCCCCc---cEEeC-----CcccCCccCCCccccCccCCCCeEEEE
Confidence 3677778765553 44774 322223456665567789999999986
No 39
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=41.33 E-value=82 Score=21.73 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 121 FRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 121 ~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.-++.-+++|-...|||+.+.|..=|++|.
T Consensus 11 ~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~ 40 (48)
T 3v1a_A 11 KNIHSFIHQAKAAGRMDEVRTLQENLHQLM 40 (48)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 378888999999999999999998888874
No 40
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=41.02 E-value=6.9 Score=33.31 Aligned_cols=26 Identities=12% Similarity=0.402 Sum_probs=19.8
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEeC
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITDA 214 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD~ 214 (290)
.++|++.|.+..++.-+...|.|.+.
T Consensus 68 ~Vtv~~~N~g~~p~~~m~Hn~vi~~~ 93 (167)
T 3ay2_A 68 EFTITLKHTGTQPKASMGHNLVIAKA 93 (167)
T ss_dssp SEEEEEEECSCSCHHHHCBCCEEEEG
T ss_pred EEEEEEEECCCCccccccceEEeccC
Confidence 46788899987766667788888763
No 41
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=40.93 E-value=1.1e+02 Score=22.67 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=29.7
Q ss_pred ChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Q 022883 80 SRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (290)
Q Consensus 80 gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l 114 (290)
--.+++..++.-|++|-+..+|++.+.|..-+++|
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL 58 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQL 58 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34578999999999999999999999998888833
No 42
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=40.71 E-value=1.2e+02 Score=26.56 Aligned_cols=77 Identities=6% Similarity=-0.054 Sum_probs=48.2
Q ss_pred CCccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 74 SARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 74 ~~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+...+..-+...+.+-..-..+++.++|++|..+=+++..+...+ ..-+...-......++|++|..+-.++.++.|
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 444555556677777778888888899999999877766554333 22333344455667788888877777777766
No 43
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=39.68 E-value=1e+02 Score=26.75 Aligned_cols=60 Identities=7% Similarity=0.005 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhc------cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHH
Q 022883 84 AYALLKQQMEVAAKT------EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYR 143 (290)
Q Consensus 84 cye~Lk~qL~~aV~~------E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lR 143 (290)
-|..+|.+|+-++.+ ++...+-..|++|.+|-..-....++-..+.-|.++.+-+|-.+-
T Consensus 8 ~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~Eil 73 (193)
T 3ggy_A 8 FTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEIL 73 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666555 777888888999999999889999999999999998887776553
No 44
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=39.40 E-value=1e+02 Score=21.98 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.+...=..+.+.++|++|...=++.-.+...++.... ..=......++|++|...-+++-++.|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-NRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34444455566778888887776665555544432211 112233456677777777777666666
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=38.91 E-value=1.2e+02 Score=22.80 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.+...=..+++.++|++|...=++.-.+...++.. +...=...+..++|++|...-++.-++.|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY-LSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 344444444455566666655544444343333221 11111122344455555554444444444
No 46
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=38.33 E-value=92 Score=21.73 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
++...++.-|.+|-+..+|++.+.|..-++
T Consensus 9 EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLr 38 (51)
T 1yzm_A 9 QQIHNITSFIRQAKAAGRMDEVRTLQENLR 38 (51)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 456667777777777777777777766666
No 47
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.52 E-value=51 Score=28.21 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.3
Q ss_pred HHHHHh
Q 022883 107 IRDSLR 112 (290)
Q Consensus 107 LRdeIk 112 (290)
||++|.
T Consensus 90 Lr~ql~ 95 (175)
T 3lay_A 90 LRQQLI 95 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
No 48
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=37.50 E-value=66 Score=24.78 Aligned_cols=59 Identities=7% Similarity=0.101 Sum_probs=38.9
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhh---ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 88 LKQQMEVAAKTEDYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 88 Lk~qL~~aV~~E~ye~AA~LRdeIk~l~---~~d~v~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
+-.+|+.++..++++...++--.||..- +-..+..+.+.|+.+....+.+.+..+-++|
T Consensus 43 ~l~~L~~a~~~~d~~~~~~~aH~LKGsa~~lG~~~l~~~~~~lE~~~~~~~~~~~~~~~~~l 104 (125)
T 2a0b_A 43 YVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEM 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCHhHHHHHHHHH
Confidence 3345677777788888777777776544 4667777778887777766665554443333
No 49
