BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022885
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 103/199 (51%), Gaps = 29/199 (14%)
Query: 99 EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE------------- 145
E +K FL FKK KY + + LAK QSP FMV AC+DSR PS
Sbjct: 15 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 146 ----------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSL 189
T AA+E+AV L+V NI+VIGHS CGGI+ L+ D
Sbjct: 75 NVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDF 134
Query: 190 TENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFI 249
E WV AK + KA F + C HCEKE+++ S+ NLLTYP++ E + + L +
Sbjct: 135 IEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLAL 194
Query: 250 HGGYYDLLNCTFEKWTLDY 268
GGYYD + +FE W L++
Sbjct: 195 KGGYYDFVKGSFELWGLEF 213
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ IAC+DSR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIACSDSR-VPAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG YD+
Sbjct: 173 K--LSLHGWVYDV 183
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSR-APAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG YD+
Sbjct: 173 K--LSLHGWVYDV 183
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLFIGCSDSR-VPAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG YD+
Sbjct: 173 K--LSLHGWVYDV 183
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSR-VPAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG YD+
Sbjct: 173 K--LSLHGWVYDV 183
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSR-VPAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG YD+
Sbjct: 173 K--LSLHGWVYDV 183
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ I C+DSR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSDSR-VPAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG +D+
Sbjct: 173 K--LSLHGWVFDV 183
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 44/193 (22%)
Query: 98 FEEMKQRF---LSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSE--TN----- 147
+++KQ F S+ + E +F+ LA Q+P ++ I C++SR P+E TN
Sbjct: 1 MDKIKQLFANNYSWAQRMKEENSTYFKELADHQTPHYLWIGCSNSR-VPAEKLTNLEPGE 59
Query: 148 -------------------AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQS 188
+ +++AV+ L++++I++ GH++CGGI A M D
Sbjct: 60 LFVHRNVANQVIHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLG 114
Query: 189 LTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVR 243
L NW+++ + F+ LS +++ K +++ + NL + W ER +
Sbjct: 115 LINNWLLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQ 172
Query: 244 KELLFIHGGYYDL 256
K L +HG YD+
Sbjct: 173 K--LSLHGWVYDV 183
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 32/139 (23%)
Query: 120 FQNLAKAQSPKFMVIACADSRNGPSETNAALE--------------------------FA 153
F+ LA+AQ P+F+ I C+DSR P+E LE +A
Sbjct: 29 FEKLAQAQKPRFLWIGCSDSRV-PAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYA 87
Query: 154 VNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSF 213
V+ LEV++I++ GHS CGGI+A + + L NW+++ + + + +
Sbjct: 88 VDVLEVEHIIICGHSGCGGIKAAVE-----NPELGLINNWLLHIRDIWLKHSSLLGKMPE 142
Query: 214 DQQCRHCEKESISRSILNL 232
+Q+ + ++ + NL
Sbjct: 143 EQRLDALYELNVMEQVYNL 161
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 42/197 (21%)
Query: 120 FQNLAKAQSPKFMVIACADSRNGPSETNAALE--------------------------FA 153
F+ LA+AQ P+F+ I C+DSR P+E LE +A
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRV-PAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYA 84
Query: 154 VNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSF 213
V+ LEV++I++ GH CGG+QA + + L NW+++ + F+ + +
Sbjct: 85 VDVLEVEHIIICGHYGCGGVQAAVE-----NPELGLINNWLLHIRDIWFKHSSLLGEMPQ 139
Query: 214 DQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDY 268
+++ + ++ + NL + W R + + IHG Y + + +
Sbjct: 140 ERRLDTLCELNVMEQVYNLGHSTIMQSAW----KRGQKVTIHGWAYGIHDGLLRDLDVTA 195
Query: 269 KGRKVDEEEVGRHSIKD 285
R+ E+ RH I +
Sbjct: 196 TNRETLEQRY-RHGISN 211
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 32/110 (29%)
Query: 120 FQNLAKAQSPKFMVIACADSRNGPSETNAALE--------------------------FA 153
F+ LA+AQ P+F+ I C+DSR P+E LE +A
Sbjct: 26 FEKLAQAQKPRFLWIGCSDSRV-PAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYA 84
Query: 154 VNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFR 203
V+ LEV++I++ GH CGG+QA + + L NW+++ + F+
Sbjct: 85 VDVLEVEHIIICGHYGCGGVQAAVE-----NPELGLINNWLLHIRDIWFK 129
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 30/198 (15%)
Query: 119 HFQNLAKAQSPKFMVIACADSRNGPSE-------------------------TNAALEFA 153
+F +A +Q+P+++ I CADSR P++ + LE+
Sbjct: 30 YFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLVSNKDLNCMSCLEYT 89
Query: 154 VNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSF 213
V+ L++++ILV GH +CG +A + +T W+ + + + + A LS
Sbjct: 90 VDHLKIKHILVCGHYNCGACKAGLVWHPKT---AGVTNLWISDVREVRDKNAAKLHGLSA 146
Query: 214 DQQCRHCEKESISRSILNLLTYPWIEER-VRKELLFIHGGYYDLLNCTFEKWTLDYKGRK 272
D + ++ + N+ P ++ R + L +HG Y ++ G +
Sbjct: 147 DDAWDKMVELNVEAQVFNVCASPIVQAAWARGQPLSVHGIVYTPGTGLVKELIKPITGME 206