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=35.93 E-value=84 Score=30.51 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=41.1
Q ss_pred ccCCcEEEEEeEEecCcccCCCCeeEEEE-----------------EEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeC
Q 022883 162 TTLGIRVQVRSVYIEDRSQPLKGQYFFAY-----------------RVRITNNSERPVQLLRRHWIITDANGKTENILGV 224 (290)
Q Consensus 162 ~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY-----------------~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~ 224 (290)
.+.-+.+++.+.-+.- .+....-+|+| .|++.|.-+++ .+=||.=.... -.-+
T Consensus 49 ~~~~~~L~~~~~~~~~--~~G~~~~~~~~NG~~PGPtIr~~~Gd~v~v~v~N~l~~~---tsiHwHGl~~~-----~~~D 118 (481)
T 3zx1_A 49 NIFHATLEIKENHIEL--IKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEA---TTIHWHGVPVP-----PDQD 118 (481)
T ss_dssp TEEEEEEEEEEEEECC--STTCCEEEEEETTBSSCCBEEEETTCEEEEEEEECSSSC---BCCEEETCCCC-----GGGS
T ss_pred CeEEEEEEEEEEEEEc--cCCcEEEEEEECCCCCCceEEEECCcEEEEEEEeCCCCC---eeEEecCcccC-----CccC
Confidence 3333455555544432 23345668888 56667765544 35588644322 2335
Q ss_pred cccCCceeecCCCceEEccc
Q 022883 225 GVIGEQPVILPNTSFEYSSA 244 (290)
Q Consensus 225 GVVG~qPvL~PGe~F~Y~S~ 244 (290)
||. |+-|.||++|+|.=-
T Consensus 119 G~p--q~~I~PG~s~~Y~f~ 136 (481)
T 3zx1_A 119 GSP--HDPILAGEERIYRFE 136 (481)
T ss_dssp CCT--TSCBCTTCEEEEEEE
T ss_pred CCc--cCcCCCCCeEEEEEe
Confidence 653 677899999888643
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.13 E-value=92 Score=25.36 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhc
Q 022883 81 RSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEI 149 (290)
Q Consensus 81 c~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL 149 (290)
|.+....|+.-|..-..+. -..-.+|++||+ .|...|++|.+ +.-+||.+...|
T Consensus 51 CNqTV~tL~~SL~~ekaq~-q~~vqeLqgEI~---------~Lnq~Lq~a~a-----e~erlr~~~~~~ 104 (121)
T 3mq7_A 51 ANHTVMALMASLDAEKAQG-QKKVEELEGEIT---------TLNHKLQDASA-----EVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHH-----HHHHHHhhchhh
Confidence 4444555555555433333 223344555555 77777877764 445777776654
No 51
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=34.50 E-value=31 Score=31.26 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=28.3
Q ss_pred EEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEcc
Q 022883 190 YRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSS 243 (290)
Q Consensus 190 Y~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S 243 (290)
-+|++.|.-+.+. +=||. |-......+||-..|+-|.||++|+|.=
T Consensus 52 v~v~~~N~l~~~~---siH~H-----G~~~~~~~dG~~~~~~~i~PG~~~~Y~~ 97 (313)
T 3tas_A 52 LHIEFENTMDVPV---SLHVH-----GLDYEISSDGTKQSRSDVEPGGTRTYTW 97 (313)
T ss_dssp EEEEEEECSSSCB---CCEES-----SSBCCGGGSCSTTTTCCBCTTCEEEEEE
T ss_pred EEEEEEECCCCCc---cEeec-----CCcCCccCCCCccccCCcCCCCEEEEEE
Confidence 3677777765552 44774 3222233456545666689999998863
No 52
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=33.62 E-value=65 Score=25.54 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=31.0
Q ss_pred CceeecCCCceEEccccccc--cCceeeEEEEEEEEeCCCCCeeEEEEec
Q 022883 229 EQPVILPNTSFEYSSACPLS--TPSGRMEGDFEMKHVDRVGSQTFNVAIA 276 (290)
Q Consensus 229 ~qPvL~PGe~F~Y~S~~~L~--Tp~G~M~G~y~m~~~d~~gg~~F~V~Ip 276 (290)
.-| |.+|+.|.|+-..++. .|.++....+.+.+ ++++..+-+.||
T Consensus 79 ~CP-l~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d--~~~~~l~C~~~~ 125 (130)
T 1nep_A 79 RCP-IEKDKTYNYVNKLPVKNEYPSIKVVVEWELTD--DKNQRFFCWQIP 125 (130)
T ss_dssp CSS-BCTTCEEEEEEEEECCTTSCSSEEEEEEEEEC--TTSCEEEEEEEE
T ss_pred cCc-ccCCcEEEEEEEeEecccCCCccEEEEEEEEc--CCCCEEEEEEEe
Confidence 566 6789999999766644 68889988888874 434344444443
No 53
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=33.22 E-value=1.5e+02 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred cCccceecccCCcEEEEEeEEecCcccCCCCeeEEEE
Q 022883 154 LLKCLSDATTLGIRVQVRSVYIEDRSQPLKGQYFFAY 190 (290)
Q Consensus 154 ~~~~~s~~~T~GI~V~V~~~y~~e~S~p~~~~Y~FaY 190 (290)
++.......+.-++|++++.-..-... ....-+|.|
T Consensus 23 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~t~~~gy 58 (612)
T 3gyr_A 23 VLRPASDEVTRETEIALRPTWVRLHPQ-LPPTLMWGY 58 (612)
T ss_dssp EECCCCSCTTBCEEEEEEEEEECSCTT-SCCEEEEEE
T ss_pred ccCCccCCCcceEEEEEEEEEEeecCC-CCcceEEEE
Confidence 344444445566788887766544322 124568999
No 54
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=33.13 E-value=93 Score=26.52 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcH-------HHHHHHHHHHHhhhh-hHHHH
Q 022883 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI-------FRLRRLMKEAVAEER-FEDAA 140 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v-------~~L~~~L~~AI~eEr-yE~AA 140 (290)
-.|.++++.++..+-|+.|.-+-+-+..+..+++- .+++-.+.++.-.++ |-.|.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~ 83 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAV 83 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 35889999999999999999999999999876553 445566666666555 55555
No 55
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=33.11 E-value=1.6e+02 Score=22.38 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
..+.+-..=..+.+.++|++|..+=+++-.+...++.... ..=......++|++|...=+++-++.|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFL-GLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3444444445556678888888776666655555443221 111233456777888777777777766
No 56
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=33.06 E-value=34 Score=26.70 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 122 RLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 122 ~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
+-+++|.+||++|+.|. |||++-.
T Consensus 67 eemdelreavekedwen---lrdelld 90 (114)
T 2p06_A 67 EEMDELREAVEKEDWEN---LRDELLD 90 (114)
T ss_dssp HHHHHHHHHHHTTCHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 55788899999999874 7888655
No 57
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=32.51 E-value=1.9e+02 Score=23.15 Aligned_cols=59 Identities=2% Similarity=0.027 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcc--chHHHHHHHHHHhhhh---ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 88 LKQQMEVAAKTE--DYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 88 Lk~qL~~aV~~E--~ye~AA~LRdeIk~l~---~~d~v~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
.=.+|..|+..+ |++....+--.||.-- +...+..+...|+++...++.+.+..+-+++
T Consensus 57 ~l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l 120 (149)
T 1yvi_A 57 IINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVV 120 (149)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344567777776 7888777777777544 5677788888888888888877665444443
No 58
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=32.38 E-value=1.2e+02 Score=20.58 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=37.5
Q ss_pred HHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 94 ~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+++.++|++|...=++..++...++..-+...=......++|++|...=.++-++.|
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4556789999988877766665555430111111234566788999888888777777
No 59
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=32.18 E-value=1.5e+02 Score=21.88 Aligned_cols=68 Identities=16% Similarity=0.040 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.-+.++.+=..+.+.++|++|...=++.-++...++.... ..=.-....++|++|...=++.-++.|
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYS-NRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 44455666666777888888888876665555544443222 111223455677777777666666766
No 60
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=31.93 E-value=2.3e+02 Score=23.76 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHH----HHHHHHHH-HhhhhhHHHHHHHHHhhhc
Q 022883 82 SQAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFR----LRRLMKEA-VAEERFEDAARYRDKLKEI 149 (290)
Q Consensus 82 ~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~----L~~~L~~A-I~eEryE~AA~lRDei~eL 149 (290)
...+..|..++..++..++|++|..+-+++......++... ....|-.. ....+|++|..+=.++-++
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 35678888899999999999999999888776555444422 11122222 2334788888665555544
No 61
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=31.92 E-value=1.3e+02 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
+++..++.-|.+|-+..+|++.+.|..-++
T Consensus 16 EQi~~I~~yI~qAk~~~R~DEV~~Le~NLr 45 (59)
T 1z0j_B 16 QQIDNIKAYIFDAKQCGRLDEVEVLTENLR 45 (59)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555666666666666666555555
No 62
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=31.91 E-value=1.5e+02 Score=21.83 Aligned_cols=68 Identities=12% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
...+.+-..=..+++.++|++|..+=+++-.+...++.... ..=......++|++|...=++.-++.|
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL-GLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHH-HHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34444545555666778888888887666655554443221 111234566778888877777777776
No 63
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.79 E-value=1.4e+02 Score=21.24 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcH-HHHHH-HHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPI-FRLRR-LMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v-~~L~~-~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
...+.+...-..+++.++|++|..+=++...+...++. ..+.. .-.-.....+|++|..+-.++.++.|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence 34566666667777889999998887666655443211 22222 22234567788888877777777766
No 64
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=31.11 E-value=1.9e+02 Score=22.63 Aligned_cols=67 Identities=12% Similarity=-0.029 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
..+.+-..=..+.+.++|++|..+=++.-.+...++..... .=......++|++|...=++.-++.|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~-lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG-LAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34444444445556688888888877777666555543221 11233456788888888777777877
No 65
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.98 E-value=1.2e+02 Score=24.24 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhhh
Q 022883 120 IFRLRRLMKEAVAEE 134 (290)
Q Consensus 120 v~~L~~~L~~AI~eE 134 (290)
+.+|+..|..++..+
T Consensus 91 iaeLKrqLAd~va~g 105 (107)
T 2k48_A 91 LGELKRQLADLVAAQ 105 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 336666666666544
No 66
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.72 E-value=76 Score=22.16 Aligned_cols=29 Identities=14% Similarity=0.471 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 122 RLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 122 ~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
-++.-+++|-...||++.+-|-.=+++|.
T Consensus 13 ~I~~~I~qAk~~~r~DEV~~Le~NLrEL~ 41 (51)
T 1yzm_A 13 NITSFIRQAKAAGRMDEVRTLQENLRQLQ 41 (51)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 78888999999999999998887777764
No 67
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.30 E-value=1e+02 Score=21.03 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHH-HHHHHHHhhhcC
Q 022883 104 AARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFED-AARYRDKLKEIA 150 (290)
Q Consensus 104 AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~-AA~lRDei~eL~ 150 (290)
.|-||.+|..|+. +.|+---.+...|+ .|.|||+|..|+
T Consensus 5 naylrkkiarlkk--------dnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKK--------DNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh--------hhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 4567777773332 12222223333444 357889888775
No 68
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=30.08 E-value=1.3e+02 Score=25.08 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
..++.+..+|..++..++++.|+.+-.+++
T Consensus 127 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~ 156 (174)
T 3hho_A 127 AMQRHYLAQLQGQLAQSEWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666677777788899999998877776
No 69
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=29.86 E-value=1.8e+02 Score=22.76 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.-+.+...=...+..++|++|..+=++...+. .+ ..-+...-......++|++|..+-.++.++.|
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 44566666677788899999999877766666 33 33334444456677889999877777666654
No 70
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=29.80 E-value=39 Score=31.14 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=28.6
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceEEcc
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFEYSS 243 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~Y~S 243 (290)
.++|++.|..+.+. +=||. |-.....-+||--.|+.|.||++|+|.=
T Consensus 86 ~v~v~~~N~l~~~~---sih~H-----G~~~~~~~DG~~~t~~~I~PG~~~~y~f 132 (343)
T 3cg8_A 86 TLHIEFTNTMDVRA---SLHVH-----GLDYEISSDGTAMNKSDVEPGGTRTYTW 132 (343)
T ss_dssp EEEEEEEECSSSCB---CCEES-----SSBCCGGGSCCTTTTCSBCTTCEEEEEE
T ss_pred EEEEEEEECCCCCe---eEEec-----CcccCCcCCCcccccccccCCCEEEEEE
Confidence 46788888876553 34553 2222133455543567789999888763
No 71
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=29.50 E-value=1.3e+02 Score=23.96 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=42.1
Q ss_pred cccChHHHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhh---ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 77 SFLSRSQAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 77 ~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~L----RdeIk~l~---~~d~v~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
..|.+=+.+..+..+|-.|.+.+++++-..+ ...|+.|. ...++.......+..+-..-.+..+.+|+.+
T Consensus 6 ~ll~~Yq~i~~lS~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~IL~nDaeIr~Ll 82 (122)
T 3a7m_A 6 EFINRWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKGLL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455666788899999999999999987776 22344443 3333333333334444444455556666654
No 72
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=28.56 E-value=47 Score=29.83 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=28.5
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEe----CCCCEEeeeeC-cccCCceeecCCCceEEccc
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITD----ANGKTENILGV-GVIGEQPVILPNTSFEYSSA 244 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD----~~G~~~eV~G~-GVVG~qPvL~PGe~F~Y~S~ 244 (290)
.++|++.|..+.+ .+=||.=.. .+|.. .+.|. +|--.+..|.||++|+|.=-
T Consensus 69 ~v~v~~~N~l~~~---~siH~HGl~~~~~~dG~~-~~dg~~~~~~~~~~I~PG~~~~Y~f~ 125 (306)
T 1sdd_A 69 IMKVHFKNKAHKP---LSIHAQGIKYSKFSEGAS-YSDHTLPMEKMDDAVAPGQEYTYEWI 125 (306)
T ss_dssp EEEEEEEECSSSC---BCCEEESSCCCTTTSCCC-SCCCCCHHHHTTTCBCTTCEEEEEEE
T ss_pred EEEEEEEECCCCc---ccEeecceecccccCCCc-cCCCCcccccCCCccCCCCeEEEEEE
Confidence 5789999976544 355776322 22211 11111 11122566899998888643
No 73
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=27.92 E-value=92 Score=23.27 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=8.6
Q ss_pred ceeecCCCceEEc
Q 022883 230 QPVILPNTSFEYS 242 (290)
Q Consensus 230 qPvL~PGe~F~Y~ 242 (290)
+..+.||++++|+
T Consensus 70 ~~~i~pG~~~~~~ 82 (112)
T 1iby_A 70 QEVIKAGETKTIS 82 (112)
T ss_dssp EEEECTTCEEEEE
T ss_pred eeEeCCCCEEEEE
Confidence 5567888765554
No 74
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.88 E-value=1.6e+02 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhc
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEE 116 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~ 116 (290)
+-++.+=+.|+..|...+||+|..+-++++.+-.