Query: 273 VDEEEVGRHSIKDHSFWS 290
D + R +K H F+S
Sbjct: 207 -DAGALLRADLKQHCFFS 223
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 30/113 (26%)
Query: 107 SFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSET------------NAA----- 149
++++ ++ E F LA QSP+++ I CADSR ++ N A
Sbjct: 45 AWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIH 104
Query: 150 --------LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWV 194
L++AV L+V++ILV GH CGG +A + DSR L +NW+
Sbjct: 105 SDISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALG-----DSRLGLIDNWL 152
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 38/145 (26%)
Query: 115 EELEHFQNLAKAQSPKFMVIACADSR-------NGPS-----ETNAA------------- 149
++ + F NLA Q+P+ + I CADSR N P+ N A
Sbjct: 307 QDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMSFLSV 366
Query: 150 LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTA 209
L++AV L+V+ ++V GH CGG A + DSR L +NW+ + + + +A +
Sbjct: 367 LQYAVQYLKVKRVVVCGHYACGGCAAALG-----DSRLGLIDNWLRHIRDVRRHNQAELS 421
Query: 210 HLSFDQQCRHCEKESISRSI-LNLL 233
++ K+S++R I +N+L
Sbjct: 422 RITD-------PKDSLNRLIEINVL 439
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP-------------- 143
+E +RF++ + + ++H LA Q P ++ CADSR
Sbjct: 19 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 78
Query: 144 --------SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 182
S ++E+AV L V I+V+GH CG + A + +D
Sbjct: 79 RTAGHVIDSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAIND 125
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGP-------------- 143
+E +RF++ + + ++H LA Q P ++ CADSR
Sbjct: 21 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 80
Query: 144 --------SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 182
S ++E+AV L V I+V+GH CG + A + +D
Sbjct: 81 RTAGHVIDSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAIND 127
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 98 FEEMKQRFLSFKKNKYF------EELEHFQNLAKAQSPKFMVIACADSR--------NGP 143
F+E+++ + N+Y+ EE E K Q+P F+ I CADSR P
Sbjct: 27 FKEIRE---VLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKP 83
Query: 144 SE-----------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSR 186
+ + A L +A+ + V +++V+GH+ CGG A D
Sbjct: 84 GDVFVQRNVANQFKPEDDSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAF------DQP 137
Query: 187 QSLTENWVVNAKVAKFRTKAYTAH-LSFDQQCRHCEKESISRSILNLLTYPWIE---ERV 242
EN V H L KE++ ++ N++ P I+ E+
Sbjct: 138 LPTEENPGGTPLVRYLEPIIRLKHSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQA 197
Query: 243 RK---ELLFIHGGYYDL 256
RK +F+HG YDL
Sbjct: 198 RKGEFREVFVHGWLYDL 214
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 47/197 (23%)
Query: 98 FEEMKQRFLSFKKNKYF------EELEHFQNLAKAQSPKFMVIACADSR--------NGP 143
F+E+++ + N+Y+ EE E K Q+P F+ I CADSR P
Sbjct: 31 FKEIRE---VLEGNRYWARKVTSEEPEFMAEQVKGQAPNFLWIGCADSRVPEVTIMARKP 87
Query: 144 SE-----------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSR 186
+ + A L +A+ + V +++V+GH+ CGG A D
Sbjct: 88 GDVFVQRNVANQFKPEDDSSQALLNYAIMNVGVTHVMVVGHTGCGGCIAAF------DQP 141
Query: 187 QSLTENWVVNAKVAKFRTKAYTAH-LSFDQQCRHCEKESISRSILNLLTYPWIE---ERV 242
EN V H L KE++ ++ N++ P I+ E+
Sbjct: 142 LPTEENPGGTPLVRYLEPIIRLKHSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQA 201
Query: 243 RK---ELLFIHGGYYDL 256
RK +F+HG YDL
Sbjct: 202 RKGEFREVFVHGWLYDL 218
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 53/173 (30%)
Query: 124 AKAQSPKFMVIACADSRNG-------PSET-----------------NAALEFAVNTLEV 159
AK QSP + I C+DSR P E A LEFA+ L+V
Sbjct: 40 AKGQSPHTLFIGCSDSRYNENCLGVLPGEVFTWKNVANICHSEDLTLKATLEFAIICLKV 99
Query: 160 QNILVIGHSDCGGIQALMRMQ----------------DDVDSRQSLTENWVVNAKVAKFR 203
+++ GH+DCGGI+ + Q DD+D+ +++ K + +
Sbjct: 100 NKVIICGHTDCGGIKTCLTNQREALPKVNCSHLYKYLDDIDTMYHEESQNLIHLKTQREK 159
Query: 204 TKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDL 256
+ Y +H + +Q +R I N P ++ V+ L ++G Y++
Sbjct: 160 SH-YLSHCNVKRQ--------FNRIIEN----PTVQTAVQNGELQVYGLLYNV 199
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 99 EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFA---VN 155
EE K+RFL+ K ++ + L F ++ P + N LE A +
Sbjct: 105 EEHKERFLALWKQIADRYKDYPETLF------FEILNAPHGNLTPEKWNELLEEALKVIR 158
Query: 156 TLEVQNILVIGHSDCGGIQALMRM 179
+++ ++ ++IG ++ GGI AL ++
Sbjct: 159 SIDKKHTIIIGTAEWGGISALEKL 182
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 99 EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRNGPSETNAALEFA---VN 155
EE K+RFL+ K ++ + L F ++ P + N LE A +
Sbjct: 105 EEHKERFLALWKQIADRYKDYPETLF------FEILNAPHGNLTPEKWNELLEEALKVIR 158
Query: 156 TLEVQNILVIGHSDCGGIQALMRM 179
+++ ++ ++IG ++ GGI AL ++
Sbjct: 159 SIDKKHTIIIGTAEWGGISALEKL 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,319,519
Number of Sequences: 62578
Number of extensions: 261760
Number of successful extensions: 635
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 32
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)