T Consensus 16 ~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~ 49 (235)
T 2d2s_A 16 KFLDEGVEEIDIELARLRFESAVETLLDIESQLE 49 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3466677889999999999999999888876554
No 75
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=27.79 E-value=2.8e+02 Score=24.30 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCc--------------HHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP--------------IFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~--------------v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
...+...=..+.+.++|++|...=++...+...++ ..-+...=.-.+..++|++|...-+++-++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33444444555667999999988666666665553 2222222233456677888887777777777
Q ss_pred C
Q 022883 151 P 151 (290)
Q Consensus 151 P 151 (290)
|
T Consensus 227 p 227 (336)
T 1p5q_A 227 S 227 (336)
T ss_dssp T
T ss_pred C
Confidence 6
No 76
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=27.77 E-value=83 Score=23.28 Aligned_cols=29 Identities=14% Similarity=0.471 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 122 RLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 122 ~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
-++.-+++|-+..||++.+-|-.-|++|.
T Consensus 31 ~I~~yI~qAk~~~r~DEV~tLe~NLrEL~ 59 (69)
T 1z0k_B 31 NITSFIRQAKAAGRMDEVRTLQENLRQLQ 59 (69)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 67778888889999999888777777764
No 77
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=27.65 E-value=1.1e+02 Score=23.72 Aligned_cols=67 Identities=4% Similarity=0.071 Sum_probs=33.9
Q ss_pred CccccChHHHHHHHHHHHHHHHhccchHH--HHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 75 ARSFLSRSQAYALLKQQMEVAAKTEDYKE--AARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~aV~~E~ye~--AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
-...+.-....+.|=.+++.+|+.+.+.. ...-|.+|+ .+...|++++..+.-.+...|+..+++|+
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~---------~~i~el~~~L~~~~~ad~e~ik~k~~eL~ 81 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIE---------DKCDEILKWLDSNQTAEKEEFEHQQKDLE 81 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHH---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHH---------HHHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 34444455666666667777775432321 111244444 55555666665432224445666666654
No 78
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.63 E-value=1.5e+02 Score=25.25 Aligned_cols=12 Identities=8% Similarity=-0.011 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhc
Q 022883 105 ARIRDSLRSFEE 116 (290)
Q Consensus 105 A~LRdeIk~l~~ 116 (290)
...|.|+.+|-.
T Consensus 95 ~akr~EL~aL~~ 106 (175)
T 3lay_A 95 ISKRYEYNALLT 106 (175)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 334555555543
No 79
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=27.59 E-value=25 Score=20.50 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHhhhc
Q 022883 134 ERFEDAARYRDKLKEI 149 (290)
Q Consensus 134 EryE~AA~lRDei~eL 149 (290)
.||.+||-||.++.+-
T Consensus 4 nrydqaatlrakmekr 19 (23)
T 3syn_E 4 NRYDQAATLRAKMEKR 19 (26)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4667777777666543
No 80
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=27.49 E-value=1.9e+02 Score=23.35 Aligned_cols=72 Identities=22% Similarity=0.151 Sum_probs=44.3
Q ss_pred ccccChHHHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhh---ccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 022883 76 RSFLSRSQAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFE---EEEPIFRLRRLMKEAVAEERFEDAARYRDKLK 147 (290)
Q Consensus 76 ~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~L----RdeIk~l~---~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~ 147 (290)
...|.+=+.+..+..+|-.|.+.+++++-..+ ...++.|. ...++......-+..+-..-.+..+.+|+.+.
T Consensus 18 ~~ll~~Yq~Il~lS~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~ 96 (126)
T 3h3m_A 18 APVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLAL 96 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35677777888899999999999999987776 33344443 22333333333334444444555666666643
No 81
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=27.16 E-value=1.3e+02 Score=25.44 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
.++.+..+|..++..+++++|+.+-.+++
T Consensus 133 ~~~~~~~~l~~~~~~~d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 133 RIQDIEAQLGQCYNDKDYAAAVKLTVELK 161 (181)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34555566667777788888877655555
No 82
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=26.33 E-value=1.9e+02 Score=21.09 Aligned_cols=56 Identities=18% Similarity=0.033 Sum_probs=23.4
Q ss_pred HHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 95 aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+++.+++++|...=++.-++...++-.... .=.-....+++++|...=.+.-++.|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKEPEREEAWRS-LGLTQAENEKDGLAIIALNHARMLDP 82 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555666555544443333332221111 11112334555555555445445544
No 83
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=26.05 E-value=1.8e+02 Score=22.85 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhhh---ccCcHHHHHHHHHHHHhhhhh-----HHHHHHHHHhhhc
Q 022883 86 ALLKQQMEVAAKTEDYKEAARIRDSLRSFE---EEEPIFRLRRLMKEAVAEERF-----EDAARYRDKLKEI 149 (290)
Q Consensus 86 e~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~---~~d~v~~L~~~L~~AI~eEry-----E~AA~lRDei~eL 149 (290)
..-...|+.++..+++++...+--+|+-.- +...+..+-..|+++.+.+.. .....|.|+|..+
T Consensus 43 ~~~~~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v 114 (123)
T 3iqt_A 43 PEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNV 114 (123)
T ss_dssp HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 334567778888888888888777777554 455667888889998887653 3445677776664
No 84
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=25.74 E-value=1.4e+02 Score=24.59 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=41.0
Q ss_pred EEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCce---eecCCCc-eEEccccc--cccCceeeEEE--------
Q 022883 192 VRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQP---VILPNTS-FEYSSACP--LSTPSGRMEGD-------- 257 (290)
Q Consensus 192 IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qP---vL~PGe~-F~Y~S~~~--L~Tp~G~M~G~-------- 257 (290)
|+|+|.++..+.|-. |+|...-+.. .++=.+| +|.||+. -.|+.+.- -..|.-.++..
T Consensus 40 V~L~N~s~~~~~LgG--W~L~r~v~g~------~~~y~FP~~~~L~pg~~VtVwa~g~g~~~~pp~dlv~~~~~sWg~g~ 111 (144)
T 3jt0_A 40 IRLKNTSEQDQPMGG--WEMIRKIGDT------SVSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNSWGTGE 111 (144)
T ss_dssp EEEEECSSSCEECTT--CEEEEEETTE------EEEEECCTTCEECTTCEEEEEETTSCCCCBTTTEEEETTCCCCCTTC
T ss_pred EEEEECCCCceecCC--cEEEEEeCCC------ceEEEcCCCcEECCCCEEEEEECCCCCCCCCChhheeccccccCCCC
Confidence 899999998887744 8886432211 1223444 7899984 45664443 22333222211
Q ss_pred -EEEEEeCCCCCeeEEEEecceeeccCCCCCC
Q 022883 258 -FEMKHVDRVGSQTFNVAIAPFSLSTMGDDSD 288 (290)
Q Consensus 258 -y~m~~~d~~gg~~F~V~Ip~F~L~~P~~~~~ 288 (290)
-+-..+|.. |+..-...-+|....+.++++
T Consensus 112 ~~~T~L~n~~-GEevA~~~~~~~~~~~~~~~~ 142 (144)
T 3jt0_A 112 DVKVILKNSQ-GEEVAQRSTVFKTTIPEEEEE 142 (144)
T ss_dssp CCEEEEECTT-SCEEEEEECC-----------
T ss_pred CcEEEEECCC-CCEEEEEEEEEeccccccccc
Confidence 122233544 566656666666665555443
No 85
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.70 E-value=1e+02 Score=24.85 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHhc---cchHHHHHH-HHHHhhhhccCcHHHHHHHHHHHHh-----hhhhHHHHHHHHHhhh
Q 022883 81 RSQAYALLKQQMEVAAKT---EDYKEAARI-RDSLRSFEEEEPIFRLRRLMKEAVA-----EERFEDAARYRDKLKE 148 (290)
Q Consensus 81 c~~cye~Lk~qL~~aV~~---E~ye~AA~L-RdeIk~l~~~d~v~~L~~~L~~AI~-----eEryE~AA~lRDei~e 148 (290)
..++|+.=-.-|..|++- ++-+.|..+ |+-|.+| ...|..-+. .+.+++|-+|++++++
T Consensus 15 ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eL---------e~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 15 IREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHL---------LRGISISSKESEHTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------HHHHSSCCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH---------HHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 445666666666666665 455566555 7777733 333332221 4556677776666655
No 86
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=25.43 E-value=1.6e+02 Score=19.89 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC
Q 022883 87 LLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (290)
Q Consensus 87 ~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P~ 152 (290)
.+...=....+.++|++|...=++.-++...++.. +...=......++|++|...-.+.-++.|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG-YSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 33344455667799999999877766665555432 222223456778899999888888888773
No 87
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.32 E-value=2.8e+02 Score=23.67 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHH-HHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 92 MEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRL-MKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 92 L~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~-L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+-+.+.+++++|.+.-+++.++...+....+... +.-....++|++|..+=+++-++.|
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p 197 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS 197 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC
Confidence 33455667888887776666555544444444322 2233445777777777777666666
No 88
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.09 E-value=2.1e+02 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCCccccChHHHHHHHHHHHHHHHhc
Q 022883 73 SSARSFLSRSQAYALLKQQMEVAAKT 98 (290)
Q Consensus 73 ~~~~~~~gc~~cye~Lk~qL~~aV~~ 98 (290)
|+|.-|-+..+.|..+...|...+.+
T Consensus 2 ~sSelFe~YE~df~~l~~~i~~kl~~ 27 (102)
T 1vcs_A 2 SSGSSGEGYEQDFAVLTAEITSKIAR 27 (102)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888899999999988887776
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=25.09 E-value=2.6e+02 Score=22.32 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHhccchHHHHHHHHHHhhhhccCcH--HHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCC
Q 022883 90 QQMEVAAKTEDYKEAARIRDSLRSFEEEEPI--FRLRRLMKEAVAEERFEDAARYRDKLKEIAPN 152 (290)
Q Consensus 90 ~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v--~~L~~~L~~AI~eEryE~AA~lRDei~eL~P~ 152 (290)
..-..+++.++|++|...=+++......++. ..+...-......++|++|...=+++-++.|.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 3445677889999999988887765544442 22333344556788999999888888888873
No 90
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=24.96 E-value=3.5e+02 Score=23.71 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
..+.+..+=..+++.++|++|..+=++.-.+.. + ..-+...-...+..++|++|...-.++.++.|
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 70 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D-PVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh
Confidence 344555555556666666666666554444332 2 22222333344455566666655555555555
No 91
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=24.95 E-value=58 Score=30.47 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeeceEEEEeC
Q 022883 164 LGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRRHWIITDA 214 (290)
Q Consensus 164 ~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsRhW~ItD~ 214 (290)
.+|.|++++.=-+ ..+ -.-+++|+|.+++++.|+.-+ +.|.
T Consensus 22 ~~l~v~Ls~~~~~--~~~------~~vk~tvtN~g~~~~~lLk~~--~lD~ 62 (343)
T 2x3c_A 22 AGLDAQLTLVDGS--TDD------VRVNLTLTNTGDKPIRLLKWQ--LPGS 62 (343)
T ss_dssp -CEEEEEEECCCS--SSC------CEEEEEEEECSSSCEEEEGGG--SCSS
T ss_pred CceEEEEEecccC--CCC------eEEEEEEEeCCCCceEeeccC--CCCc
Confidence 3788887764211 111 256899999999999999977 5554
No 92
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=24.86 E-value=95 Score=26.32 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEEECCCCcEEEeeceEEEEeCCCCEEeeeeCcccCCceeecCCCceE
Q 022883 191 RVRITNNSERPVQLLRRHWIITDANGKTENILGVGVIGEQPVILPNTSFE 240 (290)
Q Consensus 191 ~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV~G~GVVG~qPvL~PGe~F~ 240 (290)
.|++.|.++.+|++. | .|-+|+.. .+..|.||+.+.
T Consensus 20 ~V~FvN~s~~~V~v~---W--IDy~G~~v---------~Y~~L~PG~~~~ 55 (160)
T 1lm8_V 20 QVIFCNRSPRVVLPV---W--LNFDGEPQ---------PYPTLPPGTGRR 55 (160)
T ss_dssp EEEEEECSSSCEEEE---E--ECTTSCEE---------ECCCBCTTEEEE
T ss_pred EEEEEeCCCCeEEEE---E--ECCCCCEE---------EeeeeCCCCEEe
Confidence 467778888887773 5 34455433 355577776443
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=24.81 E-value=3.2e+02 Score=25.20 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCc--------------HHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEP--------------IFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~--------------v~~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
.....++.+=..+.+.++|++|...=++.-++...++ ..-+...=.-.+..++|++|...-+++-+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3445556666667788999999988666555555442 11111222233456677777777666666
Q ss_pred cCC
Q 022883 149 IAP 151 (290)
Q Consensus 149 L~P 151 (290)
+.|
T Consensus 346 ~~p 348 (457)
T 1kt0_A 346 LDS 348 (457)
T ss_dssp HST
T ss_pred cCC
Confidence 666
No 94
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.69 E-value=3.6e+02 Score=25.61 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 102 KEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 102 e~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
+++..|+.+.+ .|+++|+ +++++-.+-.+.+.+.+-.|.
T Consensus 64 ~~~~~l~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 64 EEKEALIARGK---------ALGEEAK-RLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 45555566555 5555554 334444455556666665553
No 95
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=23.94 E-value=21 Score=28.67 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=30.6
Q ss_pred EEEEEEEECCCCcEEEeeceEEEEeCCCCEEee----------------eeCcccCCceeecCCCceE
Q 022883 189 AYRVRITNNSERPVQLLRRHWIITDANGKTENI----------------LGVGVIGEQPVILPNTSFE 240 (290)
Q Consensus 189 aY~IrI~N~s~~~VQLlsRhW~ItD~~G~~~eV----------------~G~GVVG~qPvL~PGe~F~ 240 (290)
.++|++.|.+..+.+-+...|.|.+.. ..+.+ ....|+...++|.||++++
T Consensus 28 ~vtv~~~N~g~~~~~~m~H~~vi~~~~-~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~s 94 (129)
T 1cuo_A 28 EFTVNFEHKGHMPKTGMGHNWVLAKSA-DVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTS 94 (129)
T ss_dssp EEEEEEEECSSSCHHHHCBCCEEEEGG-GHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEE
T ss_pred EEEEEEEECCCCcccccccceEEecCc-chhhhHHHhhhccccccccccccccceeeeeEECCCCEEE
Confidence 467888898865545567788887632 11100 1234455667888887543
No 96
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=23.92 E-value=1.3e+02 Score=25.95 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=36.7
Q ss_pred cChHHHHHHHHHHHHHHHhc----------c--------chHHHHHHHHHHhhhhccCcHH-----------HHHHHHHH
Q 022883 79 LSRSQAYALLKQQMEVAAKT----------E--------DYKEAARIRDSLRSFEEEEPIF-----------RLRRLMKE 129 (290)
Q Consensus 79 ~gc~~cye~Lk~qL~~aV~~----------E--------~ye~AA~LRdeIk~l~~~d~v~-----------~L~~~L~~ 129 (290)
.....-|++|+.-+..+.-. + -..+...+|.+|++++..+.+. ++...|.+
T Consensus 94 ~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 173 (207)
T 3bvo_A 94 TLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSS 173 (207)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888666554321 1 0123455666666655433333 34455667
Q ss_pred HHhhhhhHHHHHH
Q 022883 130 AVAEERFEDAARY 142 (290)
Q Consensus 130 AI~eEryE~AA~l 142 (290)
|+.+++++.|+.+
T Consensus 174 ~~~~~d~~~A~~~ 186 (207)
T 3bvo_A 174 AFEQDDFEEAKEI 186 (207)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 7777888888743
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=23.78 E-value=2.2e+02 Score=24.11 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=39.3
Q ss_pred HHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 94 VAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 94 ~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+++.+++++|..+=+++-++...++-. +...-.-.+..+++++|..+-+++.++.|
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a-~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQNGEI-GLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcchhH-HHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 3456699999998877776666555422 22333455778889999888888777766
No 98
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=23.71 E-value=1.5e+02 Score=26.48 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCCccCccceecccCCcEEEEEeEEecC
Q 022883 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAPNSLLKCLSDATTLGIRVQVRSVYIED 177 (290)
Q Consensus 99 E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P~~~~~~~s~~~T~GI~V~V~~~y~~e 177 (290)
+-|+.|.++.++|+.-...-.-...++.|+.+|. .|++|+++.+.+.-..+|.-+...+ |..++-=..|.|+++
T Consensus 35 ~lF~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~--~le~~~~~v~~l~LFS~NE~leDIs---T~~LkyLlvpy~Lg~ 108 (243)
T 3qc1_A 35 ELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLE--LLEKAAGMLSQLDLFSRNEDLEEIA---STDLKYLMVPALQGA 108 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHH--HHHHHHHHHHHHTTTCSSSCSTTSC---TTTGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcccCCCCcccccc---cccchHhhHHHHHHH
Confidence 6688999999988864321122468889999998 8999999999998888877766652 333433333444444
No 99
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=23.56 E-value=1.1e+02 Score=22.07 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 122 RLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 122 ~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
.++.-+++|-...||++.+-|-.=|++|.
T Consensus 20 ~I~~yI~qAk~~~R~DEV~~Le~NLrEL~ 48 (59)
T 1z0j_B 20 NIKAYIFDAKQCGRLDEVEVLTENLRELK 48 (59)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 78899999999999999998887777764
No 100
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.42 E-value=2.3e+02 Score=25.50 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=28.4
Q ss_pred ccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 78 FLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 78 ~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
+.+....+-.+=.+|-++++.+|+++|.+|.+++.
T Consensus 215 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~ 249 (304)
T 3l21_A 215 ISVIAHLAAGQLRELLSAFGSGDIATARKINIAVA 249 (304)
T ss_dssp EESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred EecHHhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455566677778888999999999999999988
No 101
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=22.98 E-value=2.4e+02 Score=21.13 Aligned_cols=59 Identities=7% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhccchHH--HHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcC
Q 022883 83 QAYALLKQQMEVAAKTEDYKE--AARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIA 150 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~--AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~ 150 (290)
...+.|=.+++.++..+++.. ...-|.+|+ .+...|+.++....-.+...|+..+++|+
T Consensus 7 N~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~---------~~i~~l~~~L~~~~~ad~~~i~~~~~~L~ 67 (113)
T 1ud0_A 7 HMLESYAFNMKATVEDEKLQGKINDEDKQKIL---------DKCNEIISWLDKNQTAEKEEFEHQQKELE 67 (113)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhccCCHHHHHHHH---------HHHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 445555556666665323321 111134444 44455555664332224455666666654
No 102
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=22.81 E-value=2.7e+02 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.8
Q ss_pred HhhhhhHHHHHHHHHhhhcCC
Q 022883 131 VAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 131 I~eEryE~AA~lRDei~eL~P 151 (290)
...++|++|-++-+.+-+++|
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHhcCC
Confidence 677889999999999999998
No 103
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=22.58 E-value=2.8e+02 Score=21.77 Aligned_cols=66 Identities=9% Similarity=-0.190 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 85 YALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 85 ye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.+.+-..-..+...++|++|..+=++...+...++ .-+...-......++|++|..+-.++.++.|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-DAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44455555556677888888887666655543332 2222223334566777888777777666655
No 104
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=22.34 E-value=1.7e+02 Score=28.49 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHH-----------------------HHHHhhhh------------ccCcHHHHHHHH
Q 022883 83 QAYALLKQQMEVAAKTEDYKEAARI-----------------------RDSLRSFE------------EEEPIFRLRRLM 127 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~~E~ye~AA~L-----------------------RdeIk~l~------------~~d~v~~L~~~L 127 (290)
..+..++..|+.+|..++..+|..+ ||.|++-= ..-.+.-.++++
T Consensus 101 ~kl~~~~~eL~~ai~~~dl~~a~~~YHklsyeikk~avll~RVYG~stRe~il~~fk~pA~~l~~~~~y~Itv~~~~~~~ 180 (412)
T 2ra1_A 101 TKLDKMRQELKAAVDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTRELLRSTFKADAQALRDRLIYDITVAMKAREA 180 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccHHHHHHHhhhhhHhhhhcEEEEecccChhHHHHHHHHhhchHHHHHHHhhhHHHHHHHHHHH
Confidence 4577888888888888777665544 33332110 112235567889
Q ss_pred HHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 128 KEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 128 ~~AI~eEryE~AA~lRDei~eL~P 151 (290)
+.|+.+++..+|-++-|+..+.-|
T Consensus 181 ~~a~~~g~l~~a~~~l~~v~~~l~ 204 (412)
T 2ra1_A 181 QDAVKAGNLDKAKAALDQVNQYVS 204 (412)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHhccCcHHHHHHHHHHHHHHHH
Confidence 999999999999988888776433
No 105
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.23 E-value=1.5e+02 Score=29.79 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=30.0
Q ss_pred ccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Q 022883 76 RSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLRSF 114 (290)
Q Consensus 76 ~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l 114 (290)
...-...+.++.++.+.+.++..++|+.|+.++++++.+
T Consensus 394 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (758)
T 3pxi_A 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRL 432 (758)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 334445567788888888888889999999999888833
No 106
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=21.92 E-value=2.4e+02 Score=22.42 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=38.9
Q ss_pred ccChHHHHHHHHHHHHHHHhccchHHHHHH----HHHHhhhhccC---cHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 022883 78 FLSRSQAYALLKQQMEVAAKTEDYKEAARI----RDSLRSFEEEE---PIFRLRRLMKEAVAEERFEDAARYRDKL 146 (290)
Q Consensus 78 ~~gc~~cye~Lk~qL~~aV~~E~ye~AA~L----RdeIk~l~~~d---~v~~L~~~L~~AI~eEryE~AA~lRDei 146 (290)
.|.+=+.+..+..+|-.|.+.+++++-..+ ...|+.|...+ ++.......+..+-..--+..+.+|+.+
T Consensus 10 ll~~Y~~il~lS~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~ls~~~~~~~~~lL~~IL~nDaeIR~Ll 85 (123)
T 3nkz_A 10 LLSEYQQILTLSEQMLVLATEGNWDALVDLEMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIEIKRLL 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444556677889999999999999887776 23344443222 2212222223334444445555566553
No 107
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=21.89 E-value=1.3e+02 Score=24.69 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=21.7
Q ss_pred cCCcEEEEEeEEecCcccCCCCeeEEEEEEEEEECCCCcEEEeec
Q 022883 163 TLGIRVQVRSVYIEDRSQPLKGQYFFAYRVRITNNSERPVQLLRR 207 (290)
Q Consensus 163 T~GI~V~V~~~y~~e~S~p~~~~Y~FaY~IrI~N~s~~~VQLlsR 207 (290)
+..+.|+|....+++ . ++| |.|++.-.......+.+|
T Consensus 16 ~~~~~~sI~~~~~~~------~-~y~-Y~I~V~~~d~~~~~V~RR 52 (156)
T 2v6v_A 16 ELLVKASVESFGLED------E-KYW-FLVCCELSNGKTRQLKRY 52 (156)
T ss_dssp CCEEEEEEEEEEEET------T-EEE-EEEEEEETTSCEEEEEEC
T ss_pred CcceEEEEeeEEEEC------C-EEE-EEEEEEEcCCCEEEEEEE
Confidence 345778887766652 2 334 899988654333344443
No 108
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=21.89 E-value=1.9e+02 Score=24.89 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=8.0
Q ss_pred HHHHHHHhhhcCC
Q 022883 139 AARYRDKLKEIAP 151 (290)
Q Consensus 139 AA~lRDei~eL~P 151 (290)
-.+|.++|++..+
T Consensus 193 ~~kl~~~i~~~~~ 205 (207)
T 3bvo_A 193 FSNIEEKIKLKKI 205 (207)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 4466777776554
No 109
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.76 E-value=1.8e+02 Score=19.23 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHhhhcCC
Q 022883 134 ERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 134 EryE~AA~lRDei~eL~P 151 (290)
+++++|..+-..+.+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp SCSHHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHhhccc
Confidence 455555544444444444
No 110
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.70 E-value=1.8e+02 Score=24.89 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=33.5
Q ss_pred hccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHH-HHHHHHhhhcCC
Q 022883 97 KTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDA-ARYRDKLKEIAP 151 (290)
Q Consensus 97 ~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~A-A~lRDei~eL~P 151 (290)
+.+++++|...-+++-++...++-. +.....-....+++++| ..+..++.++.|
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~-l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPET-LINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 3477788777766666555544432 33334444556677654 478888888877
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=21.68 E-value=2e+02 Score=19.56 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
....+...-..+...++|++|..+=++...+...++. -+...-.-....++|++|..+-.++.++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV-YFCNRAAAYSKLGNYAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence 3344444445555556666666655544444333222 111222223445556666655555555544
No 112
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=21.61 E-value=1.9e+02 Score=19.31 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=25.5
Q ss_pred HHHHHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 92 MEVAAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 92 L~~aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
-..+...++|++|..+=++...+...++. -+...-......++|++|..+-.++-++.|
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLDPHNHV-LYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence 33444455566655554444433333222 111112223344555555555554444444
No 113
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.30 E-value=2e+02 Score=19.57 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHh
Q 022883 83 QAYALLKQQMEVAAK 97 (290)
Q Consensus 83 ~cye~Lk~qL~~aV~ 97 (290)
..++.||++|-.=++
T Consensus 7 ~dle~~KqEIL~E~R 21 (45)
T 1use_A 7 SDLQRVKQELLEEVK 21 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 568888888775443
No 114
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.23 E-value=1.1e+02 Score=25.13 Aligned_cols=37 Identities=5% Similarity=0.025 Sum_probs=27.1
Q ss_pred CccccChHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 022883 75 ARSFLSRSQAYALLKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 75 ~~~~~gc~~cye~Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
|++.+|- ..+..+=.+|+.+.+.++.+.+..+-.+|+
T Consensus 84 ss~~lGa-~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 84 SSASIGA-QRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445565 556667788888888888888887777776
No 115
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=20.36 E-value=2.4e+02 Score=23.36 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=15.8
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHh
Q 022883 88 LKQQMEVAAKTEDYKEAARIRDSLR 112 (290)
Q Consensus 88 Lk~qL~~aV~~E~ye~AA~LRdeIk 112 (290)
+..+|..++..+++++|+.+-.+++
T Consensus 128 ~~~~l~~~~~~~~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 128 RHQLMVEQLDNETWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 3444445555678888877766666
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=20.22 E-value=3.9e+02 Score=22.49 Aligned_cols=52 Identities=10% Similarity=-0.000 Sum_probs=26.9
Q ss_pred cchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 99 EDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 99 E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
++|++|...-++..++...++.. +...=......++|++|..+-.++-++.|
T Consensus 52 ~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 52 QQPEQALADCRRALELDGQSVKA-HFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 66666666555544443333221 11122233455667777766666666655
No 117
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.20 E-value=2.9e+02 Score=22.10 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH------hccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 84 AYALLKQQMEVAA------KTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 84 cye~Lk~qL~~aV------~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
.++.|+..++.+- ..|.-..-..|+.+|..|+.. +..-++..++|+. +--.||.++..+..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~e--L~e~r~~~q~a~~-----e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEAD--LAEQQHLRQQAAD-----DCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 4555555554432 346666667777877755543 2222223333333 33466677666543
No 118
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=20.14 E-value=2e+02 Score=20.00 Aligned_cols=53 Identities=17% Similarity=0.013 Sum_probs=26.2
Q ss_pred HHhccchHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhh
Q 022883 95 AAKTEDYKEAARIRDSLRSFEEEEPIFRLRRLMKEAVAEERFEDAARYRDKLKE 148 (290)
Q Consensus 95 aV~~E~ye~AA~LRdeIk~l~~~d~v~~L~~~L~~AI~eEryE~AA~lRDei~e 148 (290)
+++.++|++|.+.=++.-++...++.... ..=.-....++|++|...-.+.-+
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYVGTYY-HLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHH-HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44567888887776665555544333211 111122344555555544444333
No 119
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=20.08 E-value=3.2e+02 Score=21.41 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=26.7
Q ss_pred HHHHhccchHHHHHHHHHHhhhhc-cCcHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCC
Q 022883 93 EVAAKTEDYKEAARIRDSLRSFEE-EEPIFRLRRLMKEAVAEERFEDAARYRDKLKEIAP 151 (290)
Q Consensus 93 ~~aV~~E~ye~AA~LRdeIk~l~~-~d~v~~L~~~L~~AI~eEryE~AA~lRDei~eL~P 151 (290)
...++.++|++|...=++.-.+.. .++.... ..=......++|++|...-.+..++.|
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNNQDSVTAY-NCGVCADNIKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence 334455666666665554444443 3332111 122233444555555555555444444
Done!